Query psy12072
Match_columns 76
No_of_seqs 128 out of 1298
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:56:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 99.8 1.6E-20 3.5E-25 132.1 9.2 66 2-73 2-67 (258)
2 COG3842 PotA ABC-type spermidi 99.8 5.6E-20 1.2E-24 133.9 9.5 55 18-73 16-70 (352)
3 COG1116 TauB ABC-type nitrate/ 99.8 1.2E-19 2.6E-24 127.1 8.5 54 19-73 15-68 (248)
4 cd03296 ABC_CysA_sulfate_impor 99.8 3.4E-19 7.4E-24 121.4 10.3 67 1-73 1-67 (239)
5 COG3839 MalK ABC-type sugar tr 99.8 1.4E-19 3.1E-24 131.2 8.8 66 3-74 4-69 (338)
6 COG1126 GlnQ ABC-type polar am 99.8 1.5E-19 3.2E-24 125.5 8.2 65 3-73 3-67 (240)
7 COG1136 SalX ABC-type antimicr 99.8 3.3E-19 7.1E-24 123.6 9.4 68 4-73 3-70 (226)
8 PRK13646 cbiO cobalt transport 99.8 6.7E-19 1.5E-23 123.5 9.9 72 1-73 1-72 (286)
9 cd03261 ABC_Org_Solvent_Resist 99.8 9.7E-19 2.1E-23 118.8 10.2 64 4-73 2-65 (235)
10 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 8.9E-19 1.9E-23 117.5 9.5 53 20-73 17-69 (218)
11 TIGR00960 3a0501s02 Type II (G 99.8 1.2E-18 2.6E-23 116.9 10.1 67 3-73 2-68 (216)
12 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 6.9E-19 1.5E-23 123.7 9.2 53 21-74 18-70 (254)
13 TIGR03522 GldA_ABC_ATP gliding 99.8 1.3E-18 2.7E-23 122.9 10.5 67 1-73 1-67 (301)
14 PRK11124 artP arginine transpo 99.8 1.3E-18 2.8E-23 118.6 10.0 66 1-72 1-66 (242)
15 PRK13649 cbiO cobalt transport 99.8 9.8E-19 2.1E-23 121.8 9.6 72 1-73 1-72 (280)
16 cd03259 ABC_Carb_Solutes_like 99.8 1.2E-18 2.5E-23 116.8 9.4 64 4-73 2-65 (213)
17 cd03263 ABC_subfamily_A The AB 99.8 1.3E-18 2.9E-23 116.8 9.5 66 4-73 2-67 (220)
18 PRK13637 cbiO cobalt transport 99.8 1.3E-18 2.8E-23 122.2 9.7 72 1-73 1-72 (287)
19 PRK13641 cbiO cobalt transport 99.8 1.3E-18 2.9E-23 122.0 9.7 72 1-73 1-72 (287)
20 cd03265 ABC_DrrA DrrA is the A 99.8 1.8E-18 3.9E-23 116.5 9.8 64 4-73 2-65 (220)
21 cd03216 ABC_Carb_Monos_I This 99.8 3E-18 6.5E-23 111.8 10.4 64 4-73 2-65 (163)
22 cd03301 ABC_MalK_N The N-termi 99.8 2E-18 4.4E-23 115.4 9.8 53 20-73 13-65 (213)
23 cd03224 ABC_TM1139_LivF_branch 99.8 1.8E-18 3.9E-23 116.1 9.6 53 20-73 13-65 (222)
24 cd03269 ABC_putative_ATPase Th 99.8 1.9E-18 4.2E-23 115.5 9.5 64 4-73 2-65 (210)
25 PRK13634 cbiO cobalt transport 99.8 1.8E-18 3.9E-23 121.6 9.8 72 1-73 1-72 (290)
26 COG0410 LivF ABC-type branched 99.8 1.3E-18 2.8E-23 121.0 8.9 58 16-74 12-69 (237)
27 TIGR02211 LolD_lipo_ex lipopro 99.8 2.5E-18 5.4E-23 115.5 9.8 68 4-73 3-70 (221)
28 cd03219 ABC_Mj1267_LivG_branch 99.8 2E-18 4.3E-23 116.9 9.3 53 20-73 13-65 (236)
29 cd03218 ABC_YhbG The ABC trans 99.8 2.2E-18 4.8E-23 116.5 9.4 64 4-73 2-65 (232)
30 cd03262 ABC_HisP_GlnQ_permease 99.8 2.6E-18 5.6E-23 114.7 9.6 53 20-73 13-65 (213)
31 PRK14250 phosphate ABC transpo 99.8 2.9E-18 6.2E-23 117.3 10.1 66 2-73 3-68 (241)
32 PRK10851 sulfate/thiosulfate t 99.8 3E-18 6.5E-23 124.1 10.7 67 1-73 1-67 (353)
33 cd03233 ABC_PDR_domain1 The pl 99.8 2.3E-18 5E-23 115.4 9.3 69 4-73 5-75 (202)
34 PRK11629 lolD lipoprotein tran 99.8 4.1E-18 8.9E-23 115.7 10.7 53 20-73 22-74 (233)
35 TIGR02673 FtsE cell division A 99.8 2.5E-18 5.3E-23 115.1 9.4 66 3-73 2-67 (214)
36 PRK13540 cytochrome c biogenes 99.8 2.8E-18 6.1E-23 114.4 9.7 65 3-73 2-66 (200)
37 cd03293 ABC_NrtD_SsuB_transpor 99.8 3E-18 6.6E-23 115.4 9.8 53 20-73 17-69 (220)
38 TIGR03410 urea_trans_UrtE urea 99.8 3E-18 6.6E-23 115.8 9.9 53 20-73 13-65 (230)
39 TIGR02314 ABC_MetN D-methionin 99.8 2.9E-18 6.3E-23 124.0 10.3 69 3-73 2-70 (343)
40 PRK13538 cytochrome c biogenes 99.8 3.8E-18 8.1E-23 114.1 10.1 64 4-73 3-66 (204)
41 TIGR01978 sufC FeS assembly AT 99.8 2.9E-18 6.2E-23 116.4 9.6 65 4-73 2-67 (243)
42 cd03257 ABC_NikE_OppD_transpor 99.8 2.7E-18 5.8E-23 115.5 9.3 53 20-73 18-70 (228)
43 cd03268 ABC_BcrA_bacitracin_re 99.8 3.1E-18 6.6E-23 114.4 9.5 64 4-73 2-65 (208)
44 cd03256 ABC_PhnC_transporter A 99.8 2.6E-18 5.7E-23 116.5 9.2 53 20-73 14-66 (241)
45 PRK13537 nodulation ABC transp 99.8 3.3E-18 7.2E-23 121.4 10.1 55 19-74 19-73 (306)
46 PRK11248 tauB taurine transpor 99.8 4E-18 8.7E-23 117.9 10.3 65 3-73 2-66 (255)
47 cd03292 ABC_FtsE_transporter F 99.8 3.7E-18 7.9E-23 114.1 9.7 53 20-73 14-66 (214)
48 cd03229 ABC_Class3 This class 99.8 5.2E-18 1.1E-22 111.6 10.2 64 4-73 2-65 (178)
49 COG0411 LivG ABC-type branched 99.8 3.2E-19 7E-24 124.8 4.7 64 5-74 7-70 (250)
50 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 4.5E-18 9.8E-23 115.7 10.1 54 19-73 13-66 (236)
51 PRK13539 cytochrome c biogenes 99.8 5.2E-18 1.1E-22 113.8 10.2 66 1-72 1-66 (207)
52 COG3638 ABC-type phosphate/pho 99.8 2.5E-18 5.5E-23 120.4 9.0 68 2-74 3-70 (258)
53 TIGR01189 ccmA heme ABC export 99.8 5.1E-18 1.1E-22 112.9 10.1 54 19-73 12-65 (198)
54 cd03266 ABC_NatA_sodium_export 99.8 3.4E-18 7.5E-23 114.6 9.3 69 3-73 2-70 (218)
55 cd03260 ABC_PstB_phosphate_tra 99.8 2.9E-18 6.3E-23 115.8 8.9 54 20-73 13-70 (227)
56 TIGR01288 nodI ATP-binding ABC 99.8 4E-18 8.7E-23 120.4 9.9 65 3-73 5-69 (303)
57 TIGR02315 ABC_phnC phosphonate 99.8 2.2E-18 4.7E-23 117.2 8.2 54 19-73 14-67 (243)
58 PRK10908 cell division protein 99.8 4.8E-18 1E-22 114.5 9.8 66 3-73 2-67 (222)
59 cd03225 ABC_cobalt_CbiO_domain 99.8 3.2E-18 6.9E-23 114.3 8.9 53 20-73 14-66 (211)
60 COG1131 CcmA ABC-type multidru 99.8 3E-18 6.4E-23 121.4 9.2 55 19-74 17-71 (293)
61 PRK10584 putative ABC transpor 99.8 4.8E-18 1E-22 114.8 9.8 53 20-73 23-75 (228)
62 PRK13536 nodulation factor exp 99.8 3.6E-18 7.8E-23 123.2 9.6 55 18-73 52-106 (340)
63 PRK11231 fecE iron-dicitrate t 99.8 5E-18 1.1E-22 116.7 9.9 67 1-73 1-67 (255)
64 COG1135 AbcC ABC-type metal io 99.8 3.4E-18 7.4E-23 123.3 9.3 70 3-73 2-71 (339)
65 PRK10895 lipopolysaccharide AB 99.8 5.2E-18 1.1E-22 115.5 9.7 54 19-73 15-68 (241)
66 PRK09493 glnQ glutamine ABC tr 99.8 6.2E-18 1.3E-22 115.1 10.1 65 3-73 2-66 (240)
67 cd03230 ABC_DR_subfamily_A Thi 99.8 7.7E-18 1.7E-22 110.3 10.1 64 4-73 2-65 (173)
68 PRK11650 ugpC glycerol-3-phosp 99.8 5.3E-18 1.2E-22 122.9 10.2 66 3-73 4-69 (356)
69 TIGR01166 cbiO cobalt transpor 99.8 2.1E-18 4.6E-23 113.9 7.4 54 19-73 4-57 (190)
70 cd03226 ABC_cobalt_CbiO_domain 99.8 3.4E-18 7.4E-23 114.1 8.5 53 20-73 13-65 (205)
71 PRK11831 putative ABC transpor 99.8 6E-18 1.3E-22 117.5 10.0 54 19-73 19-72 (269)
72 PRK11300 livG leucine/isoleuci 99.8 6.8E-18 1.5E-22 115.6 10.0 54 19-73 17-70 (255)
73 PRK11264 putative amino-acid A 99.8 5.4E-18 1.2E-22 115.8 9.5 65 3-73 4-68 (250)
74 cd03295 ABC_OpuCA_Osmoprotecti 99.8 6.6E-18 1.4E-22 115.3 9.9 53 20-73 14-66 (242)
75 cd03235 ABC_Metallic_Cations A 99.8 2.6E-18 5.7E-23 115.0 7.8 52 20-72 12-63 (213)
76 PRK13651 cobalt transporter AT 99.8 4.9E-18 1.1E-22 120.7 9.5 71 1-72 1-71 (305)
77 PRK13643 cbiO cobalt transport 99.8 5.6E-18 1.2E-22 119.0 9.6 70 3-73 2-71 (288)
78 PRK11153 metN DL-methionine tr 99.8 7E-18 1.5E-22 121.4 10.3 69 3-73 2-70 (343)
79 PRK14235 phosphate transporter 99.8 7.7E-18 1.7E-22 116.9 10.1 55 19-73 31-89 (267)
80 PRK11000 maltose/maltodextrin 99.8 8.5E-18 1.8E-22 122.1 10.6 65 3-73 4-68 (369)
81 PRK14269 phosphate ABC transpo 99.8 8.2E-18 1.8E-22 115.2 10.0 68 1-73 1-70 (246)
82 PRK10253 iron-enterobactin tra 99.8 4.7E-18 1E-22 117.7 8.9 54 19-73 19-72 (265)
83 COG1124 DppF ABC-type dipeptid 99.8 2.9E-18 6.4E-23 120.1 7.8 71 2-74 3-73 (252)
84 PRK13650 cbiO cobalt transport 99.8 1.1E-17 2.5E-22 116.9 10.8 53 20-73 20-72 (279)
85 PRK11614 livF leucine/isoleuci 99.8 6.7E-18 1.4E-22 114.8 9.3 54 19-73 17-70 (237)
86 PRK13635 cbiO cobalt transport 99.8 9.1E-18 2E-22 117.5 10.2 67 3-73 6-72 (279)
87 PRK14267 phosphate ABC transpo 99.8 8.3E-18 1.8E-22 115.2 9.7 54 20-73 17-74 (253)
88 cd03258 ABC_MetN_methionine_tr 99.8 4.1E-18 8.9E-23 115.4 8.1 69 3-73 2-70 (233)
89 PRK14241 phosphate transporter 99.8 9E-18 2E-22 115.6 9.9 65 3-72 5-73 (258)
90 PRK15093 antimicrobial peptide 99.8 1.1E-17 2.3E-22 119.8 10.6 70 3-73 4-76 (330)
91 PRK10247 putative ABC transpor 99.8 5.9E-18 1.3E-22 114.7 8.7 54 19-73 19-72 (225)
92 cd03247 ABCC_cytochrome_bd The 99.8 1E-17 2.2E-22 110.1 9.5 66 4-73 2-67 (178)
93 TIGR03005 ectoine_ehuA ectoine 99.8 1E-17 2.2E-22 114.9 9.9 53 20-73 13-65 (252)
94 TIGR03265 PhnT2 putative 2-ami 99.8 1.1E-17 2.3E-22 121.2 10.5 65 3-73 5-69 (353)
95 cd03214 ABC_Iron-Siderophores_ 99.8 1.3E-17 2.7E-22 109.9 9.9 53 20-73 12-64 (180)
96 PRK15112 antimicrobial peptide 99.8 8E-18 1.7E-22 116.8 9.4 70 3-73 5-78 (267)
97 PRK13645 cbiO cobalt transport 99.8 9.5E-18 2.1E-22 117.5 9.9 52 20-72 24-75 (289)
98 PRK10575 iron-hydroxamate tran 99.8 9.6E-18 2.1E-22 116.2 9.8 54 19-73 23-76 (265)
99 TIGR03873 F420-0_ABC_ATP propo 99.8 1.1E-17 2.4E-22 115.1 10.1 64 4-73 3-66 (256)
100 cd03244 ABCC_MRP_domain2 Domai 99.8 6.7E-18 1.5E-22 113.4 8.7 67 3-73 3-69 (221)
101 cd03254 ABCC_Glucan_exporter_l 99.8 5.8E-18 1.3E-22 114.3 8.5 66 3-73 3-68 (229)
102 cd03245 ABCC_bacteriocin_expor 99.8 7.3E-18 1.6E-22 113.2 8.9 67 3-73 3-69 (220)
103 TIGR03608 L_ocin_972_ABC putat 99.8 7.3E-18 1.6E-22 112.1 8.8 53 19-72 10-62 (206)
104 cd03231 ABC_CcmA_heme_exporter 99.8 1.1E-17 2.3E-22 111.8 9.6 64 4-73 2-65 (201)
105 TIGR01188 drrA daunorubicin re 99.8 4.1E-18 8.9E-23 120.2 8.0 54 19-73 5-58 (302)
106 TIGR02769 nickel_nikE nickel i 99.8 1.1E-17 2.4E-22 115.8 10.0 70 3-73 3-76 (265)
107 PRK15056 manganese/iron transp 99.8 1.1E-17 2.3E-22 116.4 9.9 54 19-73 19-72 (272)
108 TIGR00972 3a0107s01c2 phosphat 99.7 1.1E-17 2.4E-22 114.4 9.8 64 4-73 3-71 (247)
109 PRK13548 hmuV hemin importer A 99.7 9.1E-18 2E-22 116.1 9.3 54 19-73 14-67 (258)
110 cd03252 ABCC_Hemolysin The ABC 99.7 8.3E-18 1.8E-22 114.1 9.0 53 20-73 15-67 (237)
111 TIGR03411 urea_trans_UrtD urea 99.7 1.1E-17 2.3E-22 113.9 9.4 53 20-73 15-67 (242)
112 PRK13647 cbiO cobalt transport 99.7 1.4E-17 3E-22 116.2 10.1 66 3-73 5-70 (274)
113 cd03228 ABCC_MRP_Like The MRP 99.7 9.8E-18 2.1E-22 109.6 8.8 53 20-73 15-67 (171)
114 cd03251 ABCC_MsbA MsbA is an e 99.7 1.2E-17 2.5E-22 113.1 9.4 66 4-73 2-67 (234)
115 PRK13631 cbiO cobalt transport 99.7 1.1E-17 2.5E-22 119.6 9.8 70 3-73 22-91 (320)
116 TIGR03740 galliderm_ABC gallid 99.7 1.7E-17 3.7E-22 111.9 10.2 53 20-73 13-65 (223)
117 PRK14259 phosphate ABC transpo 99.7 1.3E-17 2.8E-22 116.0 9.8 55 19-73 25-83 (269)
118 cd03215 ABC_Carb_Monos_II This 99.7 1.1E-17 2.3E-22 110.4 8.8 51 22-73 15-65 (182)
119 COG1125 OpuBA ABC-type proline 99.7 5.9E-18 1.3E-22 120.2 8.0 65 4-74 3-67 (309)
120 PRK11247 ssuB aliphatic sulfon 99.7 1.3E-17 2.9E-22 115.9 9.7 64 3-72 13-76 (257)
121 PRK14247 phosphate ABC transpo 99.7 8.6E-18 1.9E-22 115.0 8.6 66 3-73 4-73 (250)
122 cd03264 ABC_drug_resistance_li 99.7 1.1E-17 2.4E-22 111.8 9.0 63 4-73 2-64 (211)
123 PRK11701 phnK phosphonate C-P 99.7 1.3E-17 2.7E-22 114.9 9.4 51 20-71 19-69 (258)
124 TIGR02982 heterocyst_DevA ABC 99.7 1.6E-17 3.5E-22 112.0 9.8 68 4-73 3-70 (220)
125 PRK13638 cbiO cobalt transport 99.7 6.4E-18 1.4E-22 117.4 8.0 65 3-73 2-66 (271)
126 PRK13648 cbiO cobalt transport 99.7 9.7E-18 2.1E-22 116.3 8.9 53 20-73 22-74 (269)
127 PRK13644 cbiO cobalt transport 99.7 1.3E-17 2.9E-22 116.3 9.6 66 3-73 2-67 (274)
128 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.2E-17 2.5E-22 113.5 9.1 53 20-73 16-68 (238)
129 PRK14237 phosphate transporter 99.7 1.6E-17 3.5E-22 115.3 9.9 55 19-73 32-90 (267)
130 PRK11432 fbpC ferric transport 99.7 1E-17 2.2E-22 121.3 9.1 54 19-73 18-71 (351)
131 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.3E-17 2.8E-22 113.3 9.1 54 18-72 33-86 (224)
132 cd03232 ABC_PDR_domain2 The pl 99.7 2E-17 4.4E-22 110.0 9.8 69 3-72 4-73 (192)
133 cd03246 ABCC_Protease_Secretio 99.7 1.5E-17 3.3E-22 108.9 9.0 53 20-73 15-67 (173)
134 PRK11022 dppD dipeptide transp 99.7 1.6E-17 3.5E-22 119.0 9.9 70 3-73 4-76 (326)
135 PRK10619 histidine/lysine/argi 99.7 2.1E-17 4.5E-22 113.8 10.1 65 3-73 6-70 (257)
136 PRK09536 btuD corrinoid ABC tr 99.7 1.7E-17 3.6E-22 122.3 10.2 65 3-73 4-68 (402)
137 PRK13652 cbiO cobalt transport 99.7 1.3E-17 2.7E-22 116.5 9.0 53 20-73 17-69 (277)
138 PRK13639 cbiO cobalt transport 99.7 1.9E-17 4.2E-22 115.4 9.9 66 3-73 2-67 (275)
139 cd03253 ABCC_ATM1_transporter 99.7 1.5E-17 3.2E-22 112.7 9.0 53 20-73 14-66 (236)
140 COG1127 Ttg2A ABC-type transpo 99.7 9.7E-18 2.1E-22 117.7 8.3 57 16-73 17-73 (263)
141 PRK14242 phosphate transporter 99.7 1.9E-17 4.1E-22 113.4 9.5 66 3-73 7-76 (253)
142 PRK14253 phosphate ABC transpo 99.7 1.6E-17 3.4E-22 113.7 9.0 67 2-73 3-73 (249)
143 PRK13547 hmuV hemin importer A 99.7 2.2E-17 4.7E-22 115.6 9.9 65 3-73 2-74 (272)
144 PRK14262 phosphate ABC transpo 99.7 1.3E-17 2.9E-22 114.0 8.7 55 19-73 15-73 (250)
145 PRK13543 cytochrome c biogenes 99.7 1.7E-17 3.7E-22 111.8 9.1 54 19-73 23-76 (214)
146 PRK14268 phosphate ABC transpo 99.7 1.8E-17 4E-22 114.2 9.4 55 19-73 24-82 (258)
147 TIGR02323 CP_lyasePhnK phospho 99.7 1.6E-17 3.4E-22 113.8 8.9 63 3-71 4-66 (253)
148 PRK09580 sufC cysteine desulfu 99.7 1.7E-17 3.6E-22 113.1 8.9 66 3-73 2-68 (248)
149 PRK14251 phosphate ABC transpo 99.7 2.6E-17 5.6E-22 112.7 9.9 55 19-73 16-74 (251)
150 cd03217 ABC_FeS_Assembly ABC-t 99.7 2.5E-17 5.5E-22 110.1 9.6 65 4-73 2-67 (200)
151 PRK13632 cbiO cobalt transport 99.7 2E-17 4.4E-22 115.0 9.5 54 19-73 21-74 (271)
152 PRK15079 oligopeptide ABC tran 99.7 2.4E-17 5.2E-22 118.4 10.1 70 3-73 9-86 (331)
153 PRK13642 cbiO cobalt transport 99.7 3.5E-17 7.7E-22 114.2 10.6 68 3-73 5-72 (277)
154 PRK13636 cbiO cobalt transport 99.7 2.4E-17 5.1E-22 115.5 9.7 65 3-72 6-70 (283)
155 PRK09452 potA putrescine/sperm 99.7 1.8E-17 3.9E-22 121.0 9.3 54 19-73 26-79 (375)
156 PRK11308 dppF dipeptide transp 99.7 3.2E-17 7E-22 117.5 10.4 70 3-73 6-80 (327)
157 PRK10418 nikD nickel transport 99.7 2E-17 4.3E-22 113.9 8.9 64 3-73 5-72 (254)
158 cd03250 ABCC_MRP_domain1 Domai 99.7 2E-17 4.3E-22 110.3 8.7 49 20-69 18-66 (204)
159 cd03267 ABC_NatA_like Similar 99.7 1.4E-17 3.1E-22 113.7 8.1 54 18-72 32-85 (236)
160 PRK10744 pstB phosphate transp 99.7 1.8E-17 3.9E-22 114.4 8.7 55 19-73 25-83 (260)
161 PRK14271 phosphate ABC transpo 99.7 3.4E-17 7.5E-22 114.5 10.1 55 19-73 33-91 (276)
162 COG1118 CysA ABC-type sulfate/ 99.7 5.3E-18 1.1E-22 122.4 6.1 64 1-70 1-64 (345)
163 PRK13541 cytochrome c biogenes 99.7 3.5E-17 7.6E-22 108.8 9.6 64 3-73 2-65 (195)
164 PRK14272 phosphate ABC transpo 99.7 4.1E-17 9E-22 111.6 10.1 55 19-73 16-74 (252)
165 PRK14256 phosphate ABC transpo 99.7 3.4E-17 7.5E-22 112.3 9.8 66 3-73 5-74 (252)
166 PRK09473 oppD oligopeptide tra 99.7 3.4E-17 7.5E-22 117.5 10.2 70 3-73 13-84 (330)
167 PRK09984 phosphonate/organopho 99.7 3.4E-17 7.3E-22 113.0 9.7 55 19-73 16-72 (262)
168 COG4152 ABC-type uncharacteriz 99.7 6.5E-18 1.4E-22 119.5 6.2 68 1-74 1-68 (300)
169 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 4.5E-17 9.8E-22 104.6 9.7 50 20-70 13-62 (144)
170 PRK13549 xylose transporter AT 99.7 2.6E-17 5.7E-22 122.5 9.8 66 3-73 6-72 (506)
171 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.6E-17 3.6E-22 115.5 8.1 55 18-73 35-89 (269)
172 TIGR02324 CP_lyasePhnL phospho 99.7 3.5E-17 7.7E-22 110.3 9.5 65 3-68 2-68 (224)
173 PRK14274 phosphate ABC transpo 99.7 3.6E-17 7.9E-22 112.7 9.7 55 19-73 24-82 (259)
174 PRK14270 phosphate ABC transpo 99.7 3.9E-17 8.6E-22 111.9 9.8 55 19-73 16-74 (251)
175 cd03248 ABCC_TAP TAP, the Tran 99.7 2.7E-17 5.8E-22 111.0 8.8 53 20-73 27-79 (226)
176 cd03300 ABC_PotA_N PotA is an 99.7 3.7E-17 8E-22 111.1 9.5 64 4-73 2-65 (232)
177 PRK13633 cobalt transporter AT 99.7 4.6E-17 9.9E-22 113.8 10.2 70 3-73 5-75 (280)
178 PRK14273 phosphate ABC transpo 99.7 2.1E-17 4.5E-22 113.5 8.4 54 20-73 20-77 (254)
179 cd03369 ABCC_NFT1 Domain 2 of 99.7 3.7E-17 8.1E-22 109.2 9.1 67 3-73 7-73 (207)
180 PRK14266 phosphate ABC transpo 99.7 4.9E-17 1.1E-21 111.2 9.9 66 3-73 4-73 (250)
181 PRK11607 potG putrescine trans 99.7 4.8E-17 1E-21 118.8 10.4 54 19-73 31-84 (377)
182 TIGR03258 PhnT 2-aminoethylpho 99.7 4.8E-17 1E-21 118.3 10.3 65 3-73 6-72 (362)
183 PRK10762 D-ribose transporter 99.7 3.7E-17 8.1E-22 121.6 9.9 54 19-73 16-69 (501)
184 PRK14248 phosphate ABC transpo 99.7 4.3E-17 9.4E-22 112.9 9.6 55 19-73 33-91 (268)
185 TIGR00968 3a0106s01 sulfate AB 99.7 6E-17 1.3E-21 110.5 10.1 53 20-73 13-65 (237)
186 cd03288 ABCC_SUR2 The SUR doma 99.7 4.5E-17 9.7E-22 112.4 9.6 53 20-73 34-86 (257)
187 PRK14254 phosphate ABC transpo 99.7 5.5E-17 1.2E-21 114.0 10.2 54 19-72 51-108 (285)
188 cd03213 ABCG_EPDR ABCG transpo 99.7 4.7E-17 1E-21 108.5 9.2 71 3-73 4-76 (194)
189 PF00005 ABC_tran: ABC transpo 99.7 1.7E-17 3.6E-22 103.8 6.7 51 23-74 1-51 (137)
190 PRK14236 phosphate transporter 99.7 3.8E-17 8.1E-22 113.7 9.1 55 19-73 37-95 (272)
191 PRK14243 phosphate transporter 99.7 4.5E-17 9.9E-22 112.9 9.3 54 19-72 22-79 (264)
192 PRK14238 phosphate transporter 99.7 4.9E-17 1.1E-21 113.2 9.5 53 20-72 37-93 (271)
193 PRK14240 phosphate transporter 99.7 3E-17 6.6E-22 112.3 8.3 66 3-73 4-73 (250)
194 PRK14261 phosphate ABC transpo 99.7 4.3E-17 9.2E-22 111.9 9.0 55 19-73 18-76 (253)
195 PRK09700 D-allose transporter 99.7 3.6E-17 7.7E-22 121.8 9.2 54 19-73 17-70 (510)
196 PRK14239 phosphate transporter 99.7 7.2E-17 1.6E-21 110.4 9.9 54 19-72 17-74 (252)
197 PRK15439 autoinducer 2 ABC tra 99.7 6E-17 1.3E-21 121.0 10.3 54 19-73 23-76 (510)
198 PRK10419 nikE nickel transport 99.7 6.3E-17 1.4E-21 112.5 9.6 54 19-73 24-77 (268)
199 PRK14263 phosphate ABC transpo 99.7 7.8E-17 1.7E-21 111.8 10.0 56 18-73 19-78 (261)
200 TIGR02633 xylG D-xylose ABC tr 99.7 6E-17 1.3E-21 120.2 10.0 66 3-73 2-68 (500)
201 CHL00131 ycf16 sulfate ABC tra 99.7 5.3E-17 1.2E-21 111.0 9.0 55 19-73 19-74 (252)
202 PRK13640 cbiO cobalt transport 99.7 6.9E-17 1.5E-21 113.1 9.7 53 20-73 20-75 (282)
203 cd03290 ABCC_SUR1_N The SUR do 99.7 5.2E-17 1.1E-21 109.2 8.7 52 20-72 14-65 (218)
204 cd03223 ABCD_peroxisomal_ALDP 99.7 5.8E-17 1.3E-21 106.0 8.6 49 20-69 14-62 (166)
205 TIGR01186 proV glycine betaine 99.7 3.3E-17 7.2E-22 119.4 8.2 55 18-73 4-58 (363)
206 TIGR02868 CydC thiol reductant 99.7 3.8E-17 8.2E-22 121.7 8.6 53 20-73 348-400 (529)
207 PRK14255 phosphate ABC transpo 99.7 8.7E-17 1.9E-21 110.1 9.7 54 19-72 17-74 (252)
208 PRK09544 znuC high-affinity zi 99.7 7E-17 1.5E-21 111.7 9.3 50 19-69 16-65 (251)
209 cd03234 ABCG_White The White s 99.7 4.4E-17 9.6E-22 110.2 8.0 55 19-73 19-75 (226)
210 PRK14275 phosphate ABC transpo 99.7 9.4E-17 2E-21 112.7 9.9 55 19-73 51-109 (286)
211 PRK14260 phosphate ABC transpo 99.7 9.1E-17 2E-21 110.8 9.6 55 19-73 19-77 (259)
212 PRK14244 phosphate ABC transpo 99.7 8.4E-17 1.8E-21 110.3 9.3 55 19-73 17-75 (251)
213 cd03298 ABC_ThiQ_thiamine_tran 99.7 1.1E-16 2.3E-21 107.1 9.5 48 25-73 16-63 (211)
214 PRK14249 phosphate ABC transpo 99.7 1.2E-16 2.5E-21 109.6 9.8 53 20-73 17-74 (251)
215 PRK14245 phosphate ABC transpo 99.7 1.3E-16 2.9E-21 109.3 10.0 55 19-73 15-73 (250)
216 PRK13546 teichoic acids export 99.7 1.3E-16 2.8E-21 111.4 10.1 52 18-70 35-86 (264)
217 PRK14252 phosphate ABC transpo 99.7 1.4E-16 2.9E-21 110.3 9.6 54 19-72 28-85 (265)
218 PRK14264 phosphate ABC transpo 99.7 1.7E-16 3.7E-21 112.4 10.0 55 19-73 57-115 (305)
219 PRK10938 putative molybdenum t 99.7 6.1E-17 1.3E-21 119.9 8.0 64 3-72 4-67 (490)
220 TIGR01277 thiQ thiamine ABC tr 99.7 1.2E-16 2.7E-21 107.2 8.8 51 22-73 13-63 (213)
221 PRK15134 microcin C ABC transp 99.7 1.3E-16 2.8E-21 119.3 9.7 70 3-73 6-79 (529)
222 cd03299 ABC_ModC_like Archeal 99.7 1.9E-16 4.2E-21 107.9 9.6 51 22-73 14-64 (235)
223 PRK11288 araG L-arabinose tran 99.7 1.2E-16 2.7E-21 118.8 9.4 54 19-73 16-69 (501)
224 TIGR01184 ntrCD nitrate transp 99.7 5.7E-17 1.2E-21 110.4 6.9 50 23-73 1-50 (230)
225 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 1.3E-16 2.8E-21 122.3 9.5 62 10-73 457-518 (686)
226 COG1129 MglA ABC-type sugar tr 99.7 7.7E-17 1.7E-21 121.7 8.1 65 3-73 9-73 (500)
227 PRK14258 phosphate ABC transpo 99.7 1.7E-16 3.6E-21 109.8 9.1 52 20-72 20-76 (261)
228 PRK14265 phosphate ABC transpo 99.7 1.8E-16 3.8E-21 110.7 9.3 55 19-73 32-90 (274)
229 TIGR02770 nickel_nikD nickel i 99.7 5.3E-17 1.2E-21 110.2 6.3 51 22-73 1-55 (230)
230 COG2884 FtsE Predicted ATPase 99.7 2.7E-17 5.9E-22 112.8 4.6 55 19-74 14-68 (223)
231 PRK10771 thiQ thiamine transpo 99.7 2.6E-16 5.6E-21 106.8 9.3 63 3-73 2-64 (232)
232 PRK10070 glycine betaine trans 99.7 1.2E-16 2.6E-21 117.7 8.3 54 19-73 40-93 (400)
233 PRK11176 lipid transporter ATP 99.7 1.2E-16 2.6E-21 120.0 8.4 54 19-73 355-408 (582)
234 PRK10261 glutathione transport 99.7 2.8E-16 6E-21 120.1 10.4 53 20-73 337-389 (623)
235 PRK10636 putative ABC transpor 99.7 1.5E-16 3.2E-21 122.0 8.9 62 3-70 2-63 (638)
236 PRK15177 Vi polysaccharide exp 99.7 8E-17 1.7E-21 109.0 6.5 50 21-71 1-51 (213)
237 PRK10982 galactose/methyl gala 99.7 1.6E-16 3.5E-21 117.9 8.6 54 19-73 10-63 (491)
238 PRK15064 ABC transporter ATP-b 99.7 2.1E-16 4.6E-21 118.3 9.0 61 3-69 2-62 (530)
239 PRK11147 ABC transporter ATPas 99.7 2.4E-16 5.2E-21 120.6 9.1 62 3-70 4-65 (635)
240 PRK10522 multidrug transporter 99.7 3.3E-16 7.2E-21 117.6 9.7 53 20-73 336-388 (547)
241 TIGR02857 CydD thiol reductant 99.7 2.3E-16 5E-21 117.5 8.8 53 20-73 335-387 (529)
242 PRK10938 putative molybdenum t 99.7 2.2E-16 4.8E-21 117.0 8.7 53 19-72 272-325 (490)
243 PRK13549 xylose transporter AT 99.7 1.7E-16 3.6E-21 118.2 7.9 55 19-73 274-328 (506)
244 COG4133 CcmA ABC-type transpor 99.7 1.2E-16 2.5E-21 109.2 6.5 57 18-75 13-69 (209)
245 TIGR03375 type_I_sec_LssB type 99.7 3E-16 6.6E-21 120.3 9.5 54 19-73 477-530 (694)
246 PRK10261 glutathione transport 99.7 3.7E-16 8E-21 119.5 9.8 67 4-72 14-80 (623)
247 TIGR02633 xylG D-xylose ABC tr 99.7 1.9E-16 4.1E-21 117.5 8.0 54 20-73 273-326 (500)
248 PRK11160 cysteine/glutathione 99.7 2.8E-16 6E-21 118.8 9.0 53 20-73 353-405 (574)
249 COG4555 NatA ABC-type Na+ tran 99.7 4.3E-17 9.3E-22 112.8 4.2 54 20-74 15-68 (245)
250 cd00267 ABC_ATPase ABC (ATP-bi 99.7 8E-16 1.7E-20 99.0 9.9 53 20-73 12-64 (157)
251 PRK10790 putative multidrug tr 99.7 3.1E-16 6.7E-21 118.2 9.1 53 20-73 354-406 (592)
252 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 2.7E-16 5.8E-21 120.8 8.9 62 10-73 483-544 (710)
253 COG4559 ABC-type hemin transpo 99.7 1E-16 2.3E-21 111.6 6.0 55 18-73 12-66 (259)
254 PRK14257 phosphate ABC transpo 99.7 5.5E-16 1.2E-20 111.4 9.9 55 19-73 94-152 (329)
255 PRK14246 phosphate ABC transpo 99.7 2.5E-16 5.4E-21 109.1 7.9 51 18-69 21-71 (257)
256 COG1134 TagH ABC-type polysacc 99.7 1.6E-16 3.5E-21 111.3 6.9 53 18-71 38-90 (249)
257 COG4604 CeuD ABC-type enteroch 99.7 1.1E-16 2.4E-21 110.8 5.8 57 17-74 11-67 (252)
258 TIGR01194 cyc_pep_trnsptr cycl 99.7 4.6E-16 1E-20 117.2 9.6 53 20-73 355-407 (555)
259 COG2274 SunT ABC-type bacterio 99.7 2.2E-16 4.7E-21 123.1 8.0 62 10-73 477-538 (709)
260 TIGR00958 3a01208 Conjugate Tr 99.7 3.2E-16 6.9E-21 121.0 8.9 63 10-73 484-546 (711)
261 cd03289 ABCC_CFTR2 The CFTR su 99.7 4.2E-16 9.1E-21 109.7 8.7 66 3-73 3-68 (275)
262 PRK11174 cysteine/glutathione 99.7 4.4E-16 9.6E-21 117.2 9.3 53 19-73 362-414 (588)
263 TIGR01193 bacteriocin_ABC ABC- 99.7 2.7E-16 5.8E-21 120.8 8.3 53 20-73 487-539 (708)
264 COG4525 TauB ABC-type taurine 99.7 1.2E-16 2.7E-21 110.6 5.7 54 20-74 18-71 (259)
265 PRK15134 microcin C ABC transp 99.7 3.7E-16 8E-21 116.9 8.5 52 20-73 299-350 (529)
266 TIGR03269 met_CoM_red_A2 methy 99.7 4.8E-16 1E-20 116.0 9.1 48 20-68 297-344 (520)
267 COG3845 ABC-type uncharacteriz 99.7 3.6E-16 7.8E-21 117.6 8.3 65 3-73 5-69 (501)
268 PRK11819 putative ABC transpor 99.7 4.7E-16 1E-20 117.3 8.8 62 3-69 7-68 (556)
269 TIGR02204 MsbA_rel ABC transpo 99.7 5.7E-16 1.2E-20 116.1 9.1 53 20-73 353-405 (576)
270 PRK09700 D-allose transporter 99.7 4E-16 8.8E-21 116.2 8.3 52 21-73 277-328 (510)
271 COG4619 ABC-type uncharacteriz 99.7 2.7E-16 5.8E-21 106.9 6.5 56 18-74 14-69 (223)
272 COG1122 CbiO ABC-type cobalt t 99.7 1.1E-15 2.4E-20 106.2 9.7 53 20-73 17-69 (235)
273 PRK11144 modC molybdate transp 99.7 1.2E-15 2.6E-20 110.1 10.0 48 25-73 16-63 (352)
274 cd03222 ABC_RNaseL_inhibitor T 99.7 3.8E-16 8.2E-21 104.2 6.9 52 18-71 11-62 (177)
275 TIGR03415 ABC_choXWV_ATP choli 99.7 4.8E-16 1E-20 114.1 8.0 52 18-70 35-86 (382)
276 TIGR03269 met_CoM_red_A2 methy 99.6 7.4E-16 1.6E-20 115.0 8.9 60 4-68 2-62 (520)
277 cd03291 ABCC_CFTR1 The CFTR su 99.6 8.5E-16 1.8E-20 108.4 8.8 49 20-69 50-98 (282)
278 TIGR02203 MsbA_lipidA lipid A 99.6 5.8E-16 1.3E-20 115.8 8.4 62 10-73 336-397 (571)
279 COG4608 AppF ABC-type oligopep 99.6 9.4E-16 2E-20 108.5 8.7 71 3-74 5-79 (268)
280 COG1137 YhbG ABC-type (unclass 99.6 4.3E-17 9.2E-22 112.7 1.8 57 17-74 14-70 (243)
281 PRK03695 vitamin B12-transport 99.6 4.8E-16 1E-20 106.9 7.0 50 22-73 11-60 (248)
282 PRK10789 putative multidrug tr 99.6 6.5E-16 1.4E-20 116.6 8.3 54 19-73 327-380 (569)
283 TIGR01842 type_I_sec_PrtD type 99.6 9.4E-16 2E-20 115.0 8.8 54 19-73 330-383 (544)
284 PRK15064 ABC transporter ATP-b 99.6 1E-15 2.2E-20 114.6 8.9 50 19-69 331-380 (530)
285 PRK13657 cyclic beta-1,2-gluca 99.6 1.1E-15 2.5E-20 115.3 9.1 53 20-73 348-400 (588)
286 PRK10982 galactose/methyl gala 99.6 1.1E-15 2.4E-20 113.4 8.5 53 20-73 261-313 (491)
287 cd03297 ABC_ModC_molybdenum_tr 99.6 1.1E-15 2.4E-20 102.5 7.7 47 25-73 16-62 (214)
288 COG1117 PstB ABC-type phosphat 99.6 6.2E-16 1.3E-20 107.7 6.5 64 9-75 12-79 (253)
289 PRK11819 putative ABC transpor 99.6 1.8E-15 3.9E-20 114.2 9.4 50 19-69 336-385 (556)
290 TIGR02142 modC_ABC molybdenum 99.6 1.1E-15 2.4E-20 110.3 7.9 48 25-73 15-62 (354)
291 TIGR01846 type_I_sec_HlyB type 99.6 1.3E-15 2.8E-20 117.0 8.6 54 19-73 469-522 (694)
292 PRK13545 tagH teichoic acids e 99.6 2.7E-15 5.8E-20 114.4 10.2 51 20-71 37-87 (549)
293 COG0396 sufC Cysteine desulfur 99.6 9.6E-16 2.1E-20 107.2 7.1 67 3-73 4-71 (251)
294 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.2E-15 2.7E-20 114.8 8.1 50 19-69 17-66 (552)
295 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.9E-15 4E-20 113.9 9.0 50 19-69 334-383 (552)
296 COG1101 PhnK ABC-type uncharac 99.6 4.7E-16 1E-20 108.5 5.1 70 5-75 4-73 (263)
297 PRK10636 putative ABC transpor 99.6 2.4E-15 5.2E-20 115.4 9.1 49 19-68 324-372 (638)
298 PRK11288 araG L-arabinose tran 99.6 9.1E-16 2E-20 114.2 6.6 52 21-73 267-318 (501)
299 TIGR01192 chvA glucan exporter 99.6 1.9E-15 4.2E-20 114.5 8.4 53 20-73 348-400 (585)
300 COG1132 MdlB ABC-type multidru 99.6 1.7E-15 3.7E-20 113.9 8.0 54 19-73 341-394 (567)
301 PRK11147 ABC transporter ATPas 99.6 2.9E-15 6.3E-20 114.6 9.2 49 19-68 331-379 (635)
302 COG1123 ATPase components of v 99.6 2.8E-15 6E-20 114.1 8.8 66 5-71 283-354 (539)
303 PRK10762 D-ribose transporter 99.6 1.1E-15 2.5E-20 113.7 6.5 52 21-73 266-317 (501)
304 PRK10535 macrolide transporter 99.6 6.2E-15 1.3E-19 113.2 10.1 69 3-73 5-73 (648)
305 COG4586 ABC-type uncharacteriz 99.6 5.1E-16 1.1E-20 111.1 3.8 55 17-72 34-88 (325)
306 COG0444 DppD ABC-type dipeptid 99.6 6.6E-15 1.4E-19 106.1 9.1 70 3-73 2-75 (316)
307 COG4988 CydD ABC-type transpor 99.6 3E-15 6.6E-20 114.1 7.7 62 9-73 325-386 (559)
308 PRK15439 autoinducer 2 ABC tra 99.6 2.1E-15 4.7E-20 112.6 6.8 51 22-73 278-328 (510)
309 COG1119 ModF ABC-type molybden 99.6 3.2E-15 7E-20 105.0 7.2 54 18-72 42-95 (257)
310 COG3840 ThiQ ABC-type thiamine 99.6 2.6E-15 5.6E-20 103.0 6.3 51 23-74 15-65 (231)
311 KOG0058|consensus 99.6 3.4E-15 7.4E-20 116.0 7.8 68 3-73 466-533 (716)
312 PLN03232 ABC transporter C fam 99.6 5.3E-15 1.2E-19 121.7 9.2 67 3-73 1235-1301(1495)
313 PLN03130 ABC transporter C fam 99.6 7.4E-15 1.6E-19 121.7 9.7 68 3-74 1238-1305(1622)
314 PLN03211 ABC transporter G-25; 99.6 4.2E-15 9.2E-20 114.8 7.2 55 19-73 80-135 (659)
315 COG4674 Uncharacterized ABC-ty 99.6 2.8E-15 6E-20 103.7 5.5 66 3-74 6-72 (249)
316 PTZ00243 ABC transporter; Prov 99.6 1E-14 2.2E-19 120.5 9.5 68 3-74 1309-1376(1560)
317 KOG0057|consensus 99.6 6.2E-15 1.3E-19 112.3 7.3 54 19-74 364-417 (591)
318 PLN03073 ABC transporter F fam 99.6 1.2E-14 2.5E-19 113.4 8.9 49 20-69 522-570 (718)
319 TIGR00956 3a01205 Pleiotropic 99.6 1.3E-14 2.9E-19 118.9 9.6 56 18-73 774-831 (1394)
320 TIGR01257 rim_protein retinal- 99.6 1.9E-14 4.1E-19 121.7 10.4 53 20-73 1952-2004(2272)
321 TIGR00957 MRP_assoc_pro multi 99.6 1.4E-14 3.1E-19 119.4 9.1 68 3-74 1285-1352(1522)
322 COG4181 Predicted ABC-type tra 99.6 1.1E-14 2.3E-19 99.4 7.0 57 17-74 20-76 (228)
323 cd03238 ABC_UvrA The excision 99.6 8.9E-15 1.9E-19 97.5 6.3 47 19-70 7-53 (176)
324 COG1123 ATPase components of v 99.6 2.1E-14 4.6E-19 109.3 9.0 70 3-73 6-78 (539)
325 PTZ00265 multidrug resistance 99.6 1.5E-14 3.3E-19 119.1 8.8 51 9-59 1170-1220(1466)
326 PTZ00265 multidrug resistance 99.5 1.6E-14 3.4E-19 119.0 8.4 53 20-73 398-451 (1466)
327 TIGR01257 rim_protein retinal- 99.5 2.9E-14 6.3E-19 120.6 10.0 54 19-73 942-995 (2272)
328 cd03236 ABC_RNaseL_inhibitor_d 99.5 5.5E-15 1.2E-19 102.9 4.7 45 20-66 14-58 (255)
329 COG4987 CydC ABC-type transpor 99.5 7.9E-15 1.7E-19 111.6 5.6 62 10-73 342-403 (573)
330 cd03237 ABC_RNaseL_inhibitor_d 99.5 1.4E-14 3.1E-19 100.2 6.5 50 20-70 7-61 (246)
331 PLN03073 ABC transporter F fam 99.5 3.4E-14 7.4E-19 110.8 8.4 52 19-70 189-242 (718)
332 COG4167 SapF ABC-type antimicr 99.5 7.4E-15 1.6E-19 101.4 3.9 69 4-73 6-78 (267)
333 COG0488 Uup ATPase components 99.5 2.8E-14 6.2E-19 108.4 7.1 51 18-69 14-64 (530)
334 TIGR03771 anch_rpt_ABC anchore 99.5 1.6E-14 3.4E-19 98.0 5.1 44 28-72 1-44 (223)
335 COG4598 HisP ABC-type histidin 99.5 1E-14 2.3E-19 100.3 4.1 56 17-73 16-71 (256)
336 TIGR00954 3a01203 Peroxysomal 99.5 4.9E-14 1.1E-18 108.6 8.3 50 19-69 464-513 (659)
337 TIGR01271 CFTR_protein cystic 99.5 6.1E-14 1.3E-18 115.6 9.3 66 3-73 1218-1283(1490)
338 TIGR00955 3a01204 The Eye Pigm 99.5 3.3E-14 7.1E-19 108.7 6.9 56 18-73 36-93 (617)
339 KOG0055|consensus 99.5 3.7E-14 8E-19 115.0 7.4 68 3-73 351-418 (1228)
340 PLN03140 ABC transporter G fam 99.5 1.2E-13 2.6E-18 114.0 9.5 55 19-73 892-947 (1470)
341 KOG0061|consensus 99.5 1.6E-13 3.4E-18 105.5 9.0 56 19-74 42-99 (613)
342 COG4618 ArpD ABC-type protease 99.5 8.5E-14 1.8E-18 105.8 7.0 59 14-73 343-401 (580)
343 COG4615 PvdE ABC-type sideroph 99.5 1.2E-13 2.5E-18 103.4 7.5 54 21-75 337-390 (546)
344 cd00820 PEPCK_HprK Phosphoenol 99.5 1.1E-13 2.5E-18 86.5 6.2 47 20-73 2-48 (107)
345 TIGR00956 3a01205 Pleiotropic 99.5 7.7E-14 1.7E-18 114.5 6.8 55 19-73 73-130 (1394)
346 PRK13409 putative ATPase RIL; 99.5 2E-13 4.3E-18 104.5 8.3 46 22-68 354-399 (590)
347 PLN03140 ABC transporter G fam 99.5 9.1E-14 2E-18 114.7 6.6 54 19-73 177-233 (1470)
348 COG4136 ABC-type uncharacteriz 99.4 6.4E-13 1.4E-17 89.5 8.2 56 18-73 13-70 (213)
349 KOG0056|consensus 99.4 2E-13 4.4E-18 104.4 6.5 62 9-73 542-603 (790)
350 COG4778 PhnL ABC-type phosphon 99.4 4.1E-13 9E-18 91.7 7.3 64 4-68 6-71 (235)
351 PRK13409 putative ATPase RIL; 99.4 7.2E-14 1.6E-18 106.9 3.9 45 20-66 87-131 (590)
352 TIGR03238 dnd_assoc_3 dnd syst 99.4 1.6E-13 3.5E-18 103.7 5.1 53 20-74 19-71 (504)
353 TIGR00957 MRP_assoc_pro multi 99.4 7.2E-13 1.6E-17 109.4 9.2 51 19-70 650-700 (1522)
354 COG4175 ProV ABC-type proline/ 99.4 4E-13 8.7E-18 98.0 6.5 55 18-73 39-93 (386)
355 KOG0055|consensus 99.4 6.8E-13 1.5E-17 107.8 7.3 67 7-74 990-1056(1228)
356 COG0488 Uup ATPase components 99.4 6.8E-13 1.5E-17 101.0 6.7 49 20-69 335-383 (530)
357 TIGR01271 CFTR_protein cystic 99.4 8.6E-13 1.9E-17 108.9 6.8 49 20-69 439-487 (1490)
358 PLN03130 ABC transporter C fam 99.3 3.4E-12 7.4E-17 106.1 8.6 50 19-69 629-679 (1622)
359 KOG0054|consensus 99.3 3.3E-12 7.1E-17 105.0 8.0 68 3-74 1139-1206(1381)
360 COG4107 PhnK ABC-type phosphon 99.3 1.5E-12 3.3E-17 89.5 5.1 51 17-68 16-66 (258)
361 PLN03232 ABC transporter C fam 99.3 8E-12 1.7E-16 103.2 9.3 55 10-65 620-674 (1495)
362 PTZ00243 ABC transporter; Prov 99.3 4.3E-12 9.2E-17 105.2 7.5 50 19-69 672-721 (1560)
363 COG4161 ArtP ABC-type arginine 99.2 1.2E-11 2.7E-16 84.3 5.4 65 1-71 1-65 (242)
364 cd03270 ABC_UvrA_I The excisio 99.2 1E-11 2.2E-16 84.8 3.0 33 18-50 6-38 (226)
365 COG4172 ABC-type uncharacteriz 99.2 6.6E-11 1.4E-15 88.9 7.4 70 3-73 7-80 (534)
366 COG4138 BtuD ABC-type cobalami 99.2 2.5E-11 5.4E-16 83.4 4.6 51 21-73 13-63 (248)
367 COG4172 ABC-type uncharacteriz 99.2 8.7E-11 1.9E-15 88.2 7.6 68 4-73 278-351 (534)
368 KOG0059|consensus 99.2 2.9E-11 6.4E-16 96.0 5.3 52 22-74 580-631 (885)
369 COG4178 ABC-type uncharacteriz 99.2 8.6E-11 1.9E-15 90.7 7.3 50 18-68 404-453 (604)
370 COG5265 ATM1 ABC-type transpor 99.2 4E-11 8.7E-16 90.0 5.3 62 9-73 267-328 (497)
371 COG4148 ModC ABC-type molybdat 99.2 5.3E-11 1.2E-15 86.0 5.5 51 22-73 13-63 (352)
372 TIGR01187 potA spermidine/putr 99.1 3.9E-11 8.6E-16 85.8 4.1 35 38-73 1-35 (325)
373 cd03278 ABC_SMC_barmotin Barmo 99.1 4.1E-11 8.8E-16 80.6 2.7 33 24-57 14-46 (197)
374 KOG0060|consensus 99.1 4.6E-10 1E-14 86.6 7.6 57 9-67 438-494 (659)
375 KOG0054|consensus 99.1 8E-10 1.7E-14 91.2 8.6 59 11-70 525-583 (1381)
376 KOG0065|consensus 99.0 3.7E-10 8E-15 92.7 4.4 56 18-73 802-858 (1391)
377 cd01130 VirB11-like_ATPase Typ 99.0 2.5E-10 5.4E-15 75.7 2.7 46 23-69 15-60 (186)
378 cd03283 ABC_MutS-like MutS-lik 99.0 5E-10 1.1E-14 75.6 3.9 36 20-57 14-49 (199)
379 KOG0927|consensus 99.0 1.8E-09 4E-14 82.9 6.7 42 18-59 86-127 (614)
380 cd03272 ABC_SMC3_euk Eukaryoti 98.9 1.2E-09 2.5E-14 74.3 4.8 33 18-55 13-45 (243)
381 KOG0064|consensus 98.9 2E-09 4.3E-14 83.1 6.1 49 18-67 493-541 (728)
382 COG2401 ABC-type ATPase fused 98.9 1.4E-09 3E-14 82.2 4.6 50 19-68 395-451 (593)
383 cd03280 ABC_MutS2 MutS2 homolo 98.9 2.9E-09 6.2E-14 71.2 5.5 33 22-54 16-49 (200)
384 cd03282 ABC_MSH4_euk MutS4 hom 98.9 2.3E-09 5E-14 72.8 4.6 39 18-56 14-52 (204)
385 cd03274 ABC_SMC4_euk Eukaryoti 98.9 1.4E-09 3.1E-14 73.9 3.5 32 18-54 15-46 (212)
386 KOG0927|consensus 98.8 1.2E-09 2.5E-14 83.9 2.1 46 21-67 404-449 (614)
387 cd03243 ABC_MutS_homologs The 98.8 6.2E-09 1.3E-13 69.6 5.4 33 23-55 19-51 (202)
388 KOG2355|consensus 98.8 1.4E-08 2.9E-13 71.5 7.1 51 19-70 26-76 (291)
389 PRK08149 ATP synthase SpaL; Va 98.8 9.6E-09 2.1E-13 76.9 6.5 53 18-72 137-192 (428)
390 PRK10078 ribose 1,5-bisphospho 98.8 9.3E-09 2E-13 68.0 5.5 37 33-73 2-38 (186)
391 cd03287 ABC_MSH3_euk MutS3 hom 98.8 5.4E-09 1.2E-13 72.0 4.4 49 19-67 17-65 (222)
392 KOG0062|consensus 98.8 4.7E-09 1E-13 80.3 3.6 39 17-55 90-128 (582)
393 TIGR02858 spore_III_AA stage I 98.8 1.1E-08 2.5E-13 72.3 5.2 39 34-73 112-150 (270)
394 PRK07721 fliI flagellum-specif 98.8 8.1E-09 1.8E-13 77.3 4.7 49 19-69 145-193 (438)
395 PRK06002 fliI flagellum-specif 98.8 2.4E-08 5.2E-13 75.2 7.0 48 19-68 152-199 (450)
396 cd03279 ABC_sbcCD SbcCD and ot 98.8 6.1E-09 1.3E-13 70.2 3.4 33 24-56 18-51 (213)
397 cd03273 ABC_SMC2_euk Eukaryoti 98.8 6.2E-09 1.4E-13 71.6 3.2 38 33-70 25-62 (251)
398 PRK07196 fliI flagellum-specif 98.8 8.9E-09 1.9E-13 77.1 4.2 40 18-58 141-180 (434)
399 PRK00300 gmk guanylate kinase; 98.7 1.1E-08 2.4E-13 67.8 4.1 27 31-57 3-29 (205)
400 cd03271 ABC_UvrA_II The excisi 98.7 8.3E-09 1.8E-13 72.7 3.6 34 20-53 8-41 (261)
401 PF13555 AAA_29: P-loop contai 98.7 1.8E-08 4E-13 57.6 4.2 36 23-58 12-48 (62)
402 PRK09825 idnK D-gluconate kina 98.7 1.6E-08 3.4E-13 67.1 4.3 35 32-71 2-36 (176)
403 TIGR00235 udk uridine kinase. 98.7 8.8E-09 1.9E-13 69.1 3.0 28 31-58 4-31 (207)
404 cd01136 ATPase_flagellum-secre 98.7 3.8E-08 8.2E-13 71.5 6.3 48 18-67 55-102 (326)
405 cd03240 ABC_Rad50 The catalyti 98.7 2.3E-08 4.9E-13 67.5 4.6 38 26-65 16-57 (204)
406 cd03284 ABC_MutS1 MutS1 homolo 98.7 2E-08 4.4E-13 68.5 3.9 37 19-56 17-53 (216)
407 PRK07594 type III secretion sy 98.7 3.8E-08 8.2E-13 73.8 5.5 50 18-69 141-190 (433)
408 PRK09099 type III secretion sy 98.7 5.1E-08 1.1E-12 73.2 5.9 50 18-69 149-198 (441)
409 cd03285 ABC_MSH2_euk MutS2 hom 98.7 5.5E-08 1.2E-12 66.6 5.5 36 19-54 16-51 (222)
410 TIGR02546 III_secr_ATP type II 98.6 5.1E-08 1.1E-12 72.7 4.9 48 18-67 131-178 (422)
411 TIGR02788 VirB11 P-type DNA tr 98.6 3E-08 6.5E-13 70.6 3.3 42 26-68 137-178 (308)
412 TIGR03498 FliI_clade3 flagella 98.6 9.5E-08 2.1E-12 71.3 5.9 51 18-70 126-176 (418)
413 TIGR03497 FliI_clade2 flagella 98.6 1.3E-07 2.8E-12 70.4 6.5 50 19-70 124-173 (413)
414 PF13476 AAA_23: AAA domain; P 98.6 6.2E-08 1.3E-12 62.7 4.2 34 23-57 10-43 (202)
415 TIGR01026 fliI_yscN ATPase Fli 98.6 9E-08 2E-12 71.8 5.3 47 19-67 150-196 (440)
416 PRK07960 fliI flagellum-specif 98.6 9.1E-08 2E-12 72.2 5.0 53 19-73 162-217 (455)
417 PRK03846 adenylylsulfate kinas 98.6 6.9E-08 1.5E-12 64.5 3.7 43 31-73 22-64 (198)
418 PRK09270 nucleoside triphospha 98.6 5.3E-08 1.1E-12 66.4 3.1 33 31-64 31-63 (229)
419 PLN02796 D-glycerate 3-kinase 98.5 1.5E-08 3.3E-13 74.2 0.2 53 21-73 80-142 (347)
420 PRK06315 type III secretion sy 98.5 1.2E-07 2.5E-12 71.4 4.9 49 18-67 150-198 (442)
421 TIGR02322 phosphon_PhnN phosph 98.5 1.3E-07 2.9E-12 61.5 4.6 25 33-57 1-25 (179)
422 PRK09862 putative ATP-dependen 98.5 7.1E-08 1.5E-12 73.5 3.4 51 18-69 195-245 (506)
423 PRK05688 fliI flagellum-specif 98.5 2E-07 4.2E-12 70.3 5.4 40 18-58 154-193 (451)
424 TIGR03496 FliI_clade1 flagella 98.5 2.6E-07 5.7E-12 68.8 6.0 46 19-66 124-169 (411)
425 TIGR00630 uvra excinuclease AB 98.5 1E-07 2.3E-12 76.7 4.1 31 21-51 621-651 (924)
426 cd03275 ABC_SMC1_euk Eukaryoti 98.5 9E-08 1.9E-12 65.9 3.3 32 34-66 23-54 (247)
427 COG1129 MglA ABC-type sugar tr 98.5 3.9E-07 8.4E-12 69.5 6.6 51 22-73 274-324 (500)
428 PRK08972 fliI flagellum-specif 98.5 2.1E-07 4.7E-12 70.0 5.2 39 18-57 148-186 (444)
429 PRK05922 type III secretion sy 98.5 3.5E-07 7.5E-12 68.7 6.2 47 18-66 143-189 (434)
430 TIGR03263 guanyl_kin guanylate 98.5 1.4E-07 3E-12 61.3 3.6 25 33-57 1-25 (180)
431 cd03276 ABC_SMC6_euk Eukaryoti 98.5 2.2E-07 4.7E-12 62.5 4.5 33 22-55 11-43 (198)
432 COG4170 SapD ABC-type antimicr 98.5 4.7E-07 1E-11 64.2 6.3 53 5-58 6-58 (330)
433 PRK00635 excinuclease ABC subu 98.5 2.9E-07 6.2E-12 78.0 5.8 31 21-51 609-639 (1809)
434 PRK13477 bifunctional pantoate 98.5 3.6E-07 7.8E-12 69.8 5.7 47 18-66 270-319 (512)
435 cd03281 ABC_MSH5_euk MutS5 hom 98.5 6E-07 1.3E-11 61.1 6.2 32 21-54 17-50 (213)
436 PRK06793 fliI flagellum-specif 98.4 4.9E-07 1.1E-11 67.9 6.1 50 19-70 143-192 (432)
437 COG1245 Predicted ATPase, RNas 98.4 2.2E-07 4.8E-12 70.9 4.1 43 21-64 350-397 (591)
438 PRK01889 GTPase RsgA; Reviewed 98.4 2.6E-07 5.7E-12 67.3 4.2 46 23-69 185-230 (356)
439 PRK06936 type III secretion sy 98.4 4.9E-07 1.1E-11 68.0 5.6 40 18-58 148-187 (439)
440 cd01131 PilT Pilus retraction 98.4 2.7E-07 5.8E-12 61.9 3.6 36 35-70 3-38 (198)
441 PRK04863 mukB cell division pr 98.4 5E-07 1.1E-11 75.6 5.9 48 22-71 17-64 (1486)
442 TIGR00606 rad50 rad50. This fa 98.4 4.4E-07 9.6E-12 74.7 5.5 38 34-71 29-70 (1311)
443 PRK08472 fliI flagellum-specif 98.4 3.4E-07 7.4E-12 68.7 4.4 49 20-70 145-193 (434)
444 cd00879 Sar1 Sar1 subfamily. 98.4 2.5E-07 5.4E-12 60.1 3.1 34 22-56 9-42 (190)
445 KOG0065|consensus 98.4 5.6E-07 1.2E-11 74.5 5.8 55 19-73 127-183 (1391)
446 PRK00349 uvrA excinuclease ABC 98.4 3.3E-07 7.2E-12 74.0 4.4 33 21-53 623-655 (943)
447 TIGR00554 panK_bact pantothena 98.4 2E-07 4.3E-12 66.7 2.7 36 32-67 61-97 (290)
448 smart00382 AAA ATPases associa 98.4 1.3E-06 2.9E-11 51.9 5.8 39 32-70 1-39 (148)
449 cd02023 UMPK Uridine monophosp 98.4 2.2E-07 4.8E-12 61.6 2.6 23 35-57 1-23 (198)
450 cd02026 PRK Phosphoribulokinas 98.4 3.8E-07 8.2E-12 64.4 3.8 33 35-68 1-33 (273)
451 TIGR00767 rho transcription te 98.4 1.2E-06 2.6E-11 65.6 6.5 33 25-57 160-192 (415)
452 PRK00635 excinuclease ABC subu 98.4 3.6E-07 7.9E-12 77.4 4.2 45 20-69 948-992 (1809)
453 KOG0066|consensus 98.4 2.8E-07 6.1E-12 70.7 3.2 48 18-66 598-645 (807)
454 cd03286 ABC_MSH6_euk MutS6 hom 98.4 7E-07 1.5E-11 61.4 4.9 38 19-56 16-53 (218)
455 cd02025 PanK Pantothenate kina 98.4 2.5E-07 5.4E-12 63.3 2.4 33 35-67 1-34 (220)
456 COG3845 ABC-type uncharacteriz 98.4 2.6E-06 5.7E-11 64.9 8.1 53 19-72 270-322 (501)
457 PRK05541 adenylylsulfate kinas 98.3 2.3E-07 5E-12 60.5 1.9 42 30-71 4-45 (176)
458 PRK00098 GTPase RsgA; Reviewed 98.3 7.4E-07 1.6E-11 63.3 4.6 35 32-67 163-197 (298)
459 TIGR00368 Mg chelatase-related 98.3 3E-07 6.6E-12 69.8 2.5 53 18-71 196-248 (499)
460 cd04155 Arl3 Arl3 subfamily. 98.3 1.4E-06 3.1E-11 55.5 5.1 37 35-71 16-59 (173)
461 cd03227 ABC_Class2 ABC-type Cl 98.3 1.2E-06 2.6E-11 56.9 4.5 35 23-57 11-45 (162)
462 cd01854 YjeQ_engC YjeQ/EngC. 98.3 8.3E-07 1.8E-11 62.8 4.0 42 24-67 153-194 (287)
463 PRK06820 type III secretion sy 98.3 1.7E-06 3.7E-11 65.1 5.8 43 18-62 149-191 (440)
464 PRK05480 uridine/cytidine kina 98.3 5.1E-07 1.1E-11 60.3 2.6 27 31-57 4-30 (209)
465 cd04104 p47_IIGP_like p47 (47- 98.3 1.2E-06 2.6E-11 58.4 4.1 32 36-68 4-35 (197)
466 TIGR01420 pilT_fam pilus retra 98.3 1.1E-06 2.4E-11 63.6 4.1 41 31-71 120-160 (343)
467 TIGR02524 dot_icm_DotB Dot/Icm 98.3 1E-06 2.2E-11 64.5 3.9 27 31-57 132-158 (358)
468 TIGR00455 apsK adenylylsulfate 98.2 7E-07 1.5E-11 58.6 2.5 44 29-72 14-57 (184)
469 PRK10416 signal recognition pa 98.2 6.2E-07 1.3E-11 64.7 2.4 40 31-71 112-151 (318)
470 COG3950 Predicted ATP-binding 98.2 6.8E-07 1.5E-11 66.4 2.6 54 20-73 11-64 (440)
471 TIGR01360 aden_kin_iso1 adenyl 98.2 6.2E-07 1.4E-11 58.2 2.1 32 33-65 3-37 (188)
472 KOG0066|consensus 98.2 1.9E-06 4.1E-11 66.3 4.9 54 18-71 275-329 (807)
473 cd03241 ABC_RecN RecN ATPase i 98.2 2.1E-06 4.6E-11 60.1 4.8 33 22-55 11-43 (276)
474 PF03193 DUF258: Protein of un 98.2 1.5E-06 3.3E-11 57.7 3.8 33 32-65 34-66 (161)
475 TIGR01069 mutS2 MutS2 family p 98.2 1.2E-06 2.5E-11 69.5 3.7 32 25-56 313-345 (771)
476 TIGR02168 SMC_prok_B chromosom 98.2 1.3E-06 2.8E-11 69.1 3.8 29 27-56 18-49 (1179)
477 PRK06995 flhF flagellar biosyn 98.2 8.3E-07 1.8E-11 67.4 2.5 36 22-57 245-280 (484)
478 PRK14721 flhF flagellar biosyn 98.2 1.1E-06 2.4E-11 65.7 3.0 27 30-56 188-214 (420)
479 PRK00889 adenylylsulfate kinas 98.2 1.2E-06 2.7E-11 57.0 2.9 39 31-70 2-41 (175)
480 PRK00064 recF recombination pr 98.2 2E-06 4.3E-11 62.7 4.1 35 22-57 13-47 (361)
481 PF13207 AAA_17: AAA domain; P 98.2 1.6E-06 3.4E-11 52.8 3.0 22 35-56 1-22 (121)
482 cd04159 Arl10_like Arl10-like 98.2 1.6E-06 3.4E-11 53.4 2.9 22 36-57 2-23 (159)
483 cd03242 ABC_RecF RecF is a rec 98.2 2.7E-06 5.8E-11 59.4 4.3 35 22-57 11-45 (270)
484 PLN03046 D-glycerate 3-kinase; 98.2 1.9E-06 4.2E-11 65.0 3.7 40 34-73 213-254 (460)
485 PRK14723 flhF flagellar biosyn 98.2 1.3E-06 2.7E-11 69.5 2.8 36 22-57 174-209 (767)
486 PLN02318 phosphoribulokinase/u 98.2 2.7E-06 5.8E-11 66.5 4.5 35 35-71 67-101 (656)
487 cd03239 ABC_SMC_head The struc 98.1 2.6E-06 5.6E-11 56.6 3.8 31 26-56 15-45 (178)
488 PF13304 AAA_21: AAA domain; P 98.1 4.4E-07 9.6E-12 58.3 0.0 22 35-56 1-22 (303)
489 cd03277 ABC_SMC5_euk Eukaryoti 98.1 3.4E-06 7.4E-11 57.4 4.2 34 23-57 14-47 (213)
490 PRK14722 flhF flagellar biosyn 98.1 2E-06 4.2E-11 63.6 2.8 37 20-56 124-160 (374)
491 cd00071 GMPK Guanosine monopho 98.1 2.6E-06 5.6E-11 54.3 2.7 23 35-57 1-23 (137)
492 PF02463 SMC_N: RecF/RecN/SMC 98.1 3.8E-06 8.2E-11 56.3 3.5 29 24-53 16-44 (220)
493 PF01926 MMR_HSR1: 50S ribosom 98.1 3.2E-06 6.9E-11 51.4 2.9 21 36-56 2-22 (116)
494 TIGR00611 recf recF protein. A 98.1 4.5E-06 9.8E-11 61.1 4.1 35 21-56 12-46 (365)
495 cd01876 YihA_EngB The YihA (En 98.1 3.2E-06 7E-11 52.4 2.9 22 36-57 2-25 (170)
496 PRK08927 fliI flagellum-specif 98.1 6.2E-06 1.3E-10 62.2 4.9 34 25-58 150-183 (442)
497 PRK10246 exonuclease subunit S 98.1 4.4E-06 9.5E-11 67.9 4.3 33 25-57 19-54 (1047)
498 TIGR00750 lao LAO/AO transport 98.1 2E-06 4.2E-11 61.1 1.9 38 20-57 21-58 (300)
499 PRK14738 gmk guanylate kinase; 98.1 4E-06 8.7E-11 56.5 3.4 26 31-56 11-36 (206)
500 PRK02224 chromosome segregatio 98.1 4.3E-06 9.3E-11 66.0 4.0 29 25-54 16-44 (880)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.84 E-value=1.6e-20 Score=132.14 Aligned_cols=66 Identities=32% Similarity=0.471 Sum_probs=56.6
Q ss_pred ceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 2 SLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++.++.++.| +.+.+++++||++++|++++|+||||||||||||+|+|++ +|.+|+|+++|+++.
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l-~p~~G~V~l~g~~i~ 67 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL-KPKSGEVLLDGKDIA 67 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCCchh
Confidence 34555555444 4589999999999999999999999999999999999997 578999999998765
No 2
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=5.6e-20 Score=133.92 Aligned_cols=55 Identities=31% Similarity=0.525 Sum_probs=52.0
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+...+++|+||+|++||+++|+|||||||||+||+|+|++ .|++|+|+++|++++
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~ 70 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDIT 70 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECC
Confidence 4689999999999999999999999999999999999997 578999999999886
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.2e-19 Score=127.06 Aligned_cols=54 Identities=35% Similarity=0.546 Sum_probs=50.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+|+|+||+|.+||+++|+||||||||||||+|+|++ .|++|+|.++|++++
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~ 68 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVT 68 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccC
Confidence 478999999999999999999999999999999999997 578999999998764
No 4
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.4e-19 Score=121.39 Aligned_cols=67 Identities=33% Similarity=0.442 Sum_probs=58.2
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|.++++++.+.|. .+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 67 (239)
T cd03296 1 MSIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDAT 67 (239)
T ss_pred CEEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 6677777766552 367999999999999999999999999999999999996 578999999998754
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.4e-19 Score=131.21 Aligned_cols=66 Identities=32% Similarity=0.488 Sum_probs=56.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++.+++.++| +...+++++||+|+.||+++|+||||||||||||+||||+ .+++|+|+++|++++.
T Consensus 4 i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 4 LELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCC
Confidence 5555555544 2223999999999999999999999999999999999997 5789999999998874
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=1.5e-19 Score=125.46 Aligned_cols=65 Identities=29% Similarity=0.485 Sum_probs=56.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.++++++| +...+|++||++|++||+++|+||||||||||||||.+|+ ++++|+|+++|.++.
T Consensus 3 i~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceEEECCEecc
Confidence 4455555544 5689999999999999999999999999999999999997 578999999997654
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=3.3e-19 Score=123.55 Aligned_cols=68 Identities=32% Similarity=0.414 Sum_probs=57.1
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.|.... ....+|++++|+|++||+++|+|||||||||||++|+|+.. |++|.++++|.+++
T Consensus 3 ~~~~v~k~y~~~~-~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G~v~i~g~d~~ 70 (226)
T COG1136 3 ELKNVSKIYGLGG-EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSGEVLINGKDLT 70 (226)
T ss_pred EEeeeEEEeccCC-cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEcC
Confidence 4555655554332 33789999999999999999999999999999999999975 69999999998776
No 8
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.7e-19 Score=123.46 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=59.8
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|.++++++.++|.......+.+|+++||+|++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTVTVDDITIT 72 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECc
Confidence 567777777766321111246999999999999999999999999999999999997 578999999998764
No 9
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=9.7e-19 Score=118.76 Aligned_cols=64 Identities=34% Similarity=0.492 Sum_probs=54.2
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.| +.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~ 65 (235)
T cd03261 2 ELRGLTKSF-----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVLIDGEDIS 65 (235)
T ss_pred eEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 344554444 2357999999999999999999999999999999999996 578999999998764
No 10
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.79 E-value=8.9e-19 Score=117.49 Aligned_cols=53 Identities=38% Similarity=0.592 Sum_probs=49.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~ 69 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDIS 69 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEEECCEehh
Confidence 57999999999999999999999999999999999996 578999999998764
No 11
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.79 E-value=1.2e-18 Score=116.92 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=55.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++++++|. .+.+.+++++||++++|++++|+||||||||||+++|+|++ +|++|+|.++|+++.
T Consensus 2 l~~~~l~~~~~---~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYP---GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEec---CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEehh
Confidence 45566655542 12246999999999999999999999999999999999996 578999999998764
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.9e-19 Score=123.68 Aligned_cols=53 Identities=38% Similarity=0.548 Sum_probs=49.2
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++|+||||++++|++++|+||||||||||+|+|.|++ +|.+|+|.+++.+.++
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~ 70 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRK 70 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccc
Confidence 6999999999999999999999999999999999997 4789999999886654
No 13
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.79 E-value=1.3e-18 Score=122.93 Aligned_cols=67 Identities=25% Similarity=0.404 Sum_probs=59.1
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|.++++.+.++| +...+++++||++++|++++|+|||||||||||++|+|++ +|++|+|.++|.++.
T Consensus 1 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 1 MSIRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSVQVCGEDVL 67 (301)
T ss_pred CEEEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 567777777766 2367999999999999999999999999999999999996 578999999998764
No 14
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.3e-18 Score=118.55 Aligned_cols=66 Identities=32% Similarity=0.330 Sum_probs=57.5
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
|.+.++++.+.|. .+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|.++|.++
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~ 66 (242)
T PRK11124 1 MSIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHF 66 (242)
T ss_pred CEEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEec
Confidence 6677777766552 357999999999999999999999999999999999996 57899999999875
No 15
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9.8e-19 Score=121.76 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=58.2
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|-++++++.++|........++++++||+|++|++++|+|||||||||||++|+|+. +|++|+|+++|+++.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLIT 72 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 556677776655311101246999999999999999999999999999999999996 578999999998764
No 16
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-18 Score=116.75 Aligned_cols=64 Identities=30% Similarity=0.438 Sum_probs=54.3
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.++| +.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~ 65 (213)
T cd03259 2 ELKGLSKTY-----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVT 65 (213)
T ss_pred eeeeeEEEe-----CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcC
Confidence 344555544 2357999999999999999999999999999999999996 578999999998764
No 17
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=1.3e-18 Score=116.79 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=54.9
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.|. .+.+++++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 2 ~~~~l~~~~~---~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 67 (220)
T cd03263 2 QIRNLTKTYK---KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAYINGYSIR 67 (220)
T ss_pred EEEeeEEEeC---CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecc
Confidence 3455555442 11267999999999999999999999999999999999996 578999999998764
No 18
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=122.24 Aligned_cols=72 Identities=19% Similarity=0.316 Sum_probs=58.1
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|.++++.+.+.|.......+.++++|||+|++||+++|+||||||||||+++|+|++ +|.+|+|+++|.++.
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 72 (287)
T PRK13637 1 MSIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDIT 72 (287)
T ss_pred CEEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECC
Confidence 445666666655211111257999999999999999999999999999999999997 578999999998764
No 19
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=121.99 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=58.0
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|.++++++.+.|.......+.+++++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 1 ~~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 1 MSIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTITIAGYHIT 72 (287)
T ss_pred CEEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECc
Confidence 446666666655311111256999999999999999999999999999999999997 578999999998763
No 20
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.8e-18 Score=116.48 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=54.2
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.++| +.+.++++++|++.+|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 2 ~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 65 (220)
T cd03265 2 EVENLVKKY-----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVV 65 (220)
T ss_pred EEEEEEEEE-----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecC
Confidence 345555544 2357999999999999999999999999999999999996 578999999997653
No 21
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=3e-18 Score=111.76 Aligned_cols=64 Identities=33% Similarity=0.404 Sum_probs=54.7
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++++.|. .++++++++|++++||+++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 2 ~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~ 65 (163)
T cd03216 2 ELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVS 65 (163)
T ss_pred EEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECC
Confidence 4455555442 357999999999999999999999999999999999996 578999999998764
No 22
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.78 E-value=2e-18 Score=115.40 Aligned_cols=53 Identities=28% Similarity=0.459 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~v~~~g~~~~ 65 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVT 65 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 57999999999999999999999999999999999996 578999999998764
No 23
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.78 E-value=1.8e-18 Score=116.07 Aligned_cols=53 Identities=32% Similarity=0.448 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 65 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-PPRSGSIRFDGRDIT 65 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcC
Confidence 57999999999999999999999999999999999996 578999999998764
No 24
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.9e-18 Score=115.47 Aligned_cols=64 Identities=27% Similarity=0.344 Sum_probs=54.0
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.| +.+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (210)
T cd03269 2 EVENVTKRF-----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLD 65 (210)
T ss_pred EEEEEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchh
Confidence 345555543 2357999999999999999999999999999999999996 578999999997653
No 25
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-18 Score=121.61 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=58.4
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|.++++++.++|........++|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 1 MDITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTVTIGERVIT 72 (290)
T ss_pred CEEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECc
Confidence 445666776665321111256999999999999999999999999999999999997 578999999998764
No 26
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.3e-18 Score=121.03 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=53.8
Q ss_pred CCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 16 PSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 16 ~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.|+..++|++|||++++||+++|+|+||+||||||++|+|+. ++.+|+|.|+|++++.
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~-~~~~G~I~~~G~dit~ 69 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV-RPRSGRIIFDGEDITG 69 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeeEEECCeecCC
Confidence 356789999999999999999999999999999999999997 5679999999999885
No 27
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.78 E-value=2.5e-18 Score=115.52 Aligned_cols=68 Identities=28% Similarity=0.373 Sum_probs=55.0
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.|.. ..+...+++++||++++|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 3 ~~~~v~~~~~~-~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 3 KCENLGKRYQE-GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGQSLS 70 (221)
T ss_pred EEEeeeEEccC-CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhh
Confidence 44555554421 112357999999999999999999999999999999999996 578999999998764
No 28
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.78 E-value=2e-18 Score=116.95 Aligned_cols=53 Identities=32% Similarity=0.525 Sum_probs=49.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 65 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDIT 65 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEECC
Confidence 57999999999999999999999999999999999996 578999999998764
No 29
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=2.2e-18 Score=116.49 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=54.1
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.++| +.+.+++++||++++|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 65 (232)
T cd03218 2 RAENLSKRY-----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKILLDGQDIT 65 (232)
T ss_pred eEEEEEEEe-----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecc
Confidence 344554444 2357999999999999999999999999999999999996 578999999998753
No 30
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.77 E-value=2.6e-18 Score=114.74 Aligned_cols=53 Identities=30% Similarity=0.420 Sum_probs=49.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|.++|+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLT 65 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECC
Confidence 57999999999999999999999999999999999996 578999999998763
No 31
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.9e-18 Score=117.27 Aligned_cols=66 Identities=29% Similarity=0.420 Sum_probs=55.9
Q ss_pred ceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 2 SLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++++++.++| +...+++++||++.+|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 68 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSILIDGVDIK 68 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhh
Confidence 35566665543 2357999999999999999999999999999999999996 578999999998764
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.77 E-value=3e-18 Score=124.07 Aligned_cols=67 Identities=28% Similarity=0.519 Sum_probs=58.7
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|.++++.+.++| +...+++++||++++||+++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 1 ~~L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~ 67 (353)
T PRK10851 1 MSIEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVS 67 (353)
T ss_pred CEEEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC
Confidence 667777777665 2357999999999999999999999999999999999996 578999999998764
No 33
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.3e-18 Score=115.44 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=56.3
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN--EKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~--~~~G~i~~~~~~~~ 73 (76)
..+++.+.|...+ +.+.+++++||++++|++++|+||||||||||+++|+|++++ +++|+|.++|.++.
T Consensus 5 ~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~ 75 (202)
T cd03233 5 SWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75 (202)
T ss_pred EEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc
Confidence 3445544444322 456899999999999999999999999999999999999743 68999999998764
No 34
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.1e-18 Score=115.70 Aligned_cols=53 Identities=30% Similarity=0.486 Sum_probs=49.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|+++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGDVIFNGQPMS 74 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcC
Confidence 57999999999999999999999999999999999996 578999999998764
No 35
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.77 E-value=2.5e-18 Score=115.07 Aligned_cols=66 Identities=26% Similarity=0.388 Sum_probs=55.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|. +...+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-TPSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcc
Confidence 34555555441 2357999999999999999999999999999999999996 578999999998764
No 36
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=2.8e-18 Score=114.42 Aligned_cols=65 Identities=26% Similarity=0.397 Sum_probs=55.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++++.++| +...+++++||++++||+++|+||||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDY-----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEe-----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccc
Confidence 4455555544 2357999999999999999999999999999999999996 578999999998764
No 37
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3e-18 Score=115.36 Aligned_cols=53 Identities=36% Similarity=0.532 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 69 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVLVDGEPVT 69 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECc
Confidence 57999999999999999999999999999999999996 578999999998764
No 38
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=3e-18 Score=115.84 Aligned_cols=53 Identities=28% Similarity=0.455 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++++||++++|++++|+||||||||||+++|+|+. +|.+|+|.++|.++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL-PVKSGSIRLDGEDIT 65 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECC
Confidence 57999999999999999999999999999999999997 578999999998764
No 39
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.77 E-value=2.9e-18 Score=124.01 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=58.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|... .+...+++++||+|++|++++|+||||||||||+|+|+|++ +|++|+|+++|+++.
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 4566776666321 12357999999999999999999999999999999999997 578999999998875
No 40
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=3.8e-18 Score=114.11 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=54.6
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++.++| +.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 3 ~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~v~~~g~~~~ 66 (204)
T PRK13538 3 EARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-RPDAGEVLWQGEPIR 66 (204)
T ss_pred EEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcc
Confidence 445555544 2357999999999999999999999999999999999996 578999999998764
No 41
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.77 E-value=2.9e-18 Score=116.44 Aligned_cols=65 Identities=31% Similarity=0.408 Sum_probs=54.6
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~G~i~~~~~~~~ 73 (76)
+++++.+.| +.+.+++++||+|++|++++|+||||||||||+++|+|+.. +|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 2 KIKDLHVSV-----EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred eEeeEEEEE-----CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 345555544 23679999999999999999999999999999999999952 478999999998754
No 42
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.77 E-value=2.7e-18 Score=115.49 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+|||||||||||++|+|+. +|++|+|.++|.++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 70 (228)
T cd03257 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLL 70 (228)
T ss_pred eeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcc
Confidence 37999999999999999999999999999999999996 578999999998764
No 43
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.77 E-value=3.1e-18 Score=114.36 Aligned_cols=64 Identities=28% Similarity=0.443 Sum_probs=54.4
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.++| +..++++++||++++|++++|+||||||||||+++|+|+. ++++|+|.++|.++.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 65 (208)
T cd03268 2 KTNDLTKTY-----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQ 65 (208)
T ss_pred EEEEEEEEE-----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCCccc
Confidence 345555544 1357999999999999999999999999999999999996 578999999997654
No 44
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.6e-18 Score=116.49 Aligned_cols=53 Identities=36% Similarity=0.522 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 66 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDIN 66 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEecc
Confidence 57999999999999999999999999999999999997 578999999998764
No 45
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.77 E-value=3.3e-18 Score=121.40 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=50.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
...+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.+
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGSISLCGEPVPS 73 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEeccc
Confidence 467999999999999999999999999999999999997 5789999999988653
No 46
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4e-18 Score=117.93 Aligned_cols=65 Identities=32% Similarity=0.510 Sum_probs=54.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.| +...+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADY-----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEe-----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC
Confidence 3445555544 2357999999999999999999999999999999999996 578999999998764
No 47
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.77 E-value=3.7e-18 Score=114.06 Aligned_cols=53 Identities=30% Similarity=0.438 Sum_probs=49.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~ 66 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVS 66 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcc
Confidence 57999999999999999999999999999999999996 578999999998764
No 48
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=5.2e-18 Score=111.56 Aligned_cols=64 Identities=34% Similarity=0.500 Sum_probs=54.1
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.| +.++++++++|++++|++++|+||||||||||+++|+|+. ++++|+|.++|+++.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (178)
T cd03229 2 ELKNVSKRY-----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLT 65 (178)
T ss_pred EEEEEEEEE-----CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 345555544 1257999999999999999999999999999999999996 578999999998764
No 49
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=3.2e-19 Score=124.83 Aligned_cols=64 Identities=27% Similarity=0.446 Sum_probs=56.4
Q ss_pred EEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 5 THVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.+.++++| ++-.+++||||++++||+++||||||||||||+|+|+|++ +|++|.|+++|++++.
T Consensus 7 v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~ 70 (250)
T COG0411 7 VRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITG 70 (250)
T ss_pred eccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCC
Confidence 44444544 5688999999999999999999999999999999999997 5789999999998874
No 50
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.77 E-value=4.5e-18 Score=115.70 Aligned_cols=54 Identities=33% Similarity=0.506 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLR 66 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcc
Confidence 367999999999999999999999999999999999996 578999999998764
No 51
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=5.2e-18 Score=113.81 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=55.8
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
|-++++++.+.| +...+++++||+|++|++++|+||||||||||+++|+|+. ++++|+|.++|.++
T Consensus 1 m~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~ 66 (207)
T PRK13539 1 MMLEGEDLACVR-----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTIKLDGGDI 66 (207)
T ss_pred CEEEEEeEEEEE-----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeC
Confidence 335566666654 2357999999999999999999999999999999999996 57899999999765
No 52
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.5e-18 Score=120.40 Aligned_cols=68 Identities=31% Similarity=0.406 Sum_probs=57.6
Q ss_pred ceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 2 SLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.++.+++.+.|- +.+++|++|+|+|++||+++|+||||||||||||+|+|+. ++..|+|.++|.++.+
T Consensus 3 ~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~ 70 (258)
T COG3638 3 MIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITK 70 (258)
T ss_pred eEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhc
Confidence 355555555442 5689999999999999999999999999999999999997 5789999999977654
No 53
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.77 E-value=5.1e-18 Score=112.86 Aligned_cols=54 Identities=24% Similarity=0.443 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++.+|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALA 65 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcc
Confidence 367999999999999999999999999999999999996 578999999998754
No 54
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.77 E-value=3.4e-18 Score=114.63 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=55.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|... ....++++++||++++|++++|+|+||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 2 l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEEcc
Confidence 3455555544211 11127999999999999999999999999999999999996 578999999998764
No 55
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.77 E-value=2.9e-18 Score=115.75 Aligned_cols=54 Identities=35% Similarity=0.522 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc----CCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK----NEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~----~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++|++++|+||||||||||+++|+|+.. ++++|+|.++|+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence 579999999999999999999999999999999999961 468999999998764
No 56
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.77 E-value=4e-18 Score=120.36 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=54.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 5 i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 5 IDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGKITVLGEPVP 69 (303)
T ss_pred EEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECc
Confidence 4445555544 2367999999999999999999999999999999999996 578999999998763
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.77 E-value=2.2e-18 Score=117.19 Aligned_cols=54 Identities=33% Similarity=0.474 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|++++|+|||||||||||++|+|+. +|++|+|.++|.++.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDIT 67 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhh
Confidence 356999999999999999999999999999999999996 578999999998764
No 58
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=4.8e-18 Score=114.54 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=55.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. +.+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 44555555542 2357999999999999999999999999999999999996 578999999998764
No 59
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=3.2e-18 Score=114.33 Aligned_cols=53 Identities=30% Similarity=0.512 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++|++++|+||||||||||+++|+|++ ++++|+|.++|.++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 66 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLT 66 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcc
Confidence 57999999999999999999999999999999999996 578999999998764
No 60
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=3e-18 Score=121.44 Aligned_cols=55 Identities=35% Similarity=0.483 Sum_probs=51.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.+.+|++|||++++|++++|+||||||||||||+|+|+. .|++|+|.++|.+..+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~-~p~~G~i~i~G~~~~~ 71 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-KPTSGEILVLGYDVVK 71 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEEcCEeCcc
Confidence 578999999999999999999999999999999999997 4689999999987654
No 61
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.76 E-value=4.8e-18 Score=114.76 Aligned_cols=53 Identities=30% Similarity=0.461 Sum_probs=49.1
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQPLH 75 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeeEEECCEEcc
Confidence 36999999999999999999999999999999999996 578999999998764
No 62
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.76 E-value=3.6e-18 Score=123.16 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=50.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+.+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDAGKITVLGVPVP 106 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCceEEEECCEECC
Confidence 4567999999999999999999999999999999999997 578999999998765
No 63
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5e-18 Score=116.75 Aligned_cols=67 Identities=28% Similarity=0.432 Sum_probs=56.5
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|-++++++.++| +.+.+++++||++++|++++|+|||||||||||++|+|+. ++++|+|.++|.++.
T Consensus 1 ~~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 67 (255)
T PRK11231 1 MTLRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTVFLGDKPIS 67 (255)
T ss_pred CEEEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEEEECCEEhH
Confidence 445566665544 2367999999999999999999999999999999999996 578999999998753
No 64
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.4e-18 Score=123.34 Aligned_cols=70 Identities=29% Similarity=0.299 Sum_probs=60.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++.+++.|.....+...+++||||+|++|+++||+|.||||||||+|+|.+|+ .|++|+|+++|++++
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-RPTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-CCCCceEEEcCEecc
Confidence 4567777777654334578999999999999999999999999999999999997 578999999998775
No 65
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.2e-18 Score=115.54 Aligned_cols=54 Identities=22% Similarity=0.446 Sum_probs=49.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 68 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNIIIDDEDIS 68 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC
Confidence 367999999999999999999999999999999999996 578999999998764
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=6.2e-18 Score=115.10 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=54.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++++.+.| +.+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHF-----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEE-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 3445555544 2357999999999999999999999999999999999996 578999999998764
No 67
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=7.7e-18 Score=110.31 Aligned_cols=64 Identities=30% Similarity=0.430 Sum_probs=54.2
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.++|. ...++++++|++++||+++|+||||||||||+++|+|+. +|.+|+|.++|.++.
T Consensus 2 ~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (173)
T cd03230 2 EVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIK 65 (173)
T ss_pred EEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcc
Confidence 3455555442 246999999999999999999999999999999999996 578999999998764
No 68
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.3e-18 Score=122.89 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=56.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|. +...+++++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 4 l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECC
Confidence 55666666552 2357999999999999999999999999999999999997 578999999998774
No 69
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.76 E-value=2.1e-18 Score=113.95 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|++ ++++|+|.++|+++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 57 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLD 57 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEcc
Confidence 457999999999999999999999999999999999996 578999999998763
No 70
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=3.4e-18 Score=114.06 Aligned_cols=53 Identities=30% Similarity=0.432 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+|||||||||||++|+|+. +|++|+|.++|.+++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 65 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIK 65 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhh
Confidence 57999999999999999999999999999999999996 578999999998763
No 71
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.76 E-value=6e-18 Score=117.53 Aligned_cols=54 Identities=30% Similarity=0.469 Sum_probs=49.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|+++|+++.
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 72 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGEILFDGENIP 72 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcc
Confidence 467999999999999999999999999999999999997 578999999998764
No 72
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.8e-18 Score=115.59 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++++||++.+|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 70 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTILLRGQHIE 70 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcceEEECCEECC
Confidence 467999999999999999999999999999999999996 578999999998764
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.76 E-value=5.4e-18 Score=115.84 Aligned_cols=65 Identities=26% Similarity=0.460 Sum_probs=54.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.| +.+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|.++|.++.
T Consensus 4 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKF-----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcc
Confidence 4444554443 2357999999999999999999999999999999999996 578999999998764
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.6e-18 Score=115.26 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|.++|.++.
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 66 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIR 66 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcC
Confidence 56999999999999999999999999999999999996 578999999998764
No 75
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.76 E-value=2.6e-18 Score=115.02 Aligned_cols=52 Identities=37% Similarity=0.507 Sum_probs=48.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
..+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|+++
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~ 63 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPL 63 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccH
Confidence 57999999999999999999999999999999999996 57899999998764
No 76
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.9e-18 Score=120.72 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=56.9
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
|.++++++.++|.........+++++||+|.+||+++|+||||||||||+++|+|++ +|++|+|+++|.+.
T Consensus 1 m~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~~ 71 (305)
T PRK13651 1 MQIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTIEWIFKDE 71 (305)
T ss_pred CEEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEeceec
Confidence 446667776665321111246999999999999999999999999999999999997 57899999987653
No 77
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.6e-18 Score=119.02 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=56.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|.......+.+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|.+++
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEECc
Confidence 4566666655311111246999999999999999999999999999999999997 578999999998864
No 78
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=7e-18 Score=121.40 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=57.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|.. +...+.+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 2 i~i~~l~~~y~~-~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQ-GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCC-CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 455666665531 112467999999999999999999999999999999999997 578999999998764
No 79
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.7e-18 Score=116.89 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=50.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
...+++++||+|++|++++|+|||||||||||++|+|+.++ +++|+|+++|+++.
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 36799999999999999999999999999999999999753 47999999998764
No 80
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.5e-18 Score=122.13 Aligned_cols=65 Identities=26% Similarity=0.406 Sum_probs=56.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+++++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 4 l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 5566666655 2357999999999999999999999999999999999997 578999999998764
No 81
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.2e-18 Score=115.17 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=56.2
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEECCEecc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--NEKEEEKKKKKKEKE 73 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~~~~G~i~~~~~~~~ 73 (76)
|-++++++.+.| +.+.+++++||++++|++++|+||||||||||+++|+|+.. +|++|+|.++|+++.
T Consensus 1 ~~~~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~ 70 (246)
T PRK14269 1 MIAKTTNLNLFY-----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70 (246)
T ss_pred CceeeeeeEEEE-----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecc
Confidence 334555555544 23579999999999999999999999999999999999964 368999999998764
No 82
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.7e-18 Score=117.71 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++.+|++++|+|||||||||||++|+|++ ++++|+|.++|+++.
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHGHVWLDGEHIQ 72 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEEhh
Confidence 367999999999999999999999999999999999996 578999999998764
No 83
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.9e-18 Score=120.09 Aligned_cols=71 Identities=25% Similarity=0.268 Sum_probs=59.1
Q ss_pred ceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 2 SLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.++.+++.+.|.... ...+++++|||++.+||+++|+|+||||||||.++|+|++ +|++|+|.++|+++.+
T Consensus 3 ~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 3 LLSVRNLSIVYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAP 73 (252)
T ss_pred eEEEeceEEEecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCc
Confidence 366677777665432 2236999999999999999999999999999999999997 4789999999976654
No 84
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-17 Score=116.89 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=49.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+|+++||+|++|++++|+||||||||||+++|+|+. +|.+|+|+++|.++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 72 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQIIIDGDLLT 72 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECC
Confidence 46999999999999999999999999999999999997 578999999998875
No 85
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.7e-18 Score=114.76 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=50.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~ 70 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGRIVFDGKDIT 70 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEecC
Confidence 367999999999999999999999999999999999996 578999999998764
No 86
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.1e-18 Score=117.53 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=55.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. ...+.+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 6 l~~~~l~~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYP---DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeC---CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECC
Confidence 45555555442 12356999999999999999999999999999999999997 578999999998764
No 87
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.3e-18 Score=115.22 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=49.1
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
..+++++||++++||+++|+||||||||||+++|+|++++ +++|+|+++|+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 5799999999999999999999999999999999999753 25999999998764
No 88
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=4.1e-18 Score=115.41 Aligned_cols=69 Identities=29% Similarity=0.351 Sum_probs=55.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|... .+..++++++||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT-GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC-CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcc
Confidence 3455555554211 01137999999999999999999999999999999999997 578999999998764
No 89
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=9e-18 Score=115.63 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=54.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEec
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEK 72 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~ 72 (76)
++++++.++| +...+++++||++++|++++|+|||||||||||++|+|+..+ |++|+|.++|.++
T Consensus 5 l~i~~v~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 5 IDVKDLNIYY-----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred EEEeeEEEEE-----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 3445555544 235799999999999999999999999999999999999753 2699999999876
No 90
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=119.82 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=58.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN---EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~---~~~G~i~~~~~~~~ 73 (76)
++++++.+.|... .+...++++|||+|.+||+++|+|+||||||||+++|+|++++ +++|+|+++|+++.
T Consensus 4 L~v~~l~~~y~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 4 LDIRNLTIEFKTS-DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred EEEeeeEEEEeCC-CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 5667777776532 2346799999999999999999999999999999999999753 47899999998764
No 91
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.75 E-value=5.9e-18 Score=114.72 Aligned_cols=54 Identities=31% Similarity=0.477 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDIS 72 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcC
Confidence 357999999999999999999999999999999999996 578999999998764
No 92
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=1e-17 Score=110.05 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=54.1
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.|. . ....+++++||++++|++++|+||||||||||+++|+|+. ++.+|+|.++|.++.
T Consensus 2 ~~~~~~~~~~--~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~ 67 (178)
T cd03247 2 SINNVSFSYP--E-QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVS 67 (178)
T ss_pred EEEEEEEEeC--C-CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHH
Confidence 3455555442 1 1236999999999999999999999999999999999996 578999999998653
No 93
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.75 E-value=1e-17 Score=114.88 Aligned_cols=53 Identities=30% Similarity=0.452 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQLY 65 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 57999999999999999999999999999999999996 578999999998763
No 94
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.75 E-value=1.1e-17 Score=121.23 Aligned_cols=65 Identities=32% Similarity=0.491 Sum_probs=55.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+++++||++++|++++|+|||||||||||++|+|++ +|++|+|.++|++++
T Consensus 5 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 5 LSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGRDIT 69 (353)
T ss_pred EEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEEEECCEECC
Confidence 4455555544 2367999999999999999999999999999999999997 578999999998775
No 95
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.75 E-value=1.3e-17 Score=109.90 Aligned_cols=53 Identities=38% Similarity=0.575 Sum_probs=49.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~ 64 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLA 64 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC
Confidence 57999999999999999999999999999999999996 578999999998764
No 96
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.75 E-value=8e-18 Score=116.80 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=56.8
Q ss_pred eeEEEEEEEEEeCC----CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEP----SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|.... .+..++++++||++++|++++|+|||||||||||++|+|++ +|++|+|.++|.+++
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECC
Confidence 45566666553110 01357999999999999999999999999999999999997 578999999998764
No 97
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.5e-18 Score=117.52 Aligned_cols=52 Identities=17% Similarity=0.338 Sum_probs=48.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
..+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i 75 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-ISETGQTIVGDYAI 75 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEc
Confidence 35999999999999999999999999999999999996 57899999999875
No 98
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.6e-18 Score=116.17 Aligned_cols=54 Identities=30% Similarity=0.493 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|.++|.++.
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGEILLDAQPLE 76 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEehh
Confidence 357999999999999999999999999999999999996 578999999998763
No 99
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.75 E-value=1.1e-17 Score=115.07 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=54.3
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.| +.+.+++++||++++|++++|+||||||||||+++|+|++ ++++|+|+++|.++.
T Consensus 3 ~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 3 RLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-RPDAGTVDLAGVDLH 66 (256)
T ss_pred eEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEEcc
Confidence 445554443 2367999999999999999999999999999999999997 578999999998764
No 100
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=6.7e-18 Score=113.43 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=55.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|. ...+.+++++||++++|++++|+||||||||||+++|+|+. +|.+|+|+++|.++.
T Consensus 3 l~~~~l~~~~~---~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYR---PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecC---CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhH
Confidence 45555655442 12357999999999999999999999999999999999996 578999999998764
No 101
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.8e-18 Score=114.25 Aligned_cols=66 Identities=23% Similarity=0.417 Sum_probs=54.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. ..+.+++++||++++|++++|+|||||||||||++|+|+. ++++|+|+++|.++.
T Consensus 3 l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 68 (229)
T cd03254 3 IEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQKGQILIDGIDIR 68 (229)
T ss_pred EEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEeHH
Confidence 44555555441 1246999999999999999999999999999999999996 578999999997754
No 102
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.75 E-value=7.3e-18 Score=113.19 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=55.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. ...+.+++++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 3 l~~~~l~~~~~---~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYP---NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcC---CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhH
Confidence 44555555441 12256999999999999999999999999999999999996 578999999998753
No 103
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.75 E-value=7.3e-18 Score=112.06 Aligned_cols=53 Identities=36% Similarity=0.476 Sum_probs=49.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~ 62 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKET 62 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEc
Confidence 357999999999999999999999999999999999996 57899999999874
No 104
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.75 E-value=1.1e-17 Score=111.82 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=54.1
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++++.| +.+.+++++||+|++|++++|+|+||||||||+++|+|+. ++++|+|.++|.++.
T Consensus 2 ~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (201)
T cd03231 2 EADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLD 65 (201)
T ss_pred EEEEEEEEe-----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecc
Confidence 345555544 2357999999999999999999999999999999999996 578999999997753
No 105
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.75 E-value=4.1e-18 Score=120.24 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 58 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVV 58 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 467999999999999999999999999999999999997 578999999998764
No 106
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.75 E-value=1.1e-17 Score=115.85 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=56.7
Q ss_pred eeEEEEEEEEEeCC----CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEP----SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|.... .+.+.+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcc
Confidence 45556655553110 12467999999999999999999999999999999999997 578999999998764
No 107
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=116.43 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=49.5
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 72 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTR 72 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEhH
Confidence 357999999999999999999999999999999999996 578999999998753
No 108
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.75 E-value=1.1e-17 Score=114.42 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=54.0
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCC-----cceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEK-----EEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~-----~G~i~~~~~~~~ 73 (76)
+++++.++| +...+++++||+|++||+++|+|+||||||||+++|+|+. +|+ +|+|.++|+++.
T Consensus 3 ~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 3 EIENLNLFY-----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-DLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEEE-----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceEEEECCEEcc
Confidence 445555544 2356999999999999999999999999999999999997 455 999999998764
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.75 E-value=9.1e-18 Score=116.05 Aligned_cols=54 Identities=41% Similarity=0.603 Sum_probs=49.7
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|.++.
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i~~~g~~~~ 67 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEVRLNGRPLA 67 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcc
Confidence 357999999999999999999999999999999999996 578999999998754
No 110
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.75 E-value=8.3e-18 Score=114.13 Aligned_cols=53 Identities=28% Similarity=0.440 Sum_probs=49.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 67 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVLVDGHDLA 67 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCeehH
Confidence 56999999999999999999999999999999999997 578999999998753
No 111
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.75 E-value=1.1e-17 Score=113.88 Aligned_cols=53 Identities=30% Similarity=0.458 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+|||||||||||++|+|++ +|++|+|.++|.++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-RPDEGSVLFGGTDLT 67 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCeecC
Confidence 57999999999999999999999999999999999996 578999999998764
No 112
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.4e-17 Score=116.25 Aligned_cols=66 Identities=27% Similarity=0.360 Sum_probs=55.3
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. ....+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 5 l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 44555555441 1356999999999999999999999999999999999997 578999999998764
No 113
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=9.8e-18 Score=109.65 Aligned_cols=53 Identities=36% Similarity=0.484 Sum_probs=49.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++++|++++|++++|+||||||||||+++|+|+. ++++|+++++|.++.
T Consensus 15 ~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~~~g~~~~ 67 (171)
T cd03228 15 KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIDGVDLR 67 (171)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhh
Confidence 36999999999999999999999999999999999997 578999999998764
No 114
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.2e-17 Score=113.09 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=54.4
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.++|. .....++++++|++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 2 ~~~~l~~~~~---~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 67 (234)
T cd03251 2 EFKNVTFRYP---GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRILIDGHDVR 67 (234)
T ss_pred EEEEEEEEeC---CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCCCEEEECCEEhh
Confidence 3455555442 12236999999999999999999999999999999999997 578999999998754
No 115
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-17 Score=119.57 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=55.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|.........+|+++||+|++|++++|+|+||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~I~i~g~~~~ 91 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGTIQVGDIYIG 91 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCEEcc
Confidence 3445555544211111246999999999999999999999999999999999997 578999999997653
No 116
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.75 E-value=1.7e-17 Score=111.89 Aligned_cols=53 Identities=28% Similarity=0.391 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++|++++|+|||||||||||++|+|+. +|++|+|.++|.+++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWT 65 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecc
Confidence 57999999999999999999999999999999999996 578999999997654
No 117
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-17 Score=115.96 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=49.7
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+|||||||||||++|+|++++ |++|+|.++|.++.
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 36799999999999999999999999999999999999643 57999999998763
No 118
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=1.1e-17 Score=110.40 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=48.1
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 65 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVT 65 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECC
Confidence 899999999999999999999999999999999996 578999999998764
No 119
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.74 E-value=5.9e-18 Score=120.24 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=56.6
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++++++++| +.+.+++++||+|++||+++++|||||||||+||+|.+|. .|++|+|+++|++++.
T Consensus 3 ~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~ 67 (309)
T COG1125 3 EFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISD 67 (309)
T ss_pred eeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeeccc
Confidence 445555544 4678999999999999999999999999999999999997 5789999999998764
No 120
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=115.90 Aligned_cols=64 Identities=27% Similarity=0.420 Sum_probs=53.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
++++++.++| +.+.+++++||+|.+|++++|+||||||||||+++|+|+. +|++|+|.+++.++
T Consensus 13 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~ 76 (257)
T PRK11247 13 LLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGELLAGTAPL 76 (257)
T ss_pred EEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEH
Confidence 4445555544 2357999999999999999999999999999999999996 57899999988764
No 121
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.6e-18 Score=114.97 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=54.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
++++++.+.| +...+++++||+|++|++++|+||||||||||+++|+|+.++ +++|+|.++|.++.
T Consensus 4 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 4 IEIRDLKVSF-----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred EEEEeeEEEE-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 4445554443 235799999999999999999999999999999999999753 36999999998764
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=111.83 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=52.9
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++.+.+.| +.+.+++++||++++| +++|+||||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 2 ~~~~~~~~~-----~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 64 (211)
T cd03264 2 QLENLTKRY-----GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIRIDGQDVL 64 (211)
T ss_pred EEEEEEEEE-----CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCCccc
Confidence 344555544 2357999999999999 99999999999999999999996 578999999997654
No 123
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.74 E-value=1.3e-17 Score=114.92 Aligned_cols=51 Identities=29% Similarity=0.422 Sum_probs=48.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+.+++++||++++|++++|+||||||||||+++|+|++ +|++|+|+++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~ 69 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRD 69 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCcc
Confidence 57999999999999999999999999999999999996 5789999999986
No 124
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.74 E-value=1.6e-17 Score=111.95 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=55.4
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++.+.|.. ..+...+++++||++++|++++|+||||||||||+++|+|++ ++++|+|+++|.++.
T Consensus 3 ~~~~l~~~~~~-~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 3 SIRNLNHYYGH-GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEccC-CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEhH
Confidence 44555554421 112367999999999999999999999999999999999996 578999999998764
No 125
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=6.4e-18 Score=117.36 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=55.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+++++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 2 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRY-----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEc-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEEEECCEEcc
Confidence 4455555544 2356999999999999999999999999999999999997 578999999998763
No 126
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.7e-18 Score=116.35 Aligned_cols=53 Identities=28% Similarity=0.391 Sum_probs=49.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||+|++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~ 74 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKSGEIFYNNQAIT 74 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 45999999999999999999999999999999999996 578999999998764
No 127
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=116.30 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=55.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. +...+++++||+|++|++++|+|||||||||||++|+|+. ++++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEECC
Confidence 34455555442 2346999999999999999999999999999999999996 578999999998764
No 128
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.74 E-value=1.2e-17 Score=113.49 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=49.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 68 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIR 68 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehh
Confidence 56999999999999999999999999999999999996 578999999997753
No 129
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.6e-17 Score=115.29 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++.+||+++|+|||||||||||++|+|+..+ +++|+|.++|.++.
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 46799999999999999999999999999999999999753 57999999998764
No 130
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1e-17 Score=121.35 Aligned_cols=54 Identities=24% Similarity=0.535 Sum_probs=50.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++++||+++|+|||||||||||++|+|++ +|++|+|+++|.++.
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~ 71 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVT 71 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECC
Confidence 467999999999999999999999999999999999997 578999999998764
No 131
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.74 E-value=1.3e-17 Score=113.30 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=50.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+.+++++++||+|++|++++|+||||||||||+++|+|+. +|++|+|+++|+++
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~ 86 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTVTVRGRVS 86 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEc
Confidence 4578999999999999999999999999999999999996 57899999999764
No 132
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=2e-17 Score=109.97 Aligned_cols=69 Identities=28% Similarity=0.393 Sum_probs=55.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEECCEec
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKKKKEK 72 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~G~i~~~~~~~ 72 (76)
++++.+.+.|... ...+.+++++||++++|++++|+|||||||||||++|+|+.. ++++|++.++|+++
T Consensus 4 l~~~~l~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 4 LTWKNLNYTVPVK-GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEeeeEEEecCC-CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 3455555554311 113579999999999999999999999999999999999853 46899999999875
No 133
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.74 E-value=1.5e-17 Score=108.93 Aligned_cols=53 Identities=32% Similarity=0.466 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++++|++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~ 67 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDGADIS 67 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEEcc
Confidence 46999999999999999999999999999999999996 578999999998764
No 134
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.6e-17 Score=118.96 Aligned_cols=70 Identities=26% Similarity=0.284 Sum_probs=58.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN---EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~---~~~G~i~~~~~~~~ 73 (76)
++++++.+.|... .+...+++||||+|++||+++|+|+||||||||+++|+|++.+ +++|+|+++|+++.
T Consensus 4 L~v~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 4 LNVDKLSVHFGDE-SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQ 76 (326)
T ss_pred EEEeCeEEEECCC-CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECC
Confidence 5667777766422 1235799999999999999999999999999999999999753 37899999998864
No 135
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.74 E-value=2.1e-17 Score=113.78 Aligned_cols=65 Identities=28% Similarity=0.350 Sum_probs=54.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.| +.+.++++++|+|++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 6 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~ 70 (257)
T PRK10619 6 LNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGSIVVNGQTIN 70 (257)
T ss_pred EEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcc
Confidence 3445554443 2367999999999999999999999999999999999996 578999999998763
No 136
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.74 E-value=1.7e-17 Score=122.29 Aligned_cols=65 Identities=29% Similarity=0.439 Sum_probs=55.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.| +.+.+++++||++++||+++|+||||||||||||+|+|++ +|.+|+|+++|+++.
T Consensus 4 L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll-~p~sG~I~l~G~~i~ 68 (402)
T PRK09536 4 IDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL-TPTAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEEcC
Confidence 4445555543 3478999999999999999999999999999999999997 578999999998765
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=116.47 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++||+++|+|+||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 69 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPIT 69 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 46999999999999999999999999999999999996 578999999998764
No 138
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.9e-17 Score=115.44 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=55.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. +...+++++||+|++||+++|+||||||||||+++|+|+. ++.+|+|+++|.++.
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEECc
Confidence 34556655542 2346999999999999999999999999999999999996 578999999998863
No 139
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.5e-17 Score=112.67 Aligned_cols=53 Identities=30% Similarity=0.458 Sum_probs=49.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++++++|+|++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~ 66 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIR 66 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhh
Confidence 46999999999999999999999999999999999996 578999999998764
No 140
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=9.7e-18 Score=117.73 Aligned_cols=57 Identities=33% Similarity=0.406 Sum_probs=52.7
Q ss_pred CCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 16 PSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 16 ~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+.+.++++++|+|++||+++|+||||||||||||+|.|++ +|++|+|+++|.++.
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~GeI~i~G~~i~ 73 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKGEILIDGEDIP 73 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCCeEEEcCcchh
Confidence 347799999999999999999999999999999999999997 578999999998765
No 141
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=113.43 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=54.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+++++||++++|++++|+|||||||||||++|+|+.. + +++|+|.++|+++.
T Consensus 7 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 7 MEARGLSFFY-----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred EEEeeeEEEE-----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 4455555544 23579999999999999999999999999999999999953 2 47999999998764
No 142
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.6e-17 Score=113.66 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=55.0
Q ss_pred ceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 2 SLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.++++++.+.| +.+.+++++||+|++|++++|+||||||||||+++|+|+.++ +++|+|+++|.++.
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFY-----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred eEEEeccEEEE-----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence 35555555544 236799999999999999999999999999999999999753 35899999998763
No 143
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=2.2e-17 Score=115.60 Aligned_cols=65 Identities=28% Similarity=0.398 Sum_probs=55.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCC--------cceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEK--------EEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~--------~G~i~~~~~~~~ 73 (76)
+++++++++| +.+.+++++||+|++|++++|+|||||||||||++|+|++ +++ +|+|.++|.++.
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCcccccccCCceEEEECCEEcc
Confidence 4556665554 2357999999999999999999999999999999999997 455 899999998764
No 144
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=114.02 Aligned_cols=55 Identities=29% Similarity=0.438 Sum_probs=49.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|++++|+|||||||||||++|+|+..+ +++|+|.++|.++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 35799999999999999999999999999999999999743 37899999998764
No 145
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.7e-17 Score=111.77 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=49.7
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|++ ++++|+|.++|+++.
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~i~ 76 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQIQIDGKTAT 76 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCeeEEECCEEcc
Confidence 457999999999999999999999999999999999996 578999999998764
No 146
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.8e-17 Score=114.23 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=49.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+|+||||||||+++|+|+.++ +++|+|.++|+++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 46799999999999999999999999999999999999753 37999999998763
No 147
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.74 E-value=1.6e-17 Score=113.85 Aligned_cols=63 Identities=25% Similarity=0.305 Sum_probs=52.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
++++++.+.| +...+++++||+|++|++++|+||||||||||+++|+|+. ++++|+|.++|.+
T Consensus 4 l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~ 66 (253)
T TIGR02323 4 LQVSGLSKSY-----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRS 66 (253)
T ss_pred EEEeeeEEEe-----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEeccc
Confidence 3444554444 2356899999999999999999999999999999999996 5789999998865
No 148
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.74 E-value=1.7e-17 Score=113.14 Aligned_cols=66 Identities=32% Similarity=0.456 Sum_probs=54.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~G~i~~~~~~~~ 73 (76)
++++++.+.| +.+.+++++||+|++|++++|+||||||||||+++|+|+.. ++++|+|.++|.++.
T Consensus 2 i~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSV-----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEe-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 3455555544 23579999999999999999999999999999999999952 578999999997653
No 149
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.6e-17 Score=112.68 Aligned_cols=55 Identities=29% Similarity=0.440 Sum_probs=49.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++||+++|+|+||||||||+++|+|+.++ +++|+|+++|+++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence 36799999999999999999999999999999999999742 46999999998763
No 150
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.74 E-value=2.5e-17 Score=110.11 Aligned_cols=65 Identities=32% Similarity=0.412 Sum_probs=54.4
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE-KNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~-~~~~~G~i~~~~~~~~ 73 (76)
.++++.+.|. ...+++++||++.+|++++|+|+||||||||+++|+|+. .+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 2 EIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred eEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 3455555441 357999999999999999999999999999999999995 2578999999998764
No 151
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2e-17 Score=114.97 Aligned_cols=54 Identities=31% Similarity=0.431 Sum_probs=50.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~ 74 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQSGEIKIDGITIS 74 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEecC
Confidence 457999999999999999999999999999999999996 578999999998764
No 152
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.73 E-value=2.4e-17 Score=118.43 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=58.2
Q ss_pred eeEEEEEEEEEeCC--------CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEP--------SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~--------~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.+++.+.|.... .+...+++++||+|++||+++|+|+||||||||+++|+|++ ++++|+|+++|.++.
T Consensus 9 l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KATDGEVAWLGKDLL 86 (331)
T ss_pred EEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCcEEEECCEECC
Confidence 45667777764311 12367999999999999999999999999999999999997 578999999998874
No 153
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.5e-17 Score=114.21 Aligned_cols=68 Identities=25% Similarity=0.295 Sum_probs=55.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|. ......+++++||+|++|++++|+|+||||||||+++|+|+. ++.+|+|+++|+++.
T Consensus 5 l~~~~l~~~~~--~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~ 72 (277)
T PRK13642 5 LEVENLVFKYE--KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKVKIDGELLT 72 (277)
T ss_pred EEEEEEEEEcC--CCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEECC
Confidence 44555555542 112346999999999999999999999999999999999997 578999999998764
No 154
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.4e-17 Score=115.52 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=54.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
++++++.++|. +.+.+++++||+|++||+++|+||||||||||+++|+|+. +|++|+|+++|.++
T Consensus 6 l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~G~i~i~g~~~ 70 (283)
T PRK13636 6 LKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSSGRILFDGKPI 70 (283)
T ss_pred EEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCEEC
Confidence 34455555442 2357999999999999999999999999999999999996 57899999999876
No 155
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.73 E-value=1.8e-17 Score=121.05 Aligned_cols=54 Identities=26% Similarity=0.540 Sum_probs=50.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|++++|+|||||||||||++|+|++ ++++|+|+++|+++.
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDIT 79 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 467999999999999999999999999999999999997 578999999998864
No 156
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.2e-17 Score=117.54 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=57.9
Q ss_pred eeEEEEEEEEEeCCC-----CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPS-----PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~-----~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|..... +...++++|||+|++||+++|+|+||||||||+++|+|++ ++.+|+|+++|.++.
T Consensus 6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-TPTGGELYYQGQDLL 80 (327)
T ss_pred EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCcEEEECCEEcC
Confidence 456677776642110 1357999999999999999999999999999999999997 568999999998864
No 157
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.73 E-value=2e-17 Score=113.86 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=53.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE----KEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~----~~G~i~~~~~~~~ 73 (76)
++++++.++| .+.+++++||++.+|++++|+||||||||||+++|+|+.+ + ++|+|+++|++++
T Consensus 5 l~~~~l~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 5 IELRNIALQA------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred EEEeCeEEEe------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeecc
Confidence 4445555544 2469999999999999999999999999999999999974 5 8999999998763
No 158
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=2e-17 Score=110.32 Aligned_cols=49 Identities=35% Similarity=0.448 Sum_probs=46.1
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
..+++++||+|++|++++|+||||||||||+++|+|+. ++++|+|.++|
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g 66 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPG 66 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcC
Confidence 36999999999999999999999999999999999996 57899999987
No 159
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.73 E-value=1.4e-17 Score=113.66 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=49.8
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+.+++++++||++++|++++|+|||||||||||++|+|++ +|++|+|.++|.++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~ 85 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGEVRVAGLVP 85 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEc
Confidence 4568999999999999999999999999999999999996 57899999998764
No 160
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.8e-17 Score=114.38 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=49.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~~ 73 (76)
...+++++||+|++|++++|+||||||||||+++|+|+.. | |++|+|.++|+++.
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3579999999999999999999999999999999999974 2 47899999998763
No 161
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.4e-17 Score=114.47 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|+.+| +++|+|.++|.++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 46799999999999999999999999999999999999754 47999999998763
No 162
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.3e-18 Score=122.43 Aligned_cols=64 Identities=38% Similarity=0.563 Sum_probs=54.9
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
|++..++++..| +...+++||+++|+.||+++|+||||||||||||+|+||+ .|++|.|.++|+
T Consensus 1 m~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~ 64 (345)
T COG1118 1 MSIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGR 64 (345)
T ss_pred Cceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCE
Confidence 555555554443 4567899999999999999999999999999999999997 578999999999
No 163
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=3.5e-17 Score=108.76 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=52.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++.+.++|. .+.+++ +||++++|++++|+|+||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccC
Confidence 45566655551 234555 99999999999999999999999999999996 578999999997653
No 164
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.1e-17 Score=111.57 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=49.2
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE----KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~----~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|++.+. ++|+|.++|.++.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 467999999999999999999999999999999999997532 3799999998764
No 165
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.4e-17 Score=112.26 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=54.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+++++||+|++|++++|+||||||||||+++|+|++. + +++|+|+++|+++.
T Consensus 5 l~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 5 VKLEQLNVHF-----GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred EEEEEEEEEe-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence 3445555544 23579999999999999999999999999999999999964 2 25899999998764
No 166
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.73 E-value=3.4e-17 Score=117.50 Aligned_cols=70 Identities=26% Similarity=0.254 Sum_probs=57.3
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE--KEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~--~~G~i~~~~~~~~ 73 (76)
++++++.+.|... .+...++++|||+|++||+++|+|+||||||||+++|+|++.+. .+|+|+++|.++.
T Consensus 13 L~i~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 13 LDVKDLRVTFSTP-DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL 84 (330)
T ss_pred EEEeCeEEEEecC-CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC
Confidence 4556666666432 23467999999999999999999999999999999999997432 3899999998874
No 167
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.73 E-value=3.4e-17 Score=113.00 Aligned_cols=55 Identities=31% Similarity=0.479 Sum_probs=48.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE--KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~--~~G~i~~~~~~~~ 73 (76)
...+++++||++.+|++++|+||||||||||+++|+|+..|. .+|+|+++|.++.
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence 467999999999999999999999999999999999997532 2599999998764
No 168
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=6.5e-18 Score=119.51 Aligned_cols=68 Identities=26% Similarity=0.390 Sum_probs=60.5
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
|.++.+.++++| +...+++|+||++++|++.+++|||||||||.+|+|.|++ ++++|.|.|+|.+++.
T Consensus 1 ~~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I~~~g~~~~~ 68 (300)
T COG4152 1 MALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEITWNGGPLSQ 68 (300)
T ss_pred CceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceEEEcCcchhh
Confidence 567777776665 5688999999999999999999999999999999999997 5789999999988774
No 169
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.73 E-value=4.5e-17 Score=104.62 Aligned_cols=50 Identities=32% Similarity=0.441 Sum_probs=46.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..+++++||++++||+++|+||||||||||+++|+|+. ++++|+|+++++
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~ 62 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGST 62 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCe
Confidence 46999999999999999999999999999999999996 578999999874
No 170
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.6e-17 Score=122.52 Aligned_cols=66 Identities=35% Similarity=0.443 Sum_probs=54.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+++++||++++|++++|+||||||||||+|+|+|+.++ +++|+|+++|.++.
T Consensus 6 l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 3444544443 236799999999999999999999999999999999999754 47999999998764
No 171
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.6e-17 Score=115.47 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=50.4
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+...+++++||++++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~ 89 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIA 89 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcc
Confidence 4567999999999999999999999999999999999997 578999999998764
No 172
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.73 E-value=3.5e-17 Score=110.26 Aligned_cols=65 Identities=32% Similarity=0.324 Sum_probs=52.8
Q ss_pred eeEEEEEEEEEeCC-CC-CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 3 LQTHVTMVTFFNEP-SP-AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 3 ~~~~~~~~~~~~~~-~~-~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
++++++.+.|.... .+ ...+++++||+|++|++++|+||||||||||+++|+|++ ++++|+|+++
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~ 68 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-LPDSGRILVR 68 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEEe
Confidence 45566666653211 11 257999999999999999999999999999999999997 5789999997
No 173
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.6e-17 Score=112.67 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=49.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-C---CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-E---KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~---~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|++.+ | ++|+|+++|+++.
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 35799999999999999999999999999999999999742 3 5899999998764
No 174
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.9e-17 Score=111.92 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=49.5
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+.++ +++|+|+++|.++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 36799999999999999999999999999999999999643 27899999998764
No 175
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.73 E-value=2.7e-17 Score=110.98 Aligned_cols=53 Identities=26% Similarity=0.480 Sum_probs=48.9
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 79 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPIS 79 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchH
Confidence 46999999999999999999999999999999999996 578999999997653
No 176
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=3.7e-17 Score=111.12 Aligned_cols=64 Identities=30% Similarity=0.450 Sum_probs=54.4
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++.++++| +.+.++++++|++++|++++|+||||||||||+++|+|+. ++..|+|+++|+++.
T Consensus 2 ~~~~l~~~~-----~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-~~~~G~i~~~g~~~~ 65 (232)
T cd03300 2 ELENVSKFY-----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-TPTSGEILLDGKDIT 65 (232)
T ss_pred EEEeEEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcC
Confidence 345555544 2357999999999999999999999999999999999997 578999999998764
No 177
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=4.6e-17 Score=113.79 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=56.0
Q ss_pred eeEEEEEEEEEeCC-CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEP-SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|.... ...+.+++++||+|++|++++|+||||||||||+++|+|++ ++++|+|+++|.++.
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-IPSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecc
Confidence 34455555543111 01357999999999999999999999999999999999997 578999999998764
No 178
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=113.47 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=48.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
..+++++||+|++|++++|+||||||||||+++|+|++.+ +++|+|+++|+++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 5699999999999999999999999999999999999753 25899999998753
No 179
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=3.7e-17 Score=109.20 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=54.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|- .....+++++||++++|++++|+||||||||||+++|+|+. ++.+|+|.++|.++.
T Consensus 7 l~~~~l~~~~~---~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 73 (207)
T cd03369 7 IEVENLSVRYA---PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDGIDIS 73 (207)
T ss_pred EEEEEEEEEeC---CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEhH
Confidence 34445545442 11246999999999999999999999999999999999996 578999999998753
No 180
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.9e-17 Score=111.23 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=54.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~~ 73 (76)
+.++++.+.| +.+.+++++||+|++|++++|+||||||||||+++|+|+.. + +++|+|+++|.++.
T Consensus 4 l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 4 IEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred EEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence 4555555543 23679999999999999999999999999999999999853 2 37899999998764
No 181
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4.8e-17 Score=118.80 Aligned_cols=54 Identities=30% Similarity=0.469 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|++++|+|||||||||||++|+|++ ++++|+|+++|++++
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQIMLDGVDLS 84 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 357999999999999999999999999999999999997 578999999998764
No 182
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.72 E-value=4.8e-17 Score=118.32 Aligned_cols=65 Identities=29% Similarity=0.481 Sum_probs=55.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc--ceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKE--EEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~--G~i~~~~~~~~ 73 (76)
++++.+.++| +...+++++||+|++|++++|+|||||||||||++|+|++ +|++ |+|+++|.++.
T Consensus 6 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 6 IRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLT 72 (362)
T ss_pred EEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCEEEEECCEECC
Confidence 4455555554 2357999999999999999999999999999999999997 5789 99999998764
No 183
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.72 E-value=3.7e-17 Score=121.60 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=49.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++.+|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~ 69 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDAGSILYLGKEVT 69 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC
Confidence 367999999999999999999999999999999999997 578999999998764
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.3e-17 Score=112.91 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=49.2
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|++++|+||||||||||+++|+|+.. + +++|+|+++|+++.
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 3579999999999999999999999999999999999853 2 57999999998764
No 185
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.72 E-value=6e-17 Score=110.52 Aligned_cols=53 Identities=34% Similarity=0.546 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++.+|++++|+||||||||||+++|+|+. ++.+|+|.++|.++.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDAT 65 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcC
Confidence 57999999999999999999999999999999999996 578999999998764
No 186
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.72 E-value=4.5e-17 Score=112.41 Aligned_cols=53 Identities=25% Similarity=0.269 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+|+||||||||+++|+|+. ++.+|+|+++|.++.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~ 86 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDIS 86 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhh
Confidence 56999999999999999999999999999999999996 578999999998764
No 187
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.5e-17 Score=113.98 Aligned_cols=54 Identities=30% Similarity=0.429 Sum_probs=49.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~ 72 (76)
...+|++++|+|++|++++|+|||||||||||++|+|++.+ +++|+|+++|.++
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 36799999999999999999999999999999999999753 5799999999876
No 188
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.72 E-value=4.7e-17 Score=108.51 Aligned_cols=71 Identities=39% Similarity=0.562 Sum_probs=56.6
Q ss_pred eeEEEEEEEEEeCC-CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEP-SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~G~i~~~~~~~~ 73 (76)
++++.+++.|.... .....+++++||++++|++++|+||||||||||+++|+|+.. ++.+|+|.++|+++.
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc
Confidence 45566666553210 013579999999999999999999999999999999999961 478999999998764
No 189
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.72 E-value=1.7e-17 Score=103.81 Aligned_cols=51 Identities=35% Similarity=0.548 Sum_probs=47.5
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
|++++|++++|++++|+|+||||||||+++|+|+.+ +.+|.|.+++.++..
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISD 51 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccccccccc
Confidence 689999999999999999999999999999999974 689999999988764
No 190
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.8e-17 Score=113.70 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|+..+ +++|+|+++|.++.
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 35799999999999999999999999999999999999753 47999999998764
No 191
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.5e-17 Score=112.87 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=48.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~ 72 (76)
...+++++||+|++|++++|+||||||||||+++|+|+..+ +++|+|+++|.++
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 79 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL 79 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEc
Confidence 35799999999999999999999999999999999999642 3689999999876
No 192
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.9e-17 Score=113.18 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=48.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~ 72 (76)
..+++++||+|++|++++|+|+||||||||+++|+|+.+ + +++|+|.++|.++
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 93 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEc
Confidence 569999999999999999999999999999999999974 2 5899999999876
No 193
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3e-17 Score=112.27 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=53.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-C---CcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-E---KEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~---~~G~i~~~~~~~~ 73 (76)
+.++++.+.| +...+++++||+|++||+++|+||||||||||+++|+|+.++ | ++|+|+++|.++.
T Consensus 4 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 4 ISVKDLDLFY-----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred EEEEEEEEEE-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3445555544 235799999999999999999999999999999999998642 2 5899999998764
No 194
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.3e-17 Score=111.86 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=48.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-C---CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-E---KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~---~~G~i~~~~~~~~ 73 (76)
.+.+|+++||++++|++++|+||||||||||+++|+|+..+ | ++|+|.++|+++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 46799999999999999999999999999999999999642 2 4899999998764
No 195
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.6e-17 Score=121.80 Aligned_cols=54 Identities=33% Similarity=0.463 Sum_probs=49.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||||+|+|+. +|++|+|+++|.++.
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~ 70 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGTITINNINYN 70 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-CCCccEEEECCEECC
Confidence 467999999999999999999999999999999999996 578999999998764
No 196
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=7.2e-17 Score=110.38 Aligned_cols=54 Identities=35% Similarity=0.467 Sum_probs=48.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CC---CcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NE---KEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~---~~G~i~~~~~~~ 72 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+.. +| ++|+|.++|+++
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 3579999999999999999999999999999999999853 23 489999999876
No 197
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.72 E-value=6e-17 Score=120.96 Aligned_cols=54 Identities=30% Similarity=0.449 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+|||||||||||++|+|+. +|++|+|.++|.++.
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 76 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTLEIGGNPCA 76 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 357999999999999999999999999999999999996 578999999998764
No 198
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.71 E-value=6.3e-17 Score=112.49 Aligned_cols=54 Identities=31% Similarity=0.487 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|+. ++++|+|.++|.++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNVSWRGEPLA 77 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecc
Confidence 367999999999999999999999999999999999996 578999999998653
No 199
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.8e-17 Score=111.79 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=50.4
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
+...+++++||++++|++++|+|+||||||||+++|+|++.| +++|+|+++|+++.
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 346799999999999999999999999999999999999754 36999999998764
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.71 E-value=6e-17 Score=120.21 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=54.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+++++||++++|++++|+||||||||||+++|+|+.++ +++|+|+++|+++.
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 3445555544 236799999999999999999999999999999999999743 37999999998764
No 201
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.71 E-value=5.3e-17 Score=111.02 Aligned_cols=55 Identities=35% Similarity=0.457 Sum_probs=49.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE-KNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~-~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+|+||||||||+++|+|+. .++++|+|+++|.++.
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL 74 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence 357999999999999999999999999999999999983 2468999999998764
No 202
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=6.9e-17 Score=113.12 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=48.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKE---EEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~---G~i~~~~~~~~ 73 (76)
+.+++++||+|++|++++|+||||||||||+++|+|++. |++ |+|+++|.++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLT 75 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECC
Confidence 469999999999999999999999999999999999974 555 99999998874
No 203
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.71 E-value=5.2e-17 Score=109.24 Aligned_cols=52 Identities=33% Similarity=0.427 Sum_probs=48.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
.++++++||++++|++++|+|||||||||||++|+|+. ++++|+|+++|.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~ 65 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNE 65 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCccc
Confidence 57999999999999999999999999999999999997 57899999998765
No 204
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.71 E-value=5.8e-17 Score=105.96 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=46.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+.++++++|++++|++++|+||||||||||+++|+|++ ++++|+|++++
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~ 62 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIGMPE 62 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECC
Confidence 56999999999999999999999999999999999996 57899999976
No 205
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.71 E-value=3.3e-17 Score=119.37 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+.+++++||+|++||+++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~ 58 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIM 58 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 4567999999999999999999999999999999999997 578999999998875
No 206
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.71 E-value=3.8e-17 Score=121.70 Aligned_cols=53 Identities=36% Similarity=0.487 Sum_probs=49.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+|+|+||++++|+.++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVS 400 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhh
Confidence 46999999999999999999999999999999999996 578999999998875
No 207
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.7e-17 Score=110.13 Aligned_cols=54 Identities=24% Similarity=0.392 Sum_probs=48.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CC---CcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NE---KEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~---~~G~i~~~~~~~ 72 (76)
.+.+++++||++.+|++++|+||||||||||+++|+|+.. .+ ++|+|+++|+++
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 74 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI 74 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEc
Confidence 3679999999999999999999999999999999999853 13 489999999876
No 208
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.71 E-value=7e-17 Score=111.74 Aligned_cols=50 Identities=34% Similarity=0.597 Sum_probs=46.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|.+++
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~~ 65 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVIKRNG 65 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECC
Confidence 357999999999999999999999999999999999997 57899999876
No 209
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.71 E-value=4.4e-17 Score=110.21 Aligned_cols=55 Identities=33% Similarity=0.473 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN--EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~--~~~G~i~~~~~~~~ 73 (76)
.+++++++||++++|++++|+||||||||||+++|+|+.++ +++|+|+++|.++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~ 75 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC
Confidence 46899999999999999999999999999999999999741 68999999998753
No 210
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.4e-17 Score=112.73 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=49.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~~ 73 (76)
...++++++|+|++|++++|+|||||||||||++|+|+.. | +++|+|.++|+++.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 3579999999999999999999999999999999999853 3 48999999998753
No 211
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.1e-17 Score=110.82 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=49.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC--C--CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN--E--KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~--~--~~G~i~~~~~~~~ 73 (76)
...+++++||++++|++++|+|+||||||||+++|+|+.++ + ++|+|.++|+++.
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence 35799999999999999999999999999999999999743 2 4899999998764
No 212
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.4e-17 Score=110.29 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=49.2
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--C--CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--N--EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~--~~~G~i~~~~~~~~ 73 (76)
...+++++||+|.+|++++|+||||||||||+++|+|+.. + +++|+|+++|+++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 3679999999999999999999999999999999999964 2 36999999998763
No 213
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.1e-16 Score=107.10 Aligned_cols=48 Identities=38% Similarity=0.630 Sum_probs=45.1
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~ 63 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVT 63 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcC
Confidence 999999999999999999999999999999996 578999999998764
No 214
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=109.61 Aligned_cols=53 Identities=28% Similarity=0.458 Sum_probs=48.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCC-----cceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEK-----EEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~-----~G~i~~~~~~~~ 73 (76)
+.+++++||+|++|++++|+||||||||||+++|+|+++ ++ +|+|+++|.++.
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 579999999999999999999999999999999999974 44 699999998764
No 215
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=109.26 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=48.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--cCC--CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE--KNE--KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~--~~~--~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+. .++ ++|+|.++|+++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 367999999999999999999999999999999999972 233 4899999998764
No 216
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.70 E-value=1.3e-16 Score=111.41 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=48.0
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
....+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-~p~~G~I~~~g~ 86 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGE 86 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCE
Confidence 4567999999999999999999999999999999999996 578999999885
No 217
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.4e-16 Score=110.28 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=48.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-C---CcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-E---KEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~---~~G~i~~~~~~~ 72 (76)
.+.+++++||+|++||+++|+|+||||||||+++|+|+..+ + ++|+|.++|.++
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 35799999999999999999999999999999999999753 2 689999988654
No 218
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=112.39 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+|+++||+|.+|++++|+|||||||||||++|+|+..+ +++|+|+++|.++.
T Consensus 57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 36799999999999999999999999999999999999742 57999999998764
No 219
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.70 E-value=6.1e-17 Score=119.92 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=53.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+++++++++| +...+++++||++++|++++|+||||||||||||+|+|+. +|++|+|.+++.++
T Consensus 4 l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~ 67 (490)
T PRK10938 4 LQISQGTFRL-----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGERQSQFSHI 67 (490)
T ss_pred EEEEeEEEEc-----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceEEECCccc
Confidence 4555555544 2356999999999999999999999999999999999996 57899999987654
No 220
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.70 E-value=1.2e-16 Score=107.20 Aligned_cols=51 Identities=35% Similarity=0.558 Sum_probs=46.9
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.++||++++|++++|+||||||||||+++|+|+. ++++|+|+++|.++.
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHT 63 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcc
Confidence 457999999999999999999999999999999996 578999999998764
No 221
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=1.3e-16 Score=119.35 Aligned_cols=70 Identities=24% Similarity=0.240 Sum_probs=55.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
++++++.++|.. ....+.+++++||++.+||+++|+||||||||||+++|+|++++ +++|+|+++|.++.
T Consensus 6 l~~~~l~~~~~~-~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 6 LAIENLSVAFRQ-QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred EEEeceEEEecC-CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 344555555421 11135799999999999999999999999999999999999754 26899999998763
No 222
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.9e-16 Score=107.89 Aligned_cols=51 Identities=35% Similarity=0.511 Sum_probs=48.0
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~ 64 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDIT 64 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcC
Confidence 899999999999999999999999999999999996 578999999998764
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=118.81 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=49.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~ 69 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSILIDGQEMR 69 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECC
Confidence 357999999999999999999999999999999999996 578999999998764
No 224
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.69 E-value=5.7e-17 Score=110.35 Aligned_cols=50 Identities=36% Similarity=0.515 Sum_probs=46.4
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 50 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQIT 50 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECC
Confidence 47899999999999999999999999999999996 578999999998764
No 225
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.69 E-value=1.3e-16 Score=122.25 Aligned_cols=62 Identities=37% Similarity=0.570 Sum_probs=53.6
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++|.+.+ ....+++++||+|++|+.++|+|+||||||||+++|+|+. +|++|+|.++|.+++
T Consensus 457 vsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 457 VTFRYRP-DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLA 518 (686)
T ss_pred EEEEcCC-CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcC
Confidence 4444432 2467999999999999999999999999999999999997 578999999998875
No 226
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.69 E-value=7.7e-17 Score=121.67 Aligned_cols=65 Identities=32% Similarity=0.407 Sum_probs=57.3
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++.+.++| +..++|++|||++.+||+++|+|.||||||||+|+|+|.+ +|++|+|+++|++.+
T Consensus 9 l~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~G~I~~~G~~~~ 73 (500)
T COG1129 9 LELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDSGEILIDGKPVA 73 (500)
T ss_pred eeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCCceEEECCEEcc
Confidence 4455666655 5678999999999999999999999999999999999997 589999999999875
No 227
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.7e-16 Score=109.77 Aligned_cols=52 Identities=29% Similarity=0.455 Sum_probs=47.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCC-----cceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEK-----EEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~-----~G~i~~~~~~~ 72 (76)
..+++++||++++|++++|+|+|||||||||++|+|+.+ ++ .|+|.++|+++
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNI 76 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEh
Confidence 479999999999999999999999999999999999974 43 79999999875
No 228
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.8e-16 Score=110.67 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=49.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++||+++|+||||||||||+++|+|+..+ +++|+|.++|+++.
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 45799999999999999999999999999999999999643 25899999998763
No 229
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=5.3e-17 Score=110.21 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=46.9
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE----KEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~----~~G~i~~~~~~~~ 73 (76)
+++++||++++|++++|+||||||||||+++|+|+.+ | ++|+|+++|+++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~ 55 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLL 55 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEech
Confidence 4789999999999999999999999999999999974 5 7999999998764
No 230
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.69 E-value=2.7e-17 Score=112.75 Aligned_cols=55 Identities=33% Similarity=0.490 Sum_probs=51.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++++|+||||+|++||++-|+||||||||||||+|++.+. |++|.|+++|.++++
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~ 68 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSR 68 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-CCCceEEECCeeccc
Confidence 3779999999999999999999999999999999999974 789999999998874
No 231
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.6e-16 Score=106.83 Aligned_cols=63 Identities=30% Similarity=0.402 Sum_probs=51.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|. ... .++||++++|++++|+||||||||||+++|+|++ ++++|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-----HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-----Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecC
Confidence 44566666552 112 3899999999999999999999999999999996 578999999998764
No 232
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.2e-16 Score=117.72 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=49.7
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||+|++||+++|+|||||||||||++|+|++ +|++|+|+++|.++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~p~sG~I~i~G~~i~ 93 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-EPTRGQVLIDGVDIA 93 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCEEEECCEECC
Confidence 345899999999999999999999999999999999997 578999999998764
No 233
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.68 E-value=1.2e-16 Score=119.95 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=50.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...++++++|+|++|+.++|+|+||||||||+++|+|+. +|++|+|+++|.+++
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~ 408 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEILLDGHDLR 408 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceEEECCEEhh
Confidence 467999999999999999999999999999999999997 578999999998865
No 234
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.8e-16 Score=120.12 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=49.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-ESQGGEIIFNGQRID 389 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCcEEEECCEECC
Confidence 57999999999999999999999999999999999997 578999999998764
No 235
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=122.03 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=53.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
+.+++++++| +.+.+|+++||+|.+|++++|+||||||||||||+|+|++ +|++|+|++++.
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCC
Confidence 4455666655 3467999999999999999999999999999999999996 578999998764
No 236
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.68 E-value=8e-17 Score=108.95 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=45.2
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-ECCEe
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK-KKKKE 71 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~-~~~~~ 71 (76)
.+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|. +++..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~ 51 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDA 51 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCce
Confidence 3799999999999999999999999999999999996 57899997 76653
No 237
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=117.87 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=50.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 63 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEID 63 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECC
Confidence 367999999999999999999999999999999999996 578999999998764
No 238
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.1e-16 Score=118.26 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=52.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+++++++++| +.+++++++||+|.+|++++|+|||||||||||++|+|+. +|++|+|.+++
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~ 62 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-EPSAGNVSLDP 62 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecC
Confidence 4556665554 2357999999999999999999999999999999999997 57899999875
No 239
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.67 E-value=2.4e-16 Score=120.59 Aligned_cols=62 Identities=19% Similarity=0.356 Sum_probs=52.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
+.++++.++| +.+.+|+++||+|++|++++|+|||||||||||++|+|++ +|++|+|.+++.
T Consensus 4 l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I~~~~~ 65 (635)
T PRK11147 4 ISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRIIYEQD 65 (635)
T ss_pred EEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEeCCC
Confidence 4555555554 2367999999999999999999999999999999999996 578999998763
No 240
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.67 E-value=3.3e-16 Score=117.57 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=49.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++++++||++++|+.++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~ 388 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVT 388 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECC
Confidence 46999999999999999999999999999999999996 578999999999875
No 241
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.67 E-value=2.3e-16 Score=117.48 Aligned_cols=53 Identities=36% Similarity=0.496 Sum_probs=49.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++++||++++|+.++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSIAVNGVPLA 387 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEehh
Confidence 57999999999999999999999999999999999996 578999999998765
No 242
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=2.2e-16 Score=116.95 Aligned_cols=53 Identities=32% Similarity=0.520 Sum_probs=47.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE-KEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~-~~G~i~~~~~~~ 72 (76)
...+++++||++++|++++|+||||||||||+++|+|+. ++ ++|+|+++|+++
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~ 325 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRR 325 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccC
Confidence 357999999999999999999999999999999999985 44 689999998654
No 243
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.7e-16 Score=118.24 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=49.7
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||+|++|++++|+||||||||||+|+|+|+.+|+++|+|+++|++++
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK 328 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence 3569999999999999999999999999999999999974358999999998764
No 244
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-16 Score=109.19 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=52.2
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecccc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEKK 75 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~~ 75 (76)
+.+.++.++||.+.+||++.|.||||||||||||+|+|+. .|++|+|+|++..++..
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~ 69 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNV 69 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccc
Confidence 5678999999999999999999999999999999999997 57899999998877643
No 245
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.67 E-value=3e-16 Score=120.34 Aligned_cols=54 Identities=31% Similarity=0.399 Sum_probs=50.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++++||+|++|+.++|+|+||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIR 530 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhh
Confidence 457999999999999999999999999999999999997 578999999998875
No 246
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.7e-16 Score=119.45 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=53.9
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+.+++.+.|... .+..+++++|||++++|++++|+||||||||||+++|+|++ +|++|.|.++|..+
T Consensus 14 ~v~~l~~~y~~~-~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-~p~~G~i~~~g~~~ 80 (623)
T PRK10261 14 AVENLNIAFMQE-QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-EQAGGLVQCDKMLL 80 (623)
T ss_pred EEeceEEEecCC-CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCeEEEECCEEe
Confidence 444555554321 12457999999999999999999999999999999999997 56899999988643
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.67 E-value=1.9e-16 Score=117.54 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++.+||+++|+|||||||||||++|+|+.+|+++|+|+++|+++.
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVD 326 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECC
Confidence 569999999999999999999999999999999999975447999999998764
No 248
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.67 E-value=2.8e-16 Score=118.77 Aligned_cols=53 Identities=30% Similarity=0.447 Sum_probs=49.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+|+++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIA 405 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhh
Confidence 57999999999999999999999999999999999996 578999999998865
No 249
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.67 E-value=4.3e-17 Score=112.81 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=49.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.++++||||+++.|++++|+|||||||||+||+|+.++ .|++|.|+++|.+..+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL-~P~~G~v~idg~d~~~ 68 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-IPDSGKVTIDGVDTVR 68 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc-cCCCceEEEeeccccc
Confidence 44999999999999999999999999999999999997 4789999999987654
No 250
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=8e-16 Score=99.00 Aligned_cols=53 Identities=38% Similarity=0.572 Sum_probs=49.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++++|++++|++++|+|+||||||||+++|+|++ ++.+|++++++.++.
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-~~~~G~i~~~~~~~~ 64 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-KPTSGEILIDGKDIA 64 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcc
Confidence 47999999999999999999999999999999999997 578999999998654
No 251
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.67 E-value=3.1e-16 Score=118.25 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=49.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++|+||++++|+.++|+|+||||||||+++|+|+. +|++|+|.++|.+++
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~ 406 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLS 406 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhh
Confidence 56999999999999999999999999999999999997 578999999998875
No 252
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.67 E-value=2.7e-16 Score=120.77 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=53.5
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++|.+.. ....+++|+||+|++|+.++|+||||||||||+++|+|+. +|++|+|.++|.+++
T Consensus 483 vsf~y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~ 544 (710)
T TIGR03796 483 ITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPRE 544 (710)
T ss_pred EEEecCC-CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHH
Confidence 4444432 2357999999999999999999999999999999999997 578999999998875
No 253
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1e-16 Score=111.61 Aligned_cols=55 Identities=38% Similarity=0.536 Sum_probs=50.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++++++++||++++||+.+|+||||+|||||||.|+|.. .|++|++.++|.+++
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~ 66 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLN 66 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChh
Confidence 3578999999999999999999999999999999999997 478999999998765
No 254
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.5e-16 Score=111.36 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=49.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN----EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~----~~~G~i~~~~~~~~ 73 (76)
...+|+++||+|++|++++|+|||||||||||++|+|+..+ +++|+|.++|.++.
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 35799999999999999999999999999999999999642 46899999999874
No 255
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.5e-16 Score=109.08 Aligned_cols=51 Identities=31% Similarity=0.482 Sum_probs=44.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+.+.+++++||++.+|++++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-~~~~G~v~~~G 71 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-EIYDSKIKVDG 71 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCcCceeEcC
Confidence 3467999999999999999999999999999999999996 46776666655
No 256
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=1.6e-16 Score=111.29 Aligned_cols=53 Identities=34% Similarity=0.397 Sum_probs=49.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
....+|+||||++.+||.+||+|+||||||||||+|+|.+ +|++|+|.++|+.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v 90 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKV 90 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceE
Confidence 3578999999999999999999999999999999999997 6899999998864
No 257
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=110.81 Aligned_cols=57 Identities=32% Similarity=0.447 Sum_probs=52.9
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++.+.+++++|++|++|.+++++|||||||||||.++++|. +.++|+|+++|.++++
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~ 67 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTS 67 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeeccc
Confidence 46789999999999999999999999999999999999997 5789999999998763
No 258
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.67 E-value=4.6e-16 Score=117.18 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=49.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g~~i~ 407 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDGAAVS 407 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC
Confidence 46999999999999999999999999999999999997 578999999998875
No 259
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.67 E-value=2.2e-16 Score=123.08 Aligned_cols=62 Identities=29% Similarity=0.417 Sum_probs=53.5
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++|.+.. ....+|+|+||+|++||.++|+|+||||||||+|++.|+. .|++|+|.+||.+++
T Consensus 477 vsf~y~~-~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~ 538 (709)
T COG2274 477 VSFRYGP-DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLN 538 (709)
T ss_pred EEEEeCC-CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHH
Confidence 3444433 2347999999999999999999999999999999999997 578999999999876
No 260
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.66 E-value=3.2e-16 Score=121.04 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=53.7
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++|.++...+.++++|+||++++||.++|+||||||||||+++|.|+. +|++|+|.++|.+++
T Consensus 484 Vsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 484 VSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHH
Confidence 444443222367999999999999999999999999999999999997 578999999998875
No 261
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.66 E-value=4.2e-16 Score=109.67 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=54.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++++.+.|.. +...+|+++||+|++||+++|+|+||||||||+++|+|+. + .+|+|+++|.++.
T Consensus 3 i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~ 68 (275)
T cd03289 3 MTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhh
Confidence 445555554431 2346999999999999999999999999999999999997 4 6899999998764
No 262
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.66 E-value=4.4e-16 Score=117.21 Aligned_cols=53 Identities=36% Similarity=0.483 Sum_probs=49.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++|+++||++++|+.++|+||||||||||+++|+|+. |++|+|.++|.++.
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~ 414 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELR 414 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecc
Confidence 357999999999999999999999999999999999996 46999999998775
No 263
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.66 E-value=2.7e-16 Score=120.85 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=49.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|+++||+|++|+.++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLK 539 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHH
Confidence 57999999999999999999999999999999999997 578999999998764
No 264
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.2e-16 Score=110.60 Aligned_cols=54 Identities=35% Similarity=0.601 Sum_probs=50.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
+.+++|+|++|.+||+++++||||||||||||+++|+. +|+.|+|.+++..++-
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i~l~~r~i~g 71 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSIQLNGRRIEG 71 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceEEECCEeccC
Confidence 56999999999999999999999999999999999996 5789999999998763
No 265
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.66 E-value=3.7e-16 Score=116.92 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=48.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||+|++|++++|+||||||||||+++|+|++ + ++|+|+++|.++.
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLH 350 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEcc
Confidence 57999999999999999999999999999999999996 4 7999999998764
No 266
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.66 E-value=4.8e-16 Score=115.98 Aligned_cols=48 Identities=31% Similarity=0.484 Sum_probs=45.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
+.+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|+++
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~ 344 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EPTSGEVNVR 344 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEEe
Confidence 57999999999999999999999999999999999997 5789999995
No 267
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.66 E-value=3.6e-16 Score=117.64 Aligned_cols=65 Identities=31% Similarity=0.447 Sum_probs=57.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++..+.++| +...++++|||++++||+.+|+|.||+|||||+++|+|+. .|++|+|+++|+++.
T Consensus 5 l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~ 69 (501)
T COG3845 5 LEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVR 69 (501)
T ss_pred EEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEec
Confidence 4555666655 3588999999999999999999999999999999999997 578999999999765
No 268
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.66 E-value=4.7e-16 Score=117.29 Aligned_cols=62 Identities=34% Similarity=0.475 Sum_probs=51.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
++++++.+.|. +.+.+++++||+|++|++++|+|||||||||||++|+|++ +|++|+|.+++
T Consensus 7 l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-~p~~G~i~~~~ 68 (556)
T PRK11819 7 YTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFEGEARPAP 68 (556)
T ss_pred EEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecC
Confidence 44455544441 1367999999999999999999999999999999999997 57899998863
No 269
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.66 E-value=5.7e-16 Score=116.10 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=49.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++++++|++++||.++|+|+||||||||+++|+|+. +|++|+|.++|.+++
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLR 405 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHH
Confidence 57999999999999999999999999999999999997 578999999998765
No 270
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4e-16 Score=116.16 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=48.3
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~~~ 328 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRAGGEIRLNGKDIS 328 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCEECC
Confidence 4899999999999999999999999999999999997 578999999998764
No 271
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=2.7e-16 Score=106.94 Aligned_cols=56 Identities=32% Similarity=0.457 Sum_probs=52.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
+...+|+++||++.+||+++|+||||||||||+|+++-|+ +|+.|.++|.|++++.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~ 69 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVST 69 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccc
Confidence 4578999999999999999999999999999999999996 6899999999998874
No 272
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.1e-15 Score=106.19 Aligned_cols=53 Identities=32% Similarity=0.487 Sum_probs=49.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+++++||++++|++++|+|+||||||||+++++|++ +|..|.|+++|.+.+
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v~~~g~~~~ 69 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEVLVDGLDTS 69 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEEEECCeecc
Confidence 68999999999999999999999999999999999997 578999999998754
No 273
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=110.14 Aligned_cols=48 Identities=33% Similarity=0.418 Sum_probs=44.9
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLF 63 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcc
Confidence 899999999999999999999999999999997 578999999998754
No 274
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=3.8e-16 Score=104.22 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=46.6
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+...+++++ |++++|++++|+||||||||||+++|+|+. +|++|+|.++|..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~ 62 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGIT 62 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEE
Confidence 346788885 999999999999999999999999999997 5789999999864
No 275
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.65 E-value=4.8e-16 Score=114.06 Aligned_cols=52 Identities=27% Similarity=0.345 Sum_probs=48.8
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
+...+++++||+|++||+++|+|+||||||||+++|+|++ +|++|+|+++|+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~ 86 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDG 86 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCE
Confidence 5678999999999999999999999999999999999997 578999999986
No 276
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.65 E-value=7.4e-16 Score=114.99 Aligned_cols=60 Identities=32% Similarity=0.470 Sum_probs=50.6
Q ss_pred eEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEC
Q psy12072 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKK 68 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~G~i~~~ 68 (76)
+.+++.++| +.+.+++++||++.+|++++|+|||||||||||++|+|+++ +|++|+|+++
T Consensus 2 ~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 2 EVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred EEEEEEEEE-----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 345555544 23579999999999999999999999999999999999963 4789999986
No 277
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.65 E-value=8.5e-16 Score=108.43 Aligned_cols=49 Identities=35% Similarity=0.516 Sum_probs=46.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+.+++++||++++|++++|+||||||||||+++|+|++ +|++|+|.++|
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g 98 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSG 98 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECC
Confidence 56999999999999999999999999999999999996 57899999877
No 278
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.65 E-value=5.8e-16 Score=115.81 Aligned_cols=62 Identities=29% Similarity=0.387 Sum_probs=53.0
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++|.++. ....++++++|++++|++++|+|+||||||||+++|+|+. +|++|+|+++|.+++
T Consensus 336 v~f~y~~-~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 336 VTFRYPG-RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLA 397 (571)
T ss_pred EEEEcCC-CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEeHH
Confidence 3444432 2357999999999999999999999999999999999997 578999999998765
No 279
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.64 E-value=9.4e-16 Score=108.51 Aligned_cols=71 Identities=27% Similarity=0.268 Sum_probs=57.6
Q ss_pred eeEEEEEEEEEeCC--CC--CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 3 LQTHVTMVTFFNEP--SP--AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~--~~--~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++.++..+.|.... .. ...++++|||+|++||+++|+|+|||||||+-|+|.||+ +|++|+|+++|+++++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFEGKDITK 79 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEcCcchhh
Confidence 44555555554321 11 258999999999999999999999999999999999997 5789999999988754
No 280
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=4.3e-17 Score=112.72 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=53.4
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++.+.++++|||++++||+++|+||||+||||.+.++.|+. ++++|.|++++.++++
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~ 70 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITK 70 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCccccc
Confidence 46789999999999999999999999999999999999997 5789999999999875
No 281
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.64 E-value=4.8e-16 Score=106.94 Aligned_cols=50 Identities=34% Similarity=0.490 Sum_probs=46.6
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+|+++||++++|++++|+||||||||||+++|+|+. ++ +|+|.++|+++.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~ 60 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLE 60 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecC
Confidence 899999999999999999999999999999999996 44 899999998764
No 282
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.64 E-value=6.5e-16 Score=116.55 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~ 380 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLT 380 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHh
Confidence 357999999999999999999999999999999999996 578999999998764
No 283
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.64 E-value=9.4e-16 Score=114.96 Aligned_cols=54 Identities=35% Similarity=0.503 Sum_probs=50.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|+.++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 330 ~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~i~ 383 (544)
T TIGR01842 330 KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSVRLDGADLK 383 (544)
T ss_pred CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEehh
Confidence 357999999999999999999999999999999999997 578999999998764
No 284
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1e-15 Score=114.62 Aligned_cols=50 Identities=28% Similarity=0.407 Sum_probs=46.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+.+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|.+++
T Consensus 331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~ 380 (530)
T PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGTVKWSE 380 (530)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECC
Confidence 357999999999999999999999999999999999996 57899999876
No 285
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.64 E-value=1.1e-15 Score=115.26 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=49.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++++|++++|++++|+|+||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~ 400 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIR 400 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhh
Confidence 46999999999999999999999999999999999997 578999999998775
No 286
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.1e-15 Score=113.43 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=49.1
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||++++||+++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAGTITLHGKKIN 313 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCccEEEECCEECC
Confidence 45899999999999999999999999999999999996 578999999998764
No 287
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.1e-15 Score=102.52 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=44.0
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++||++++ ++++|+||||||||||+++|+|++ +|++|+|+++|.++.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~ 62 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLF 62 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecc
Confidence 99999999 999999999999999999999997 578999999998753
No 288
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=6.2e-16 Score=107.70 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=53.5
Q ss_pred EEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcceEEECCEecccc
Q psy12072 9 MVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE----KEEEKKKKKKEKEKK 75 (76)
Q Consensus 9 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~----~~G~i~~~~~~~~~~ 75 (76)
.+.+|+ +.+.+|++|+++|+++++++||||||||||||||++.++.+.- ..|+|.++|+++-..
T Consensus 12 ~l~~yY---g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 12 DLNLYY---GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEEE---CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 344453 5688999999999999999999999999999999999996421 259999999987643
No 289
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.63 E-value=1.8e-15 Score=114.16 Aligned_cols=50 Identities=30% Similarity=0.545 Sum_probs=46.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+.+++++||+|++|++++|+||||||||||+++|+|++ +|++|+|++++
T Consensus 336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~ 385 (556)
T PRK11819 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSGTIKIGE 385 (556)
T ss_pred CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECC
Confidence 467999999999999999999999999999999999997 57899999854
No 290
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.63 E-value=1.1e-15 Score=110.28 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=45.0
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|+++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLF 62 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECc
Confidence 899999999999999999999999999999997 578999999998763
No 291
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.63 E-value=1.3e-15 Score=116.98 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+++++||++++|+.++|+|+||||||||+++|+|+. +|++|+|.++|.+++
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLA 522 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehh
Confidence 356999999999999999999999999999999999997 578999999998875
No 292
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.63 E-value=2.7e-15 Score=114.35 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=47.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+.+|+++||+|++|++++|+|||||||||||++|+|+. +|++|+|.++|.+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~ 87 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSA 87 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEe
Confidence 57999999999999999999999999999999999996 5789999998864
No 293
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.6e-16 Score=107.15 Aligned_cols=67 Identities=34% Similarity=0.398 Sum_probs=55.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~G~i~~~~~~~~ 73 (76)
|+.++.+++.. +.+++|++|+|+|++||+.+|+||||||||||.++|+|... ...+|+|.++|+++.
T Consensus 4 L~I~dLhv~v~----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 4 LEIKDLHVEVE----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred eEEeeeEEEec----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 55555555442 12589999999999999999999999999999999999952 357899999999876
No 294
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=1.2e-15 Score=114.85 Aligned_cols=50 Identities=38% Similarity=0.573 Sum_probs=46.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+++++++||+|++|++++|+|||||||||||++|+|+. +|++|+|++++
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-~p~~G~i~~~~ 66 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFNGEARPAP 66 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecC
Confidence 357999999999999999999999999999999999996 57899998864
No 295
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=1.9e-15 Score=113.87 Aligned_cols=50 Identities=30% Similarity=0.559 Sum_probs=46.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+.+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|++++
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~ 383 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGE 383 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECC
Confidence 457999999999999999999999999999999999997 57899998854
No 296
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=4.7e-16 Score=108.54 Aligned_cols=70 Identities=29% Similarity=0.394 Sum_probs=61.3
Q ss_pred EEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecccc
Q psy12072 5 THVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEKK 75 (76)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~~ 75 (76)
...+.+.|+.....+++++++++++|++|+++.|+|.||||||||+++|+|-+ ++++|.|+++|.+++|.
T Consensus 4 ~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~ 73 (263)
T COG1101 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKK 73 (263)
T ss_pred cccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccC
Confidence 34566777755446788999999999999999999999999999999999997 57899999999999864
No 297
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.4e-15 Score=115.45 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=45.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
.+.+++++||+|.+|++++|+|||||||||||++|+|+. +|++|+|.++
T Consensus 324 ~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~ 372 (638)
T PRK10636 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLA 372 (638)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEEC
Confidence 467999999999999999999999999999999999997 5789999886
No 298
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=9.1e-16 Score=114.21 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=48.3
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+++++||+|++|++++|+||||||||||+++|+|+. +|++|+|+++|+++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~ 318 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPID 318 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECC
Confidence 4899999999999999999999999999999999997 578999999998764
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.62 E-value=1.9e-15 Score=114.53 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=49.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++++++||++++|++++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~ 400 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQILIDGIDIN 400 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEEEECCEEhh
Confidence 46899999999999999999999999999999999997 578999999998764
No 300
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.62 E-value=1.7e-15 Score=113.86 Aligned_cols=54 Identities=31% Similarity=0.431 Sum_probs=50.5
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+++++|+||.+++||.++|+|||||||||+++.|.++.+ +++|+|.++|.+++
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~ 394 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIR 394 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehh
Confidence 4689999999999999999999999999999999999974 68999999998876
No 301
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.61 E-value=2.9e-15 Score=114.64 Aligned_cols=49 Identities=27% Similarity=0.507 Sum_probs=45.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
.+.+++++||+|.+|++++|+|||||||||||++|+|+. +|++|+|+++
T Consensus 331 ~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~ 379 (635)
T PRK11147 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHCG 379 (635)
T ss_pred CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEC
Confidence 467999999999999999999999999999999999996 5789999884
No 302
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.61 E-value=2.8e-15 Score=114.06 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=55.5
Q ss_pred EEEEEEEEEeCC------CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 5 THVTMVTFFNEP------SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 5 ~~~~~~~~~~~~------~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
..++.+.|.... .+...++++|||++.+||+++|+|+||||||||.|+|+|+. +|++|.|.++|.+
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P~~G~i~~~g~~ 354 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PPSSGSIIFDGQD 354 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEeCcc
Confidence 455666666321 24578999999999999999999999999999999999997 5689999999876
No 303
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.61 E-value=1.1e-15 Score=113.69 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=48.0
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+++++||+|.+|++++|+||||||||||+++|+|+. +|++|+|.++|++++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-~p~~G~I~~~g~~i~ 317 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVV 317 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 4699999999999999999999999999999999997 578999999998764
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.60 E-value=6.2e-15 Score=113.24 Aligned_cols=69 Identities=25% Similarity=0.376 Sum_probs=55.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.+.|. ...+...+++++||++++||+++|+||||||||||+++|+|+. ++++|++.++|+++.
T Consensus 5 l~~~nl~~~y~-~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~i~ 73 (648)
T PRK10535 5 LELKDIRRSYP-SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTYRVAGQDVA 73 (648)
T ss_pred EEEeeEEEEeC-CCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcC
Confidence 34445544432 1112357999999999999999999999999999999999996 578999999998765
No 305
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=5.1e-16 Score=111.13 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=49.8
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+....++.|+||+|++|++++++|||||||||+||+|+|++ .|++|.|.++|..-
T Consensus 34 ~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~P 88 (325)
T COG4586 34 ERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDP 88 (325)
T ss_pred hhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeEEecCcCc
Confidence 34567999999999999999999999999999999999997 57899999999654
No 306
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.60 E-value=6.6e-15 Score=106.14 Aligned_cols=70 Identities=27% Similarity=0.307 Sum_probs=59.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE----KEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~----~~G~i~~~~~~~~ 73 (76)
++.++..+.|.... +...++++|||++++||+++|+|.|||||||+.+.|.|+++++ .+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~ 75 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence 45677888887653 4688999999999999999999999999999999999998522 4689999998653
No 307
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3e-15 Score=114.08 Aligned_cols=62 Identities=31% Similarity=0.479 Sum_probs=53.2
Q ss_pred EEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 9 MVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 9 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|.++. + .++++|++|++++|+.++|+|+||||||||+++|+|+. ++++|+|.+||.+++
T Consensus 325 ~l~~~y~~-g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~ 386 (559)
T COG4988 325 NLSFRYPD-G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLR 386 (559)
T ss_pred ceEEecCC-C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCcccc
Confidence 34444432 2 38999999999999999999999999999999999997 579999999998765
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.60 E-value=2.1e-15 Score=112.64 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=47.6
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++||++++|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEIN 328 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECC
Confidence 699999999999999999999999999999999996 578999999998764
No 309
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.2e-15 Score=105.03 Aligned_cols=54 Identities=31% Similarity=0.468 Sum_probs=49.6
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+++++|+++|++|++||.++|+|||||||||||++++|.+ +|.+|.+.+.|+..
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~ 95 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRF 95 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeec
Confidence 5689999999999999999999999999999999999997 56799999888754
No 310
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.59 E-value=2.6e-15 Score=102.96 Aligned_cols=51 Identities=41% Similarity=0.563 Sum_probs=46.0
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
--.+++.|+.||+++|+|||||||||||++|+|++ .|.+|+|+++|++.+.
T Consensus 15 ~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~ 65 (231)
T COG3840 15 PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTA 65 (231)
T ss_pred eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCc
Confidence 34678899999999999999999999999999997 5789999999998763
No 311
>KOG0058|consensus
Probab=99.59 E-value=3.4e-15 Score=116.04 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=58.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++ +|-++.....++++|+||+|+|||++||+||||+||||+.++|-.+. .|.+|+|.+||.++.
T Consensus 466 IeF~~V--sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY-~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 466 IEFEDV--SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY-DPTSGRILLDGVPIS 533 (716)
T ss_pred EEEEEe--eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCeehh
Confidence 344444 44555444688999999999999999999999999999999999996 578999999999886
No 312
>PLN03232 ABC transporter C family member; Provisional
Probab=99.59 E-value=5.3e-15 Score=121.68 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=56.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| .+ +..++|+|+||+|++||.+||+|+||||||||+++|.|+. +|++|+|.++|.+++
T Consensus 1235 I~f~nVsf~Y--~~-~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~ 1301 (1495)
T PLN03232 1235 IKFEDVHLRY--RP-GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVA 1301 (1495)
T ss_pred EEEEEEEEEE--CC-CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhh
Confidence 4555555554 22 2357999999999999999999999999999999999997 578999999999875
No 313
>PLN03130 ABC transporter C family member; Provisional
Probab=99.59 E-value=7.4e-15 Score=121.72 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=56.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++++++.++|. + +..++|+|+||+|++||.+||+|+||||||||+++|.|+. +|++|+|.++|.++++
T Consensus 1238 I~f~nVsf~Y~--~-~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1238 IKFEDVVLRYR--P-ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISK 1305 (1622)
T ss_pred EEEEEEEEEeC--C-CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEeccc
Confidence 45555555552 2 2347999999999999999999999999999999999997 5789999999998763
No 314
>PLN03211 ABC transporter G-25; Provisional
Probab=99.58 E-value=4.2e-15 Score=114.78 Aligned_cols=55 Identities=36% Similarity=0.586 Sum_probs=49.5
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE-KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~-~~G~i~~~~~~~~ 73 (76)
++.+|+++|+++++||+++|+|||||||||||++|+|+..+. .+|+|.++|+++.
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~ 135 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT 135 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc
Confidence 567999999999999999999999999999999999996432 4899999998764
No 315
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.58 E-value=2.8e-15 Score=103.71 Aligned_cols=66 Identities=32% Similarity=0.457 Sum_probs=57.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC-Eeccc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK-KEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~-~~~~~ 74 (76)
++...+.++| ++..+++++||++.+||+-+||||||+||||+|.+|+|.. +|+.|+++++| .++++
T Consensus 6 L~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G~v~f~g~~dl~~ 72 (249)
T COG4674 6 LYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEGEVLFDGDTDLTK 72 (249)
T ss_pred EEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcceEEEcCchhhcc
Confidence 5566777877 3578999999999999999999999999999999999996 57899999998 66654
No 316
>PTZ00243 ABC transporter; Provisional
Probab=99.58 E-value=1e-14 Score=120.53 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=55.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++++++.++| .. +...+|+||||+|++||.++|+|++|||||||+++|.|+. ++++|+|.++|.++.+
T Consensus 1309 I~f~nVsf~Y--~~-~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1309 LVFEGVQMRY--RE-GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGA 1376 (1560)
T ss_pred EEEEEEEEEe--CC-CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEccc
Confidence 3444444443 22 3356999999999999999999999999999999999997 4789999999998763
No 317
>KOG0057|consensus
Probab=99.57 E-value=6.2e-15 Score=112.35 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=49.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.+++|+++||+|++||.+||+|+|||||||++|+|.++.+ ++|+|+++|+++.+
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~ 417 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKE 417 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhh
Confidence 3569999999999999999999999999999999999964 79999999998864
No 318
>PLN03073 ABC transporter F family; Provisional
Probab=99.57 E-value=1.2e-14 Score=113.35 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=45.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
..+++++||+|.+|++++|+|||||||||||++|+|++ +|++|+|++++
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~I~~~~ 570 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGTVFRSA 570 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCceEEECC
Confidence 46999999999999999999999999999999999997 57899998764
No 319
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.57 E-value=1.3e-14 Score=118.93 Aligned_cols=56 Identities=30% Similarity=0.534 Sum_probs=50.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN--EKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~--~~~G~i~~~~~~~~ 73 (76)
+.+.+|++||+.+++|++++|+|||||||||||++|+|+..+ +++|+|.++|+++.
T Consensus 774 ~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831 (1394)
T ss_pred CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 346899999999999999999999999999999999999642 57899999998864
No 320
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.57 E-value=1.9e-14 Score=121.68 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=49.9
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++++||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++|.++.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSGDATVAGKSIL 2004 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECc
Confidence 67999999999999999999999999999999999997 578999999998874
No 321
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.56 E-value=1.4e-14 Score=119.38 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=56.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++++++.++|. . +...+|+++||+|++||.++|+|+||||||||+++|.|+. ++++|+|.++|.++.+
T Consensus 1285 I~f~nVsf~Y~--~-~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1285 VEFRNYCLRYR--E-DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred EEEEEEEEEeC--C-CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccc
Confidence 45555555442 2 2347999999999999999999999999999999999997 5789999999998763
No 322
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.56 E-value=1.1e-14 Score=99.39 Aligned_cols=57 Identities=37% Similarity=0.527 Sum_probs=52.2
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.+...+|++|+|.|++||.++|+|||||||||||-+++|+. .+++|+|++.|+++.+
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV~l~G~~L~~ 76 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEVRLLGQPLHK 76 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceEEEcCcchhh
Confidence 35678999999999999999999999999999999999996 5789999999988764
No 323
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=8.9e-15 Score=97.54 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=42.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..++++++||++++|++++|+|||||||||||++|.+ ++|++.+++.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~ 53 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISF 53 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCc
Confidence 5789999999999999999999999999999999842 4788988765
No 324
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.56 E-value=2.1e-14 Score=109.30 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=60.3
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE---KEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~---~~G~i~~~~~~~~ 73 (76)
|+.++..+.|...+ +...+++||||++.+||++||+|.|||||||+.++|.|++++. .+|+|.++|.++-
T Consensus 6 L~V~nL~v~~~~~~-~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~ 78 (539)
T COG1123 6 LEVENLTVEFATDG-GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL 78 (539)
T ss_pred EEEeceEEEEecCC-cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh
Confidence 56778888888763 4468999999999999999999999999999999999998543 3799999998553
No 325
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.56 E-value=1.5e-14 Score=119.12 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=42.5
Q ss_pred EEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC
Q psy12072 9 MVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN 59 (76)
Q Consensus 9 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~ 59 (76)
.++|.++.....++|+++||+|++|+.++|+||||||||||+++|.|+.+|
T Consensus 1170 nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1170 DVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 344544432235799999999999999999999999999999999999764
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.55 E-value=1.6e-14 Score=119.02 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=48.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE-CCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK-KKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~-~~~~~~ 73 (76)
.++|+++||+|++|++++|+||||||||||+++|+|+. +|++|+|++ +|.+++
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLK 451 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchh
Confidence 57999999999999999999999999999999999997 578999999 456553
No 327
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.55 E-value=2.9e-14 Score=120.59 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=50.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++.+||+++|+||||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG~I~i~G~dI~ 995 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSGTVLVGGKDIE 995 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCceEEEECCEECc
Confidence 467999999999999999999999999999999999997 578999999998874
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.55 E-value=5.5e-15 Score=102.88 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=41.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
..+++++++ +.+|++++|+|||||||||||++|+|++ +|++|+|+
T Consensus 14 ~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~ 58 (255)
T cd03236 14 SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFD 58 (255)
T ss_pred chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEe
Confidence 369999995 9999999999999999999999999996 57899996
No 329
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.9e-15 Score=111.57 Aligned_cols=62 Identities=31% Similarity=0.387 Sum_probs=53.3
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++|.+++ ...++|+++||++++||.++|+|+||||||||++.|.|.. ++++|+|.++|.++.
T Consensus 342 vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~ 403 (573)
T COG4987 342 VSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIA 403 (573)
T ss_pred ceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChh
Confidence 3444443 3568999999999999999999999999999999999997 478999999997654
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=1.4e-14 Score=100.18 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=43.4
Q ss_pred eeEEeeeEEEEe-----CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 20 KTILKSVSGRFR-----AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 20 ~~~l~~isl~i~-----~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
...+++++|++. +|++++|+||||||||||+++|+|++ +|++|+|.+++.
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~ 61 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD 61 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCc
Confidence 346777777776 78999999999999999999999997 578999999874
No 331
>PLN03073 ABC transporter F family; Provisional
Probab=99.53 E-value=3.4e-14 Score=110.77 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=44.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEECCE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK--NEKEEEKKKKKK 70 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~--~~~~G~i~~~~~ 70 (76)
...+|+++||+|++|++++|+|||||||||||++|+|... .|..|+|.+.++
T Consensus 189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 3569999999999999999999999999999999999641 356899976544
No 332
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.53 E-value=7.4e-15 Score=101.38 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=56.6
Q ss_pred eEEEEEEEEEeCC----CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEP----SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++.+++|.+.. .....+++.|||.+++|+.+++||.||||||||.|+|+|++ +|.+|+|.+|++++.
T Consensus 6 eV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~ 78 (267)
T COG4167 6 EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCcccc
Confidence 3444555555432 23467999999999999999999999999999999999996 689999999998764
No 333
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=2.8e-14 Score=108.43 Aligned_cols=51 Identities=31% Similarity=0.513 Sum_probs=47.2
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+.+.++++++|++.+|+.+||+|+||||||||||+|+|.+ .|++|+|....
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~ 64 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPK 64 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecC
Confidence 4689999999999999999999999999999999999997 57899998764
No 334
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.52 E-value=1.6e-14 Score=97.96 Aligned_cols=44 Identities=34% Similarity=0.447 Sum_probs=40.4
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
|++++|++++|+||||||||||+++|+|+. ++++|+|.++|+++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~ 44 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASP 44 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccc
Confidence 578999999999999999999999999996 57899999999764
No 335
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=1e-14 Score=100.33 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=52.0
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++...+|++||++.+.|+++.|||.||||||||||||.-|+ .|..|.|+++|+.+.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE-~P~~G~I~v~geei~ 71 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSAGSIRVNGEEIR 71 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc-CCCCceEEECCeEEE
Confidence 46788999999999999999999999999999999999997 578999999998775
No 336
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.52 E-value=4.9e-14 Score=108.55 Aligned_cols=50 Identities=26% Similarity=0.350 Sum_probs=45.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
++.+++++||++++||+++|+||||||||||+++|+|+. ++++|++.+++
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~ 513 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPA 513 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecC
Confidence 357999999999999999999999999999999999996 57889988753
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.52 E-value=6.1e-14 Score=115.56 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=54.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|. + +...+|+|+||+|++||.++|+|+||||||||+++|.|+. + .+|+|+++|.++.
T Consensus 1218 I~f~nVs~~Y~--~-~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~-~-~~G~I~IdG~di~ 1283 (1490)
T TIGR01271 1218 MDVQGLTAKYT--E-AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-S-TEGEIQIDGVSWN 1283 (1490)
T ss_pred EEEEEEEEEeC--C-CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEcc
Confidence 34445444442 2 3467999999999999999999999999999999999996 4 6899999999875
No 338
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.51 E-value=3.3e-14 Score=108.70 Aligned_cols=56 Identities=34% Similarity=0.485 Sum_probs=49.7
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE--KEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~--~~G~i~~~~~~~~ 73 (76)
+.+++|+++|+.+++||+++|+|||||||||||++|+|...+. .+|+|.++|.+++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~ 93 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 3578999999999999999999999999999999999996432 3799999998865
No 339
>KOG0055|consensus
Probab=99.51 E-value=3.7e-14 Score=115.04 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=56.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++++ |.++...+..+|+++||.|++|+.++|+|||||||||++++|.++.+ |.+|+|+++|.++.
T Consensus 351 ief~nV~--FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~ 418 (1228)
T KOG0055|consen 351 IEFRNVC--FSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIR 418 (1228)
T ss_pred eEEEEEE--ecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccch
Confidence 3444444 44444345789999999999999999999999999999999999974 78999999998875
No 340
>PLN03140 ABC transporter G family member; Provisional
Probab=99.50 E-value=1.2e-13 Score=113.97 Aligned_cols=55 Identities=35% Similarity=0.597 Sum_probs=48.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~~~~~~~ 73 (76)
.+.+|+++|+.+++|++++|+|||||||||||++|+|+..+ +.+|+|.++|.+.+
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~ 947 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 947 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC
Confidence 45799999999999999999999999999999999999532 35899999997654
No 341
>KOG0061|consensus
Probab=99.49 E-value=1.6e-13 Score=105.51 Aligned_cols=56 Identities=43% Similarity=0.661 Sum_probs=50.2
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN--EKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~--~~~G~i~~~~~~~~~ 74 (76)
.+++|++|+..+++||+.||+|||||||||||++|+|.... ..+|+|.+||++...
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 58899999999999999999999999999999999999643 368999999966543
No 342
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.48 E-value=8.5e-14 Score=105.77 Aligned_cols=59 Identities=32% Similarity=0.477 Sum_probs=53.0
Q ss_pred eCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 14 NEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 14 ~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++...++++++++|++++|+.++||||||||||||.|+|.|.+ +|.+|.|+++|.++.
T Consensus 343 ~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~ 401 (580)
T COG4618 343 APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLR 401 (580)
T ss_pred cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhh
Confidence 34445689999999999999999999999999999999999997 578999999997664
No 343
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.2e-13 Score=103.36 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=50.7
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecccc
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEKK 75 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~~ 75 (76)
.-+.+|+++|++||++-|+|.||||||||++.+.|+. .|++|+|++||++++.+
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e 390 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAE 390 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCC
Confidence 7889999999999999999999999999999999996 57899999999998754
No 344
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.48 E-value=1.1e-13 Score=86.52 Aligned_cols=47 Identities=21% Similarity=0.165 Sum_probs=42.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++++++|++++|++++|+||||||||||++++. +|.+.+.+.++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~ 48 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNV 48 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHH
Confidence 57999999999999999999999999999999975 678888887653
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.48 E-value=7.7e-14 Score=114.49 Aligned_cols=55 Identities=31% Similarity=0.417 Sum_probs=49.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK---NEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~---~~~~G~i~~~~~~~~ 73 (76)
.+.+|+|+|+.+++||+++|+||||||||||||+|+|+.. ++.+|+|.++|.+++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~ 130 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE 130 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehH
Confidence 4679999999999999999999999999999999999952 357999999998764
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=2e-13 Score=104.47 Aligned_cols=46 Identities=28% Similarity=0.536 Sum_probs=42.8
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
.|++++|+|++||+++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G~I~~~ 399 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEGEVDPE 399 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEe
Confidence 589999999999999999999999999999999997 5789999874
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.47 E-value=9.1e-14 Score=114.66 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=49.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEK---EEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~---~G~i~~~~~~~~ 73 (76)
.+.+|+|+|+.+++|++++|+|||||||||||++|+|+.. +. +|+|.++|.+++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~ 233 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLN 233 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEech
Confidence 4679999999999999999999999999999999999974 55 899999998764
No 348
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=6.4e-13 Score=89.48 Aligned_cols=56 Identities=29% Similarity=0.445 Sum_probs=50.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN--EKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~--~~~G~i~~~~~~~~ 73 (76)
.++-+|-+++|+|.+||++.|+|||||||||||..+.|.+.+ .-+|+++++++.++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~ 70 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc
Confidence 467899999999999999999999999999999999999753 35899999998775
No 349
>KOG0056|consensus
Probab=99.44 E-value=2e-13 Score=104.42 Aligned_cols=62 Identities=27% Similarity=0.467 Sum_probs=53.9
Q ss_pred EEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 9 MVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 9 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|.+. .++++++||||.+++|+.++|+||||+||||++|++-++.+ ..+|.|.++|+++.
T Consensus 542 nvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 542 NVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIR 603 (790)
T ss_pred EeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHH
Confidence 3444443 35789999999999999999999999999999999999964 67999999999875
No 350
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.1e-13 Score=91.74 Aligned_cols=64 Identities=28% Similarity=0.311 Sum_probs=51.9
Q ss_pred eEEEEEEEEEeCCCC--CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 4 QTHVTMVTFFNEPSP--AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
..+++.++|.-+..+ .-++++++||+++.||+++|-||||+|||||||++.+.. .+++|.|++.
T Consensus 6 ~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~ 71 (235)
T COG4778 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVR 71 (235)
T ss_pred eeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEE
Confidence 344555555532222 356999999999999999999999999999999999996 5789999884
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=99.44 E-value=7.2e-14 Score=106.89 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=42.1
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
..+|++++ .+++|++++|+||||||||||||+|+|++ +|+.|+|.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l-~p~~G~i~ 131 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYE 131 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcccc
Confidence 47999999 89999999999999999999999999997 47899997
No 352
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.43 E-value=1.6e-13 Score=103.71 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=45.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.++|++|++++++||+++|+|||||||||||+ +++..++.+|+|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 46899999999999999999999999999999 677655444489999988764
No 353
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.43 E-value=7.2e-13 Score=109.42 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=46.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..++++++||++++|++++|+||||||||||+++|+|+. ++.+|+|.++|.
T Consensus 650 ~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~~~~G~i~~~g~ 700 (1522)
T TIGR00957 650 LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVHMKGS 700 (1522)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-ccCCcEEEECCE
Confidence 357999999999999999999999999999999999996 578999998873
No 354
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=4e-13 Score=97.97 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=50.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+...-++++||++++||+.+|+|-||||||||+|++.+|. +|++|+|+++|.++.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ept~G~ilv~g~di~ 93 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EPTRGEILVDGKDIA 93 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CCCCceEEECCcchh
Confidence 4456889999999999999999999999999999999997 578999999998765
No 355
>KOG0055|consensus
Probab=99.40 E-value=6.8e-13 Score=107.81 Aligned_cols=67 Identities=25% Similarity=0.457 Sum_probs=58.8
Q ss_pred EEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 7 VTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
...++|.++.....++++|+||++++|+.++|+|||||||||.+.+|-++. .|+.|.|.++|+++.+
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-dp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-DPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCccccc
Confidence 334666776656788999999999999999999999999999999999996 4789999999998764
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.40 E-value=6.8e-13 Score=100.97 Aligned_cols=49 Identities=37% Similarity=0.529 Sum_probs=44.9
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+.+++++||.|.+|+.++|+||||+|||||||+|+|... +.+|.|.+..
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~ 383 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGE 383 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCC
Confidence 689999999999999999999999999999999999864 5699998754
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.38 E-value=8.6e-13 Score=108.88 Aligned_cols=49 Identities=37% Similarity=0.527 Sum_probs=46.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+++|+|+||+|++|++++|+|||||||||||++|+|+. ++.+|+|.++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-~~~~G~i~~~g 487 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPSEGKIKHSG 487 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECC
Confidence 46899999999999999999999999999999999996 57899999987
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.35 E-value=3.4e-12 Score=106.11 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=45.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-ceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKE-EEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~-G~i~~~~ 69 (76)
..++|+|+||++++|++++|+||+|||||||+++|.|+. ++.+ |+|.+.+
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~I~l~~ 679 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVVIRG 679 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCceEEEcC
Confidence 357999999999999999999999999999999999997 4678 8988765
No 359
>KOG0054|consensus
Probab=99.34 E-value=3.3e-12 Score=105.04 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=59.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
+++++..++|.. +...+|++|||.|++||.+||+|..|||||||+.+|-++. .+.+|.|.+||.++.+
T Consensus 1139 I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccCCeEEEcCeeccc
Confidence 567777776653 3468999999999999999999999999999999999996 4689999999998763
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.5e-12 Score=89.50 Aligned_cols=51 Identities=29% Similarity=0.356 Sum_probs=46.3
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
++.....++|||++.|||+.+|+|.|||||||||+||++-+ +|++|.|.+.
T Consensus 16 Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~ 66 (258)
T COG4107 16 YGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYR 66 (258)
T ss_pred hCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEE
Confidence 45567899999999999999999999999999999999997 5789999874
No 361
>PLN03232 ABC transporter C family member; Provisional
Probab=99.32 E-value=8e-12 Score=103.21 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=44.3
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK 65 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i 65 (76)
++|.+......++|+|+||++++|+.++|+||+|||||||+++|.|+.+ +.+|.+
T Consensus 620 vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~G~i 674 (1495)
T PLN03232 620 GYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSS 674 (1495)
T ss_pred eEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccCCCE
Confidence 3444432224679999999999999999999999999999999999974 566543
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.32 E-value=4.3e-12 Score=105.24 Aligned_cols=50 Identities=30% Similarity=0.450 Sum_probs=45.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+.+|+++||+|++|++++|+|||||||||||++|+|+. ++.+|+|.+.+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-~~~~G~i~~~~ 721 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAER 721 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECC
Confidence 457999999999999999999999999999999999997 57899988753
No 363
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=1.2e-11 Score=84.27 Aligned_cols=65 Identities=34% Similarity=0.383 Sum_probs=53.3
Q ss_pred CceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
|++..+.+.. + ++...+|.||+|+-++||.++++||||+|||||+|.+.-++ .|.+|+..+.++.
T Consensus 1 msirv~~in~--~---yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle-~p~sg~l~ia~~~ 65 (242)
T COG4161 1 MSIQLNGINC--F---YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNH 65 (242)
T ss_pred CceEEccccc--c---cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh-CCCCCeEEecccc
Confidence 4555554433 2 35678999999999999999999999999999999999996 5789999886653
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.20 E-value=1e-11 Score=84.76 Aligned_cols=33 Identities=39% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHH
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLL 50 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll 50 (76)
....+++++||+|++||+++|+||||||||||+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 346799999999999999999999999999996
No 365
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.19 E-value=6.6e-11 Score=88.88 Aligned_cols=70 Identities=26% Similarity=0.230 Sum_probs=60.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE----KEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~----~~G~i~~~~~~~~ 73 (76)
++..+.++.|.... +...++++|||++.+||.++|+|.||||||-..+.|.+|++.+ .+|+|.++|.++-
T Consensus 7 L~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 7 LSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred eeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 56678889888765 6789999999999999999999999999999999999997532 3689999998764
No 366
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.19 E-value=2.5e-11 Score=83.44 Aligned_cols=51 Identities=37% Similarity=0.558 Sum_probs=46.3
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+-|-++|.++..||++-++|||||||||||-.++|+. |-+|+|.+.|.+++
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~ 63 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLE 63 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchh
Confidence 3567889999999999999999999999999999996 46999999998875
No 367
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.18 E-value=8.7e-11 Score=88.24 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCC------CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 4 QTHVTMVTFFNEP------SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 4 ~~~~~~~~~~~~~------~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+.+.+.|--.+ .....+++++||++++|+.++|+|.||||||||=.+|.+|+ + .+|.|+|.|+++.
T Consensus 278 ~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~-s~G~I~F~G~~i~ 351 (534)
T COG4172 278 EVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-P-SQGEIRFDGQDID 351 (534)
T ss_pred EecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-C-cCceEEECCcccc
Confidence 4455556555332 13467999999999999999999999999999999999996 3 4699999999876
No 368
>KOG0059|consensus
Probab=99.18 E-value=2.9e-11 Score=96.04 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=48.8
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++++++|.|++||+.|++|+|||||||++++|.|.. ++++|+++++|.+++.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~ 631 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITV 631 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCcccc
Confidence 999999999999999999999999999999999997 5789999999887764
No 369
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.17 E-value=8.6e-11 Score=90.72 Aligned_cols=50 Identities=32% Similarity=0.376 Sum_probs=44.2
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
.....+++.+|.+++|+.+-|.||||||||||+|+|+|+. |-.+|.|.+-
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-P~g~G~I~~P 453 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-PWGSGRISMP 453 (604)
T ss_pred CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-ccCCCceecC
Confidence 3458999999999999999999999999999999999997 4567877653
No 370
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4e-11 Score=89.96 Aligned_cols=62 Identities=27% Similarity=0.421 Sum_probs=54.5
Q ss_pred EEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 9 MVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 9 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|.+.+ .+++|++++|.+++|+.++++||||+||||++++|.++.+ +.+|.|.++|+++.
T Consensus 267 ~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir 328 (497)
T COG5265 267 NVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIR 328 (497)
T ss_pred EEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHH
Confidence 45555543 4789999999999999999999999999999999999975 68999999998764
No 371
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=5.3e-11 Score=85.98 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=45.2
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.--+++|.++...+++|.|+||||||||+|+|+|+. .|++|.|.+||..+.
T Consensus 13 ~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~-rPdeG~I~lngr~L~ 63 (352)
T COG4148 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLT-RPDEGRIELNGRVLV 63 (352)
T ss_pred eEEEEeccCCCCceEEEecCCCCChhhHHHHHhccC-CccccEEEECCEEee
Confidence 344789999998899999999999999999999997 578999999998654
No 372
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.14 E-value=3.9e-11 Score=85.85 Aligned_cols=35 Identities=31% Similarity=0.654 Sum_probs=31.8
Q ss_pred EECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 38 ILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 38 liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|+|||||||||||++|+|++ ++++|+|+++|+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~ 35 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVT 35 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECC
Confidence 68999999999999999997 578999999998764
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.11 E-value=4.1e-11 Score=80.59 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=31.3
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++++++.+| +++|+||||||||||+++|+++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999 99999999999999999999986
No 374
>KOG0060|consensus
Probab=99.08 E-value=4.6e-10 Score=86.62 Aligned_cols=57 Identities=28% Similarity=0.410 Sum_probs=47.2
Q ss_pred EEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 9 MVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 9 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
++++..+.+ +..+++++||+|+.|+-+-|.||||||||+|||+++||+ |..+|.+..
T Consensus 438 ~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-p~~~G~l~k 494 (659)
T KOG0060|consen 438 EVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-PSTGGKLTK 494 (659)
T ss_pred eeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-ccCCCeEEe
Confidence 344444433 678999999999999999999999999999999999997 556777754
No 375
>KOG0054|consensus
Probab=99.05 E-value=8e-10 Score=91.25 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=50.0
Q ss_pred EEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 11 TFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 11 ~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
+|.+......+.|+||+|++++|++++|+|+.|||||+||.+|.|.. +..+|++.++|.
T Consensus 525 sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm-~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 525 SFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM-PKLSGSVAVNGS 583 (1381)
T ss_pred eEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc-ccccceEEEcCe
Confidence 33443333455999999999999999999999999999999999997 578999999874
No 376
>KOG0065|consensus
Probab=99.00 E-value=3.7e-10 Score=92.74 Aligned_cols=56 Identities=36% Similarity=0.593 Sum_probs=49.7
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~G~i~~~~~~~~ 73 (76)
+.+++|++|+--++||-++||+|+|||||||||++|+|... ---.|+|.++|.+++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 56889999999999999999999999999999999999932 124699999998876
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.99 E-value=2.5e-10 Score=75.74 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=38.9
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
..-+.+.+++|+.++|+||+|||||||+++|+++. +++.|.+.+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI-PPDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEECC
Confidence 33445678899999999999999999999999997 46788888765
No 378
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.98 E-value=5e-10 Score=75.56 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=31.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..+.++++|.. |++++|+||||||||||||+|++..
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 46777877765 6999999999999999999999864
No 379
>KOG0927|consensus
Probab=98.96 E-value=1.8e-09 Score=82.88 Aligned_cols=42 Identities=31% Similarity=0.573 Sum_probs=38.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN 59 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~ 59 (76)
.+..+++|+.|++.+|+.++|+|+|||||||+|++|+|-+.|
T Consensus 86 ~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 86 HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 357899999999999999999999999999999999999753
No 380
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.95 E-value=1.2e-09 Score=74.27 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=28.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
+...++.+++ +++++|+|||||||||||++|++
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHH
Confidence 3466777776 78999999999999999999983
No 381
>KOG0064|consensus
Probab=98.93 E-value=2e-09 Score=83.07 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
....++..++|+|++|-.+-|+||||||||+|+|+|+|++ |-.+|..++
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~ 541 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSI 541 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeec
Confidence 3456999999999999999999999999999999999997 456666554
No 382
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.91 E-value=1.4e-09 Score=82.24 Aligned_cols=50 Identities=28% Similarity=0.542 Sum_probs=43.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-------CCCcceEEEC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-------NEKEEEKKKK 68 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-------~~~~G~i~~~ 68 (76)
.+.+++|++|.+++|++++|+|+||+||||+|++|.|... .|++|.|.+-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 4679999999999999999999999999999999999852 3567777653
No 383
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.91 E-value=2.9e-09 Score=71.25 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=30.1
Q ss_pred EEeeeEEEEeCCC-EEEEECCCCCCHHHHHHHHh
Q psy12072 22 ILKSVSGRFRAGE-LSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 22 ~l~~isl~i~~g~-~~~liG~sGsGKSTll~~i~ 54 (76)
.+-++||++.+|+ +++|.||||+||||||+.|+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3458999999995 89999999999999999999
No 384
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.89 E-value=2.3e-09 Score=72.80 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=35.6
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
....+.+|++|++++|++++|+||||+||||++++++++
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999999999999844
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.89 E-value=1.4e-09 Score=73.91 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=29.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
+...+++++++ ++++|+|||||||||++++|.
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence 56779998887 899999999999999999987
No 386
>KOG0927|consensus
Probab=98.85 E-value=1.2e-09 Score=83.92 Aligned_cols=46 Identities=30% Similarity=0.423 Sum_probs=40.5
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
.++++++|-+..++.++++||||+|||||||++.|.+. |..|.+.-
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~ 449 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSR 449 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccc
Confidence 57778888999999999999999999999999999975 67887753
No 387
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.84 E-value=6.2e-09 Score=69.63 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=28.4
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
+-..++++.+|++++|+|||||||||||++|++
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 345566677899999999999999999999994
No 388
>KOG2355|consensus
Probab=98.84 E-value=1.4e-08 Score=71.46 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=44.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..+++.|++++++.|...-|+|.|||||||||++++|-.. ...|-|.+.|.
T Consensus 26 ~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-v~~~~v~Vlgr 76 (291)
T KOG2355|consen 26 SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-VGGGVVQVLGR 76 (291)
T ss_pred CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-ccCCeEEEcCc
Confidence 3589999999999999999999999999999999999863 44577777664
No 389
>PRK08149 ATP synthase SpaL; Validated
Probab=98.83 E-value=9.6e-09 Score=76.87 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEECCEec
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKE---EEKKKKKKEK 72 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~---G~i~~~~~~~ 72 (76)
.+..+++++ +.+.+|++++|+|+||+|||||+++|+++. .++. |.|.+++.++
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~-~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS-EADVFVIGLIGERGREV 192 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC-CCCeEEEEEEeeCCccH
Confidence 346899999 999999999999999999999999999995 3444 6677776654
No 390
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.82 E-value=9.3e-09 Score=67.99 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=29.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
|++++|+||||||||||+++|++... + .+.+.+..++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-T---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-C---eEEEcCEECC
Confidence 78999999999999999999999853 2 4666665554
No 391
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=5.4e-09 Score=72.02 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=41.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
...+.++++|.+.+|++++|.||||+||||+|++|++....+..|...+
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3578999999999999999999999999999999999543445565443
No 392
>KOG0062|consensus
Probab=98.78 E-value=4.7e-09 Score=80.29 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=37.0
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
++++.+|++-++.+..|+.+||+|+||+|||||||+|+.
T Consensus 90 ~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 90 YGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 467899999999999999999999999999999999987
No 393
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.78 E-value=1.1e-08 Score=72.32 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=35.1
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.-++|+||+|||||||+++|+|++ .+..|++.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEee
Confidence 467999999999999999999997 478999999998874
No 394
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.78 E-value=8.1e-09 Score=77.33 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=43.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+..+++++ |.+.+|++++|+|+||+|||||+++|+++. +++.|.+.+.|
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~~~gvI~~~G 193 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-SADLNVIALIG 193 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEEe
Confidence 46789999 999999999999999999999999999996 56788887743
No 395
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.77 E-value=2.4e-08 Score=75.17 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=42.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
+..+++.++ .+.+|+.++|+|||||||||||++|+++. .++.|.+.+.
T Consensus 152 Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~pd~gvv~li 199 (450)
T PRK06002 152 GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-AFDTVVIALV 199 (450)
T ss_pred CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCeeeeeec
Confidence 467888885 99999999999999999999999999996 4678877764
No 396
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.77 E-value=6.1e-09 Score=70.24 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=27.7
Q ss_pred eeeEEEEe-CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 24 KSVSGRFR-AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 24 ~~isl~i~-~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.+++|... +|++++|+|||||||||||++|++.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheee
Confidence 55666543 5889999999999999999999964
No 397
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.76 E-value=6.2e-09 Score=71.62 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..+++|+||||||||||+++|++++.+...|++.+.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~ 62 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL 62 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence 55999999999999999999999974333456665543
No 398
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.75 E-value=8.9e-09 Score=77.14 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=37.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
.+..+++++ |.+.+|++++|+|+||+|||||+++|+++..
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 457899999 9999999999999999999999999999964
No 399
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.75 E-value=1.1e-08 Score=67.79 Aligned_cols=27 Identities=44% Similarity=0.708 Sum_probs=25.5
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++|++++|+||||||||||+++|++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999985
No 400
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.75 E-value=8.3e-09 Score=72.65 Aligned_cols=34 Identities=38% Similarity=0.534 Sum_probs=31.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHH
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i 53 (76)
..-|+++++.|+.|++++|.|+||||||||++.+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 4578999999999999999999999999999865
No 401
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.74 E-value=1.8e-08 Score=57.61 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=28.9
Q ss_pred EeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 23 LKSVSGRFRA-GELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 23 l~~isl~i~~-g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
+++.++++.+ |+++.|.|||||||||+|.+|.-++.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4445667775 46999999999999999999877753
No 402
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.73 E-value=1.6e-08 Score=67.12 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+|++++|+|+||||||||+++|+++.. + +++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcc
Confidence 589999999999999999999999964 2 4566654
No 403
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.72 E-value=8.8e-09 Score=69.12 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=25.9
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
++|++++|+||||||||||++.|+++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6789999999999999999999999863
No 404
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.71 E-value=3.8e-08 Score=71.47 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
.+..+++.+ |.+.+|+.++|+|+||+|||||+++|+++.. ++.+.+..
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~~vi~~ 102 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-ADVNVIAL 102 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEE
Confidence 347899999 9999999999999999999999999999964 55665544
No 405
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.70 E-value=2.3e-08 Score=67.49 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=29.4
Q ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh----CCCcCCCcceE
Q psy12072 26 VSGRFRAGELSAILGPSGAGKSSLLNVIS----GYEKNEKEEEK 65 (76)
Q Consensus 26 isl~i~~g~~~~liG~sGsGKSTll~~i~----gl~~~~~~G~i 65 (76)
.++++.+| +++|+|||||||||||++|. |.. ++..+.+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~ 57 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGG 57 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-Ccccccc
Confidence 34566677 99999999999999999994 885 4445533
No 406
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.68 E-value=2e-08 Score=68.49 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=33.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
...+.+|++++..+ ++++|+||||+||||+||+|+++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 45689999999887 99999999999999999999753
No 407
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.68 E-value=3.8e-08 Score=73.78 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=43.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+..+++++ |.+.+|+.++|+|+||+|||||+++|+++. .++.+.+.+.|
T Consensus 141 tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~-~~d~~vi~~iG 190 (433)
T PRK07594 141 TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAP-DADSNVLVLIG 190 (433)
T ss_pred CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCC-CCCEEEEEEEC
Confidence 357899999 999999999999999999999999999996 46677665544
No 408
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.66 E-value=5.1e-08 Score=73.22 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=43.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+..+++++ |.+.+|++++|+|+||+|||||+++|+++. .++.|.+.+.|
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~d~~vi~~iG 198 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT-QCDVNVIALIG 198 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCeEEEEEEc
Confidence 457899999 999999999999999999999999999996 45677776655
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.66 E-value=5.5e-08 Score=66.65 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=33.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
...+.+|++++..+++++.|.||||+||||+|+.|+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 457899999999999999999999999999999864
No 410
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.62 E-value=5.1e-08 Score=72.69 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=42.4
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
.+..+++++ |.+.+|+.++|+|+||+|||||+++|+++. .++.+.+..
T Consensus 131 tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~ 178 (422)
T TIGR02546 131 TGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA-SADVNVIAL 178 (422)
T ss_pred CCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEE
Confidence 357899999 999999999999999999999999999996 466776655
No 411
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.61 E-value=3e-08 Score=70.64 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=36.0
Q ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 26 VSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 26 isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
+++.++.++.++|+||+|||||||+++|+++. ++..+.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEc
Confidence 45678899999999999999999999999996 5667777664
No 412
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.61 E-value=9.5e-08 Score=71.32 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=43.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
.+..+++ .+|.+.+|+.++|+|+||+|||||+++|+++. .++.|.+.+.|+
T Consensus 126 tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~-~~~~gvi~~iGe 176 (418)
T TIGR03498 126 TGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNT-DADVVVIALVGE 176 (418)
T ss_pred CccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEEEee
Confidence 3456775 69999999999999999999999999999996 467887776654
No 413
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.60 E-value=1.3e-07 Score=70.45 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=43.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
+..+++++ |.+.+|+.++|+|++|+|||||+++|++.. +++.|.+...|+
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~-~~~~gvi~~~Ge 173 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA-KADINVIALIGE 173 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCeEEEEEEcc
Confidence 46799999 999999999999999999999999999996 467777765553
No 414
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.60 E-value=6.2e-08 Score=62.68 Aligned_cols=34 Identities=38% Similarity=0.633 Sum_probs=27.1
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++++++.+.+| +++|.||||+||||++.+|.-.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 47778888776 99999999999999999886553
No 415
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.59 E-value=9e-08 Score=71.78 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=40.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
+..+++.+ |.+.+|+.++|+|+||+|||||+++|+++. +++.+.+..
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~ 196 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-EADVNVIAL 196 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCEEEEEE
Confidence 46899999 999999999999999999999999999996 455665544
No 416
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=9.1e-08 Score=72.17 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=44.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKE---EEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~---G~i~~~~~~~~ 73 (76)
+..+++.+ |.+.+|++++|+|+||+|||||+++|+++. +++. |.|.+.+.++.
T Consensus 162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~-~~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-QADVIVVGLIGERGREVK 217 (455)
T ss_pred cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCC-CCCEEEEEEEEECCeEHH
Confidence 45677666 999999999999999999999999999996 4554 77777777654
No 417
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.56 E-value=6.9e-08 Score=64.46 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=35.6
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++.+++|+|++|||||||.+.|++.+.+...|.+++++.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 6788999999999999999999999764334568888887653
No 418
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.56 E-value=5.3e-08 Score=66.39 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=28.5
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcce
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEE 64 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~ 64 (76)
.+..+++|.||||||||||++.|++++. +..|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCC
Confidence 4567999999999999999999999974 56776
No 419
>PLN02796 D-glycerate 3-kinase
Probab=98.54 E-value=1.5e-08 Score=74.17 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=41.2
Q ss_pred eEEeeeEEEE---eCCCE-----EEEECCCCCCHHHHHHHHhCCCcCC--CcceEEECCEecc
Q psy12072 21 TILKSVSGRF---RAGEL-----SAILGPSGAGKSSLLNVISGYEKNE--KEEEKKKKKKEKE 73 (76)
Q Consensus 21 ~~l~~isl~i---~~g~~-----~~liG~sGsGKSTll~~i~gl~~~~--~~G~i~~~~~~~~ 73 (76)
.+++++++.+ ++|+. ++|+|++|||||||++.|.++..+. ..|.+.+++..++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 4666777766 45665 9999999999999999999997432 3578888887654
No 420
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.54 E-value=1.2e-07 Score=71.37 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=40.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
....+++.+ |.+.+|+.++|+|+||+|||||+++|+++.++.+.+.+.+
T Consensus 150 TGi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~l 198 (442)
T PRK06315 150 TGVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL 198 (442)
T ss_pred ceEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEE
Confidence 346799998 9999999999999999999999999999963334455554
No 421
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.54 E-value=1.3e-07 Score=61.53 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
|++++|+|||||||||+++.|+..+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999985
No 422
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.53 E-value=7.1e-08 Score=73.48 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+...+++.+++.+..|+.+.|+||+|+|||||++.|.|++ ++.+|+..+..
T Consensus 195 Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gll-pp~~g~e~le~ 245 (506)
T PRK09862 195 GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLL-PDLSNEEALES 245 (506)
T ss_pred CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccC-CCCCCcEEEec
Confidence 3456888999999999999999999999999999999997 56788776654
No 423
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=2e-07 Score=70.32 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=37.2
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
.+..+++.+ |.+.+|+.++|+|+||+|||||+++|+++..
T Consensus 154 TGi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 154 VGIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred cceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999 9999999999999999999999999999853
No 424
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.51 E-value=2.6e-07 Score=68.80 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=39.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
+..+++.+ |.+.+|++++|+|+||+|||||+++|+++.. ++.+.+.
T Consensus 124 Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-~~~~vi~ 169 (411)
T TIGR03496 124 GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-ADVVVVG 169 (411)
T ss_pred eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEE
Confidence 46789888 9999999999999999999999999999964 5555443
No 425
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=1e-07 Score=76.69 Aligned_cols=31 Identities=39% Similarity=0.593 Sum_probs=29.5
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHH
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLN 51 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~ 51 (76)
..|++++|+|++|++++|+|+||||||||++
T Consensus 621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 3689999999999999999999999999997
No 426
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.51 E-value=9e-08 Score=65.91 Aligned_cols=32 Identities=38% Similarity=0.627 Sum_probs=25.9
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
.+++|+|||||||||||++|+++.. ++.|++.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~-~~~~~~r 54 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG-EKSSHLR 54 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCccccc
Confidence 4999999999999999999998864 3344443
No 427
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.49 E-value=3.9e-07 Score=69.49 Aligned_cols=51 Identities=29% Similarity=0.345 Sum_probs=47.8
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|+||++.+||+++|.|--|||+|=|+++|.|.. ++.+|+|.++|+++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~ 324 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVR 324 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEcc
Confidence 689999999999999999999999999999999985 678999999999775
No 428
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.49 E-value=2.1e-07 Score=70.01 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=35.6
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+..+++.+ |.+.+|+.++|+|+||+||||||++|++..
T Consensus 148 TGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 148 VGVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred ccceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence 346788888 999999999999999999999999999985
No 429
>PRK05922 type III secretion system ATPase; Validated
Probab=98.49 E-value=3.5e-07 Score=68.71 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=39.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
.+.++++.+ +.+.+|+.++|+|+||+|||||+++|++.. +++.|.+.
T Consensus 143 TGIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~-~~d~gvi~ 189 (434)
T PRK05922 143 TGIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGS-KSTINVIA 189 (434)
T ss_pred CCceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccC-CCCceEEE
Confidence 346688776 999999999999999999999999999995 45666653
No 430
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.49 E-value=1.4e-07 Score=61.29 Aligned_cols=25 Identities=44% Similarity=0.683 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
|++++|+||||||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6899999999999999999999974
No 431
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.48 E-value=2.2e-07 Score=62.54 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=28.1
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.++++++.+.+| +.+|+||||+||||||.+|.-
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~ 43 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTI 43 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHH
Confidence 446777888776 889999999999999999874
No 432
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.48 E-value=4.7e-07 Score=64.18 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=45.3
Q ss_pred EEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 5 THVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
..+..+.+.+.. +...+++.+|+++.+||+-+|+|.||||||-..++|+|..+
T Consensus 6 IrnL~IE~~Tsq-G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 6 IRNLTIEFKTSQ-GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred ccceEEEEecCC-CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence 345556666543 67889999999999999999999999999999999999953
No 433
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.47 E-value=2.9e-07 Score=78.03 Aligned_cols=31 Identities=42% Similarity=0.613 Sum_probs=29.9
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHH
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLN 51 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~ 51 (76)
..|+++||+|++|++++|.|+||||||||++
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 4799999999999999999999999999999
No 434
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.46 E-value=3.6e-07 Score=69.76 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh---CCCcCCCcceEE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS---GYEKNEKEEEKK 66 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~---gl~~~~~~G~i~ 66 (76)
+..++++|+.+.+ ++.+++|.|||||||||+.+.|+ |+. ..+.|.++
T Consensus 270 g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~-~~d~g~~Y 319 (512)
T PRK13477 270 GSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLL-YLDTGAMY 319 (512)
T ss_pred CCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCe-EecCCcee
Confidence 5688999999988 88999999999999999999999 553 34556554
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.46 E-value=6e-07 Score=61.14 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=25.2
Q ss_pred eEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHh
Q psy12072 21 TILKSVSGRFRAG--ELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 21 ~~l~~isl~i~~g--~~~~liG~sGsGKSTll~~i~ 54 (76)
.+-+|++ +.++ .+++|.||||+|||||||.|+
T Consensus 17 ~vpnd~~--l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 17 FVPNDTE--IGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEcceEE--ecCCCceEEEEECCCCCChHHHHHHHH
Confidence 3444444 4444 789999999999999999998
No 436
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=4.9e-07 Score=67.86 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=42.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
+..+++.+ |.+.+|+.++|+|++|+|||||+++|++.. +++.|.+.+.|+
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGe 192 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGE 192 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCC
Confidence 35788885 999999999999999999999999999996 467887766554
No 437
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.44 E-value=2.2e-07 Score=70.92 Aligned_cols=43 Identities=28% Similarity=0.503 Sum_probs=34.2
Q ss_pred eEEeeeEEEE-----eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcce
Q psy12072 21 TILKSVSGRF-----RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEE 64 (76)
Q Consensus 21 ~~l~~isl~i-----~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~ 64 (76)
..+.++.|++ ..||+++++||||-|||||.++|+|.++ |++|.
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~ 397 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGS 397 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-CCCCC
Confidence 3455666655 4567889999999999999999999975 67774
No 438
>PRK01889 GTPase RsgA; Reviewed
Probab=98.43 E-value=2.6e-07 Score=67.29 Aligned_cols=46 Identities=33% Similarity=0.541 Sum_probs=39.2
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
++.+.-.+++|+.++|+|+||+|||||++.|+|.. ++..|++.+++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~-~~~~G~i~~~~ 230 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEE-VQKTGAVREDD 230 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhc-ccceeeEEECC
Confidence 44555567889999999999999999999999996 47899998865
No 439
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.42 E-value=4.9e-07 Score=67.98 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=37.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
.+..+++++ |.+.+|+.++|+|+||+|||||+++|++...
T Consensus 148 TGi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~ 187 (439)
T PRK06936 148 LGVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE 187 (439)
T ss_pred CCcceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC
Confidence 457799999 9999999999999999999999999999963
No 440
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.41 E-value=2.7e-07 Score=61.94 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=27.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
++.|.||+||||||+++.+.+...++..+.+...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 688999999999999999888864444566655443
No 441
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.41 E-value=5e-07 Score=75.60 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=39.9
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
.+.+..|.+.++ +++|+|+||+||||+|++|++++. +..|.+.+++..
T Consensus 17 ~~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-~~~~~~~f~~~~ 64 (1486)
T PRK04863 17 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTT 64 (1486)
T ss_pred CccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-CCCCeEEECCcc
Confidence 455667888886 999999999999999999999975 567888887653
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=4.4e-07 Score=74.75 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=30.3
Q ss_pred CEEEEECCCCCCHHHHHHHH----hCCCcCCCcceEEECCEe
Q psy12072 34 ELSAILGPSGAGKSSLLNVI----SGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i----~gl~~~~~~G~i~~~~~~ 71 (76)
.+++|+|||||||||++.+| .|..+|...|.+++.+..
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~ 70 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPK 70 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCC
Confidence 49999999999999999999 588644346887776543
No 443
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.40 E-value=3.4e-07 Score=68.71 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=40.9
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..+++++ +.+.+|++++|+|+||+|||||+++|++.. ..+.+.+...|+
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~-~~~v~vi~~iGe 193 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGC-LAPIKVVALIGE 193 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhcc-CCCEEEEEeeCc
Confidence 5588999 999999999999999999999999999885 345666655443
No 444
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.40 E-value=2.5e-07 Score=60.14 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=29.1
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+|+++++..++.++ +|+|++|+|||||++.+.+-
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcC
Confidence 46778888777666 99999999999999999983
No 445
>KOG0065|consensus
Probab=98.40 E-value=5.6e-07 Score=74.52 Aligned_cols=55 Identities=33% Similarity=0.572 Sum_probs=47.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE--KEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~--~~G~i~~~~~~~~ 73 (76)
...+++|+++.+++|+.+.++||.||||||||++++|-+... ..|+|.++|.+.+
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~ 183 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLK 183 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccc
Confidence 357999999999999999999999999999999999996422 3568999997654
No 446
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.40 E-value=3.3e-07 Score=73.97 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=30.9
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHH
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i 53 (76)
..|++++|+|++|++++|.|+||||||||++.+
T Consensus 623 ~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 623 NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 358999999999999999999999999999876
No 447
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.39 E-value=2e-07 Score=66.72 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEE
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKK 67 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~ 67 (76)
.-.++||.||||||||||+++|.++... +..|.+.+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~v 97 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVEL 97 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEE
Confidence 3458999999999999999999998641 34666544
No 448
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.38 E-value=1.3e-06 Score=51.92 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
.+..+.|+||+|+||||+++.|+........+-++++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 357889999999999999999999964321145555544
No 449
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.38 E-value=2.2e-07 Score=61.56 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++|.||+|||||||.++|+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999985
No 450
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.37 E-value=3.8e-07 Score=64.44 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
+++|+|+||||||||++.|+++.. +..+.++..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-SDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-CCceEEEEC
Confidence 479999999999999999999974 445655443
No 451
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.37 E-value=1.2e-06 Score=65.56 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=31.9
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
|+.+.+.+|+.++|+||+|+|||||++.|+..+
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 999999999999999999999999999999975
No 452
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.37 E-value=3.6e-07 Score=77.43 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=37.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
...|++++|++++|++++|+|+||||||||+..+ +. + .|.+.+..
T Consensus 948 ~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~--~-~G~~~~~e 992 (1809)
T PRK00635 948 QHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LY--A-AGNIAYAE 992 (1809)
T ss_pred cccccceeEEecCCcEEEEECCCCCChhHHHHHH--HH--h-hccEeeec
Confidence 3469999999999999999999999999988766 42 2 78787654
No 453
>KOG0066|consensus
Probab=98.37 E-value=2.8e-07 Score=70.75 Aligned_cols=48 Identities=29% Similarity=0.457 Sum_probs=42.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
+..+++..++|-|.-...++|+||||.||||||++|.|-+. |..|+..
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~R 645 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELR 645 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-CCcchhh
Confidence 45789999999999999999999999999999999999975 5566654
No 454
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.37 E-value=7e-07 Score=61.40 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=35.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
...+-+|++|..+++++++|.|||++||||+++.++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 46789999999999999999999999999999999876
No 455
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.35 E-value=2.5e-07 Score=63.32 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEE
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKK 67 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~ 67 (76)
+++|.|+||||||||++.|++++.+ +..+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999998642 13444443
No 456
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.35 E-value=2.6e-06 Score=64.88 Aligned_cols=53 Identities=36% Similarity=0.452 Sum_probs=48.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
....+++|||++++||+++|.|-.|-|-+-|+.+|+|+.+ +.+|+|.++|+++
T Consensus 270 ~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~~~G~I~l~G~~v 322 (501)
T COG3845 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-PASGRILLNGKDV 322 (501)
T ss_pred CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-cCCceEEECCEec
Confidence 3678999999999999999999999999999999999964 5569999999986
No 457
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.34 E-value=2.3e-07 Score=60.49 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=33.5
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
.++|.++.+.|++||||||+.+.|+.....+..+.+++++..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 467889999999999999999999887644445677776543
No 458
>PRK00098 GTPase RsgA; Reviewed
Probab=98.34 E-value=7.4e-07 Score=63.33 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
+|++++++|+||+|||||+|.|.|.. ....|++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc-CCCCcceec
Confidence 58899999999999999999999985 456787764
No 459
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.32 E-value=3e-07 Score=69.84 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=44.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+...+.+.+++.+..|+.+.|+||+|+|||||++.|.++. ++..|++.+....
T Consensus 196 Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~ll-p~~~~~~~le~~~ 248 (499)
T TIGR00368 196 GQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGIL-PPLTNEEAIETAR 248 (499)
T ss_pred CcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhccc-CCCCCcEEEeccc
Confidence 4556788999999999999999999999999999999997 5667777665443
No 460
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.31 E-value=1.4e-06 Score=55.48 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCc---CCCcc----eEEECCEe
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEK---NEKEE----EKKKKKKE 71 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~---~~~~G----~i~~~~~~ 71 (76)
.++|+|++|+|||||++.+.+... .++.| .+.+++..
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~ 59 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFK 59 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEE
Confidence 589999999999999999999731 24566 55555543
No 461
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.30 E-value=1.2e-06 Score=56.95 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=27.8
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
....++.+.++.++.|+|||||||||+++.+....
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555666666799999999999999999976553
No 462
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.29 E-value=8.3e-07 Score=62.81 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=32.8
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
+.+...++ +++++++|+||+|||||+|.|.|.. .++.|++..
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~ 194 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDL-DLATGEISE 194 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchh-hccccceec
Confidence 33444454 4899999999999999999999996 456777754
No 463
>PRK06820 type III secretion system ATPase; Validated
Probab=98.29 E-value=1.7e-06 Score=65.09 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=38.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKE 62 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~ 62 (76)
.+..+++.+ +.+.+|+.++|+|+||+|||||+++|++.. +++.
T Consensus 149 TGi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~-~~dv 191 (440)
T PRK06820 149 TGIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADS-AADV 191 (440)
T ss_pred CCCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccC-CCCE
Confidence 347899999 999999999999999999999999999985 3444
No 464
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.28 E-value=5.1e-07 Score=60.34 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++.+++|.|+||||||||.+.|++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999986
No 465
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.27 E-value=1.2e-06 Score=58.36 Aligned_cols=32 Identities=41% Similarity=0.591 Sum_probs=25.5
Q ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 36 SAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
++|+|++|+|||||+|.|.|.. .+..|.+..+
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~-~~~~~~~~~~ 35 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVG-HEEEGAAPTG 35 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccC-CCCCCccccC
Confidence 7899999999999999999985 3445555443
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.26 E-value=1.1e-06 Score=63.56 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=31.9
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
.++.++.|.||+||||||+|+.+.+...++..+.|..-+.+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 46789999999999999999999987543446777654443
No 467
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.26 E-value=1e-06 Score=64.51 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=25.0
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++.++.|+||+||||||+|+++.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999999885
No 468
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.24 E-value=7e-07 Score=58.64 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=33.9
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
..++|++++|.|++||||||+.+.|.+....+..+.+++++..+
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 45789999999999999999999999996322123567776554
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.24 E-value=6.2e-07 Score=64.68 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=33.6
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
.++++++|+||||+||||++..|++... +..++|.+-+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecC
Confidence 5789999999999999999999999964 556788775544
No 470
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.23 E-value=6.8e-07 Score=66.38 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
-+.+.+.++++.+++.+.|+||||+||||+|.+|.--+.+.-.+.+++..+.+.
T Consensus 11 fr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~~ksl~ 64 (440)
T COG3950 11 FRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSLK 64 (440)
T ss_pred hhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhccceeecccchhh
Confidence 356778899999999999999999999999998876655555567776555443
No 471
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.23 E-value=6.2e-07 Score=58.16 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=26.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHh---CCCcCCCcceE
Q psy12072 33 GELSAILGPSGAGKSSLLNVIS---GYEKNEKEEEK 65 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~---gl~~~~~~G~i 65 (76)
-.+++|+||+||||||+.+.|+ |+. ....|++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~-~~~~g~~ 37 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFT-HLSTGDL 37 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCc-EEeHHHH
Confidence 4589999999999999999999 874 4455554
No 472
>KOG0066|consensus
Probab=98.23 E-value=1.9e-06 Score=66.29 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcceEEECCEe
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE-KNEKEEEKKKKKKE 71 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~-~~~~~G~i~~~~~~ 71 (76)
.++.++.+.++.|-.|+.++|+||||-||||||+.|+..- .-|..=++++..+.
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQE 329 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQE 329 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeee
Confidence 3467999999999999999999999999999999998752 11234455554443
No 473
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=2.1e-06 Score=60.08 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=28.2
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.++++.+.+.+| +.+|+||||||||++|.+|.-
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~ 43 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALSL 43 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 557778888766 899999999999999998763
No 474
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.22 E-value=1.5e-06 Score=57.71 Aligned_cols=33 Identities=45% Similarity=0.612 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK 65 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i 65 (76)
++++++++|+||+|||||+|.|.+-.. ...|.|
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~-~~t~~i 66 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK-QKTGEI 66 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-----S--
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc-hhhhhh
Confidence 458999999999999999999999843 234444
No 475
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.22 E-value=1.2e-06 Score=69.51 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=29.4
Q ss_pred eeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 25 SVSGRFRAG-ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 25 ~isl~i~~g-~~~~liG~sGsGKSTll~~i~gl 56 (76)
++++.+..+ ++++|.||||+||||||+.|++.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 378888877 89999999999999999999988
No 476
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.21 E-value=1.3e-06 Score=69.08 Aligned_cols=29 Identities=34% Similarity=0.778 Sum_probs=22.8
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHH---HhCC
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNV---ISGY 56 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~---i~gl 56 (76)
++.+.+| +++|+|||||||||+|.+ +.|.
T Consensus 18 ~i~f~~~-~~~i~G~NGsGKS~ll~ai~~~lg~ 49 (1179)
T TIGR02168 18 TINFDKG-ITGIVGPNGCGKSNIVDAIRWVLGE 49 (1179)
T ss_pred eEEecCC-cEEEECCCCCChhHHHHHHHHHHcC
Confidence 4455554 999999999999999954 6665
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.20 E-value=8.3e-07 Score=67.44 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=31.7
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++++.++.+..|.+++++||||+||||++..|++..
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 456677778889999999999999999999999875
No 478
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=1.1e-06 Score=65.70 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=24.8
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+..|++++|+||||+||||+++.|++.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999988875
No 479
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.19 E-value=1.2e-06 Score=56.95 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=30.8
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EECCE
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK-KKKKK 70 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i-~~~~~ 70 (76)
++|++++|+|++||||||+.+.|++... ...+.+ ++++.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~-~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR-EAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEcCc
Confidence 5789999999999999999999999864 334444 45554
No 480
>PRK00064 recF recombination protein F; Reviewed
Probab=98.18 E-value=2e-06 Score=62.66 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=30.2
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-+.++++.+.+| +.+|+||||+||||+|.+|..+.
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhC
Confidence 456788888887 99999999999999999998763
No 481
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.18 E-value=1.6e-06 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|.|++||||||+.+.|+-.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 482
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.17 E-value=1.6e-06 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q psy12072 36 SAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~gl~ 57 (76)
++|+|++|+|||||++.+.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 5899999999999999999983
No 483
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=2.7e-06 Score=59.41 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=28.3
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+++.++.+.+| +.+|+|||||||||++.+|.-+.
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~ 45 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLA 45 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhc
Confidence 345567777765 78999999999999999987664
No 484
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.16 E-value=1.9e-06 Score=65.04 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=32.3
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEEECCEecc
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYEKNE--KEEEKKKKKKEKE 73 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~~~~--~~G~i~~~~~~~~ 73 (76)
=+++|.|++|||||||.+.|.++..+. ..+.|.+++..++
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt 254 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT 254 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence 378999999999999999999986422 2678888887664
No 485
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=1.3e-06 Score=69.47 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=32.6
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++++.++.+++|++++++||||+||||++..|++..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 567778888889999999999999999999999985
No 486
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.16 E-value=2.7e-06 Score=66.54 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+++|.||||||||||++.|+++. +..|.|.+++..
T Consensus 67 IIGIaGpSGSGKTTLAk~LaglL--p~vgvIsmDdy~ 101 (656)
T PLN02318 67 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDNYN 101 (656)
T ss_pred EEEEECCCCCcHHHHHHHHHhhC--CCcEEEEEccee
Confidence 78999999999999999999995 357888888754
No 487
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.15 E-value=2.6e-06 Score=56.58 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=23.5
Q ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 26 VSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 26 isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.++...++.+.+|+||||+|||++|.+|.-.
T Consensus 15 ~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~ 45 (178)
T cd03239 15 ETVVGGSNSFNAIVGPNGSGKSNIVDAICFV 45 (178)
T ss_pred CEEecCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344444449999999999999999987543
No 488
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.14 E-value=4.4e-07 Score=58.25 Aligned_cols=22 Identities=41% Similarity=0.773 Sum_probs=0.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+.+|+|+|||||||+|++|..+
T Consensus 1 i~viiG~N~sGKS~il~ai~~~ 22 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFL 22 (303)
T ss_dssp ----------------------
T ss_pred CCcccccccccccccccccccc
Confidence 4689999999999999999876
No 489
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.13 E-value=3.4e-06 Score=57.42 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=26.7
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+.++++.+.+| +.+|+||||+||||||.+|.-..
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l 47 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGL 47 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 35566666544 88999999999999999886653
No 490
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=2e-06 Score=63.60 Aligned_cols=37 Identities=24% Similarity=0.470 Sum_probs=33.2
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..++++.++.+..|++++|+||+|+||||++..|+..
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567778889999999999999999999999999875
No 491
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.09 E-value=2.6e-06 Score=54.33 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++|+||+|||||||++.|+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999984
No 492
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.08 E-value=3.8e-06 Score=56.27 Aligned_cols=29 Identities=41% Similarity=0.740 Sum_probs=23.6
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHH
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVI 53 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i 53 (76)
+.+.+.+.+ .+++|+||||+|||+++.+|
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi 44 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAI 44 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHH
Confidence 344555554 49999999999999999999
No 493
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.08 E-value=3.2e-06 Score=51.43 Aligned_cols=21 Identities=43% Similarity=0.759 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy12072 36 SAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~gl 56 (76)
++|+|++|+|||||++.|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999985
No 494
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=4.5e-06 Score=61.07 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=30.1
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.-++++++++.++ +.+|+||||+|||++|.+|..+
T Consensus 12 R~~~~~~l~~~~~-~nvi~G~NGsGKT~lLeAi~~l 46 (365)
T TIGR00611 12 RNYDAVDLELSPG-VNVIVGPNGQGKTNLLEAIYYL 46 (365)
T ss_pred cceeeeEEEECCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 4567788888887 8899999999999999999755
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.07 E-value=3.2e-06 Score=52.38 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHh--CCC
Q psy12072 36 SAILGPSGAGKSSLLNVIS--GYE 57 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~--gl~ 57 (76)
++|+|++|+|||||++.|. +..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~ 25 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL 25 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce
Confidence 6899999999999999999 553
No 496
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=6.2e-06 Score=62.18 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=31.6
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
|.-|.+.+|+.++|+|+||+|||||+++|++...
T Consensus 150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 6678999999999999999999999999999964
No 497
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.07 E-value=4.4e-06 Score=67.86 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=28.0
Q ss_pred eeEEEE---eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 25 SVSGRF---RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 25 ~isl~i---~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.|+|+. ..+.+++|+|||||||||+|.+|+..+
T Consensus 19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aL 54 (1047)
T PRK10246 19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLAL 54 (1047)
T ss_pred eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 588884 458899999999999999999998543
No 498
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.06 E-value=2e-06 Score=61.10 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=34.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..+++++++...++.+++|+|++|||||||++.++...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45889999999999999999999999999999998864
No 499
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.06 E-value=4e-06 Score=56.53 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+.+++|+||||||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999999999754
No 500
>PRK02224 chromosome segregation protein; Provisional
Probab=98.06 E-value=4.3e-06 Score=65.96 Aligned_cols=29 Identities=38% Similarity=0.556 Sum_probs=23.9
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
+.++.+.+| +++|+|||||||||+|.+|.
T Consensus 16 ~~~~~f~~g-~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 16 DADLRLEDG-VTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445666665 99999999999999998854
Done!