RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1207
         (113 letters)



>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 217

 Score = 68.2 bits (166), Expect = 6e-16
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 17  KFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKA 76
           K+ +   RV    V   K LLS MGIP+++                P E EAQ A M   
Sbjct: 116 KYAQAAGRVDEYIVDSAKTLLSYMGIPFVDA---------------PSEGEAQAAYMAAK 160

Query: 77  GKVYATATEDMDALTFGTNILLR 99
           G V  T ++D D+L FG+  L R
Sbjct: 161 GDVEYTGSQDYDSLLFGSPRLAR 183


>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 219

 Score = 67.9 bits (165), Expect = 7e-16
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 15/94 (15%)

Query: 6   FLLTGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCE 65
            L  G+ +E  K+ +R  RV+ + +++ K+LL LMGIP ++                P E
Sbjct: 107 ALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQA---------------PSE 151

Query: 66  AEAQCAAMVKAGKVYATATEDMDALTFGTNILLR 99
            EAQ A M   G VYA+A++D D+L FG   L+R
Sbjct: 152 GEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVR 185


>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 207

 Score = 67.8 bits (165), Expect = 7e-16
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 15/91 (16%)

Query: 9   TGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEA 68
             D +E  K+ +R+  ++   V+ CK LLSLMGIPY+E                P E EA
Sbjct: 110 KEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEA---------------PSEGEA 154

Query: 69  QCAAMVKAGKVYATATEDMDALTFGTNILLR 99
           Q + M K G V+A  ++D DAL +G   ++R
Sbjct: 155 QASYMAKKGDVWAVVSQDYDALLYGAPRVVR 185


>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 216

 Score = 65.2 bits (158), Expect = 8e-15
 Identities = 50/91 (54%), Positives = 61/91 (67%), Gaps = 15/91 (16%)

Query: 9   TGDAQEIDKFNRRLVRVSSVHVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEA 68
            G  QE++KF +RLV+V+  H  ECK LLSLMGIPY++                P EAEA
Sbjct: 116 AGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDA---------------PSEAEA 160

Query: 69  QCAAMVKAGKVYATATEDMDALTFGTNILLR 99
            CAA+VKAGKVYA ATEDMD LTFG+ +L+R
Sbjct: 161 SCAALVKAGKVYAAATEDMDCLTFGSPVLMR 191


>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase]
          ligase C-terminal domain {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 47

 Score = 25.2 bits (55), Expect = 0.61
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 10 GDAQEIDKFNRRLVRVSSVHVKE 32
          G A++ID F R ++R+ S  VK+
Sbjct: 14 GIAEDIDDFGRLIIRLDSGEVKK 36


>d1ou0a_ c.23.17.1 (A:) Precorrin-8x methylmutase related protein
           {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 190

 Score = 25.6 bits (56), Expect = 1.4
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 25  VSSVHVKECKELLSLMGIPYI 45
           V  ++  + KE L    I YI
Sbjct: 147 VGFINASKAKEGLVSSHIEYI 167


>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
           [TaxId: 562]}
          Length = 177

 Score = 25.3 bits (55), Expect = 1.5
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 31  KECKELLSLMGIPYIE 46
           +E + LL+    P+ +
Sbjct: 162 EEGRALLAAFDFPFRK 177


>d1v9ca_ c.23.17.1 (A:) Precorrin-8x methylmutase {Thermus
           thermophilus [TaxId: 274]}
          Length = 204

 Score = 25.6 bits (56), Expect = 1.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 25  VSSVHVKECKELLSLMGIPYI 45
           V  V+V E K  L    +P+I
Sbjct: 156 VGFVNVLEAKRALMEAPVPWI 176


>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 179

 Score = 25.3 bits (55), Expect = 1.6
 Identities = 7/16 (43%), Positives = 14/16 (87%)

Query: 31  KECKELLSLMGIPYIE 46
           +E +ELL+L+G+P+ +
Sbjct: 164 EEARELLALLGMPFQK 179


>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
           [TaxId: 274]}
          Length = 180

 Score = 25.3 bits (55), Expect = 1.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 31  KECKELLSLMGIPYIE 46
           +E + LL L+G P+ +
Sbjct: 165 EEARALLELLGFPFRK 180


>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 177

 Score = 24.9 bits (54), Expect = 2.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 31  KECKELLSLMGIPYIE 46
           +E + LL  MG+P+ +
Sbjct: 162 EEARALLQSMGLPFRK 177


>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase
          (phosphoribosylaminoimidazole carboxylase, PurE)
          {Acetobacter aceti [TaxId: 435]}
          Length = 159

 Score = 23.7 bits (51), Expect = 5.8
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 29 HVKECKELLSLMGIPYIEVSRSPRLLPNFLGVLAPCEAEAQCAAMVKAG 77
           ++    LL+ + IP+  +  S    P+ L   A   A  +   ++ AG
Sbjct: 17 TMRHADALLTELEIPHETLIVSAHRTPDRLADYAR-TAAERGLNVIIAG 64


>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase
          (phosphoribosylaminoimidazole carboxylase, PurE)
          {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 23.3 bits (50), Expect = 8.7
 Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 1/47 (2%)

Query: 29 HVKECKELLSLMGIPYIEVSRSP-RLLPNFLGVLAPCEAEAQCAAMV 74
           +K+  E+L   GI Y     S  R            E       + 
Sbjct: 15 VMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIA 61


>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
          PlsX {Enterococcus faecalis [TaxId: 1351]}
          Length = 329

 Score = 23.4 bits (50), Expect = 9.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 6  FLLTGDAQEIDKFNRRLVRVSSVHVKE 32
          F L G   EI K+      ++ +H  E
Sbjct: 33 FQLYGKEAEIKKYITDEKNITIIHTDE 59


>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon
           Methanosarcina thermophila [TaxId: 2210]}
          Length = 201

 Score = 23.2 bits (50), Expect = 9.6
 Identities = 7/41 (17%), Positives = 10/41 (24%)

Query: 67  EAQCAAMVKAGKVYATATEDMDALTFGTNILLRQQLSWATF 107
           E     + K    Y+      DA+ F   I           
Sbjct: 106 EIFAYKVKKFIGEYSAVLNGADAVVFTAGIGENSASIRKRI 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 404,891
Number of extensions: 15870
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 17
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)