Query psy1207
Match_columns 113
No_of_seqs 120 out of 742
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 17:53:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ory_A Flap endonuclease 1; hy 99.9 5.7E-23 1.9E-27 168.3 8.9 89 2-105 118-206 (363)
2 3qe9_Y Exonuclease 1; exonucle 99.9 1.9E-22 6.6E-27 164.5 9.8 89 3-106 103-191 (352)
3 1b43_A Protein (FEN-1); nuclea 99.9 5.3E-22 1.8E-26 159.4 8.3 88 4-106 106-193 (340)
4 2izo_A FEN1, flap structure-sp 99.9 3E-22 1E-26 161.6 6.4 87 3-104 102-188 (346)
5 3q8k_A Flap endonuclease 1; he 99.8 2.6E-21 9E-26 157.0 9.4 86 3-103 110-195 (341)
6 1a76_A Flap endonuclease-1 pro 99.8 4.5E-22 1.6E-26 159.0 4.0 88 3-105 105-192 (326)
7 1rxw_A Flap structure-specific 99.8 5.4E-21 1.9E-25 153.3 8.0 87 3-105 105-191 (336)
8 1ul1_X Flap endonuclease-1; pr 99.8 2E-21 6.9E-26 158.8 4.4 86 3-103 110-195 (379)
9 1bgx_T TAQ DNA polymerase; DNA 98.9 3.9E-10 1.3E-14 100.6 1.4 60 28-102 94-158 (832)
10 1exn_A 5'-exonuclease, 5'-nucl 98.8 6.5E-09 2.2E-13 83.4 5.4 56 27-97 101-163 (290)
11 3h7i_A Ribonuclease H, RNAse H 95.3 0.03 1E-06 45.4 5.8 49 31-94 110-163 (305)
12 1x60_A Sporulation-specific N- 78.0 2.3 7.8E-05 26.3 3.4 58 26-85 19-77 (79)
13 2xw6_A MGS, methylglyoxal synt 71.7 6 0.00021 28.1 4.6 37 36-84 43-80 (134)
14 1uta_A FTSN, MSGA, cell divisi 58.6 17 0.00057 22.5 4.4 57 26-83 19-76 (81)
15 3v7e_A Ribosome-associated pro 56.5 35 0.0012 21.5 5.7 44 3-46 3-58 (82)
16 3s5o_A 4-hydroxy-2-oxoglutarat 55.2 13 0.00045 28.8 4.1 70 2-78 232-306 (307)
17 2yvq_A Carbamoyl-phosphate syn 53.9 8.1 0.00028 26.9 2.5 40 35-87 61-105 (143)
18 1qv9_A F420-dependent methylen 53.7 20 0.00068 28.8 5.0 49 31-96 81-129 (283)
19 3l21_A DHDPS, dihydrodipicolin 53.4 21 0.00073 27.6 5.1 42 2-43 228-274 (304)
20 3t5x_A PCI domain-containing p 51.4 19 0.00066 26.4 4.3 35 62-96 160-194 (203)
21 1b93_A Protein (methylglyoxal 51.0 21 0.00072 25.8 4.4 32 40-84 56-88 (152)
22 2otd_A Glycerophosphodiester p 46.7 17 0.0006 26.6 3.5 22 68-90 219-240 (247)
23 3fqd_A Protein DHP1, 5'-3' exo 44.8 12 0.0004 34.4 2.6 49 41-100 195-258 (899)
24 1zcc_A Glycerophosphodiester p 44.7 22 0.00075 26.2 3.8 53 22-90 173-228 (248)
25 2y35_A LD22664P; hydrolase-DNA 44.6 15 0.00052 34.3 3.4 76 6-93 115-212 (1140)
26 1vmd_A MGS, methylglyoxal synt 44.2 35 0.0012 25.4 4.8 37 35-84 66-104 (178)
27 3mk7_B Cytochrome C oxidase, C 44.1 9.4 0.00032 29.3 1.6 42 33-78 156-197 (203)
28 1ufm_A COP9 complex subunit 4; 43.9 31 0.0011 22.2 4.0 34 62-95 43-76 (84)
29 3cpr_A Dihydrodipicolinate syn 43.7 38 0.0013 26.1 5.2 43 2-44 229-276 (304)
30 2pcq_A Putative dihydrodipicol 42.6 47 0.0016 25.3 5.4 42 2-44 206-252 (283)
31 1f6k_A N-acetylneuraminate lya 42.5 18 0.00061 27.7 3.1 43 2-44 218-265 (293)
32 3dz1_A Dihydrodipicolinate syn 42.3 34 0.0012 26.5 4.7 73 2-80 228-306 (313)
33 4e8j_A Lincosamide resistance 42.0 55 0.0019 23.9 5.5 55 24-78 5-68 (161)
34 1vd6_A Glycerophosphoryl diest 41.9 30 0.001 25.0 4.1 22 68-90 198-219 (224)
35 3tak_A DHDPS, dihydrodipicolin 40.8 37 0.0013 25.9 4.6 70 2-78 216-290 (291)
36 3ch0_A Glycerophosphodiester p 40.4 18 0.00062 26.7 2.7 22 68-90 248-269 (272)
37 2r8w_A AGR_C_1641P; APC7498, d 40.2 39 0.0013 26.5 4.8 43 2-44 253-300 (332)
38 3pie_A 5'->3' exoribonuclease 39.4 32 0.0011 32.4 4.7 34 62-95 173-215 (1155)
39 2wkj_A N-acetylneuraminate lya 37.6 21 0.00073 27.5 2.8 42 3-44 227-273 (303)
40 3a5f_A Dihydrodipicolinate syn 37.6 44 0.0015 25.5 4.6 43 2-44 216-263 (291)
41 2lqo_A Putative glutaredoxin R 37.0 80 0.0027 20.1 5.3 17 30-46 17-33 (92)
42 2r91_A 2-keto-3-deoxy-(6-phosp 36.9 24 0.00083 26.9 3.0 43 2-44 207-255 (286)
43 3fiq_A OBP1, RCG36470, odorant 36.8 17 0.00059 25.0 2.0 28 16-43 115-142 (157)
44 3ks6_A Glycerophosphoryl diest 36.4 20 0.0007 26.5 2.4 22 68-90 216-237 (250)
45 1rlz_A DHS, deoxyhypusine synt 36.1 50 0.0017 27.2 4.9 26 62-87 108-133 (369)
46 3pdk_A Phosphoglucosamine muta 35.9 42 0.0014 27.5 4.5 52 33-88 210-263 (469)
47 3na8_A Putative dihydrodipicol 35.9 23 0.0008 27.6 2.8 43 2-44 240-287 (315)
48 2o55_A Putative glycerophospho 35.2 21 0.00073 26.2 2.4 22 68-90 228-249 (258)
49 3e96_A Dihydrodipicolinate syn 35.0 54 0.0018 25.4 4.8 71 2-79 225-303 (316)
50 3h5d_A DHDPS, dihydrodipicolin 35.0 19 0.00064 28.1 2.1 42 2-43 222-268 (311)
51 2pz0_A Glycerophosphoryl diest 35.0 27 0.00093 25.7 2.9 22 68-90 223-244 (252)
52 3qvq_A Phosphodiesterase OLEI0 34.5 28 0.00097 25.6 3.0 22 68-90 222-243 (252)
53 3m5v_A DHDPS, dihydrodipicolin 34.5 21 0.00071 27.5 2.3 71 2-79 223-299 (301)
54 2vc6_A MOSA, dihydrodipicolina 33.9 49 0.0017 25.3 4.3 43 2-44 216-263 (292)
55 1qys_A TOP7; alpha-beta, novel 33.6 1.1E+02 0.0038 20.7 6.2 58 28-94 31-92 (106)
56 3qze_A DHDPS, dihydrodipicolin 33.5 29 0.00098 27.1 3.0 70 2-78 238-312 (314)
57 3fkr_A L-2-keto-3-deoxyarabona 32.9 29 0.00098 27.0 2.8 41 2-42 227-272 (309)
58 2ojp_A DHDPS, dihydrodipicolin 32.8 42 0.0014 25.6 3.8 42 3-44 217-263 (292)
59 2nuw_A 2-keto-3-deoxygluconate 32.8 30 0.001 26.4 2.9 43 2-44 206-254 (288)
60 3h1g_A Chemotaxis protein CHEY 32.7 87 0.003 19.2 5.2 44 26-85 14-58 (129)
61 2ehh_A DHDPS, dihydrodipicolin 32.6 44 0.0015 25.5 3.8 43 2-44 216-263 (294)
62 2yxg_A DHDPS, dihydrodipicolin 32.5 41 0.0014 25.6 3.7 42 3-44 215-261 (289)
63 1o5k_A DHDPS, dihydrodipicolin 32.1 47 0.0016 25.6 4.0 42 3-44 232-278 (306)
64 3d0c_A Dihydrodipicolinate syn 32.0 30 0.001 26.9 2.9 43 2-44 225-275 (314)
65 1xki_A VON ebner'S gland prote 31.3 15 0.0005 25.0 0.8 45 18-70 111-158 (162)
66 2v9d_A YAGE; dihydrodipicolini 30.9 63 0.0022 25.5 4.6 72 2-79 250-327 (343)
67 1rvv_A Riboflavin synthase; tr 30.8 65 0.0022 23.2 4.3 47 25-84 26-77 (154)
68 3eya_A Pyruvate dehydrogenase 30.7 1.5E+02 0.005 24.2 6.9 32 29-60 215-250 (549)
69 3gyz_A Chaperone protein IPGC; 30.7 39 0.0013 22.7 2.9 35 6-40 114-150 (151)
70 2oog_A Glycerophosphoryl diest 30.6 21 0.00072 26.8 1.7 22 68-90 253-274 (287)
71 1wqa_A Phospho-sugar mutase; a 30.5 66 0.0023 26.0 4.7 56 33-89 190-246 (455)
72 2lbw_A H/ACA ribonucleoprotein 30.5 92 0.0032 20.9 4.9 24 23-46 44-68 (121)
73 1w3i_A EDA, 2-keto-3-deoxy glu 30.0 52 0.0018 25.1 3.9 43 2-44 208-256 (293)
74 3no3_A Glycerophosphodiester p 29.9 38 0.0013 24.8 3.0 42 33-90 188-229 (238)
75 3eb2_A Putative dihydrodipicol 29.7 44 0.0015 25.7 3.4 43 2-44 219-266 (300)
76 3i3w_A Phosphoglucosamine muta 29.7 57 0.002 26.4 4.3 53 33-88 188-241 (443)
77 1x7f_A Outer surface protein; 29.7 1.6E+02 0.0055 24.2 6.9 67 21-87 177-252 (385)
78 1c2y_A Protein (lumazine synth 29.5 78 0.0027 22.9 4.5 45 25-84 27-77 (156)
79 3l12_A Putative glycerophospho 29.4 34 0.0012 26.1 2.7 46 25-90 256-301 (313)
80 1hqk_A 6,7-dimethyl-8-ribityll 29.2 67 0.0023 23.1 4.1 47 25-84 26-77 (154)
81 1kz1_A 6,7-dimethyl-8-ribityll 29.0 73 0.0025 23.1 4.3 45 25-84 31-83 (159)
82 3on1_A BH2414 protein; structu 28.9 62 0.0021 20.9 3.6 26 22-47 41-66 (101)
83 1zv1_A Doublesex protein; UBA 28.8 37 0.0012 21.8 2.3 18 27-44 7-24 (65)
84 2pju_A Propionate catabolism o 28.6 76 0.0026 23.7 4.5 46 27-84 115-160 (225)
85 3si9_A DHDPS, dihydrodipicolin 28.4 38 0.0013 26.4 2.9 42 2-43 238-284 (315)
86 3uw2_A Phosphoglucomutase/phos 28.2 1.3E+02 0.0045 24.8 6.3 56 31-88 208-266 (485)
87 2pr7_A Haloacid dehalogenase/e 28.2 1.1E+02 0.0036 18.7 5.6 43 32-85 25-67 (137)
88 1k7j_A Protein YCIO, protein T 27.8 1.3E+02 0.0043 22.0 5.5 47 32-86 128-175 (206)
89 2rfg_A Dihydrodipicolinate syn 27.8 44 0.0015 25.6 3.1 43 2-44 215-262 (297)
90 3ib6_A Uncharacterized protein 27.6 1.1E+02 0.0037 20.7 4.8 47 32-87 41-88 (189)
91 1e5p_A Aphrodisin; lipocalin, 27.6 37 0.0013 22.5 2.4 27 17-43 110-136 (151)
92 2k6x_A Sigma-A, RNA polymerase 27.6 1.1E+02 0.0036 18.8 4.4 34 13-46 27-61 (72)
93 2ztj_A Homocitrate synthase; ( 27.3 1.4E+02 0.0046 23.8 6.0 47 22-78 19-65 (382)
94 2eqa_A Hypothetical protein ST 27.2 1.8E+02 0.0062 23.4 6.8 46 33-86 129-174 (352)
95 3kzp_A LMO0111 protein, putati 27.2 65 0.0022 22.7 3.7 36 28-78 186-221 (235)
96 4hjh_A Phosphomannomutase; str 27.0 1.1E+02 0.0039 24.8 5.6 54 32-89 193-249 (481)
97 2rbd_A BH2358 protein; putativ 26.6 34 0.0012 24.0 2.1 33 13-45 46-78 (171)
98 1kkh_A Mevalonate kinase; mixe 26.6 1.9E+02 0.0066 21.2 7.8 73 4-78 230-308 (317)
99 3kbb_A Phosphorylated carbohyd 26.3 67 0.0023 21.5 3.5 21 31-51 90-110 (216)
100 2cp8_A NEXT to BRCA1 gene 1 pr 25.6 33 0.0011 21.0 1.7 20 61-80 3-23 (54)
101 1o1z_A GDPD, glycerophosphodie 25.5 64 0.0022 23.5 3.5 43 31-90 188-230 (234)
102 3flu_A DHDPS, dihydrodipicolin 25.4 45 0.0015 25.6 2.8 70 2-78 222-296 (297)
103 1dzk_A PIG OBP, odorant-bindin 25.3 43 0.0015 22.2 2.4 26 18-43 117-142 (157)
104 3hq1_A 2-isopropylmalate synth 25.3 1.3E+02 0.0043 26.5 5.8 47 22-78 87-133 (644)
105 4a1f_A DNAB helicase, replicat 25.0 19 0.00066 28.5 0.6 54 27-93 182-238 (338)
106 8abp_A L-arabinose-binding pro 24.8 1.4E+02 0.0049 21.0 5.2 20 27-46 18-37 (306)
107 2r6o_A Putative diguanylate cy 24.8 1E+02 0.0035 23.2 4.7 36 28-78 220-255 (294)
108 2q5c_A NTRC family transcripti 24.7 1E+02 0.0034 22.2 4.4 43 29-83 105-147 (196)
109 2oi2_A Mevalonate kinase; enzy 24.6 2E+02 0.0068 20.7 6.4 74 3-79 203-285 (292)
110 1xky_A Dihydrodipicolinate syn 24.4 33 0.0011 26.4 1.8 43 2-44 227-274 (301)
111 2jz1_A Protein doublesex; sex 24.2 45 0.0015 22.2 2.2 18 27-44 7-24 (80)
112 3tlq_A Regulatory protein YDIV 23.9 81 0.0028 22.8 3.8 38 26-78 183-220 (242)
113 1di0_A Lumazine synthase; tran 23.6 73 0.0025 23.0 3.5 47 25-84 24-75 (158)
114 1bj7_A D 2; allergen, lipocali 23.4 48 0.0017 22.1 2.3 26 18-43 116-141 (156)
115 2f7l_A 455AA long hypothetical 23.4 1.4E+02 0.0049 23.9 5.5 55 33-89 188-244 (455)
116 3ttc_A HYPF, transcriptional r 23.3 1.6E+02 0.0054 25.8 6.1 50 33-90 218-267 (657)
117 2hlv_A Odorant-binding protein 22.9 51 0.0017 22.1 2.4 26 18-43 118-143 (160)
118 4ex6_A ALNB; modified rossman 22.9 1.2E+02 0.0042 20.3 4.4 44 32-86 111-154 (237)
119 1p5d_X PMM, phosphomannomutase 22.8 1.1E+02 0.0039 24.6 4.8 55 33-89 188-245 (463)
120 3nq4_A 6,7-dimethyl-8-ribityll 22.6 57 0.0019 23.7 2.7 47 25-84 26-78 (156)
121 3d02_A Putative LACI-type tran 22.6 2E+02 0.0068 20.2 5.6 18 28-45 21-38 (303)
122 1ejb_A Lumazine synthase; anal 22.4 1.4E+02 0.0049 21.7 4.9 45 25-84 30-86 (168)
123 3uf7_A UDG, uracil-DNA glycosy 22.3 54 0.0019 25.5 2.7 43 21-63 35-77 (237)
124 3s83_A Ggdef family protein; s 22.1 1.1E+02 0.0038 21.9 4.2 36 28-78 196-231 (259)
125 1xx1_A Smase I, sphingomyelina 22.1 43 0.0015 24.8 2.0 22 68-90 236-257 (285)
126 4f3h_A Fimxeal, putative uncha 22.1 86 0.0029 22.5 3.6 37 27-78 199-235 (250)
127 3lou_A Formyltetrahydrofolate 22.1 66 0.0023 25.1 3.2 44 33-85 135-178 (292)
128 3hv8_A Protein FIMX; EAL phosp 22.1 1.1E+02 0.0038 22.1 4.2 37 27-78 208-244 (268)
129 3n0v_A Formyltetrahydrofolate 21.9 58 0.002 25.3 2.8 44 33-85 130-173 (286)
130 2obx_A DMRL synthase 1, 6,7-di 21.6 71 0.0024 23.1 3.0 47 25-84 25-76 (157)
131 3o1l_A Formyltetrahydrofolate 21.4 1.1E+02 0.0038 24.0 4.3 44 33-85 145-188 (302)
132 1ew3_A Allergen EQU C 1; lipoc 21.2 59 0.002 21.5 2.4 26 18-43 116-141 (159)
133 3ivs_A Homocitrate synthase, m 21.1 1.3E+02 0.0045 24.7 4.9 27 22-48 55-81 (423)
134 2fqx_A Membrane lipoprotein TM 21.1 2.5E+02 0.0086 20.7 6.2 47 26-84 22-68 (318)
135 2kat_A Uncharacterized protein 20.6 42 0.0014 20.1 1.4 20 7-26 64-83 (115)
136 2fi1_A Hydrolase, haloacid deh 20.6 1.6E+02 0.0054 18.9 4.4 20 30-49 87-106 (190)
137 1ii5_A SLR1257 protein; membra 20.4 1.5E+02 0.0052 19.4 4.4 52 30-96 32-91 (233)
138 1ccw_B Protein (glutamate muta 20.3 2.5E+02 0.0087 23.8 6.6 70 11-91 31-101 (483)
139 3sao_A Extracellular fatty aci 20.1 59 0.002 21.9 2.3 26 18-43 113-138 (160)
No 1
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.88 E-value=5.7e-23 Score=168.34 Aligned_cols=89 Identities=34% Similarity=0.555 Sum_probs=84.5
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYA 81 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~ 81 (113)
++.+++++|+.+++.++++|++++|++|+..++++|+.|||||++ ||+|||||||+|+++|++|+
T Consensus 118 ~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~---------------apgEADaqiA~La~~g~~~~ 182 (363)
T 3ory_A 118 KYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQ---------------APAEGEAQAAYIVKKGDAYA 182 (363)
T ss_dssp HHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEE---------------CSSCHHHHHHHHHHTTSCSE
T ss_pred HHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEE---------------eCccHHHHHHHHHHCCCeEE
Confidence 456678899999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEcCCCceeeecCCeeeeccccCC
Q psy1207 82 TATEDMDALTFGTNILLRQQLSWA 105 (113)
Q Consensus 82 V~SeDsD~l~fGa~~vlr~~~~~~ 105 (113)
|+|+|+|+|.||++.++++++..+
T Consensus 183 I~S~D~D~l~fg~~~v~~~l~~~~ 206 (363)
T 3ory_A 183 SASQDYDSLLFGSPKLVRNLTISG 206 (363)
T ss_dssp EECSSSHHHHTTCSEEEESTTTCE
T ss_pred EECCCcCccccCCCeEEEEeeccc
Confidence 999999999999999999988654
No 2
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=99.87 E-value=1.9e-22 Score=164.46 Aligned_cols=89 Identities=26% Similarity=0.309 Sum_probs=83.0
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYAT 82 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V 82 (113)
..++.++|+.+++.++++|++++|+.|+..++++|+.|||||++ ||+|||||||+|.++|++|+|
T Consensus 103 ~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~---------------ap~EADaqiA~La~~g~~~~I 167 (352)
T 3qe9_Y 103 GKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLV---------------APYEADAQLAYLNKAGIVQAI 167 (352)
T ss_dssp HHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEE---------------CSSCHHHHHHHHHHTTSCSEE
T ss_pred HHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEE---------------CCcchHHHHHHHHHCCCeEEE
Confidence 34567789999999999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCceeeecCCeeeeccccCCc
Q psy1207 83 ATEDMDALTFGTNILLRQQLSWAT 106 (113)
Q Consensus 83 ~SeDsD~l~fGa~~vlr~~~~~~~ 106 (113)
+|+|+|+|.||++.++++++..+.
T Consensus 168 ~S~D~Dll~~~~~~v~~~~~~~~~ 191 (352)
T 3qe9_Y 168 ITEDSALLAFGCKKVILKMDQFGN 191 (352)
T ss_dssp ECSCGGGGGGTCSEEEESCCTTSE
T ss_pred EeCCcCcccccCCeEEEeccCCCC
Confidence 999999999999999998876543
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.86 E-value=5.3e-22 Score=159.40 Aligned_cols=88 Identities=40% Similarity=0.619 Sum_probs=83.3
Q ss_pred hHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEE
Q psy1207 4 TLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATA 83 (113)
Q Consensus 4 ~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~ 83 (113)
.++.+.|+.+++.+++++++.+|+.++..++++|+.|||||++ ||+|||||||+|+++|++|+|+
T Consensus 106 ~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~---------------ap~EADa~iA~La~~g~~~~i~ 170 (340)
T 1b43_A 106 REALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQ---------------APSEGEAQAAYMAAKGSVYASA 170 (340)
T ss_dssp HHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEE---------------CSSCHHHHHHHHHHHTSSSEEE
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEE---------------cChhHHHHHHHHHHcCCEEEEE
Confidence 4477899999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cCCCceeeecCCeeeeccccCCc
Q psy1207 84 TEDMDALTFGTNILLRQQLSWAT 106 (113)
Q Consensus 84 SeDsD~l~fGa~~vlr~~~~~~~ 106 (113)
|+|+|+|+||++.++++++..+.
T Consensus 171 S~D~D~l~~g~~~v~~~~~~~~~ 193 (340)
T 1b43_A 171 SQDYDSLLFGAPRLVRNLTITGK 193 (340)
T ss_dssp CSSSHHHHTTCSEEEESTTTCEE
T ss_pred ccCCCcceecCcEEEEEeccCCC
Confidence 99999999999999999886643
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.86 E-value=3e-22 Score=161.60 Aligned_cols=87 Identities=37% Similarity=0.580 Sum_probs=61.7
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYAT 82 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V 82 (113)
+.++.+.|+.+++.+|+++++.+|+.++..++++|+.|||||++ ||+|||||||+|++.|++|+|
T Consensus 102 l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~---------------ap~EADa~ia~La~~g~~~~I 166 (346)
T 2izo_A 102 LERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQ---------------APSEGEAEAAYLNKLGLSWAA 166 (346)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCCEEE---------------CSSCHHHHHHHHHHTTSSSEE
T ss_pred HHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEE---------------cCCcHHHHHHHHHhCCCeEEE
Confidence 55677899999999999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCceeeecCCeeeeccccC
Q psy1207 83 ATEDMDALTFGTNILLRQQLSW 104 (113)
Q Consensus 83 ~SeDsD~l~fGa~~vlr~~~~~ 104 (113)
+|+|+|+|.||++.++++++..
T Consensus 167 ~S~D~D~l~~~~~~v~~~~~~~ 188 (346)
T 2izo_A 167 ASQDYDAILFGAKRLVRNLTIT 188 (346)
T ss_dssp ECSSSHHHHTTCSEEEESSCC-
T ss_pred ECCCCCcceecCCeEEEEeccc
Confidence 9999999999999999998654
No 5
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.85 E-value=2.6e-21 Score=157.04 Aligned_cols=86 Identities=60% Similarity=0.979 Sum_probs=82.0
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYAT 82 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V 82 (113)
++++.+.|+.+++.+|++|++++|+.++..++++|+.|||||++ ||+|||||||+|.++|.+++|
T Consensus 110 ~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~---------------ap~EADd~ia~La~~g~v~~i 174 (341)
T 3q8k_A 110 LQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLD---------------APSEAEASCAALVKAGKVYAA 174 (341)
T ss_dssp HHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEE---------------CSSCHHHHHHHHHHTTSSSEE
T ss_pred HHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEE---------------CCccHHHHHHHHHhcCCeEEE
Confidence 45677889999999999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCceeeecCCeeeecccc
Q psy1207 83 ATEDMDALTFGTNILLRQQLS 103 (113)
Q Consensus 83 ~SeDsD~l~fGa~~vlr~~~~ 103 (113)
+|+|+|+|.||++.++++++.
T Consensus 175 ~s~D~D~l~~~~~~v~~~~~~ 195 (341)
T 3q8k_A 175 ATEDMDCLTFGSPVLMRHLTA 195 (341)
T ss_dssp ECSCTHHHHTTCSEEEESCCC
T ss_pred EcCCccccccCCcEEEEcccc
Confidence 999999999999999999853
No 6
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.84 E-value=4.5e-22 Score=158.99 Aligned_cols=88 Identities=39% Similarity=0.625 Sum_probs=82.1
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYAT 82 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V 82 (113)
+.++.+.|+.+++.+++++++++|+.++..++++|+.|||||++ ||+|||||||+|.++|++++|
T Consensus 105 l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~---------------apgEAD~~ia~La~~g~~~~I 169 (326)
T 1a76_A 105 MKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVE---------------APSEGEAQASYMAKKGDVWAV 169 (326)
T ss_dssp CCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEE---------------CSSCHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEE---------------CCccHHHHHHHHHHCCCEEEE
Confidence 33456678899999999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCceeeecCCeeeeccccCC
Q psy1207 83 ATEDMDALTFGTNILLRQQLSWA 105 (113)
Q Consensus 83 ~SeDsD~l~fGa~~vlr~~~~~~ 105 (113)
+|+|+|+|.||++.++++++..+
T Consensus 170 ~S~D~Dll~~~~~~v~~~~~~~~ 192 (326)
T 1a76_A 170 VSQDYDALLYGAPRVVRNLTTTK 192 (326)
T ss_dssp ECSSSGGGGGTCSEEEESSSSCS
T ss_pred ecCCcccceecCCEEEEeecCCC
Confidence 99999999999999999987653
No 7
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.83 E-value=5.4e-21 Score=153.29 Aligned_cols=87 Identities=38% Similarity=0.533 Sum_probs=80.9
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYAT 82 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V 82 (113)
+.++.+.|+ +++.++.++++.+|+.++..++++|+.|||||++ ||+|||||||+|.++|++++|
T Consensus 105 ~~~~~~~g~-~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~---------------apgeAEA~lA~la~~g~~~~I 168 (336)
T 1rxw_A 105 WIAALQAGD-KDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVD---------------APSEGEAQAAYMAAKGDVEYT 168 (336)
T ss_dssp HHHHHHHTC-TTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEE---------------CSSCHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHhch-HHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEE---------------cCchHHHHHHHHHHcCCeeEE
Confidence 456678888 8899999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCceeeecCCeeeeccccCC
Q psy1207 83 ATEDMDALTFGTNILLRQQLSWA 105 (113)
Q Consensus 83 ~SeDsD~l~fGa~~vlr~~~~~~ 105 (113)
+|+|+|+|.||++.++|+++.++
T Consensus 169 ~S~D~Dllql~~~~v~~~l~~~~ 191 (336)
T 1rxw_A 169 GSQDYDSLLFGSPRLARNLAITG 191 (336)
T ss_dssp ECSSSHHHHTTCSEEEESCCC--
T ss_pred EcCCCCcceecCCeEEEeccccc
Confidence 99999999999999999987664
No 8
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.83 E-value=2e-21 Score=158.82 Aligned_cols=86 Identities=60% Similarity=0.979 Sum_probs=65.5
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYAT 82 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V 82 (113)
+.++.+.|+.+++++|+++++++|+.++..++++|+.|||||++ ||+|||||||+|+++|.+|+|
T Consensus 110 ~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~---------------apgEADd~iA~La~~g~~~~i 174 (379)
T 1ul1_X 110 LQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLD---------------APSEAEASCAALVKAGKVYAA 174 (379)
T ss_dssp -------------------CCCCCCSCHHHHHHHHHHHTCCEEE---------------CSSCHHHHHHHHHHHTSSSEE
T ss_pred HHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeec---------------CCCcHHHHHHHHHhcCCeEEE
Confidence 45677889999999999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCceeeecCCeeeecccc
Q psy1207 83 ATEDMDALTFGTNILLRQQLS 103 (113)
Q Consensus 83 ~SeDsD~l~fGa~~vlr~~~~ 103 (113)
+|+|+|+|+||++.++++++.
T Consensus 175 iS~D~Dll~~g~~~v~~~~~~ 195 (379)
T 1ul1_X 175 ATEDMDCLTFGSPVLMRHLTA 195 (379)
T ss_dssp ECSCTHHHHTTCSEEEECSSC
T ss_pred EecCcCccccccceEEEEecc
Confidence 999999999999999999864
No 9
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.87 E-value=3.9e-10 Score=100.60 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcc-hHHHHHHHHHH----CCCeeEEEcCCCceeeecCCeeeeccc
Q psy1207 28 VHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPC-EAEAQCAAMVK----AGKVYATATEDMDALTFGTNILLRQQL 102 (113)
Q Consensus 28 ~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~-EAEAqcA~L~k----~G~vd~V~SeDsD~l~fGa~~vlr~~~ 102 (113)
.++..++++|+.||||++. +|+ |||+|||+|.+ .|..++|+|+|+|++.|+++.|.+..+
T Consensus 94 ~q~~~i~~~l~~~gi~~i~---------------~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~~ 158 (832)
T 1bgx_T 94 RQLALIKELVDLLGLARLE---------------VPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHP 158 (832)
T ss_dssp TGGGTHHHHHHHTTCCCCC---------------CSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCCS
T ss_pred HHHHHHHHHHHHCCCCEEE---------------eCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEeC
Confidence 4577899999999999999 996 99999999988 799999999999999999999887765
No 10
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=98.77 E-value=6.5e-09 Score=83.36 Aligned_cols=56 Identities=21% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHh--hCCcEEEecCCCCCCCCccCCCCcc-hHHHHHHHHHHC----CCeeEEEcCCCceeeecCCee
Q psy1207 27 SVHVKECKELLSL--MGIPYIEVSRSPRLLPNFLGVLAPC-EAEAQCAAMVKA----GKVYATATEDMDALTFGTNIL 97 (113)
Q Consensus 27 ~~~v~~~~~lL~~--~Gip~i~~~~~~~~~~~~~~~~AP~-EAEAqcA~L~k~----G~vd~V~SeDsD~l~fGa~~v 97 (113)
++++..++++|+. ||||++. +|+ |||++||.|.++ |....|+|.|.|.+.++++.+
T Consensus 101 ~q~~~~ikell~~~~~gip~i~---------------~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v 163 (290)
T 1exn_A 101 EQFFEYLKDAFELCKTTFPTFT---------------IRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKV 163 (290)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEC---------------CTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSE
T ss_pred HhhHHHHHHHHHhhCCCCcEEE---------------ECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCE
Confidence 3447789999999 9999999 997 999999999987 777789999999999999875
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=95.28 E-value=0.03 Score=45.45 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcc-hHHHHHHHHHH----CCCeeEEEcCCCceeeecC
Q psy1207 31 KECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPC-EAEAQCAAMVK----AGKVYATATEDMDALTFGT 94 (113)
Q Consensus 31 ~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~-EAEAqcA~L~k----~G~vd~V~SeDsD~l~fGa 94 (113)
.-++++|+.||||++. .|+ |||-.+|-|.+ .|.==.|+|.|.|.+=.-.
T Consensus 110 p~ike~l~a~gi~~l~---------------~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~ 163 (305)
T 3h7i_A 110 KVIDELKAYMPYIVMD---------------IDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHK 163 (305)
T ss_dssp HHHHHHHHHSSSEEEC---------------CTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGG
T ss_pred HHHHHHHHHCCCCEEc---------------cCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCcccccc
Confidence 5689999999999999 777 99988877765 4554579999999985543
No 12
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=77.98 E-value=2.3 Score=26.26 Aligned_cols=58 Identities=16% Similarity=0.073 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCC-CCcchHHHHHHHHHHCCCeeEEEcC
Q psy1207 26 SSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGV-LAPCEAEAQCAAMVKAGKVYATATE 85 (113)
Q Consensus 26 t~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~-~AP~EAEAqcA~L~k~G~vd~V~Se 85 (113)
+++..+....-|+..|+|...+..+ .+|+=.+|- -...||+..|..|.+.|+ |+.+..
T Consensus 19 ~~~~A~~~~~~L~~~g~~~~i~~~~-~~yRV~vGpf~~~~~A~~~~~~L~~~g~-~~~iv~ 77 (79)
T 1x60_A 19 VKANADSLASNAEAKGFDSIVLLKD-GLYKVQIGAFSSKDNADTLAARAKNAGF-DAIVIL 77 (79)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEET-TEEEEEEEEESSHHHHHHHHHHHHHHTS-CCEEEE
T ss_pred CHHHHHHHHHHHHhCCCCeEEecCC-cEEEEEECCcCCHHHHHHHHHHHHHcCC-ceEEEe
Confidence 4555666666677779986665433 245555553 345799999999999998 766543
No 13
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=71.65 E-value=6 Score=28.10 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHh-hCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 36 LLSL-MGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 36 lL~~-~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
+|+. .|+++-.+.. -|-|++.|...+.++|-+|+||-
T Consensus 43 ~L~e~~Gl~v~~v~k------------~~~eG~p~I~d~I~~geIdlVIn 80 (134)
T 2xw6_A 43 RIEEATGLTVEKLLS------------GPLGGDQQMGARVAEGRILAVIF 80 (134)
T ss_dssp HHHHHHCCCCEECSC------------GGGTHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhhCceEEEEEe------------cCCCCcchHHHHHHCCCccEEEE
Confidence 3444 7999887543 25489999999999999999984
No 14
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=58.58 E-value=17 Score=22.53 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccC-CCCcchHHHHHHHHHHCCCeeEEE
Q psy1207 26 SSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLG-VLAPCEAEAQCAAMVKAGKVYATA 83 (113)
Q Consensus 26 t~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~-~~AP~EAEAqcA~L~k~G~vd~V~ 83 (113)
+++..+....-|...|+|..+.. +-.+|+=.+| +-...||++.+..|.+.|+-+.++
T Consensus 19 ~~~~A~~l~~~L~~~G~~a~i~~-~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~iv 76 (81)
T 1uta_A 19 GAEQAETVRAQLAFEGFDSKITT-NNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIR 76 (81)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEE-CSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCBC
T ss_pred CHHHHHHHHHHHHhCCCCeEEEe-CCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEEE
Confidence 45566677777788899966543 3335555555 336789999999999999866554
No 15
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=56.50 E-value=35 Score=21.53 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=31.5
Q ss_pred hhHHHHcCC----HHHHHHHhhh--------ccCCCHHHHHHHHHHHHhhCCcEEE
Q psy1207 3 LTLFLLTGD----AQEIDKFNRR--------LVRVSSVHVKECKELLSLMGIPYIE 46 (113)
Q Consensus 3 ~~~~~~~gd----~~~a~~~~~r--------~~~vt~~~v~~~~~lL~~~Gip~i~ 46 (113)
+++..+.|. ..+..+..++ +...++.....+..+.+.+||||+.
T Consensus 3 ~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~ 58 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSM 58 (82)
T ss_dssp HHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444555544 3445555444 5667888899999999999999999
No 16
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=55.18 E-value=13 Score=28.83 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=42.5
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHC
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKA 76 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~ 76 (113)
++-++..+||.++|++...+...+...+ +.-+|..++.+|++. -..+.|. .-..+.|.+.--+.|.+.
T Consensus 232 ~l~~a~~~Gd~~~A~~l~~~l~~~~~~~~~~~~~~~~K~al~~~G~~~-g~~R~Pl------~~l~~~~~~~l~~~l~~~ 304 (307)
T 3s5o_A 232 QLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMDWFGYYG-GPCRAPL------QELSPAEEEALRMDFTSN 304 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCC-CCCCTTS------CCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHcCCCC-CCcCCCC------CCCCHHHHHHHHHHHHHc
Confidence 3556788999999999887754432221 345899999999963 2122222 223444455555566655
Q ss_pred CC
Q psy1207 77 GK 78 (113)
Q Consensus 77 G~ 78 (113)
|+
T Consensus 305 g~ 306 (307)
T 3s5o_A 305 GW 306 (307)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=53.93 E-value=8.1 Score=26.86 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHhhCCcEEEecCCCCCCCCccCCCCcchH-H----HHHHHHHHCCCeeEEEcCCC
Q psy1207 35 ELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEA-E----AQCAAMVKAGKVYATATEDM 87 (113)
Q Consensus 35 ~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EA-E----AqcA~L~k~G~vd~V~SeDs 87 (113)
+.|+..|||+..+.. +.|. + .++.-+.++|.+|+||..-+
T Consensus 61 ~~L~~~Gi~v~~v~k-------------~~egg~~~~~~~i~d~i~~g~i~lVInt~~ 105 (143)
T 2yvq_A 61 DWLNANNVPATPVAW-------------PSQEGQNPSLSSIRKLIRDGSIDLVINLPN 105 (143)
T ss_dssp HHHHHTTCCCEEECC-------------GGGC-----CBCHHHHHHTTSCCEEEECCC
T ss_pred HHHHHcCCeEEEEEe-------------ccCCCcccccccHHHHHHCCCceEEEECCC
Confidence 455667777777543 5554 5 68999999999999997543
No 18
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=53.72 E-value=20 Score=28.75 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=38.2
Q ss_pred HHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCCCceeeecCCe
Q psy1207 31 KECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATEDMDALTFGTNI 96 (113)
Q Consensus 31 ~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeDsD~l~fGa~~ 96 (113)
...+++|+.-|||+|++|++ |+.- +. -.|..+|+-+.++.-|+ +-|+++
T Consensus 81 ~~ARE~l~~~~iP~IvI~D~------------p~~K-~k-d~l~~~g~GYIivk~Dp---MIGArR 129 (283)
T 1qv9_A 81 SKAREMLADSEYPAVIIGDA------------PGLK-VK-DEMEEQGLGYILVKPDA---MLGARR 129 (283)
T ss_dssp HHHHHHHHTSSSCEEEEEEG------------GGGG-GH-HHHHHTTCEEEEETTSC---CCCCCT
T ss_pred hHHHHHHHhCCCCEEEEcCC------------cchh-hH-HHHHhcCCcEEEEecCc---cccchh
Confidence 45788999999999999995 5444 22 67999999999999887 446654
No 19
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=53.39 E-value=21 Score=27.62 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=32.0
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCc
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIP 43 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip 43 (113)
++-++..+||.++|++...+...+...+ ...+|.+++.+|++
T Consensus 228 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~ 274 (304)
T 3l21_A 228 ELLSAFGSGDIATARKINIAVAPLCNAMSRLGGVTLSKAGLRLQGID 274 (304)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCC
Confidence 3456778999999999988876654433 34489999999985
No 20
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=51.44 E-value=19 Score=26.35 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=31.3
Q ss_pred CcchHHHHHHHHHHCCCeeEEEcCCCceeeecCCe
Q psy1207 62 APCEAEAQCAAMVKAGKVYATATEDMDALTFGTNI 96 (113)
Q Consensus 62 AP~EAEAqcA~L~k~G~vd~V~SeDsD~l~fGa~~ 96 (113)
.+.|+|--+|.|...|+++|.|+-..-++++.-..
T Consensus 160 ~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 160 DIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp CHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred CHHHHHHHHHHHHHcCceEEEEcccccEEEECCCC
Confidence 68899999999999999999999999988886544
No 21
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=51.00 E-value=21 Score=25.79 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=26.1
Q ss_pred hCCcEEEecCCCCCCCCccCCCCcch-HHHHHHHHHHCCCeeEEEc
Q psy1207 40 MGIPYIEVSRSPRLLPNFLGVLAPCE-AEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 40 ~Gip~i~~~~~~~~~~~~~~~~AP~E-AEAqcA~L~k~G~vd~V~S 84 (113)
.|+++-.+.. -.| ++.|...+.++|-+|+||-
T Consensus 56 ~Gl~v~~v~k-------------~~eGG~p~I~d~I~~geIdlVIn 88 (152)
T 1b93_A 56 TGMNVNAMLS-------------GPMGGDQQVGALISEGKIDVLIF 88 (152)
T ss_dssp HCCCCEEECC-------------GGGTHHHHHHHHHHTTCCCEEEE
T ss_pred hCceeEEEEe-------------cCCCCCchHHHHHHCCCccEEEE
Confidence 7888877443 345 8999999999999999984
No 22
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=46.73 E-value=17 Score=26.55 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
++..+|.+.| ||+|+|++-|.+
T Consensus 219 ~~~~~l~~~G-vdgI~TD~p~~~ 240 (247)
T 2otd_A 219 QHAAELLRWG-VDCICTDAIDVI 240 (247)
T ss_dssp HHHHHHHHHT-CSEEEESCTTTS
T ss_pred HHHHHHHHcC-CCEEEeCCHHHH
Confidence 4456677777 999999987765
No 23
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=44.79 E-value=12 Score=34.44 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=36.3
Q ss_pred CCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHC---------CCeeEEEcCCCceeeecCC------eeeec
Q psy1207 41 GIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKA---------GKVYATATEDMDALTFGTN------ILLRQ 100 (113)
Q Consensus 41 Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~---------G~vd~V~SeDsD~l~fGa~------~vlr~ 100 (113)
++.+|. |.+. -|||+|-..-...|. +--.++.+-|+|+++.|=- .|||.
T Consensus 195 ~~~VIl-Sd~~----------vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE 258 (899)
T 3fqd_A 195 NVRFIL-SDAS----------VPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLRE 258 (899)
T ss_dssp TCEEEE-ECTT----------SCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEE
T ss_pred cceEEE-eCCC----------CCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEee
Confidence 555665 5555 599999888766653 5678999999999988743 36664
No 24
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=44.70 E-value=22 Score=26.20 Aligned_cols=53 Identities=8% Similarity=0.084 Sum_probs=32.9
Q ss_pred ccCCCHHHH--HHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHH-HHHCCCeeEEEcCCCcee
Q psy1207 22 LVRVSSVHV--KECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAA-MVKAGKVYATATEDMDAL 90 (113)
Q Consensus 22 ~~~vt~~~v--~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~-L~k~G~vd~V~SeDsD~l 90 (113)
.+.+....+ .+..+.++..|++++.-.- + .| .+... |.+.| ||+|+|++-+.+
T Consensus 173 ~i~~~~~~~~~~~~v~~~~~~G~~v~~wTv--n---------~~----~~~~~~l~~~G-vdgIiTD~p~~~ 228 (248)
T 1zcc_A 173 IIEITPAQMRRPGIIEASRKAGLEIMVYYG--G---------DD----MAVHREIATSD-VDYINLDRPDLF 228 (248)
T ss_dssp EEEECHHHHHSHHHHHHHHHHTCEEEEECC--C---------CC----HHHHHHHHHSS-CSEEEESCHHHH
T ss_pred EEEecHHHhCCHHHHHHHHHCCCEEEEECC--C---------CH----HHHHHHHHHcC-CCEEEECCHHHH
Confidence 344455554 4556667788999776110 0 22 33445 77777 999999987654
No 25
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=44.59 E-value=15 Score=34.28 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=44.0
Q ss_pred HHHcCCHHHHHHHhhhccCC-CHHHHHHHHHHHH------------hhCCcEEEecCCCCCCCCccCCCCcchHHHHHHH
Q psy1207 6 FLLTGDAQEIDKFNRRLVRV-SSVHVKECKELLS------------LMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAA 72 (113)
Q Consensus 6 ~~~~gd~~~a~~~~~r~~~v-t~~~v~~~~~lL~------------~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~ 72 (113)
++..|...+..++...++.+ |+-|. .+...|+ --++.+|. |.+. -|||+|-..-.
T Consensus 115 ~~~~g~~~~~~~fdsn~ITPGT~FM~-~l~~~L~~~i~~k~~~d~~w~~~~Vi~-S~~~----------vPGEGEhKIm~ 182 (1140)
T 2y35_A 115 AAQRGELREHERFDSNCITPGTEFMV-RLQEGLRAFLKTKISTDPLWQRCTVIL-SGQE----------APGEGEHKIMD 182 (1140)
T ss_dssp HHHC-------CCCSGGGSTTSHHHH-HHHHHHHHHHHHHHHHCGGGSSSEEEE-ECSS----------SCSCHHHHHHH
T ss_pred HhhcCCccccccCCccccCCCcHHHH-HHHHHHHHHHHHHhccCccccceEEEE-eCCC----------CCCchHHHHHH
Confidence 34455544445566666666 44443 3222222 12566665 5554 69999987766
Q ss_pred HHHC---------CCeeEEEcCCCceeeec
Q psy1207 73 MVKA---------GKVYATATEDMDALTFG 93 (113)
Q Consensus 73 L~k~---------G~vd~V~SeDsD~l~fG 93 (113)
..+. +.-.++.+.|+|+++.|
T Consensus 183 ~IR~~~~~p~~~pn~~HciyG~DADLImL~ 212 (1140)
T 2y35_A 183 YIRYMKTQPDYDPNTRHCLYGLDAALIILG 212 (1140)
T ss_dssp HHHHHHHSTTCCTTCCEEEECCSHHHHHHH
T ss_pred HHHHHhhCCCCCCCCeEEEEccCHhHHHHH
Confidence 6552 56789999999999876
No 26
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=44.21 E-value=35 Score=25.43 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=28.4
Q ss_pred HHHHh-hCCcEEEecCCCCCCCCccCCCCcch-HHHHHHHHHHCCCeeEEEc
Q psy1207 35 ELLSL-MGIPYIEVSRSPRLLPNFLGVLAPCE-AEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 35 ~lL~~-~Gip~i~~~~~~~~~~~~~~~~AP~E-AEAqcA~L~k~G~vd~V~S 84 (113)
++|+. .|+|+-.+.. -.| ++.|...+.++|-+|+||-
T Consensus 66 ~~L~e~~Gl~v~~v~k-------------~~eGG~pqI~d~I~~geIdlVIn 104 (178)
T 1vmd_A 66 ALLQEKLGLKVHRLKS-------------GPLGGDQQIGAMIAEGKIDVLIF 104 (178)
T ss_dssp HHHHHHHCCCCEECSC-------------GGGTHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHhCceeEEEee-------------cCCCCCchHHHHHHCCCccEEEE
Confidence 34444 8999877433 345 8999999999999999984
No 27
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=44.12 E-value=9.4 Score=29.26 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
-.+.++.+|+||-.- -.-+-..-+.+..|.||..|||+..|-
T Consensus 156 ~~~~l~~~gvpy~~~----~i~~a~~~~~~~~e~~alvAYLq~Lg~ 197 (203)
T 3mk7_B 156 KMSALRMLGVPYTEE----DIAGARDSVNGKTEMDAMVAYLQVLGT 197 (203)
T ss_dssp HHHHHHHTTCCCCHH----HHTTSHHHHTTCBHHHHHHHHHTTTTT
T ss_pred HHHHHHhcCCCCCHH----HHHhHHHHhcchhHHHHHHHHHHHhCc
Confidence 335566689998541 000011113478999999999998875
No 28
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=43.92 E-value=31 Score=22.18 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=30.9
Q ss_pred CcchHHHHHHHHHHCCCeeEEEcCCCceeeecCC
Q psy1207 62 APCEAEAQCAAMVKAGKVYATATEDMDALTFGTN 95 (113)
Q Consensus 62 AP~EAEAqcA~L~k~G~vd~V~SeDsD~l~fGa~ 95 (113)
.+.|+|..++.|...|-+++.|..-.-++.|.-+
T Consensus 43 s~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 43 PAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred CHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 5789999999999999999999999999988654
No 29
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=43.73 E-value=38 Score=26.11 Aligned_cols=43 Identities=28% Similarity=0.316 Sum_probs=31.7
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
++-++...||.++|++...+...+...+ ...+|..++.+|++.
T Consensus 229 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 276 (304)
T 3cpr_A 229 ELYTSFEEGDLVRAREINAKLSPLVAAQGRLGGVSLAKAALRLQGINV 276 (304)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHHHHHHCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 3456778999999999988766654433 234788999999863
No 30
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=42.59 E-value=47 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=31.0
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+...+ . .+|..++.+|++.
T Consensus 206 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~-~~K~al~~~G~~~ 252 (283)
T 2pcq_A 206 ALLDHFREGRLAEAQELQKKLFPLGDLLAKGGVP-LLKQALRHLGLPA 252 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHcCCCC
Confidence 3456778999999999887765544322 3 6888999999864
No 31
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=42.47 E-value=18 Score=27.73 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=32.2
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++..++...+...+ ...+|..++.+|++.
T Consensus 218 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 265 (293)
T 1f6k_A 218 QIFELTKAGKLKEALEIQHVTNDLIEGILANGLYLTIKELLKLEGVDA 265 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 3456778999999999888766654433 345788999999864
No 32
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=42.31 E-value=34 Score=26.53 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=42.3
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH------HHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHH
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV------HVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVK 75 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~------~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k 75 (113)
++-++..+||.++|++...+...+... ....+|.+++.+|+.-.-..+.|. .-..+.+.+.--+.|.+
T Consensus 228 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl------~~l~~~~~~~l~~~l~~ 301 (313)
T 3dz1_A 228 DVVKLSKAGQRDLAHNLFDAHLPLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPG------ASLTDTAREEVDYLLSR 301 (313)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHTTSCSCCCCCSSC------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCC------CCCCHHHHHHHHHHHHh
Confidence 355677899999999987775444322 345689999999983212122332 22344555555566777
Q ss_pred CCCee
Q psy1207 76 AGKVY 80 (113)
Q Consensus 76 ~G~vd 80 (113)
.|.|.
T Consensus 302 ~~~~~ 306 (313)
T 3dz1_A 302 LARVE 306 (313)
T ss_dssp C----
T ss_pred ccccc
Confidence 66664
No 33
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=42.02 E-value=55 Score=23.88 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHhhCCcEEEec---------CCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 24 RVSSVHVKECKELLSLMGIPYIEVS---------RSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 24 ~vt~~~v~~~~~lL~~~Gip~i~~~---------~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
.+|..-+.++.++|...|+||..++ .-||-|+.+-..+.+..++.-...|...|+
T Consensus 5 ~~~~~d~~evl~~l~~~~v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~d~~~l~~~L~~~Gf 68 (161)
T 4e8j_A 5 NVTEKELFYILDLFEHMKVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLEDIGY 68 (161)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHhCCCcEEEEcHhhhhHhcCCCCCcCCCeEEeecHHhHHHHHHHHHHCCC
Confidence 5678889999999999999998854 358888888888899999999999999998
No 34
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=41.94 E-value=30 Score=24.99 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
.+..+|.+.| ||+|+|++-+.+
T Consensus 198 ~~~~~l~~~G-vdgI~TD~p~~~ 219 (224)
T 1vd6_A 198 GEARRLLALG-LDGLIGDRPEVL 219 (224)
T ss_dssp HHHHHHHHTT-CSEEEESCHHHH
T ss_pred HHHHHHHhcC-CCEEEcCCHHHH
Confidence 4556777777 899999986643
No 35
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=40.76 E-value=37 Score=25.92 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=42.9
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHC
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKA 76 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~ 76 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|++.-. .+.|. .-..+.+.+.--+.|.+.
T Consensus 216 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~l~~~~~~~~~K~al~~~G~~~~~-~R~Pl------~~l~~~~~~~l~~~l~~~ 288 (291)
T 3tak_A 216 EVCAVAIAKDEQQAKTLNNKIANLHNILFCESNPIPVKWALHEMGLIDTG-IRLPL------TPLAEQYREPLRNALKDA 288 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHTTSSSTTHHHHHHHHHTTSSCSC-CCTTS------CSCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHCCCCCCC-CCCCC------CCCCHHHHHHHHHHHHHc
Confidence 3456778999999999877654432221 23489999999986332 33332 123455555555666665
Q ss_pred CC
Q psy1207 77 GK 78 (113)
Q Consensus 77 G~ 78 (113)
|+
T Consensus 289 ~~ 290 (291)
T 3tak_A 289 GI 290 (291)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 36
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=40.35 E-value=18 Score=26.73 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
++..+|.+.| ||+|+|++-|.+
T Consensus 248 ~~~~~l~~~G-vdgIiTD~P~~~ 269 (272)
T 3ch0_A 248 EEIETLISLG-VDGIITDYPDLF 269 (272)
T ss_dssp HHHHHHHHHT-CSEEEESCGGGG
T ss_pred HHHHHHHHcC-CCEEEeCCHHHH
Confidence 3455777777 999999987754
No 37
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=40.24 E-value=39 Score=26.53 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=32.3
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|++.
T Consensus 253 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 300 (332)
T 2r8w_A 253 QLMRAAQAGNAEEAKRLDATFQPLWALFKEFGSIRVIYAAANILSLTV 300 (332)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHCHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence 3456778999999999988766654433 345788999999864
No 38
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=39.44 E-value=32 Score=32.38 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=27.5
Q ss_pred CcchHHHHHHHHHHC---------CCeeEEEcCCCceeeecCC
Q psy1207 62 APCEAEAQCAAMVKA---------GKVYATATEDMDALTFGTN 95 (113)
Q Consensus 62 AP~EAEAqcA~L~k~---------G~vd~V~SeDsD~l~fGa~ 95 (113)
-|||+|-..-...|+ +.-.++.+.|+|+++.|=.
T Consensus 173 vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~ 215 (1155)
T 3pie_A 173 VPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLS 215 (1155)
T ss_pred CCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhc
Confidence 599999887766654 4578999999999998854
No 39
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=37.60 E-value=21 Score=27.55 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=31.5
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
+-++..+||.++|++...+...+...+ ...+|..++.+|++.
T Consensus 227 l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 273 (303)
T 2wkj_A 227 IVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVS 273 (303)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCC
Confidence 456778999999999888766654433 345788999999764
No 40
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=37.56 E-value=44 Score=25.48 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.8
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|++.
T Consensus 216 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 263 (291)
T 3a5f_A 216 NMCELYLNGKVNEALKIQLDSLALTNALFIETNPIPVKTAMNLMNMKV 263 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTHHHHHHTTSSSTTHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCC
Confidence 3456778999999998877654332221 335788999999864
No 41
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=37.01 E-value=80 Score=20.08 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhCCcEEE
Q psy1207 30 VKECKELLSLMGIPYIE 46 (113)
Q Consensus 30 v~~~~~lL~~~Gip~i~ 46 (113)
-..+|++|+..||||-.
T Consensus 17 C~~aK~~L~~~gi~y~~ 33 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDE 33 (92)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHhcCCceEE
Confidence 35577888888888766
No 42
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=36.89 E-value=24 Score=26.90 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=31.5
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----H-HHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----V-KECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v-~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++..++...+...+ . ..+|..++.+|++.
T Consensus 207 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~ 255 (286)
T 2r91_A 207 GIRDAVAAGDIERARSLQFLLDEIVESARHIGYAAAVYELVEIFQGYEA 255 (286)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHcCCCC
Confidence 3456778999999999887765554332 3 55788999999864
No 43
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=36.80 E-value=17 Score=24.96 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=25.6
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHhhCCc
Q psy1207 16 DKFNRRLVRVSSVHVKECKELLSLMGIP 43 (113)
Q Consensus 16 ~~~~~r~~~vt~~~v~~~~~lL~~~Gip 43 (113)
-+++.|+-.++++..++.+++.+..|+|
T Consensus 115 ~~LygR~~~~s~e~~e~F~~~~~~~Gl~ 142 (157)
T 3fiq_A 115 ILVAGKREDLNKAQKQELRKLAEEYNIP 142 (157)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3567899999999999999999999998
No 44
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=36.42 E-value=20 Score=26.49 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
.+...|.+.| ||+|+|++-|.+
T Consensus 216 ~~~~~l~~~G-VDgIiTD~P~~~ 237 (250)
T 3ks6_A 216 SQITKALDLG-VKVFTTDRPTLA 237 (250)
T ss_dssp HHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHcC-CCEEEcCCHHHH
Confidence 3455666666 899999986654
No 45
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Probab=36.09 E-value=50 Score=27.23 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=21.0
Q ss_pred CcchHHHHHHHHHHCCCeeEEEcCCC
Q psy1207 62 APCEAEAQCAAMVKAGKVYATATEDM 87 (113)
Q Consensus 62 AP~EAEAqcA~L~k~G~vd~V~SeDs 87 (113)
.|..---..++|.++|+||+|+|.-+
T Consensus 108 issGlR~iI~~Li~~~~VDvIVTTgg 133 (369)
T 1rlz_A 108 ISSGIRETIRYLVQHNMVDVLVTTAG 133 (369)
T ss_dssp HHSTHHHHHHHHHHTTCCSEEEECHH
T ss_pred cchhHHHHHHHHHHcCCeeEEEccCC
Confidence 45555577899999999999999743
No 46
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=35.88 E-value=42 Score=27.54 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=33.1
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccC--CCCcchHHHHHHHHHHCCCeeEEEcCCCc
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLG--VLAPCEAEAQCAAMVKAGKVYATATEDMD 88 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~--~~AP~EAEAqcA~L~k~G~vd~V~SeDsD 88 (113)
+.++|+.+|+.++.+...|. ++|.+ ..+|.- ..+..+++..-+|+.+.-|+|
T Consensus 210 ~~~ll~~lG~~v~~l~~~pD--g~f~n~~~~~~~~--~~l~~~v~~~~adlgia~DgD 263 (469)
T 3pdk_A 210 APYLFADLEADISTMGTSPN--GMNINDGVGSTHP--EVLAELVKEKGADIGLAFDGD 263 (469)
T ss_dssp HHHHHHHTTCEEEEESCCCC--SSCTTSSCSTTST--HHHHHHHHHHTCSEEEEECTT
T ss_pred HHHHHHHcCCEEEEECCCcC--CCCCCCCCCCCCH--HHHHHHHHhcCCcEEEEECCC
Confidence 66789999999988777665 22321 112222 234556677778888877766
No 47
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=35.85 E-value=23 Score=27.59 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=32.7
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+...+ ...+|.+++.+|++.
T Consensus 240 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 287 (315)
T 3na8_A 240 QLYQAVLDGDLEKARALFYRQLPLLDFILRRGLPTTIKAGLGLSGLEV 287 (315)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHcCCCC
Confidence 3556788999999999988776654443 345899999999964
No 48
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=35.20 E-value=21 Score=26.24 Aligned_cols=22 Identities=9% Similarity=-0.066 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
.+..+|.+.| ||+|+|++-+.+
T Consensus 228 ~~~~~l~~~G-vdgI~TD~p~~~ 249 (258)
T 2o55_A 228 EDWKKCLELQ-VDLICSNYPFGL 249 (258)
T ss_dssp HHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHcC-CCEEEeCCHHHH
Confidence 4455667777 999999987654
No 49
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=35.02 E-value=54 Score=25.40 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=42.5
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCH--------HHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHH
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSS--------VHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAM 73 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~--------~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L 73 (113)
++-++..+||.++|++...+...+.. .....+|.+++.+|++. -..+.|. .-..+.|.+.--..|
T Consensus 225 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~~~K~al~~~G~~~-g~~R~Pl------~~l~~~~~~~l~~~l 297 (316)
T 3e96_A 225 EMLEALRNNDNDAVWRIWEDIVPFEDLRGKYNQGNNVVVIKEAMEMLRQNA-GVTRAPV------NELSNEDKQLVTELL 297 (316)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTTTTTTHHHHHHHHHTTCCC-BBCCTTC------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhHHHHHHHHhccCccHHHHHHHHHHCCCCC-CCCCCCC------CCCCHHHHHHHHHHH
Confidence 35567789999999998777543211 12455899999999963 2222232 122344444455566
Q ss_pred HHCCCe
Q psy1207 74 VKAGKV 79 (113)
Q Consensus 74 ~k~G~v 79 (113)
.+.|+.
T Consensus 298 ~~~~l~ 303 (316)
T 3e96_A 298 SSWKLL 303 (316)
T ss_dssp HHTTC-
T ss_pred HHcCCC
Confidence 666653
No 50
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=35.02 E-value=19 Score=28.09 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=29.8
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCc
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIP 43 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip 43 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|++
T Consensus 222 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~ 268 (311)
T 3h5d_A 222 EMFTAIAESDMKKAAAIQRKFIPKVNALFSYPSPAPVKAILNYMGFE 268 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHCCCC
Confidence 3556778999999998877654433222 23489999999995
No 51
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=34.98 E-value=27 Score=25.69 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
.+...|.+.| ||+|+|++-|.+
T Consensus 223 ~~~~~l~~~G-vdgIiTD~P~~~ 244 (252)
T 2pz0_A 223 EDMERMIKAG-VDGIITDDPETL 244 (252)
T ss_dssp HHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHcC-CCEEEcCCHHHH
Confidence 3455667777 999999987654
No 52
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=34.50 E-value=28 Score=25.64 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
.+...|.+.| ||+|+|++-|.+
T Consensus 222 ~~~~~l~~~G-VdgIiTD~P~~~ 243 (252)
T 3qvq_A 222 SLALKLYNQG-LDAVFSDYPQKI 243 (252)
T ss_dssp HHHHHHHHTT-CCEEEESSHHHH
T ss_pred HHHHHHHHcC-CCEEEeCCHHHH
Confidence 3556677777 899999986643
No 53
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=34.47 E-value=21 Score=27.54 Aligned_cols=71 Identities=23% Similarity=0.173 Sum_probs=42.0
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCc-EEEecCCCCCCCCccCCCCcchHHHHHHHHHH
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIP-YIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVK 75 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip-~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k 75 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|++ .=. .+.|. .-..+.+.+.--+.|.+
T Consensus 223 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~~g~-~R~Pl------~~l~~~~~~~l~~~l~~ 295 (301)
T 3m5v_A 223 ALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLE-FRLPL------CSPSKENFAKIEEVMKK 295 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTHHHHHHTTSSSTTHHHHHHHHHTTSSSCCC-CCTTC------CCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHCCCCCCCC-cCCCC------CCCCHHHHHHHHHHHHH
Confidence 3556778999999999877755433221 23589999999985 321 22232 12244444444555655
Q ss_pred CCCe
Q psy1207 76 AGKV 79 (113)
Q Consensus 76 ~G~v 79 (113)
.|+.
T Consensus 296 ~~l~ 299 (301)
T 3m5v_A 296 YKIK 299 (301)
T ss_dssp SCCC
T ss_pred CcCc
Confidence 5553
No 54
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=33.87 E-value=49 Score=25.25 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=29.3
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH-----HHHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV-----HVKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~-----~v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 216 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 263 (292)
T 2vc6_A 216 DFQQACLNGDFAAALKLQDRLMPLHRALFLETNPAGAKYALQRLGRMR 263 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 345677899999998877654333221 1335788999999864
No 55
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=33.61 E-value=1.1e+02 Score=20.65 Aligned_cols=58 Identities=24% Similarity=0.226 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHH----CCCeeEEEcCCCceeeecC
Q psy1207 28 VHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVK----AGKVYATATEDMDALTFGT 94 (113)
Q Consensus 28 ~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k----~G~vd~V~SeDsD~l~fGa 94 (113)
....+.+..++..|-.-+..|-.+| ..-|||-..|.|.+ .|+-|.-+|-|+|.....+
T Consensus 31 kvlnelmdyikkqgakrvrisitar---------tkkeaekfaailikvfaelgyndinvtfdgdtvtveg 92 (106)
T 1qys_A 31 KVLNELMDYIKKQGAKRVRISITAR---------TKKEAEKFAAILIKVFAELGYNDINVTFDGDTVTVEG 92 (106)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECS---------SHHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEec---------chhHHHHHHHHHHHHHHHhCCcceeEEEcCCeEEEEe
Confidence 3456677778888988777777777 88999998888865 7999999999999886544
No 56
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=33.47 E-value=29 Score=27.06 Aligned_cols=70 Identities=27% Similarity=0.237 Sum_probs=41.5
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHC
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKA 76 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~ 76 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|++.-. .+.|. .-..+.|.+.--+.|.+.
T Consensus 238 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~l~~~~~~~~~K~al~~~G~~~~~-~R~Pl------~~l~~~~~~~l~~~l~~~ 310 (314)
T 3qze_A 238 DLCAAAMRGDAAAARAINDRLMPLHKALFIESNPIPVKWALHEMGLIPEG-IRLPL------TWLSPRCHEPLRQAMRQT 310 (314)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSCSB-CCTTS------CCCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHCCCCCCC-cCCCC------CCCCHHHHHHHHHHHHhc
Confidence 3556778999999998876644332211 12489999999986432 23332 122444445555566665
Q ss_pred CC
Q psy1207 77 GK 78 (113)
Q Consensus 77 G~ 78 (113)
|+
T Consensus 311 ~l 312 (314)
T 3qze_A 311 GV 312 (314)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 57
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=32.87 E-value=29 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=31.0
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHHH-----HHHHHHHHhhCC
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVHV-----KECKELLSLMGI 42 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~v-----~~~~~lL~~~Gi 42 (113)
++-++..+||.++|++..++...+...+. ..+|.+++.+|+
T Consensus 227 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~ 272 (309)
T 3fkr_A 227 PILEAWREGRHDDAYARYQAWLPLINHENRQSGILTAKALMREGGV 272 (309)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhCCC
Confidence 35577889999999998887666544433 238999999997
No 58
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=32.84 E-value=42 Score=25.59 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=28.9
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHH-----HHHHHHHHHHhhCCcE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSV-----HVKECKELLSLMGIPY 44 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~-----~v~~~~~lL~~~Gip~ 44 (113)
+-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 217 l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 263 (292)
T 2ojp_A 217 MCKLAAEGHFAEARVINERLMPLHNKLFVEPNPIPVKWACKELGLVA 263 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 45677899999998877654333221 1335788899999864
No 59
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=32.81 E-value=30 Score=26.44 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=30.8
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH------HHHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV------HVKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~------~v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++..++...+... ....+|..++.+|++.
T Consensus 206 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~ 254 (288)
T 2nuw_A 206 KQRDLIKQGKLDDALRLQELINRLADILRKYGSISAIYVLVNEFQGYDV 254 (288)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCC
Confidence 345677899999999887765544322 2455788999999864
No 60
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=32.65 E-value=87 Score=19.19 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhhCCc-EEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcC
Q psy1207 26 SSVHVKECKELLSLMGIP-YIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATE 85 (113)
Q Consensus 26 t~~~v~~~~~lL~~~Gip-~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~Se 85 (113)
++.....++.+|+..|+. +.. +....|| ...+....-.|.|+.+
T Consensus 14 ~~~~~~~l~~~L~~~g~~~v~~---------------~~~~~~a-~~~~~~~~~~dlvi~D 58 (129)
T 3h1g_A 14 SSTMRRIIKNTLSRLGYEDVLE---------------AEHGVEA-WEKLDANADTKVLITD 58 (129)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEE---------------ESSHHHH-HHHHHHCTTCCEEEEC
T ss_pred CHHHHHHHHHHHHHcCCcEEEE---------------eCCHHHH-HHHHHhCCCCCEEEEe
Confidence 566677788889999986 444 3333333 3344445456777753
No 61
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=32.62 E-value=44 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=29.2
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH-----HHHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV-----HVKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~-----~v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 216 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 263 (294)
T 2ehh_A 216 ELIRAALEGDFRRAREIHYYLHDLFKVLFIETNPIPVKTACWMLGMCE 263 (294)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 345677899999998877654433221 1334788899999874
No 62
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=32.51 E-value=41 Score=25.62 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=29.0
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHH-----HHHHHHHHHHhhCCcE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSV-----HVKECKELLSLMGIPY 44 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~-----~v~~~~~lL~~~Gip~ 44 (113)
+-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 215 l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 261 (289)
T 2yxg_A 215 MVNYALEGDFEKAREIHYKLFPLMKAMFIETNPIPVKTALNMMGRPA 261 (289)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTCSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 45677899999998887664433221 1334788999999874
No 63
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=32.11 E-value=47 Score=25.60 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=29.1
Q ss_pred hhHHHHcCCHHHHHHHhhhccCCCHH-----HHHHHHHHHHhhCCcE
Q psy1207 3 LTLFLLTGDAQEIDKFNRRLVRVSSV-----HVKECKELLSLMGIPY 44 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~~r~~~vt~~-----~v~~~~~lL~~~Gip~ 44 (113)
+-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 232 l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 278 (306)
T 1o5k_A 232 LCAEYFSGNLEKSREVHRKLRPLMKALFVETNPIPVKAALNLMGFIE 278 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 45677899999998877664433221 1345788899999864
No 64
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=31.97 E-value=30 Score=26.86 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=31.2
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH--------HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH--------VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~--------v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+...+ +.-+|..++.+|++.
T Consensus 225 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~~iK~al~~~G~~~ 275 (314)
T 3d0c_A 225 ALLEALEEGNQEKIWDVWEDVVPFEDLRAKHNNGNNVVIIKEAMEQLGLRA 275 (314)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHCCCCC
Confidence 3456778999999999888766654432 223688999999864
No 65
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=31.30 E-value=15 Score=25.00 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=25.0
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhCCcE---EEecCCCCCCCCccCCCCcchHHHHH
Q psy1207 18 FNRRLVRVSSVHVKECKELLSLMGIPY---IEVSRSPRLLPNFLGVLAPCEAEAQC 70 (113)
Q Consensus 18 ~~~r~~~vt~~~v~~~~~lL~~~Gip~---i~~~~~~~~~~~~~~~~AP~EAEAqc 70 (113)
++.|.-.++++..++++++++.+|++- +. .....-|.|+|.|++-
T Consensus 111 llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~--------~~q~~~C~p~~~~~~~ 158 (162)
T 1xki_A 111 LVGRDPKNNLEALEDFEKAAGARGLSTESILI--------PRQSETCSPGSAWSHP 158 (162)
T ss_dssp EEESSSSCCCCCHHHHHHHHHHTTCTTSCEEC--------CSCC------------
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEe--------cCCCCeeCCCCCCCCc
Confidence 456778899999999999999999973 33 1223346788888764
No 66
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=30.93 E-value=63 Score=25.50 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=41.3
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH------HHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHH
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV------HVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVK 75 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~------~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k 75 (113)
++-++..+||.++|++...+...+... ....+|..++.+|++.--..+.|. .-..+.+.+.--..|.+
T Consensus 250 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~iK~al~~~G~~~~g~~R~Pl------~~l~~~~~~~l~~~l~~ 323 (343)
T 2v9d_A 250 NLLKAWRDGDVAKAAGYHQTLLQIPQMYQLDTPFVNVIKEAIVLCGRPVSTHVLPPA------SPLDEPRKAQLKTLLQQ 323 (343)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHGGGGGGGSSSCHHHHHHHHHHTTCCCCCCCCTTS------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHCCCCCCCCcCCCC------CCCCHHHHHHHHHHHHH
Confidence 345677899999998887664433221 155678899999986412123332 11233344444455666
Q ss_pred CCCe
Q psy1207 76 AGKV 79 (113)
Q Consensus 76 ~G~v 79 (113)
.|+.
T Consensus 324 ~~~~ 327 (343)
T 2v9d_A 324 LKLC 327 (343)
T ss_dssp TTCC
T ss_pred hCcc
Confidence 6653
No 67
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=30.81 E-value=65 Score=23.24 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhhCCc-----EEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSLMGIP-----YIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~Gip-----~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
|+..+++-+.+.|+..|+. ++.| | -.+|-=.-+..|.++|-.|+|+.
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~V---P----------GafEiP~aa~~la~~~~yDavIa 77 (154)
T 1rvv_A 26 ITSKLLSGAEDALLRHGVDTNDIDVAWV---P----------GAFEIPFAAKKMAETKKYDAIIT 77 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEE---S----------SGGGHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEEC---C----------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 4678888999999999975 4441 1 23454466778889998999863
No 68
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=30.69 E-value=1.5e+02 Score=24.20 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhCCcEEEecCC----CCCCCCccCC
Q psy1207 29 HVKECKELLSLMGIPYIEVSRS----PRLLPNFLGV 60 (113)
Q Consensus 29 ~v~~~~~lL~~~Gip~i~~~~~----~~~~~~~~~~ 60 (113)
..+.+.++.+.+|+|++....+ |.-||.++|.
T Consensus 215 a~~~l~~lae~~~~Pv~~t~~gkg~~~~~hp~~~G~ 250 (549)
T 3eya_A 215 AHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGM 250 (549)
T ss_dssp CHHHHHHHHHHHTCCEEECGGGHHHHSSSCTTBCCC
T ss_pred HHHHHHHHHHHhCCCEEECCccCcCCCCCCcccccC
Confidence 3567889999999999986555 3456777764
No 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=30.67 E-value=39 Score=22.71 Aligned_cols=35 Identities=6% Similarity=-0.012 Sum_probs=23.5
Q ss_pred HHHcCCHHHHHHHhhhccCC--CHHHHHHHHHHHHhh
Q psy1207 6 FLLTGDAQEIDKFNRRLVRV--SSVHVKECKELLSLM 40 (113)
Q Consensus 6 ~~~~gd~~~a~~~~~r~~~v--t~~~v~~~~~lL~~~ 40 (113)
....|+.++|..++++.+.+ .+.+.+.++.+|+.+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ll~~l 150 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 34577788888887776554 455667777777643
No 70
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=30.61 E-value=21 Score=26.85 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
++...|.+.| ||+|+|++-|.+
T Consensus 253 ~~~~~l~~~G-VdgIiTD~P~~~ 274 (287)
T 2oog_A 253 ADMLRLNKYG-VDGVFTNFADKY 274 (287)
T ss_dssp HHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHHcC-CCEEEeCCHHHH
Confidence 4556677777 999999987653
No 71
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=30.49 E-value=66 Score=25.95 Aligned_cols=56 Identities=25% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHhhCCcEEEecCCCC-CCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCCCce
Q psy1207 33 CKELLSLMGIPYIEVSRSPR-LLPNFLGVLAPCEAEAQCAAMVKAGKVYATATEDMDA 89 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~-~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeDsD~ 89 (113)
+.++|+.+|+.++.+...|. .+|+-.--..| |.=..+..+++..-+|+.+.-|+|.
T Consensus 190 ~~~~l~~lG~~v~~~~~~pdg~f~~~~~~p~~-~~l~~l~~~v~~~~adlgia~DgDa 246 (455)
T 1wqa_A 190 LPYLLRELGCKVITVNAQPDGYFPARNPEPNE-ENLKEFMEIVKALGADFGVAQDGDA 246 (455)
T ss_dssp HHHHHHHHTCEEEEESCSCCTTCSSSCSCCCT-TTTHHHHHHHHHHTCSEEEEECTTS
T ss_pred HHHHHHHcCCEEEEECCcCCCCCCCCCCCCch-hHHHHHHHHHHHcCCCEEEEECCCC
Confidence 67789999999988776663 12211112334 3334555666666678888877763
No 72
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=30.48 E-value=92 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.114 Sum_probs=19.6
Q ss_pred cCCCH-HHHHHHHHHHHhhCCcEEE
Q psy1207 23 VRVSS-VHVKECKELLSLMGIPYIE 46 (113)
Q Consensus 23 ~~vt~-~~v~~~~~lL~~~Gip~i~ 46 (113)
..+++ ..+..+..+.+..||||+.
T Consensus 44 ~D~~~~~~~~~l~~lc~~~~VP~~~ 68 (121)
T 2lbw_A 44 GDIWPADVISHIPVLCEDHSVPYIF 68 (121)
T ss_dssp TTCSCTTHHHHHHHHHHHTCCCEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 34566 3688899999999999999
No 73
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=29.96 E-value=52 Score=25.15 Aligned_cols=43 Identities=9% Similarity=-0.039 Sum_probs=30.9
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH------HHHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV------HVKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~------~v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 208 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~ 256 (293)
T 1w3i_A 208 TIKKLAMERKIDEALKLQFLHDEVIEASRIFGSLSSNYVLTKYFQGYDL 256 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCC
Confidence 345677899999999887775544322 2445788999999865
No 74
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=29.86 E-value=38 Score=24.82 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=26.0
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCCCcee
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeDsD~l 90 (113)
..+.++..|+++..- -.- -+.+...|.+.| ||+|+|++-|.+
T Consensus 188 ~v~~~~~~G~~v~~W--------------TVn-~~~~~~~l~~~G-VdgIiTD~P~~~ 229 (238)
T 3no3_A 188 WVKDCKVLGMTSNVW--------------TVD-DPKLMEEMIDMG-VDFITTDLPEET 229 (238)
T ss_dssp HHHHHHHTTCEEEEE--------------CCC-SHHHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHCCCEEEEE--------------CCC-CHHHHHHHHHcC-CCEEECCCHHHH
Confidence 344556788886550 111 134566677777 899999986643
No 75
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=29.74 E-value=44 Score=25.70 Aligned_cols=43 Identities=23% Similarity=0.135 Sum_probs=32.0
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH-----HHHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV-----HVKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~-----~v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 219 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 266 (300)
T 3eb2_A 219 ALYELCKAQRWDEALMLQRKLWRVNEAFAKFNLAACIKAGLALQGYDV 266 (300)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTHHHHHHTTSCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHCCCCC
Confidence 355678899999999988776554332 3456899999999964
No 76
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=29.69 E-value=57 Score=26.43 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=31.7
Q ss_pred HHHHHHhhCCcEEEecCCCC-CCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCCCc
Q psy1207 33 CKELLSLMGIPYIEVSRSPR-LLPNFLGVLAPCEAEAQCAAMVKAGKVYATATEDMD 88 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~-~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeDsD 88 (113)
+.++|+.+|+.++.+...|. ..+|-.+ -++. - ..+..+++..-+|+.+.-|+|
T Consensus 188 ~~~ll~~lG~~v~~~~~~pDg~f~n~~~-~~~~-~-~~l~~~v~~~~adlgia~DgD 241 (443)
T 3i3w_A 188 FEALLDKFGINYVSIASNPDGLNINVGC-GATC-V-SNIKKAVKEQKADLGISLDGD 241 (443)
T ss_dssp HHHHHHHTTCEEEESSCCCCSSCTTTTC-STTC-H-HHHHHHHHHHTCSEEEEECTT
T ss_pred HHHHHHHcCCEEEEECCccCCCCCCCCC-CCCC-H-HHHHHHHHhcCCcEEEEECCC
Confidence 56788999999988666554 1222111 1222 2 234556666678888877766
No 77
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=29.68 E-value=1.6e+02 Score=24.17 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=43.9
Q ss_pred hccCCCHHHHHHHHHHHHhhCCcEEEecCC---CC-CCCCccCCCCc-----chHHHHHHHHHHCCCeeEEEcCCC
Q psy1207 21 RLVRVSSVHVKECKELLSLMGIPYIEVSRS---PR-LLPNFLGVLAP-----CEAEAQCAAMVKAGKVYATATEDM 87 (113)
Q Consensus 21 r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~---~~-~~~~~~~~~AP-----~EAEAqcA~L~k~G~vd~V~SeDs 87 (113)
+-.-++.++..++.+.++..|++..-.=+| .| -.|-+.|+.-- -...+|...|...|.||-|+=.|+
T Consensus 177 ~~TGLs~~~f~~~n~~~k~~Gi~t~AFI~g~~~~rGPwpl~eGLPTLE~HR~~~~~~~a~~L~~~g~iD~ViIGd~ 252 (385)
T 1x7f_A 177 KFTGLPYDYFIRCSERFKKHGIRSAAFITSHVANIGPWDINDGLCTLEEHRNLPIEVQAKHLWATGLIDDVIIGNA 252 (385)
T ss_dssp TTCSBCHHHHHHHHHHHHHTTCCCEEEECCSSCCBCSSSCCSCCBSBGGGTTSCHHHHHHHHHHTTSCCEEEECSB
T ss_pred CCCCCCHHHHHHHHHHHHHCCCcEEEEecCCccccCCccccCCCCchHHHCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 345678999999999999999995432222 12 01122332211 124688999999998888887764
No 78
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=29.52 E-value=78 Score=22.88 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhhCCc----EEEecCCCCCCCCccCCCCcchHH--HHHHHHHHCCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSLMGIP----YIEVSRSPRLLPNFLGVLAPCEAE--AQCAAMVKAGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~Gip----~i~~~~~~~~~~~~~~~~AP~EAE--AqcA~L~k~G~vd~V~S 84 (113)
|+..+++-+++.|+..|+. ++. -||-=| .-+..|.++|-.|+|+.
T Consensus 27 I~~~Ll~ga~~~l~~~Gv~~~i~v~~---------------VPGafEiP~aa~~la~~~~yDavIa 77 (156)
T 1c2y_A 27 VTRRLMEGALDTFKKYSVNEDIDVVW---------------VPGAYELGVTAQALGKSGKYHAIVC 77 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCEEEE---------------ESSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEE---------------CCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5678888899999999973 554 465555 66678889998999863
No 79
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=29.39 E-value=34 Score=26.08 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCCCcee
Q psy1207 25 VSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeDsD~l 90 (113)
++++.+.. ++..|++++.- -.- -+.+...|...| ||+|+|++=|.+
T Consensus 256 ~~~~~v~~----~~~~Gl~V~~W--------------TVn-~~~~~~~l~~~G-VDgIiTD~P~~~ 301 (313)
T 3l12_A 256 VTPELVAE----AHDLGLIVLTW--------------TVN-EPEDIRRMATTG-VDGIVTDYPGRT 301 (313)
T ss_dssp CCHHHHHH----HHHTTCEEEEB--------------CCC-SHHHHHHHHHHT-CSEEEESCHHHH
T ss_pred CCHHHHHH----HHHCCCEEEEE--------------cCC-CHHHHHHHHHcC-CCEEEeCCHHHH
Confidence 45555554 45679887761 111 123555666666 899999986653
No 80
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=29.25 E-value=67 Score=23.13 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhhCCc-----EEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSLMGIP-----YIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~Gip-----~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
|+..+++-+.+.|+..|++ ++.| | -.+|-=.-+..|.++|-.|+|+.
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~V---P----------GafEiP~aa~~la~~~~yDavIa 77 (154)
T 1hqk_A 26 LVDRLVEGAIDCIVRHGGREEDITLVRV---P----------GSWEIPVAAGELARKEDIDAVIA 77 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEE---S----------SGGGHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEEC---C----------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 4678888999999999975 4441 1 23444466778888998999863
No 81
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=29.00 E-value=73 Score=23.13 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHh-hCCc-----EEEecCCCCCCCCccCCCCcchHH--HHHHHHHHCCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSL-MGIP-----YIEVSRSPRLLPNFLGVLAPCEAE--AQCAAMVKAGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~-~Gip-----~i~~~~~~~~~~~~~~~~AP~EAE--AqcA~L~k~G~vd~V~S 84 (113)
|+..+++-+++.|+. .|++ ++. -||-=| .-+..|.++|-.|+|+.
T Consensus 31 I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~---------------VPGafEiP~aa~~la~~~~yDavIa 83 (159)
T 1kz1_A 31 AIEPLVKGAVETMIEKHDVKLENIDIES---------------VPGSWELPQGIRASIARNTYDAVIG 83 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEE---------------CSSGGGHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEE---------------CCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 456788889999999 8975 555 455444 66678888888898863
No 82
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=28.92 E-value=62 Score=20.88 Aligned_cols=26 Identities=15% Similarity=-0.021 Sum_probs=21.6
Q ss_pred ccCCCHHHHHHHHHHHHhhCCcEEEe
Q psy1207 22 LVRVSSVHVKECKELLSLMGIPYIEV 47 (113)
Q Consensus 22 ~~~vt~~~v~~~~~lL~~~Gip~i~~ 47 (113)
+...++.....+..+.+..+|||+.+
T Consensus 41 A~D~~~~~~~~i~~~c~~~~ip~~~~ 66 (101)
T 3on1_A 41 SSDAGIHTKKKLLDKCGSYQIPVKVV 66 (101)
T ss_dssp ETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred eCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 45667888888888899999999984
No 83
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=28.82 E-value=37 Score=21.76 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhCCcE
Q psy1207 27 SVHVKECKELLSLMGIPY 44 (113)
Q Consensus 27 ~~~v~~~~~lL~~~Gip~ 44 (113)
...++.|.+||+.|+.||
T Consensus 7 d~Ll~~c~kLLEkf~YpW 24 (65)
T 1zv1_A 7 DVFLDYCQKLLEKFRYPW 24 (65)
T ss_dssp HHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 557889999999999995
No 84
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.59 E-value=76 Score=23.73 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 27 SVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 27 ~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
+.+...+..+-+.+|++..+. .+-.+.|++.++..|.++| +++|+-
T Consensus 115 ~~~~~~~~~i~~ll~~~i~~~-----------~~~~~ee~~~~i~~l~~~G-~~vVVG 160 (225)
T 2pju_A 115 QETIPALVAFQKTFNLRLDQR-----------SYITEEDARGQINELKANG-TEAVVG 160 (225)
T ss_dssp SSCCHHHHHHHHHHTCCEEEE-----------EESSHHHHHHHHHHHHHTT-CCEEEE
T ss_pred chhhhHHHHHHHHhCCceEEE-----------EeCCHHHHHHHHHHHHHCC-CCEEEC
Confidence 344556677777788775541 1337999999999999999 555553
No 85
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=28.36 E-value=38 Score=26.39 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=30.2
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCc
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIP 43 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip 43 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|+.
T Consensus 238 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~l~~~~~~~~~K~al~~~G~~ 284 (315)
T 3si9_A 238 QLHAACLCSDYKTALKLNDLLMPLNRAVFIEPSPAGIKYAAAKLGLC 284 (315)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHCCCC
Confidence 3556788999999999877655443222 23589999999985
No 86
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=28.21 E-value=1.3e+02 Score=24.77 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHHHHhhCCcEEEecCCCCCCCCccC-CCCcch--HHHHHHHHHHCCCeeEEEcCCCc
Q psy1207 31 KECKELLSLMGIPYIEVSRSPRLLPNFLG-VLAPCE--AEAQCAAMVKAGKVYATATEDMD 88 (113)
Q Consensus 31 ~~~~~lL~~~Gip~i~~~~~~~~~~~~~~-~~AP~E--AEAqcA~L~k~G~vd~V~SeDsD 88 (113)
.-+.++|+.+|+.++.....|. ++|-+ ..-|.+ +=..+..+++..-+|+.+..|.|
T Consensus 208 ~~~~~il~~lG~~v~~~~~~pD--g~Fp~~~p~P~~~~~l~~l~~~v~~~~aDlgia~DgD 266 (485)
T 3uw2_A 208 PLATRLFKALGCELVELFTDID--GNFPNHHPDPAHPENLQDVIAKLKATDAEIGFAFDGD 266 (485)
T ss_dssp HHHHHHHHHTTCCEEEESCSCC--TTCCSSCSCTTSGGGGHHHHHHHHHSSCCEEEEECTT
T ss_pred HHHHHHHHHcCCeEEEecCccC--CCCCCCCcCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 3467889999999887666554 22322 334543 44567788888889998888777
No 87
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=28.15 E-value=1.1e+02 Score=18.73 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=26.2
Q ss_pred HHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcC
Q psy1207 32 ECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATE 85 (113)
Q Consensus 32 ~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~Se 85 (113)
++.+.|+..|+++..+|.+++ ..++..+..+.-..+.|.+++.
T Consensus 25 ~~l~~L~~~G~~~~i~S~~~~-----------~~~~~~l~~~~l~~~f~~i~~~ 67 (137)
T 2pr7_A 25 NLLAAAKKNGVGTVILSNDPG-----------GLGAAPIRELETNGVVDKVLLS 67 (137)
T ss_dssp HHHHHHHHTTCEEEEEECSCC-----------GGGGHHHHHHHHTTSSSEEEEH
T ss_pred HHHHHHHHCCCEEEEEeCCCH-----------HHHHHHHHHCChHhhccEEEEe
Confidence 344445667999988887643 3345555555555566666543
No 88
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=27.84 E-value=1.3e+02 Score=21.96 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=28.2
Q ss_pred HHHHHHHhhCCcEEEecCCCCCCCCccCCCC-cchHHHHHHHHHHCCCeeEEEcCC
Q psy1207 32 ECKELLSLMGIPYIEVSRSPRLLPNFLGVLA-PCEAEAQCAAMVKAGKVYATATED 86 (113)
Q Consensus 32 ~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~A-P~EAEAqcA~L~k~G~vd~V~SeD 86 (113)
-+..|++.+|.|.+.+|.- .-|--. +..++.-...| .+.+|+|+..+
T Consensus 128 ~~~~Ll~~~g~Pl~~TSAN------~sG~~~p~~~~~~~~~~l--~~~vd~ild~g 175 (206)
T 1k7j_A 128 IAQALLEALGEPMLSTSLM------LPGSEFTESDPEEIKDRL--EKQVDLIIHGG 175 (206)
T ss_dssp HHHHHHHHHCSCEEEEECB------CTTCSSBCCCHHHHHHHH--TTTCSEEEECC
T ss_pred HHHHHHHHhCCceEECCcc------cCCCCCCCCCHHHHHHHh--CCCCcEEEeCC
Confidence 3677888999999876652 222112 23344334444 67899888654
No 89
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=27.80 E-value=44 Score=25.64 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=30.4
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHHH-----HHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSVH-----VKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~~-----v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+...+ ...+|..++.+|++.
T Consensus 215 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 262 (297)
T 2rfg_A 215 QMQTATLQGDFREALRIHDLLAPLHEALFREPSPAGAKYAASLLGLCN 262 (297)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSTTHHHHHHHHHTTSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 3456778999999988877655443322 234788999999874
No 90
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=27.63 E-value=1.1e+02 Score=20.68 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCcEEEecCCCCCCCCccCCCCc-chHHHHHHHHHHCCCeeEEEcCCC
Q psy1207 32 ECKELLSLMGIPYIEVSRSPRLLPNFLGVLAP-CEAEAQCAAMVKAGKVYATATEDM 87 (113)
Q Consensus 32 ~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP-~EAEAqcA~L~k~G~vd~V~SeDs 87 (113)
++.+.|+..|+++..+|.++. .+ ..++..+..+--.++.|.|++.+.
T Consensus 41 ~~L~~L~~~g~~~~i~Tn~~~---------~~~~~~~~~l~~~gl~~~fd~i~~~~~ 88 (189)
T 3ib6_A 41 ETLEKVKQLGFKQAILSNTAT---------SDTEVIKRVLTNFGIIDYFDFIYASNS 88 (189)
T ss_dssp HHHHHHHHTTCEEEEEECCSS---------CCHHHHHHHHHHTTCGGGEEEEEECCT
T ss_pred HHHHHHHHCCCEEEEEECCCc---------cchHHHHHHHHhcCchhheEEEEEccc
Confidence 344456667899888776542 11 233333333333334677776654
No 91
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=27.62 E-value=37 Score=22.46 Aligned_cols=27 Identities=7% Similarity=-0.041 Sum_probs=24.4
Q ss_pred HHhhhccCCCHHHHHHHHHHHHhhCCc
Q psy1207 17 KFNRRLVRVSSVHVKECKELLSLMGIP 43 (113)
Q Consensus 17 ~~~~r~~~vt~~~v~~~~~lL~~~Gip 43 (113)
.++.|+-.++++..+++++.++.+|++
T Consensus 110 ~llsR~~~l~~e~~~~f~~~~~~~G~~ 136 (151)
T 1e5p_A 110 VVAGKGNALTPEENEILVQFAHEKKIP 136 (151)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 346788899999999999999999998
No 92
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=27.57 E-value=1.1e+02 Score=18.76 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHhhhccC-CCHHHHHHHHHHHHhhCCcEEE
Q psy1207 13 QEIDKFNRRLVR-VSSVHVKECKELLSLMGIPYIE 46 (113)
Q Consensus 13 ~~a~~~~~r~~~-vt~~~v~~~~~lL~~~Gip~i~ 46 (113)
++...++..... ++++.+.++...|..+||.++.
T Consensus 27 ~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd 61 (72)
T 2k6x_A 27 EDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVE 61 (72)
T ss_dssp HHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBC
T ss_pred HHHHHhCccccccCCHHHHHHHHHHHHHCCCcccc
Confidence 344444333222 6888888888888888888765
No 93
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=27.30 E-value=1.4e+02 Score=23.83 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=32.7
Q ss_pred ccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 22 LVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 22 ~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
..+++.+...++.+.|..+||++|.++- |. ..|.++|+ +..+.+.|.
T Consensus 19 ~~~~~~~~k~~ia~~L~~~Gv~~IE~g~-p~--------~~~~~~~~-~~~i~~~~~ 65 (382)
T 2ztj_A 19 KANFSTQDKVEIAKALDEFGIEYIEVTT-PV--------ASPQSRKD-AEVLASLGL 65 (382)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEECC-TT--------SCHHHHHH-HHHHHTSCC
T ss_pred CCCcCHHHHHHHHHHHHHcCcCEEEEcC-Cc--------CCHHHHHH-HHHHHhcCC
Confidence 4578888888888999999999999753 21 15777665 333444443
No 94
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=27.25 E-value=1.8e+02 Score=23.37 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCC
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATED 86 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeD 86 (113)
+..|++.+|.|.+.+|. |.-|--+|..++.-...| .|.+|+|+..+
T Consensus 129 ~~~Ll~~~g~PL~atSA------N~SG~p~~t~~~~v~~~l--~~~vd~iLdgg 174 (352)
T 2eqa_A 129 ALQLIRESGVPIAAPSA------NLATRPSPTKAEDVIVDL--NGRVDVIIDGG 174 (352)
T ss_dssp HHHHHHHHTSCEEECBS------SCTTSCCCCSHHHHHHHH--TTTSSEEEECC
T ss_pred HHHHHHHhCCcEEECcc------ccCCCCCCCCHHHHHHHh--cCcCCEEecCC
Confidence 67889999999987555 334444666666666666 57899988654
No 95
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=27.25 E-value=65 Score=22.66 Aligned_cols=36 Identities=8% Similarity=0.167 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 28 VHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 28 ~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
.+++.+..+.+.+|+.+|. --=|-+.|...|.+.|+
T Consensus 186 ~~~~~i~~~a~~lg~~via---------------eGVEt~~~~~~l~~~G~ 221 (235)
T 3kzp_A 186 LFIKAWANFAQKNKLDFVV---------------EGIETKETMTLLESHGV 221 (235)
T ss_dssp HHHHHHHHHHHHTTCEEEE---------------EEECSTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCEEEE---------------EEecCHHHHHHHHHcCC
Confidence 4567778888999999998 67788999999999986
No 96
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=27.05 E-value=1.1e+02 Score=24.83 Aligned_cols=54 Identities=28% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCcEEEecCCCCCCCCccCCC-Ccc--hHHHHHHHHHHCCCeeEEEcCCCce
Q psy1207 32 ECKELLSLMGIPYIEVSRSPRLLPNFLGVL-APC--EAEAQCAAMVKAGKVYATATEDMDA 89 (113)
Q Consensus 32 ~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~-AP~--EAEAqcA~L~k~G~vd~V~SeDsD~ 89 (113)
-+.++|+.+|++++.+...| +|...- -|. |+=..+..+++..-+|+.+.-|.|.
T Consensus 193 ~~~~~l~~lG~~v~~l~~~~----~f~~~~~~p~~~e~l~~l~~~v~~~~aDlgia~DgDa 249 (481)
T 4hjh_A 193 LLMYLLTTLGVEPVALGRSD----IFVPVDTEALRPEDIALLAQWGKSDRLDAIVSTDGDA 249 (481)
T ss_dssp HHHHHHHHTTCEEEEEEECS----SCCCCCTTSCCHHHHHHHHHHHTSTTCSEEEEECTTS
T ss_pred HHHHHHHHcCCeEEEecCCC----CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 35778999999988875433 333221 122 3446777888888899998877773
No 97
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=26.61 E-value=34 Score=23.96 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEE
Q psy1207 13 QEIDKFNRRLVRVSSVHVKECKELLSLMGIPYI 45 (113)
Q Consensus 13 ~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i 45 (113)
++.++...+.+..+..+++.+.++++..|+|.=
T Consensus 46 ~elk~iL~~~~~~~~~~i~~l~~~~~~~g~p~P 78 (171)
T 2rbd_A 46 EDLKNLIDEAIQAMQDENHQLEELLRSNGVGLP 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 568888888899999999999999999999963
No 98
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=26.56 E-value=1.9e+02 Score=21.24 Aligned_cols=73 Identities=7% Similarity=0.026 Sum_probs=43.7
Q ss_pred hHHHHcCCHHHHHHHh------hhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCC
Q psy1207 4 TLFLLTGDAQEIDKFN------RRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAG 77 (113)
Q Consensus 4 ~~~~~~gd~~~a~~~~------~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G 77 (113)
.+++..||.+...+.. .+...++...+.++++.++..|.-.-..+.+|- +...+++.+.+++.-..+|.+.|
T Consensus 230 ~~a~~~~d~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~G~ga~~sGaG~G--G~v~~l~~~~~~~~~~~~l~~~g 307 (317)
T 1kkh_A 230 DEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFGFGAKLTGAGGG--GCVIILVNEEKEKELLKELNKED 307 (317)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHSSEEEECSSSSS--EEEEEECCGGGHHHHHHHHHTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCceeEEeecCCC--CEEEEEechhhHHHHHHHHHhcC
Confidence 4566778876443221 223344555567777777767855556666652 23444555666888888888877
Q ss_pred C
Q psy1207 78 K 78 (113)
Q Consensus 78 ~ 78 (113)
.
T Consensus 308 ~ 308 (317)
T 1kkh_A 308 V 308 (317)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=26.25 E-value=67 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=15.2
Q ss_pred HHHHHHHHhhCCcEEEecCCC
Q psy1207 31 KECKELLSLMGIPYIEVSRSP 51 (113)
Q Consensus 31 ~~~~~lL~~~Gip~i~~~~~~ 51 (113)
.++.+.|+..|++...++.++
T Consensus 90 ~~~l~~L~~~g~~~~i~tn~~ 110 (216)
T 3kbb_A 90 REALEFVKSKRIKLALATSTP 110 (216)
T ss_dssp HHHHHHHHHTTCEEEEECSSC
T ss_pred HHHHHHHHHcCCCcccccCCc
Confidence 345556677899998887764
No 100
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.61 E-value=33 Score=20.99 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.8
Q ss_pred CCcchHHH-HHHHHHHCCCee
Q psy1207 61 LAPCEAEA-QCAAMVKAGKVY 80 (113)
Q Consensus 61 ~AP~EAEA-qcA~L~k~G~vd 80 (113)
+.|.|-.| |++.|...|+.|
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCD 23 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCC
T ss_pred CCHHHhhHHHHHHHHHcCCCc
Confidence 36888887 999999999876
No 101
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=25.52 E-value=64 Score=23.51 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=27.5
Q ss_pred HHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCCCcee
Q psy1207 31 KECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 31 ~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeDsD~l 90 (113)
.+..+.++..|++++.- -.-+ +.+..+|.+. ||+|+|++-+.+
T Consensus 188 ~~~v~~~~~~G~~v~~w--------------Tvn~-~~~~~~l~~~--vdgIiTD~P~~~ 230 (234)
T 1o1z_A 188 VEVLRSFRKKGIVIFVW--------------TLND-PEIYRKIRRE--IDGVITDEVELF 230 (234)
T ss_dssp HHHHHHHHHTTCEEEEE--------------SCCC-HHHHHHHGGG--CSEEEESCHHHH
T ss_pred HHHHHHHHHcCCEEEEe--------------CCCC-HHHHHHHHHh--CCEEEcCCHHHH
Confidence 45556677889997661 1111 2345666666 999999986643
No 102
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=25.40 E-value=45 Score=25.57 Aligned_cols=70 Identities=21% Similarity=0.169 Sum_probs=40.1
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCH-----HHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHC
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSS-----VHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKA 76 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~-----~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~ 76 (113)
++-++..+||.++|++...+...+.. .....+|..++.+|++.-. .+.|. .-..+.|.+.--+.|.+.
T Consensus 222 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~l~~~~~~~~~K~al~~~G~~~~~-~R~Pl------~~l~~~~~~~l~~~l~~~ 294 (297)
T 3flu_A 222 DMCRAALQGDIALARELNDRLIPIYDTMFCEPSPAAPKWAVSALGRCEPH-VRLPL------VPLTENGQAKVRAALKAS 294 (297)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTTSSSTTHHHHHHHHHTTSCCCC-CCTTS------CCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHCCCCCCC-CCCCC------CCCCHHHHHHHHHHHHHc
Confidence 34567789999999887665432211 1123589999999986433 33343 112334444444555555
Q ss_pred CC
Q psy1207 77 GK 78 (113)
Q Consensus 77 G~ 78 (113)
|+
T Consensus 295 ~~ 296 (297)
T 3flu_A 295 GQ 296 (297)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 103
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=25.33 E-value=43 Score=22.21 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhCCc
Q psy1207 18 FNRRLVRVSSVHVKECKELLSLMGIP 43 (113)
Q Consensus 18 ~~~r~~~vt~~~v~~~~~lL~~~Gip 43 (113)
++.|+-.++++..++++++++.+|++
T Consensus 117 llsR~~~~~~e~~~~f~~~~~~~G~~ 142 (157)
T 1dzk_A 117 LLGKGTDIEDQDLEKFKEVTRENGIP 142 (157)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 45788889999999999999999998
No 104
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Probab=25.26 E-value=1.3e+02 Score=26.48 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=34.5
Q ss_pred ccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 22 LVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 22 ~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
.+.+|.+.--++.+.|..+||++|.++--.. +|.|.|+. ..+.+.++
T Consensus 87 g~~~s~eeKl~Ia~~L~~lGVd~IEaGfP~a---------sp~D~e~v-~~i~~~~l 133 (644)
T 3hq1_A 87 IDPMSPARKRRMFDLLVRMGYKEIEVGFPSA---------SQTDFDFV-REIIEQGA 133 (644)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCSEEEEECTTT---------CHHHHHHH-HHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---------ChhHHHHH-HHHHhcCC
Confidence 4677888888999999999999999754111 57777753 45666654
No 105
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=24.96 E-value=19 Score=28.54 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchH---HHHHHHHHHCCCeeEEEcCCCceeeec
Q psy1207 27 SVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEA---EAQCAAMVKAGKVYATATEDMDALTFG 93 (113)
Q Consensus 27 ~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EA---EAqcA~L~k~G~vd~V~SeDsD~l~fG 93 (113)
.++...+|.+.+.+|||++.+++-.| ++..- ..+++-|--+ +-|..|.|+++|=
T Consensus 182 ~~isr~LK~lAkel~vpVi~lsQl~R---------~~e~r~dkrP~lsDLreS----g~IeqdAD~Vl~l 238 (338)
T 4a1f_A 182 AEISRELKTLARELEIPIIALVQLNR---------SLENRDDKRPILSDIKDS----GGIEQDADIVLFL 238 (338)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEECCG---------GGGGSSSCSCCGGGSEET----TEECCCCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecCc---------cccccccCCCChHhcccc----hhhhhhCcEEEEE
Confidence 35667788999999999999988655 22111 1223333333 5688999998874
No 106
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.78 E-value=1.4e+02 Score=21.01 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhCCcEEE
Q psy1207 27 SVHVKECKELLSLMGIPYIE 46 (113)
Q Consensus 27 ~~~v~~~~~lL~~~Gip~i~ 46 (113)
..+++.+++.++..|+.++.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~ 37 (306)
T 8abp_A 18 QTEWKFADKAGKDLGFEVIK 37 (306)
T ss_dssp HHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 34455566666666766655
No 107
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=24.75 E-value=1e+02 Score=23.24 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 28 VHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 28 ~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
.++..+..+.+.+|+.+|- ---|-++|...|.+.|+
T Consensus 220 ~iv~~ii~la~~lg~~vvA---------------EGVEt~~q~~~l~~lG~ 255 (294)
T 2r6o_A 220 QIVTTILALARGLGMEVVA---------------EGIETAQQYAFLRDRGC 255 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEE---------------CCCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEE---------------ecCCcHHHHHHHHHcCC
Confidence 4567788888899999988 66788888888888885
No 108
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=24.66 E-value=1e+02 Score=22.18 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEE
Q psy1207 29 HVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATA 83 (113)
Q Consensus 29 ~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~ 83 (113)
+...+..+-+.+|++..+. .+-.+.|++.++..|.++|+ +.|+
T Consensus 105 ~~~~~~~~~~ll~~~i~~~-----------~~~~~~e~~~~i~~l~~~G~-~vvV 147 (196)
T 2q5c_A 105 SIVDKHEIEAMLGVKIKEF-----------LFSSEDEITTLISKVKTENI-KIVV 147 (196)
T ss_dssp CSSCHHHHHHHHTCEEEEE-----------EECSGGGHHHHHHHHHHTTC-CEEE
T ss_pred hhhHHHHHHHHhCCceEEE-----------EeCCHHHHHHHHHHHHHCCC-eEEE
Confidence 3444555666666664431 12379999999999999994 4444
No 109
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=24.63 E-value=2e+02 Score=20.71 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=44.7
Q ss_pred hhHHHHcCCHHHHHHHh-------hhccCCCHHHHHHHHHHHHhhCC-cEEEecCCCCCCCCccCCCCc-chHHHHHHHH
Q psy1207 3 LTLFLLTGDAQEIDKFN-------RRLVRVSSVHVKECKELLSLMGI-PYIEVSRSPRLLPNFLGVLAP-CEAEAQCAAM 73 (113)
Q Consensus 3 ~~~~~~~gd~~~a~~~~-------~r~~~vt~~~v~~~~~lL~~~Gi-p~i~~~~~~~~~~~~~~~~AP-~EAEAqcA~L 73 (113)
+.+++.+||.+...+.. +. ..++...+.++++.+...|. ..-..+.+|- +...+++.. ..++.-...|
T Consensus 203 ~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~G--g~v~~l~~~~~~~~~~~~~l 279 (292)
T 2oi2_A 203 AEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSHGALGAKMSGGGLG--GCIIALVTNLTHAQELAERL 279 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTCSEEEEESSSSS--SEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhCCCceeeeccCCCC--cEEEEEecCchHHHHHHHHH
Confidence 45778889986654432 22 34544556777777777785 4556666652 223333332 4577778888
Q ss_pred HHCCCe
Q psy1207 74 VKAGKV 79 (113)
Q Consensus 74 ~k~G~v 79 (113)
.+.|..
T Consensus 280 ~~~~~~ 285 (292)
T 2oi2_A 280 EEKGAV 285 (292)
T ss_dssp HHHTCS
T ss_pred HhcCcc
Confidence 888763
No 110
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.36 E-value=33 Score=26.42 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=29.3
Q ss_pred hhhHHHHcCCHHHHHHHhhhccCCCHH-----HHHHHHHHHHhhCCcE
Q psy1207 2 ELTLFLLTGDAQEIDKFNRRLVRVSSV-----HVKECKELLSLMGIPY 44 (113)
Q Consensus 2 ~~~~~~~~gd~~~a~~~~~r~~~vt~~-----~v~~~~~lL~~~Gip~ 44 (113)
++-++..+||.++|++...+...+... ....+|..++.+|++.
T Consensus 227 ~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~ 274 (301)
T 1xky_A 227 EMIAAFQAGEFKKAQKLHQLLVRVTDSLFMAPSPTPVKTALQMVGLDV 274 (301)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 345677899999998877654333221 1335788999999864
No 111
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=24.23 E-value=45 Score=22.15 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhCCcE
Q psy1207 27 SVHVKECKELLSLMGIPY 44 (113)
Q Consensus 27 ~~~v~~~~~lL~~~Gip~ 44 (113)
...++.|.+||+.|+.||
T Consensus 7 e~ll~~c~kLLEkF~YpW 24 (80)
T 2jz1_A 7 DVFLDYCQKLLEKFRYPW 24 (80)
T ss_dssp HHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 456788999999999995
No 112
>3tlq_A Regulatory protein YDIV; anti-FLHD4C2 factor, repress motility, transcription; 1.91A {Escherichia coli}
Probab=23.93 E-value=81 Score=22.80 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 26 SSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 26 t~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
...+++.+..+.+.+|+.++- =-=|-++|..+|.+.|+
T Consensus 183 ~~~iv~~ii~~a~~l~~~vvA---------------EGVEt~~q~~~l~~lG~ 220 (242)
T 3tlq_A 183 FEPFIRAIQAQISPCCNCIIA---------------GGIDTAEILAQITPFDF 220 (242)
T ss_dssp GHHHHHHHHHHHTTTCSEEEE---------------CCCCSHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHcCCEEEE---------------EeCCcHHHHHHHHHcCC
Confidence 355677788899999999998 56789999999999985
No 113
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=23.59 E-value=73 Score=23.00 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhhCCc-----EEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSLMGIP-----YIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~Gip-----~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
|+..+++-+.+.|+..|+. ++. =| -.+|-=.-+..|.++|-.|+|+.
T Consensus 24 I~~~Ll~gA~~~l~~~gv~~~~i~v~~---VP----------GafEiP~aa~~la~~~~yDavIa 75 (158)
T 1di0_A 24 IVDEARKSFVAELAAKTGGSVEVEIFD---VP----------GAYEIPLHAKTLARTGRYAAIVG 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEE---ES----------SGGGHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEE---CC----------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 5678888999999999975 344 11 23444466778889999999863
No 114
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=23.43 E-value=48 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.8
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhCCc
Q psy1207 18 FNRRLVRVSSVHVKECKELLSLMGIP 43 (113)
Q Consensus 18 ~~~r~~~vt~~~v~~~~~lL~~~Gip 43 (113)
++.|+-.++++..+++++.++.+|++
T Consensus 116 llsR~~~l~~e~~~~f~~~~~~~G~~ 141 (156)
T 1bj7_A 116 GLAKGTSFTPEELEKYQQLNSERGVP 141 (156)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHHTCC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 45788889999999999999999998
No 115
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=23.39 E-value=1.4e+02 Score=23.94 Aligned_cols=55 Identities=22% Similarity=0.175 Sum_probs=35.9
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCC-CCcch-HHHHHHHHHHCCCeeEEEcCCCce
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGV-LAPCE-AEAQCAAMVKAGKVYATATEDMDA 89 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~-~AP~E-AEAqcA~L~k~G~vd~V~SeDsD~ 89 (113)
+.++|+.+|+.++.+...|. ++|-+. --|.+ .=..+..+++..-+|+.+.-|.|.
T Consensus 188 ~~~~l~~lG~~v~~~~~~pD--g~F~~~~p~p~~~~l~~l~~~v~~~~adlgia~DgDa 244 (455)
T 2f7l_A 188 TPLVARALGCKIYTINGNLD--PLFSARQPEPTFDSLKETAEVVKTLKVDLGVAHDGDA 244 (455)
T ss_dssp HHHHHHHTTCEEEEBSCSCC--TTCTTSCSSCCTTTSHHHHHHHHHTTCSEEEECCTTS
T ss_pred HHHHHHHcCCEEEEECCcCC--CCCCCCCcCcchHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 67889999999988776653 222221 11333 224556677777789998888874
No 116
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=23.34 E-value=1.6e+02 Score=25.80 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCCCcee
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeDsD~l 90 (113)
...|++.+|.|.+.+|.- .-|--.+..++.-...| .+.||+|+..|-++.
T Consensus 218 ~~~Ll~~~g~PLv~TSAN------~SG~p~~~~~~e~~~~l--~~~vD~iLd~gr~i~ 267 (657)
T 3ttc_A 218 QHLLLQELQCPLVMTSGN------LSGKPPAISNEQALEDL--QGIADGFLIHNRDIV 267 (657)
T ss_dssp HHHHHHHHCSCEEEEECC------CTTSCCCCSHHHHHHHH--TTTCSEEEEESSCCC
T ss_pred HHHHHHHcCCCeEECCcc------cCCCCCCCCHHHHHHHh--cCCCeEEEECCCccc
Confidence 456788899998887752 22222334343333333 478999987775543
No 117
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=22.95 E-value=51 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=23.8
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhCCc
Q psy1207 18 FNRRLVRVSSVHVKECKELLSLMGIP 43 (113)
Q Consensus 18 ~~~r~~~vt~~~v~~~~~lL~~~Gip 43 (113)
++.|+-.++++..++++++++.+|++
T Consensus 118 llsR~~~~~~e~~~~f~~~~~~~G~~ 143 (160)
T 2hlv_A 118 LFVKGLNVEDEDLEKFWKLTEDKGID 143 (160)
T ss_dssp EEECSSSCCHHHHHHHHHHHHHTTCC
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCC
Confidence 45788889999999999999999999
No 118
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=22.90 E-value=1.2e+02 Score=20.27 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=26.2
Q ss_pred HHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcCC
Q psy1207 32 ECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATED 86 (113)
Q Consensus 32 ~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~SeD 86 (113)
++.+.|+..|+++..++.++ ....+..+..+.-.++.|.+++.|
T Consensus 111 ~~l~~l~~~g~~~~i~s~~~-----------~~~~~~~l~~~~l~~~f~~~~~~~ 154 (237)
T 4ex6_A 111 EGLDRLSAAGFRLAMATSKV-----------EKAARAIAELTGLDTRLTVIAGDD 154 (237)
T ss_dssp HHHHHHHHTTEEEEEECSSC-----------HHHHHHHHHHHTGGGTCSEEECTT
T ss_pred HHHHHHHhCCCcEEEEcCCC-----------hHHHHHHHHHcCchhheeeEEeCC
Confidence 34445666799988877753 233455555544444567777655
No 119
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=22.84 E-value=1.1e+02 Score=24.58 Aligned_cols=55 Identities=22% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccC-CCCcch--HHHHHHHHHHCCCeeEEEcCCCce
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLG-VLAPCE--AEAQCAAMVKAGKVYATATEDMDA 89 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~-~~AP~E--AEAqcA~L~k~G~vd~V~SeDsD~ 89 (113)
+.++|+.+|+.++.....|. ++|.+ ..-|.+ +=..+..+++..-+|..+.-|+|.
T Consensus 188 ~~~ll~~lG~~v~~~~~~pD--g~f~~~~p~p~~~~~l~~l~~~v~~~~adlgia~DgDa 245 (463)
T 1p5d_X 188 APQLIEALGCSVIPLYCEVD--GNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDG 245 (463)
T ss_dssp HHHHHHHHHEEEEEESCSCC--TTCCSSCSCTTSGGGGHHHHHHHHHTTCSEEEEECTTS
T ss_pred HHHHHHHcCCeEEEEeCccC--CCCCCCCcCCCCHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 66788999999888766653 23333 222443 334566677777788888887773
No 120
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=22.63 E-value=57 Score=23.66 Aligned_cols=47 Identities=21% Similarity=0.327 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhhC-Cc-----EEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSLMG-IP-----YIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~G-ip-----~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
|+..+++-+.+.|+..| ++ ++.| | -.+|-=.-+..|.++|-.|+|+.
T Consensus 26 I~~~Ll~gA~~~l~~~G~v~~~~i~v~~V---P----------GafEiP~aa~~la~~~~yDavIa 78 (156)
T 3nq4_A 26 INDSLLDGAVDALTRIGQVKDDNITVVWV---P----------GAYELPLATEALAKSGKYDAVVA 78 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTSEEEEEE---S----------STTTHHHHHHHHHHHCSCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEc---C----------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 56788889999999999 63 3441 1 24565577778888898898863
No 121
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=22.58 E-value=2e+02 Score=20.20 Aligned_cols=18 Identities=0% Similarity=-0.267 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhCCcEE
Q psy1207 28 VHVKECKELLSLMGIPYI 45 (113)
Q Consensus 28 ~~v~~~~~lL~~~Gip~i 45 (113)
.++.-+++.++..|+.++
T Consensus 21 ~~~~g~~~~~~~~g~~~~ 38 (303)
T 3d02_A 21 RMGEGVVQAGKEFNLNAS 38 (303)
T ss_dssp HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 344555556666666654
No 122
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=22.39 E-value=1.4e+02 Score=21.73 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhhCCc-----EEEecCCCCCCCCccCCCCcchHH--HHHHHHHH-----CCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSLMGIP-----YIEVSRSPRLLPNFLGVLAPCEAE--AQCAAMVK-----AGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~Gip-----~i~~~~~~~~~~~~~~~~AP~EAE--AqcA~L~k-----~G~vd~V~S 84 (113)
|+..+++-+++.|+..|+. ++. -||-=| .-+..|.+ .|-.|+||.
T Consensus 30 I~~~Ll~gA~~~L~~~Gv~~~~i~v~~---------------VPGafEiP~aak~la~~~~~~~~~yDavIa 86 (168)
T 1ejb_A 30 IIDALVKGAIERMASLGVEENNIIIET---------------VPGSYELPWGTKRFVDRQAKLGKPLDVVIP 86 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEE---------------CSSGGGHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEE---------------CCcHHHHHHHHHHHHhhccccCCCcCEEEE
Confidence 4678888999999999975 444 455444 55566666 678898863
No 123
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=22.30 E-value=54 Score=25.48 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=34.3
Q ss_pred hccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCc
Q psy1207 21 RLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAP 63 (113)
Q Consensus 21 r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP 63 (113)
+.+.+..+.+-++-++...-.|.|+.++|-|||-++++..+|.
T Consensus 35 ~~iyP~~~~iF~af~~~p~~~vKVVIlGQDPYh~~gqA~GLaF 77 (237)
T 3uf7_A 35 VTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAF 77 (237)
T ss_dssp CCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCCSSSS
T ss_pred CeecCChHHHHHHHhccCccceEEEEEecCCCCCCCcccceee
Confidence 3566777888888777777889999999999998888775543
No 124
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=22.15 E-value=1.1e+02 Score=21.93 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 28 VHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 28 ~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
.++..+..+.+.+|+++|. --=|-+.|...|.+.|+
T Consensus 196 ~~~~~i~~~a~~~g~~via---------------eGVEt~~~~~~l~~lG~ 231 (259)
T 3s83_A 196 KIVRSVVKLGQDLDLEVVA---------------EGVENAEMAHALQSLGC 231 (259)
T ss_dssp HHHHHHHHHHHHTTCEEEE---------------CCCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCeEEE---------------EeCCCHHHHHHHHhcCC
Confidence 3466677888889999888 56678888888888875
No 125
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=22.14 E-value=43 Score=24.83 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCeeEEEcCCCcee
Q psy1207 68 AQCAAMVKAGKVYATATEDMDAL 90 (113)
Q Consensus 68 AqcA~L~k~G~vd~V~SeDsD~l 90 (113)
.+...|.+.| ||+|+|++-|.+
T Consensus 236 ~~~~~l~~~G-VDgIiTD~P~~~ 257 (285)
T 1xx1_A 236 STTKAALDVG-VDGIMTNYPNVL 257 (285)
T ss_dssp HHHHHHHHHT-CSEEEESCHHHH
T ss_pred HHHHHHHhcC-CCEEEeCCHHHH
Confidence 3455666666 999999998864
No 126
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=22.14 E-value=86 Score=22.47 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 27 SVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 27 ~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
..++..+..+.+.+|+.+|. --=|-++|...|.+.|+
T Consensus 199 ~~~l~~i~~~a~~l~~~via---------------eGVEt~~~~~~l~~~G~ 235 (250)
T 4f3h_A 199 QEKIREITSRAQPTGILTVA---------------EFVADAQSMSSFFTAGV 235 (250)
T ss_dssp HHHHHHTHHHHHHHTCEEEE---------------CCCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCEEEE---------------eccCCHHHHHHHHHcCC
Confidence 45677788899999999999 66788999999999885
No 127
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=22.08 E-value=66 Score=25.06 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcC
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATE 85 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~Se 85 (113)
++.+-+..|||++++...+. ...|.|++...+.+.--+|+|+.-
T Consensus 135 ~~~~A~~~gIp~~~~~~~~~---------~r~~~~~~~~~~l~~~~~Dlivla 178 (292)
T 3lou_A 135 FAPLAAQHGLPFRHFPITAD---------TKAQQEAQWLDVFETSGAELVILA 178 (292)
T ss_dssp THHHHHHTTCCEEECCCCSS---------CHHHHHHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHcCCCEEEeCCCcC---------CHHHHHHHHHHHHHHhCCCEEEec
Confidence 45678899999998432211 234567666655555557877653
No 128
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=22.08 E-value=1.1e+02 Score=22.12 Aligned_cols=37 Identities=19% Similarity=0.014 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCC
Q psy1207 27 SVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGK 78 (113)
Q Consensus 27 ~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~ 78 (113)
..++..+..+.+.+|+.+|. .--|-+.|...|.+.|+
T Consensus 208 ~~~l~~ii~~~~~~~~~via---------------eGVEt~~~~~~l~~lG~ 244 (268)
T 3hv8_A 208 QEILKGLIAELHEQQKLSIV---------------PFVESASVLATLWQAGA 244 (268)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---------------CCCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCEEE---------------EeeCCHHHHHHHHHcCC
Confidence 45677788889999999999 77899999999999886
No 129
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=21.87 E-value=58 Score=25.28 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=27.4
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcC
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATE 85 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~Se 85 (113)
++.+-+..|||++++...+. ...|.|+++..+.+.--+|.|+.-
T Consensus 130 ~~~~A~~~gIp~~~~~~~~~---------~r~~~~~~~~~~l~~~~~Dlivla 173 (286)
T 3n0v_A 130 LEPLAHWHKIPYYHFALDPK---------DKPGQERKVLQVIEETGAELVILA 173 (286)
T ss_dssp THHHHHHTTCCEEECCCBTT---------BHHHHHHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHcCCCEEEeCCCcC---------CHHHHHHHHHHHHHhcCCCEEEec
Confidence 45678899999998432211 234567666666665557877653
No 130
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=21.60 E-value=71 Score=23.05 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhhCCc-----EEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 25 VSSVHVKECKELLSLMGIP-----YIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 25 vt~~~v~~~~~lL~~~Gip-----~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
|+..+++-+.+.|+..|++ ++. =| -.+|-=.-+..|.++|-.|+|+.
T Consensus 25 I~~~Ll~gA~~~l~~~Gv~~~~i~v~~---VP----------GafEiP~aa~~la~~~~yDavIa 76 (157)
T 2obx_A 25 IVDQCVSAFEAEMADIGGDRFAVDVFD---VP----------GAYEIPLHARTLAETGRYGAVLG 76 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEE---ES----------SGGGHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEE---CC----------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 5678889999999999975 333 11 23444466678888888999863
No 131
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=21.36 E-value=1.1e+02 Score=23.98 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcC
Q psy1207 33 CKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATE 85 (113)
Q Consensus 33 ~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~Se 85 (113)
++.+-+..|||++++..... ...|.|+++..+.+.--+|.|+.-
T Consensus 145 ~~~~A~~~gIp~~~~~~~~~---------~r~~~~~~~~~~l~~~~~DliVla 188 (302)
T 3o1l_A 145 LRSMVEWHDIPYYHVPVDPK---------DKEPAFAEVSRLVGHHQADVVVLA 188 (302)
T ss_dssp THHHHHTTTCCEEECCCCSS---------CCHHHHHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHcCCCEEEcCCCcC---------CHHHHHHHHHHHHHHhCCCEEEHh
Confidence 45677899999999322110 234677777777666667887653
No 132
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=21.24 E-value=59 Score=21.51 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.6
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhCCc
Q psy1207 18 FNRRLVRVSSVHVKECKELLSLMGIP 43 (113)
Q Consensus 18 ~~~r~~~vt~~~v~~~~~lL~~~Gip 43 (113)
++.|+-.++++..++++++++.+|++
T Consensus 116 llsR~~~~~~~~~~~f~~~~~~~G~~ 141 (159)
T 1ew3_A 116 FYAREPDVSPEIKEEFVKIVQKRGIV 141 (159)
T ss_dssp EEESSSSCCHHHHHHHHHHHHHTTCC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 45788899999999999999999998
No 133
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=21.12 E-value=1.3e+02 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred ccCCCHHHHHHHHHHHHhhCCcEEEec
Q psy1207 22 LVRVSSVHVKECKELLSLMGIPYIEVS 48 (113)
Q Consensus 22 ~~~vt~~~v~~~~~lL~~~Gip~i~~~ 48 (113)
.+.+|.+.-.++.+.|..+||++|.++
T Consensus 55 ~~~~s~eeKl~Ia~~L~~~Gv~~IEvG 81 (423)
T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELT 81 (423)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 456788888889999999999999985
No 134
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=21.11 E-value=2.5e+02 Score=20.70 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEc
Q psy1207 26 SSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATAT 84 (113)
Q Consensus 26 t~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~S 84 (113)
...+++-+++.++.+|+.++.+... .+.+.+..+..|.++| +|+|+.
T Consensus 22 ~~~~~~Gi~~~~~~~g~~~~~~~~~-----------~~~~~~~~l~~l~~~~-~dgIi~ 68 (318)
T 2fqx_A 22 NQQVWEGISRFAQENNAKCKYVTAS-----------TDAEYVPSLSAFADEN-MGLVVA 68 (318)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECC-----------SGGGHHHHHHHHHHTT-CSEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeCC-----------CHHHHHHHHHHHHHcC-CCEEEE
Confidence 4566777888888899887663221 2333445566777766 787774
No 135
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=20.63 E-value=42 Score=20.06 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=10.9
Q ss_pred HHcCCHHHHHHHhhhccCCC
Q psy1207 7 LLTGDAQEIDKFNRRLVRVS 26 (113)
Q Consensus 7 ~~~gd~~~a~~~~~r~~~vt 26 (113)
...|+.++|..++++.+.+.
T Consensus 64 ~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 64 QGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 34556666666665555443
No 136
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=20.62 E-value=1.6e+02 Score=18.89 Aligned_cols=20 Identities=30% Similarity=0.112 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhCCcEEEecC
Q psy1207 30 VKECKELLSLMGIPYIEVSR 49 (113)
Q Consensus 30 v~~~~~lL~~~Gip~i~~~~ 49 (113)
+.++.+.|+..|+++..++.
T Consensus 87 ~~~~l~~l~~~g~~~~i~t~ 106 (190)
T 2fi1_A 87 VSDLLEDISNQGGRHFLVSH 106 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHCCCcEEEEEC
Confidence 44455555667888877665
No 137
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=20.39 E-value=1.5e+02 Score=19.43 Aligned_cols=52 Identities=8% Similarity=0.002 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCeeEEEcC------CC--ceeeecCCe
Q psy1207 30 VKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVYATATE------DM--DALTFGTNI 96 (113)
Q Consensus 30 v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd~V~Se------Ds--D~l~fGa~~ 96 (113)
++-++.+.+.+|+++-. -+...-+.+-...++|-+|++++. .. ..+.|..+.
T Consensus 32 ~dl~~~i~~~~g~~~~~---------------~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~~s~p~ 91 (233)
T 1ii5_A 32 LDVWRAVAESQKWNSEY---------------VRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPY 91 (233)
T ss_dssp HHHHHHHHHHHTCCEEE---------------EECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEEECCCC
T ss_pred HHHHHHHHHHcCCcEEE---------------EEeCCHHHHHHHHHCCCcCEEEeeeecCccccccceeEEccce
Confidence 44456677788998766 222122455666789999997642 12 556666553
No 138
>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.1.19.2 PDB: 1cb7_B* 1i9c_B*
Probab=20.33 E-value=2.5e+02 Score=23.78 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=51.8
Q ss_pred CHHHHHHHhhhccCCCHHHHHHHHHHHHhhCCcEEEecCCCCCCCCccCCCCcchHHHHHHHHHHCCCee-EEEcCCCce
Q psy1207 11 DAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAGKVY-ATATEDMDA 89 (113)
Q Consensus 11 d~~~a~~~~~r~~~vt~~~v~~~~~lL~~~Gip~i~~~~~~~~~~~~~~~~AP~EAEAqcA~L~k~G~vd-~V~SeDsD~ 89 (113)
|.+++-.|.|. .+.++..-+.+.+. +.-|.|.++ || .|+..|.|--+-..+|..+|-.| +-++-|+-.
T Consensus 31 d~~e~v~y~~~-~~~~k~f~~~l~~~-~~~~~~liq----p~-----aGf~t~eet~~~~~~L~~~G~~~vLsva~D~~T 99 (483)
T 1ccw_B 31 DLQEAVDYLKK-IPAEKNFAEKLVLA-KKKGITMAQ----PR-----AGVALLDEHIELLRYLQDEGGADFLPSTIDAYT 99 (483)
T ss_dssp CHHHHHHHHHT-SCGGGCHHHHHHHH-HHHTCCEEE----CC-----CCCSSHHHHHHHHHHHHHTTCCSSEEEEBCTTG
T ss_pred CHHHHHHHHhc-CCcccchHHHHHHH-HHcCCeeec----CC-----CCCCCHHHHHHHHHHHHhCCCCCeeccccCccc
Confidence 67888888655 44444333333332 367889999 55 78889999999999999999999 888888876
Q ss_pred ee
Q psy1207 90 LT 91 (113)
Q Consensus 90 l~ 91 (113)
..
T Consensus 100 q~ 101 (483)
T 1ccw_B 100 RQ 101 (483)
T ss_dssp GG
T ss_pred hh
Confidence 54
No 139
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=20.08 E-value=59 Score=21.90 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=23.9
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhCCc
Q psy1207 18 FNRRLVRVSSVHVKECKELLSLMGIP 43 (113)
Q Consensus 18 ~~~r~~~vt~~~v~~~~~lL~~~Gip 43 (113)
++.|+-.++++..++++++++.+|++
T Consensus 113 llsR~~~~~~e~~~~f~~~~~~~G~~ 138 (160)
T 3sao_A 113 LYSRSREVSPTAMAIFRKLARERNYT 138 (160)
T ss_dssp EEESSSSCCHHHHHHHHHHHHTTTCC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 45788899999999999999999998
Done!