BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12072
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
+ ++ VS +GE+ AI+GP+GAGKS+LL +++GY
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+V+ + GE +I+GPSG+GKS++LN+I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+V+ + GE +I+GPSG+GKS++LN+I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 16 PSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
P A+++ + VS + R GE+ +LGPSG+GK+++L +I+G
Sbjct: 25 PGGARSV-RGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T L +++ + + GE A+LGPSG+GKS+LL I+G
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
L VS G+++ I+GP+G+GKS+L+NVI+G+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
L VS G+++ I+GP+G+GKS+L+NVI+G+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+TILK V+ GE+ A++GP+GAGKS+L +++G
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
L VS G+++ I+GP+G+GKS+L+NVI+G+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T L +SG RAGE+ ++GP+GAGKS+LL ++G
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+V+ + GE +I GPSG+GKS+ LN+I
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII 51
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T L +SG RAGE+ ++GP+GAGKS+LL ++G
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
K ILK +S GE+ ++GP+GAGK++ L +IS
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
K IL+ +S GE+ AI+GP+G+GKS+L ++G
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T L +SG RAGE+ ++GP+GAGKS+LL +G
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG 48
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T L +SG RAGE+ ++GP+GAGKS+LL +G
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG 48
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
K IL+ +S GE+ AI+GP+G+GKS+L ++G
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
KTILK +S + G+ + G +GAGK++LLN+++ Y
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK V+ F G++ ++G +G+GK++LL +++G
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG 59
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
F P +K + ++ + A++GP+GAGKS+L+NV++G
Sbjct: 673 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 715
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
AK +L R + I GP+G GKS+L I+
Sbjct: 441 AKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA 476
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
F P +K + ++ + A++GP+GAGKS+L+NV++G
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
AK +L R + I GP+G GKS+L I+
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA 482
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
F P +K + ++ + A++GP+GAGKS+L+NV++G
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
AK +L R + I GP+G GKS+L+ I+
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA 482
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
+LK ++ R GE+ ++GPSG+GKS+ L ++
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 50
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
L ++S + +GE ILGP+GAGK+ L +I+G+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 1 MSLQTHVTMVTFFN-EPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
MSL+ ++ V N S LK ++ + GE++AILG +G GKS+L +G
Sbjct: 1 MSLEDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
+LK ++ R GE+ ++GPSG+GKS+ L ++
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport
Atp- Binding Protein
Length = 375
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T +K +S + GE +LGPSG GK++ L I+G
Sbjct: 20 TAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG 54
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
L +V+ GE ILGPSGAGK++ + +I+G
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
L +V+ GE ILGPSGAGK++ + +I+G
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 5 THVTM--VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T V M VT F E +LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 17 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 68
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 5 THVTM--VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T V M VT F E +LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 5 THVTM--VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T V M VT F E +LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T ++ +S + GE +LGPSG GK++ L +I+G
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSL 49
V+F P +L+ ++ R GE++A++GP+G+GKS++
Sbjct: 20 VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 27/37 (72%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
K +LK ++ + G+ A++GP+G+GK++++N++ +
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK+++ GE+ AI G +G+GK+SLL +I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 32.3 bits (72), Expect = 0.078, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK+++ GE+ AI G +G+GK+SLL +I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 32.3 bits (72), Expect = 0.078, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK+++ GE+ AI G +G+GK+SLL +I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 13 FNEPS-PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F PS P IL+ ++ R AG+ A++G SG GKS++++++ Y
Sbjct: 423 FTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
V F P ILK +S G+ A++GPSG GKS+++ ++ +
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
LK+V F++G ++ + GP+GAGKSSL IS
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 32.0 bits (71), Expect = 0.091, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+ K ++ GE +GPSG GKS+LL +I+G
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.0 bits (71), Expect = 0.093, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
LK+V F++G ++ + GP+GAGKSSL IS
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 32.0 bits (71), Expect = 0.094, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
LK+V F++G ++ + GP+GAGKSSL IS
Sbjct: 31 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 61
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 32.0 bits (71), Expect = 0.095, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+ K ++ GE +GPSG GKS+LL +I+G
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+ K ++ GE +GPSG GKS+LL +I+G
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
ILK ++ GE A +G SG GKS+L+N+I
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 26 VSGRFRAGELSAILGPSGAGKSSLLNVISG 55
VS + GE A+LGPSG GK++ L +++G
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 28 GRFRAGELSAILGPSGAGKSSLLNVISG 55
G R GE+ I+GP+G GK++ + +++G
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG 390
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 28 GRFRAGELSAILGPSGAGKSSLLNVISG 55
G R GE+ I+GP+G GK++ + +++G
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 12 FFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+F P +L V+ + G L A+LG +G+GKS+L+N+I
Sbjct: 351 YFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex
(Aq_297) From Aquifex Aeolicus Vf5
Length = 224
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
ILK +S + GE +I+G SG+GKS+LL ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK+++ GE+ AI G +G+GK+SLL +I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+LK+++ GE+ AI G +G+GK+SLL +I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+ L+ VS G+ A++GPSGAGKS++L ++
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 13 FNEPSPAKT----ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
F+ PS KT +L G F E+ ++G +G GK++L+ +++G
Sbjct: 354 FSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T + ++ + GE +LGPSG GK++ L +I+G
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T + ++ + GE +LGPSG GK++ L +I+G
Sbjct: 26 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 60
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 33 GELSAILGPSGAGKSSLLNVISG 55
GE ILGP+G+GK++LL ISG
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISG 52
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 11 TFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
+F N P +L +S GE+ I+G SG GK++LL ++G+
Sbjct: 13 SFQNTP-----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 30.4 bits (67), Expect = 0.30, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
F++ + L +VS AG++ ++G SGAGKS+L+ ++
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
F++ + L +VS AG++ ++G SGAGKS+L+ ++
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
F++ + L +VS AG++ ++G SGAGKS+L+ ++
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 52
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 27 SGRFRAGELSAILGPSGAGKSSLLNVISG 55
+G + GE+ ILGP+G GK++ ++ G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVG 316
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+VS + G A+ G SG+GKS+L+N +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+VS + G A+ G SG+GKS+L+N +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 28 GRFRAGELSAILGPSGAGKSSLLNVISG 55
G + GE+ I+GP+G GK++ + ++G
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG 334
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 31 RAGELSAILGPSGAGKSSLLNVISG 55
+ G + I+GP+G GKS+ + +++G
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAG 69
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 30 FRAGELSAILGPSGAGKSSLLNVIS 54
+ G++S + G SG GKSSLLN I+
Sbjct: 166 YLKGKISTMAGLSGVGKSSLLNAIN 190
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+VS + G A+ G SG+GKS+L+N +
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F + IL +++ + GE+ I+G SG+GKS+L +I +
Sbjct: 11 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 54
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F + IL +++ + GE+ I+G SG+GKS+L +I +
Sbjct: 9 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
>pdb|3S99|A Chain A, Crystal Structure Of A Basic Membrane Lipoprotein From
Brucella Melitensis, Iodide Soak
Length = 356
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 7 VTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGP 41
V M F N P K + + R ++GEL+ GP
Sbjct: 285 VKMAPFTNMPDDVKKLAEETEARIKSGELNPFTGP 319
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F + IL +++ + GE+ I+G SG+GKS+L +I +
Sbjct: 15 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F + IL +++ + GE+ I+G SG+GKS+L +I +
Sbjct: 15 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
V F P I + S +G ++A++GPSG+GKS++L+++
Sbjct: 378 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 421
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
Length = 241
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F + IL +++ + GE+ I+G SG+GKS+L +I +
Sbjct: 9 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F + IL +++ + GE+ I+G SG+GKS+L +I +
Sbjct: 15 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
V F P I + S +G ++A++GPSG+GKS++L+++
Sbjct: 347 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 33 GELSAILGPSGAGKSSLLNVISG 55
G +S G SG GKSSLLN + G
Sbjct: 215 GRISIFAGQSGVGKSSLLNALLG 237
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 33 GELSAILGPSGAGKSSLLNVISG 55
G +S G SG GKSSLLN + G
Sbjct: 160 GRISIFAGQSGVGKSSLLNALLG 182
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 33 GELSAILGPSGAGKSSLLNVISG 55
G +S G SG GKSSLLN + G
Sbjct: 207 GRISIFAGQSGVGKSSLLNALLG 229
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
K +L+ ++ G + GP+G GK++LL IS Y
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
L+ + F G L+++ G SG+GKS+L+N I
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
Length = 240
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 38 ILGPSGAGKSSLLNVISG 55
+LGP+GAGKS L +I+G
Sbjct: 29 LLGPTGAGKSVFLELIAG 46
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F + IL +++ + GE+ I+G +G+GKS+L +I +
Sbjct: 11 FRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRF 54
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 30 FRAGELSAILGPSGAGKSSLLNVIS 54
F ++I+GP+G+GKS++++ IS
Sbjct: 23 FGESNFTSIIGPNGSGKSNMMDAIS 47
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter
Length = 253
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 33 GELSAILGPSGAGKSSLLNVISG 55
G++ A+LG +G GKS+LL+++ G
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLG 53
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSL 49
V+F P +L+ ++ G+++A++GP+G+GKS++
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSL 49
V+F P +L+ ++ G+++A++GP+G+GKS++
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSL 49
V+F P +L+ ++ G+++A++GP+G+GKS++
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLN 51
IL+++S G+ +LG +G+GKS+LL+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLS 65
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
++ IL+ +S + + A GPSG GKS++ +++ +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F P L++++ + AG+ A++G SG+GKS++ ++I+ +
Sbjct: 349 FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 13 FNEPSPAKT-ILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
F+ PS + ILK ++ + ++G+ A++G SG GKS+ + ++
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 13 FNEPSPAKT-ILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
F+ PS + ILK ++ + ++G+ A++G SG GKS+ + ++
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 33 GELSAILGPSGAGKSSLLNVISG 55
G + + GPSG GKSS+L+ ++G
Sbjct: 165 GFICILAGPSGVGKSSILSRLTG 187
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
F P L++++ + AG+ A++G SG+GKS++ ++I+ +
Sbjct: 349 FTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
K+ + +S F G ++A++GP+G+GKS++ + I
Sbjct: 12 KSFAERISVDFVKG-VTAVVGPNGSGKSNITDAI 44
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
VT N S + T+++ F+ G ++ I+G +G+GKSSLL+ I
Sbjct: 6 VTVKNFRSHSDTVVE-----FKEG-INLIIGQNGSGKSSLLDAI 43
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
VT N S + T+++ F+ G ++ I+G +G+GKSSLL+ I
Sbjct: 6 VTVKNFRSHSDTVVE-----FKEG-INLIIGQNGSGKSSLLDAI 43
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 40 GPSGAGKSSLLNVIS 54
G SG GKSSLLN IS
Sbjct: 180 GQSGVGKSSLLNAIS 194
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
VT N S + T+++ F+ G ++ I+G +G+GKSSLL+ I
Sbjct: 6 VTVKNFRSHSDTVVE-----FKEG-INLIIGQNGSGKSSLLDAI 43
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified
Dna
Length = 916
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSL 49
LK+++ R L I G SG+GKSSL
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSL 40
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
VT N S + T+++ F+ G ++ I+G +G+GKSSLL+ I
Sbjct: 6 VTVKNFRSHSDTVVE-----FKEG-INLIIGQNGSGKSSLLDAI 43
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 18/19 (94%)
Query: 35 LSAILGPSGAGKSSLLNVI 53
++AI+GP+G+GKS++++ I
Sbjct: 26 VTAIVGPNGSGKSNIIDAI 44
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+K + + G++ ++G +GAGK++ L+ I+G
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
VT N S + T+++ F+ G ++ I+G +G+GKSSLL+ I
Sbjct: 6 VTVKNFRSHSDTVVE-----FKEG-INLIIGQNGSGKSSLLDAI 43
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
VT N S + T+++ F+ G ++ I+G +G+GKSSLL+ I
Sbjct: 6 VTVKNFRSHSDTVVE-----FKEG-INLIIGQNGSGKSSLLDAI 43
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLN 51
L ++ RF G ++++ G SG+GKS+L++
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 30 FRAGELSAILGPSGAGKSSLLNVISG 55
R G I G AGKSSLLN ++G
Sbjct: 4 LREGMKVVIAGRPNAGKSSLLNALAG 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,461,107
Number of Sequences: 62578
Number of extensions: 37896
Number of successful extensions: 402
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 133
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)