Query psy12072
Match_columns 76
No_of_seqs 128 out of 1298
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 17:57:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 99.8 1.7E-20 5.8E-25 127.5 10.5 69 3-73 2-70 (235)
2 1g6h_A High-affinity branched- 99.8 1.1E-20 3.8E-25 129.7 8.8 55 18-73 18-72 (257)
3 2pcj_A ABC transporter, lipopr 99.8 3.7E-20 1.3E-24 124.9 10.7 65 3-73 5-69 (224)
4 4g1u_C Hemin import ATP-bindin 99.8 5.9E-20 2E-24 127.1 11.2 56 18-74 22-77 (266)
5 1b0u_A Histidine permease; ABC 99.8 7.2E-20 2.4E-24 126.2 10.8 65 3-73 7-71 (262)
6 1ji0_A ABC transporter; ATP bi 99.8 8.7E-20 3E-24 124.2 10.9 54 19-73 18-71 (240)
7 3fvq_A Fe(3+) IONS import ATP- 99.8 7.3E-20 2.5E-24 132.1 10.3 64 3-72 5-68 (359)
8 2olj_A Amino acid ABC transpor 99.8 1.1E-19 3.8E-24 125.8 10.8 65 3-73 25-89 (263)
9 1vpl_A ABC transporter, ATP-bi 99.8 1.4E-19 4.7E-24 124.8 10.8 65 3-73 16-80 (256)
10 3tui_C Methionine import ATP-b 99.8 1.5E-19 5.1E-24 130.9 10.9 69 3-73 25-93 (366)
11 2ff7_A Alpha-hemolysin translo 99.8 1.5E-19 5.1E-24 123.7 10.2 54 19-73 21-74 (247)
12 3gfo_A Cobalt import ATP-bindi 99.8 1.1E-19 3.8E-24 126.6 9.7 54 19-73 20-73 (275)
13 2yyz_A Sugar ABC transporter, 99.8 1.9E-19 6.4E-24 129.7 10.9 65 3-73 4-68 (359)
14 2d2e_A SUFC protein; ABC-ATPas 99.8 1.6E-19 5.5E-24 123.5 9.9 66 3-73 4-70 (250)
15 2ihy_A ABC transporter, ATP-bi 99.8 1.9E-19 6.6E-24 125.3 10.4 54 19-73 33-86 (279)
16 3rlf_A Maltose/maltodextrin im 99.8 2.4E-19 8.2E-24 130.3 11.1 65 3-73 4-68 (381)
17 1v43_A Sugar-binding transport 99.8 2.9E-19 1E-23 129.2 11.1 65 3-73 12-76 (372)
18 1g29_1 MALK, maltose transport 99.8 2.7E-19 9.3E-24 129.2 10.7 65 3-73 4-68 (372)
19 2yz2_A Putative ABC transporte 99.8 4.1E-19 1.4E-23 122.5 11.0 71 2-73 2-72 (266)
20 1sgw_A Putative ABC transporte 99.8 2.3E-19 7.9E-24 121.1 9.4 51 21-72 23-73 (214)
21 2it1_A 362AA long hypothetical 99.8 2.4E-19 8.4E-24 129.2 10.1 65 3-73 4-68 (362)
22 2zu0_C Probable ATP-dependent 99.8 2.9E-19 9.8E-24 123.5 9.8 66 3-73 21-87 (267)
23 1mv5_A LMRA, multidrug resista 99.8 2.6E-19 8.8E-24 121.9 8.8 54 19-73 14-67 (243)
24 2ixe_A Antigen peptide transpo 99.8 5E-19 1.7E-23 122.6 9.2 53 20-73 32-84 (271)
25 1oxx_K GLCV, glucose, ABC tran 99.8 2.3E-19 7.9E-24 128.7 7.5 65 3-73 4-70 (353)
26 2cbz_A Multidrug resistance-as 99.8 3.7E-19 1.3E-23 121.0 7.5 63 3-69 4-66 (237)
27 2pze_A Cystic fibrosis transme 99.8 1.1E-18 3.8E-23 118.0 9.6 50 19-69 20-69 (229)
28 3nh6_A ATP-binding cassette SU 99.8 5.3E-19 1.8E-23 125.0 8.3 55 19-74 66-120 (306)
29 1z47_A CYSA, putative ABC-tran 99.8 8.9E-19 3E-23 126.1 9.4 55 18-73 26-80 (355)
30 3d31_A Sulfate/molybdate ABC t 99.8 1E-18 3.5E-23 125.4 8.0 64 3-73 2-65 (348)
31 2qi9_C Vitamin B12 import ATP- 99.8 1.2E-18 4E-23 119.7 7.9 51 21-73 14-64 (249)
32 2ghi_A Transport protein; mult 99.8 5E-18 1.7E-22 116.8 9.5 52 20-73 33-84 (260)
33 2onk_A Molybdate/tungstate ABC 99.8 4.9E-18 1.7E-22 116.0 9.3 62 3-73 2-63 (240)
34 2pjz_A Hypothetical protein ST 99.7 8E-18 2.7E-22 116.5 9.7 67 3-73 2-68 (263)
35 2nq2_C Hypothetical ABC transp 99.7 8.3E-18 2.9E-22 115.5 9.6 60 3-67 5-64 (253)
36 3gd7_A Fusion complex of cysti 99.7 3.3E-18 1.1E-22 124.3 7.0 54 18-73 32-85 (390)
37 2yl4_A ATP-binding cassette SU 99.7 4.6E-17 1.6E-21 122.0 10.1 68 3-73 342-409 (595)
38 3b5x_A Lipid A export ATP-bind 99.7 3.3E-17 1.1E-21 122.5 8.9 53 20-73 356-408 (582)
39 4a82_A Cystic fibrosis transme 99.7 1.9E-17 6.6E-22 123.8 7.4 55 19-74 353-407 (578)
40 3b60_A Lipid A export ATP-bind 99.7 3.2E-17 1.1E-21 122.5 8.3 54 20-74 356-409 (582)
41 2bbs_A Cystic fibrosis transme 99.7 2.1E-17 7.3E-22 115.7 5.3 49 20-69 51-99 (290)
42 3qf4_B Uncharacterized ABC tra 99.7 3E-17 1E-21 123.3 6.1 55 19-74 367-421 (598)
43 3qf4_A ABC transporter, ATP-bi 99.7 8.2E-17 2.8E-21 120.8 8.0 56 18-74 354-409 (587)
44 4f4c_A Multidrug resistance pr 99.6 6.8E-16 2.3E-20 124.3 8.5 69 3-74 1077-1145(1321)
45 3g5u_A MCG1178, multidrug resi 99.6 1.5E-15 5E-20 122.1 9.3 64 10-74 393-456 (1284)
46 4f4c_A Multidrug resistance pr 99.6 2.8E-15 9.5E-20 120.8 9.2 65 9-74 420-484 (1321)
47 3g5u_A MCG1178, multidrug resi 99.6 2.5E-15 8.6E-20 120.8 5.6 53 20-73 1046-1098(1284)
48 2iw3_A Elongation factor 3A; a 99.6 4.3E-15 1.5E-19 117.9 6.7 49 20-69 686-734 (986)
49 1htw_A HI0065; nucleotide-bind 99.6 1E-16 3.5E-21 103.7 -2.4 52 19-72 19-70 (158)
50 1z6g_A Guanylate kinase; struc 99.5 2.4E-15 8.3E-20 100.3 2.7 48 20-72 10-57 (218)
51 3euj_A Chromosome partition pr 99.5 3.3E-15 1.1E-19 111.2 1.8 52 20-73 17-68 (483)
52 3ozx_A RNAse L inhibitor; ATP 99.5 6E-14 2E-18 105.1 6.5 50 21-71 282-331 (538)
53 1yqt_A RNAse L inhibitor; ATP- 99.4 1.4E-13 4.7E-18 102.9 6.8 46 21-67 300-345 (538)
54 3bk7_A ABC transporter ATP-bin 99.4 1.9E-13 6.4E-18 103.6 5.3 46 21-67 370-415 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.4 2.2E-13 7.7E-18 101.7 4.1 43 21-65 36-78 (538)
56 1tq4_A IIGP1, interferon-induc 99.4 1.9E-14 6.4E-19 105.3 -2.2 53 20-73 36-108 (413)
57 2jeo_A Uridine-cytidine kinase 99.4 2E-13 6.9E-18 91.8 2.8 41 17-57 9-49 (245)
58 3ux8_A Excinuclease ABC, A sub 99.4 4.5E-13 1.5E-17 101.4 4.7 51 20-71 31-109 (670)
59 4gp7_A Metallophosphoesterase; 99.3 6E-13 2E-17 85.5 3.5 27 25-51 1-27 (171)
60 3bk7_A ABC transporter ATP-bin 99.3 6.3E-13 2.1E-17 100.8 4.1 43 21-65 106-148 (607)
61 1znw_A Guanylate kinase, GMP k 99.3 4.3E-13 1.5E-17 88.1 2.7 39 17-57 6-44 (207)
62 2pt7_A CAG-ALFA; ATPase, prote 99.3 5.8E-14 2E-18 99.4 -2.2 48 22-70 160-207 (330)
63 2eyu_A Twitching motility prot 99.3 7.6E-14 2.6E-18 96.1 -1.8 49 21-72 15-64 (261)
64 3b9q_A Chloroplast SRP recepto 99.3 1.8E-13 6.3E-18 96.0 0.1 50 23-73 90-139 (302)
65 2gza_A Type IV secretion syste 99.3 1.5E-13 5.1E-18 98.0 -0.8 46 24-70 166-211 (361)
66 2v9p_A Replication protein E1; 99.3 1.2E-13 4E-18 97.7 -1.5 44 20-67 113-156 (305)
67 3j16_B RLI1P; ribosome recycli 99.3 2.7E-12 9.3E-17 97.4 5.3 44 20-64 360-408 (608)
68 2dpy_A FLII, flagellum-specifi 99.3 3.4E-13 1.2E-17 98.9 -0.1 50 19-70 144-193 (438)
69 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.8E-13 6.3E-18 100.9 -1.6 45 24-69 129-175 (460)
70 2iw3_A Elongation factor 3A; a 99.3 9E-12 3.1E-16 99.0 7.9 38 18-55 446-483 (986)
71 3tr0_A Guanylate kinase, GMP k 99.3 3.1E-12 1.1E-16 82.5 4.0 31 27-57 1-31 (205)
72 2obl_A ESCN; ATPase, hydrolase 99.3 5.5E-13 1.9E-17 95.2 0.5 51 19-71 58-108 (347)
73 3lnc_A Guanylate kinase, GMP k 99.3 1.3E-12 4.6E-17 86.6 2.2 39 19-57 13-52 (231)
74 3j16_B RLI1P; ribosome recycli 99.3 3.6E-12 1.2E-16 96.8 4.7 44 20-65 91-134 (608)
75 1tf7_A KAIC; homohexamer, hexa 99.3 2.4E-13 8.3E-18 100.5 -1.7 53 18-71 23-78 (525)
76 4aby_A DNA repair protein RECN 99.3 9.9E-13 3.4E-17 93.3 1.5 37 20-57 48-84 (415)
77 3ux8_A Excinuclease ABC, A sub 99.2 3.4E-12 1.1E-16 96.7 3.5 35 20-54 335-369 (670)
78 2og2_A Putative signal recogni 99.2 8.4E-13 2.9E-17 95.0 0.2 49 24-73 148-196 (359)
79 3b85_A Phosphate starvation-in 99.2 4.6E-13 1.6E-17 89.6 -1.4 42 19-66 12-53 (208)
80 3ozx_A RNAse L inhibitor; ATP 99.2 1.9E-12 6.6E-17 96.9 1.8 36 29-65 21-56 (538)
81 1zp6_A Hypothetical protein AT 99.2 6.8E-12 2.3E-16 80.3 3.7 41 29-72 5-45 (191)
82 2qm8_A GTPase/ATPase; G protei 99.2 4.4E-13 1.5E-17 95.0 -2.3 53 20-73 42-94 (337)
83 2yhs_A FTSY, cell division pro 99.2 2.3E-12 7.8E-17 96.6 0.4 49 23-72 283-331 (503)
84 1s96_A Guanylate kinase, GMP k 99.2 5E-12 1.7E-16 85.0 1.8 46 26-71 9-55 (219)
85 1u0l_A Probable GTPase ENGC; p 99.2 7.7E-12 2.6E-16 87.0 2.4 46 28-74 164-212 (301)
86 4a74_A DNA repair and recombin 99.2 1.1E-11 3.8E-16 80.7 3.0 43 29-71 21-69 (231)
87 1sq5_A Pantothenate kinase; P- 99.1 1.7E-12 5.8E-17 90.5 -2.5 51 21-71 49-122 (308)
88 3c8u_A Fructokinase; YP_612366 99.1 8.6E-12 2.9E-16 81.9 1.0 43 30-72 19-63 (208)
89 3sop_A Neuronal-specific septi 99.1 1.5E-11 5.2E-16 84.9 2.1 38 35-73 4-41 (270)
90 2ehv_A Hypothetical protein PH 99.1 1.8E-11 6.1E-16 80.6 1.9 41 29-70 26-68 (251)
91 1rj9_A FTSY, signal recognitio 99.1 2.4E-11 8.1E-16 85.4 2.6 41 32-73 101-141 (304)
92 1qhl_A Protein (cell division 99.1 1.2E-12 4.1E-17 89.1 -4.3 44 27-72 22-65 (227)
93 2qag_B Septin-6, protein NEDD5 99.1 1.2E-11 4E-16 91.1 0.2 39 18-57 26-66 (427)
94 2oap_1 GSPE-2, type II secreti 99.1 1.1E-11 3.9E-16 92.3 -1.0 50 20-70 247-296 (511)
95 1cr0_A DNA primase/helicase; R 99.0 1.2E-11 4E-16 84.7 -1.3 48 19-67 21-69 (296)
96 3e70_C DPA, signal recognition 99.0 4.7E-11 1.6E-15 84.8 1.4 43 30-73 126-168 (328)
97 3vaa_A Shikimate kinase, SK; s 99.0 1.9E-10 6.5E-15 74.8 3.7 40 17-56 9-48 (199)
98 1lvg_A Guanylate kinase, GMP k 99.0 5.9E-11 2E-15 77.8 1.1 27 31-57 2-28 (198)
99 2yv5_A YJEQ protein; hydrolase 99.0 2.4E-10 8.3E-15 79.6 4.2 43 29-73 161-206 (302)
100 2vf7_A UVRA2, excinuclease ABC 99.0 8E-11 2.7E-15 92.3 1.8 35 22-56 512-547 (842)
101 2i3b_A HCR-ntpase, human cance 99.0 3.7E-11 1.3E-15 79.3 -0.2 37 33-72 1-37 (189)
102 1t9h_A YLOQ, probable GTPase E 99.0 3.3E-11 1.1E-15 85.2 -0.9 45 28-73 168-215 (307)
103 2qnr_A Septin-2, protein NEDD5 99.0 1.7E-10 5.9E-15 80.4 2.8 47 18-71 9-55 (301)
104 1lw7_A Transcriptional regulat 99.0 1.1E-11 3.7E-16 87.8 -3.4 44 23-67 158-207 (365)
105 1pui_A ENGB, probable GTP-bind 99.0 4.8E-11 1.6E-15 76.8 -0.2 44 21-66 16-63 (210)
106 3szr_A Interferon-induced GTP- 99.0 8.7E-11 3E-15 88.7 1.0 42 28-72 43-84 (608)
107 4eun_A Thermoresistant glucoki 99.0 1.6E-10 5.4E-15 75.3 1.9 48 20-72 16-63 (200)
108 3a00_A Guanylate kinase, GMP k 99.0 1.6E-10 5.6E-15 74.6 1.9 26 33-58 1-26 (186)
109 3aez_A Pantothenate kinase; tr 99.0 9.6E-11 3.3E-15 82.5 0.5 33 30-63 87-119 (312)
110 1p9r_A General secretion pathw 98.9 1.8E-10 6E-15 84.2 1.8 41 31-72 165-205 (418)
111 2j41_A Guanylate kinase; GMP, 98.9 4.5E-10 1.5E-14 72.2 3.5 30 28-57 1-30 (207)
112 3kta_A Chromosome segregation 98.9 4E-10 1.4E-14 71.7 3.2 34 24-58 18-51 (182)
113 1ewq_A DNA mismatch repair pro 98.9 1.7E-10 6E-15 89.5 1.0 44 18-64 564-607 (765)
114 1wb9_A DNA mismatch repair pro 98.9 5.7E-10 2E-14 86.9 3.5 39 18-57 593-631 (800)
115 3thx_A DNA mismatch repair pro 98.9 9.3E-10 3.2E-14 87.0 4.7 35 19-53 648-682 (934)
116 3thx_B DNA mismatch repair pro 98.9 2.1E-10 7.2E-15 90.6 1.0 38 19-56 659-696 (918)
117 2rcn_A Probable GTPase ENGC; Y 98.9 1.2E-09 4.2E-14 78.7 4.8 44 23-68 206-250 (358)
118 2ewv_A Twitching motility prot 98.9 1.6E-10 5.4E-15 82.8 0.2 41 30-71 133-174 (372)
119 3asz_A Uridine kinase; cytidin 98.9 4.3E-10 1.5E-14 73.0 1.9 29 30-58 3-31 (211)
120 1kgd_A CASK, peripheral plasma 98.9 5.6E-10 1.9E-14 71.8 2.4 27 31-57 3-29 (180)
121 2bdt_A BH3686; alpha-beta prot 98.9 2.8E-10 9.7E-15 72.9 0.9 36 33-72 2-37 (189)
122 2w0m_A SSO2452; RECA, SSPF, un 98.9 1.1E-10 3.6E-15 75.7 -1.3 50 19-69 8-58 (235)
123 4e22_A Cytidylate kinase; P-lo 98.9 2.7E-10 9.2E-15 77.1 0.5 41 31-72 25-76 (252)
124 2bbw_A Adenylate kinase 4, AK4 98.8 2.8E-10 9.6E-15 76.1 -0.3 37 32-69 26-65 (246)
125 3jvv_A Twitching mobility prot 98.8 5E-10 1.7E-14 80.2 0.7 40 29-68 119-158 (356)
126 3uie_A Adenylyl-sulfate kinase 98.8 2.7E-10 9.4E-15 74.1 -0.7 52 19-72 11-64 (200)
127 1n0w_A DNA repair protein RAD5 98.8 3E-09 1E-13 69.6 4.3 43 29-71 20-68 (243)
128 2vp4_A Deoxynucleoside kinase; 98.8 1.2E-09 4E-14 72.8 2.3 38 29-71 16-53 (230)
129 3nwj_A ATSK2; P loop, shikimat 98.8 9.2E-11 3.1E-15 80.5 -3.3 39 18-56 30-71 (250)
130 1e69_A Chromosome segregation 98.8 4.3E-09 1.5E-13 73.4 4.8 32 24-56 16-47 (322)
131 2o8b_B DNA mismatch repair pro 98.8 1.7E-09 5.9E-14 86.0 2.6 38 19-57 768-812 (1022)
132 2x8a_A Nuclear valosin-contain 98.8 3.7E-10 1.3E-14 77.7 -1.1 48 20-72 33-80 (274)
133 1nij_A Hypothetical protein YJ 98.8 1.2E-09 4.2E-14 76.4 1.5 40 34-73 5-51 (318)
134 2ygr_A Uvrabc system protein A 98.8 2.9E-09 1E-13 84.8 3.6 32 22-53 657-688 (993)
135 2f1r_A Molybdopterin-guanine d 98.8 5.8E-10 2E-14 72.7 -0.7 37 34-71 3-42 (171)
136 1udx_A The GTP-binding protein 98.8 5.7E-09 2E-13 76.2 4.3 35 23-57 147-181 (416)
137 1ye8_A Protein THEP1, hypothet 98.8 2.7E-09 9.2E-14 69.5 2.2 23 35-57 2-24 (178)
138 2qag_C Septin-7; cell cycle, c 98.7 4.1E-09 1.4E-13 77.0 3.2 36 17-58 21-56 (418)
139 2r6f_A Excinuclease ABC subuni 98.7 2.9E-09 1E-13 84.7 2.5 33 22-54 639-671 (972)
140 3pih_A Uvrabc system protein A 98.7 9.5E-09 3.3E-13 81.3 5.1 30 21-50 598-627 (916)
141 3qf7_A RAD50; ABC-ATPase, ATPa 98.7 8.9E-09 3E-13 73.4 4.3 32 22-54 13-44 (365)
142 3tau_A Guanylate kinase, GMP k 98.7 7.9E-09 2.7E-13 67.8 3.5 28 31-58 6-33 (208)
143 2o5v_A DNA replication and rep 98.7 4.3E-09 1.5E-13 75.6 2.3 34 21-55 15-48 (359)
144 1oix_A RAS-related protein RAB 98.7 1.3E-08 4.6E-13 65.2 4.0 38 35-72 31-78 (191)
145 1pzn_A RAD51, DNA repair and r 98.7 7.1E-09 2.4E-13 73.6 2.6 51 21-71 118-175 (349)
146 1knq_A Gluconate kinase; ALFA/ 98.7 4.2E-09 1.4E-13 66.6 1.3 36 31-71 6-41 (175)
147 1rz3_A Hypothetical protein rb 98.7 2.4E-09 8.3E-14 69.9 0.0 38 30-68 19-56 (201)
148 2kjq_A DNAA-related protein; s 98.7 5.9E-09 2E-13 66.1 1.6 38 32-71 35-74 (149)
149 1svm_A Large T antigen; AAA+ f 98.6 2.5E-09 8.5E-14 77.3 -0.8 44 20-67 156-199 (377)
150 3ec2_A DNA replication protein 98.6 5.7E-09 2E-13 66.4 0.7 32 27-58 32-63 (180)
151 1iy2_A ATP-dependent metallopr 98.6 1.5E-09 5.2E-14 73.7 -2.3 46 21-71 63-108 (278)
152 1ixz_A ATP-dependent metallopr 98.6 2.6E-09 8.8E-14 71.3 -1.2 46 20-70 38-83 (254)
153 1zu4_A FTSY; GTPase, signal re 98.6 4E-09 1.4E-13 74.5 -0.5 49 23-72 95-143 (320)
154 3cr8_A Sulfate adenylyltranfer 98.6 5.8E-09 2E-13 78.5 -0.3 43 29-72 365-409 (552)
155 1vma_A Cell division protein F 98.6 9.1E-09 3.1E-13 72.4 0.2 47 25-72 96-142 (306)
156 3tqc_A Pantothenate kinase; bi 98.5 5.8E-09 2E-13 74.0 -0.8 44 22-65 75-125 (321)
157 1w1w_A Structural maintenance 98.5 3.4E-08 1.2E-12 71.1 3.1 31 28-58 21-51 (430)
158 2f9l_A RAB11B, member RAS onco 98.5 5.4E-08 1.9E-12 62.4 3.6 38 35-72 7-54 (199)
159 1kag_A SKI, shikimate kinase I 98.5 3.4E-08 1.2E-12 62.0 2.5 26 32-57 3-28 (173)
160 2cvh_A DNA repair and recombin 98.5 3.2E-08 1.1E-12 63.8 2.4 45 21-68 7-52 (220)
161 3k1j_A LON protease, ATP-depen 98.5 5.4E-09 1.8E-13 78.4 -1.6 54 18-71 45-98 (604)
162 1ls1_A Signal recognition part 98.5 1.2E-08 4.2E-13 71.0 0.2 47 24-73 91-137 (295)
163 3ney_A 55 kDa erythrocyte memb 98.5 5E-08 1.7E-12 65.1 2.9 30 28-57 14-43 (197)
164 1f2t_A RAD50 ABC-ATPase; DNA d 98.5 7.5E-08 2.6E-12 60.9 3.5 28 26-54 17-44 (149)
165 3lda_A DNA repair protein RAD5 98.5 1E-07 3.5E-12 69.2 4.3 42 29-71 174-222 (400)
166 2qt1_A Nicotinamide riboside k 98.5 5.9E-08 2E-12 62.9 2.7 30 28-57 16-45 (207)
167 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 9.8E-08 3.4E-12 69.3 4.1 41 29-69 16-67 (392)
168 1nlf_A Regulatory protein REPA 98.5 8.7E-08 3E-12 65.1 3.2 29 29-57 26-54 (279)
169 1in4_A RUVB, holliday junction 98.4 5.3E-09 1.8E-13 73.1 -4.1 40 18-57 29-75 (334)
170 1tf7_A KAIC; homohexamer, hexa 98.4 1.6E-07 5.5E-12 69.3 3.0 40 27-68 275-316 (525)
171 1y63_A LMAJ004144AAA protein; 98.3 2.6E-07 8.8E-12 59.3 3.0 32 25-56 2-33 (184)
172 3qkt_A DNA double-strand break 98.3 4.4E-07 1.5E-11 63.6 4.3 29 25-54 16-44 (339)
173 1jjv_A Dephospho-COA kinase; P 98.3 3.5E-07 1.2E-11 59.0 3.5 22 35-56 4-25 (206)
174 2p67_A LAO/AO transport system 98.3 1.9E-08 6.3E-13 70.9 -2.9 47 20-67 43-89 (341)
175 1cke_A CK, MSSA, protein (cyti 98.3 3.1E-07 1.1E-11 59.8 3.1 35 33-67 5-41 (227)
176 4eaq_A DTMP kinase, thymidylat 98.3 3.3E-07 1.1E-11 61.4 3.2 44 21-66 11-57 (229)
177 3qks_A DNA double-strand break 98.3 4.5E-07 1.6E-11 59.7 3.5 28 26-54 17-44 (203)
178 2qor_A Guanylate kinase; phosp 98.3 3.7E-07 1.3E-11 59.3 2.9 29 29-57 8-36 (204)
179 2pez_A Bifunctional 3'-phospho 98.3 5.5E-07 1.9E-11 57.1 3.4 27 31-57 3-29 (179)
180 2www_A Methylmalonic aciduria 98.3 1.6E-07 5.5E-12 66.5 1.0 35 32-67 73-107 (349)
181 2dr3_A UPF0273 protein PH0284; 98.3 3.6E-07 1.2E-11 59.7 2.5 47 21-68 10-58 (247)
182 3t34_A Dynamin-related protein 98.2 3.7E-07 1.3E-11 64.2 2.3 34 20-56 24-57 (360)
183 2px0_A Flagellar biosynthesis 98.2 3.2E-07 1.1E-11 64.0 1.8 37 31-68 103-140 (296)
184 4ad8_A DNA repair protein RECN 98.2 2E-07 7E-12 68.6 0.6 35 21-56 49-83 (517)
185 1m7g_A Adenylylsulfate kinase; 98.2 1.4E-07 4.8E-12 61.6 -0.4 42 28-70 20-63 (211)
186 1sxj_E Activator 1 40 kDa subu 98.2 3.9E-07 1.3E-11 62.8 1.7 35 36-71 39-74 (354)
187 3m6a_A ATP-dependent protease 98.2 1.1E-07 3.7E-12 70.9 -1.4 46 22-69 98-143 (543)
188 1mky_A Probable GTP-binding pr 98.2 1.8E-06 6.1E-11 62.4 4.9 38 35-72 182-230 (439)
189 2if2_A Dephospho-COA kinase; a 98.2 7.1E-07 2.4E-11 57.4 2.5 22 35-56 3-24 (204)
190 2gj8_A MNME, tRNA modification 98.2 1.1E-06 3.9E-11 55.3 3.1 26 32-57 3-28 (172)
191 1odf_A YGR205W, hypothetical 3 98.1 8.6E-07 3E-11 61.6 2.2 28 31-58 29-56 (290)
192 2qtf_A Protein HFLX, GTP-bindi 98.1 3.3E-06 1.1E-10 60.3 5.0 38 35-72 181-228 (364)
193 2vf7_A UVRA2, excinuclease ABC 98.1 2E-06 6.7E-11 67.7 4.1 29 22-50 25-53 (842)
194 2ffh_A Protein (FFH); SRP54, s 98.1 6.2E-07 2.1E-11 65.8 0.9 46 24-72 91-136 (425)
195 1m2o_B GTP-binding protein SAR 98.1 1.5E-06 5.1E-11 55.4 2.5 36 20-56 11-46 (190)
196 3cm0_A Adenylate kinase; ATP-b 98.1 2E-06 7E-11 54.3 2.9 24 31-54 2-25 (186)
197 2wji_A Ferrous iron transport 98.1 2.7E-06 9.3E-11 52.9 3.4 23 35-57 5-27 (165)
198 3kb2_A SPBC2 prophage-derived 98.1 2.9E-06 9.8E-11 52.6 3.3 22 35-56 3-24 (173)
199 2yvu_A Probable adenylyl-sulfa 98.0 2.9E-06 1E-10 54.0 3.4 36 29-65 9-44 (186)
200 3t61_A Gluconokinase; PSI-biol 98.0 2.6E-06 8.9E-11 54.8 3.0 24 33-56 18-41 (202)
201 1j8m_F SRP54, signal recogniti 98.0 3.4E-07 1.2E-11 63.9 -1.3 46 24-71 89-135 (297)
202 2dhr_A FTSH; AAA+ protein, hex 98.0 5.4E-07 1.8E-11 67.1 -0.3 47 21-72 54-100 (499)
203 1qhx_A CPT, protein (chloramph 98.0 3.9E-06 1.3E-10 52.6 3.7 24 33-56 3-26 (178)
204 1ega_A Protein (GTP-binding pr 98.0 1.5E-06 5.2E-11 60.2 1.9 25 33-57 8-32 (301)
205 3auy_A DNA double-strand break 98.0 4.5E-06 1.5E-10 59.1 4.2 31 23-54 16-46 (371)
206 3hr8_A Protein RECA; alpha and 98.0 1.8E-06 6.3E-11 62.0 1.9 40 29-69 57-97 (356)
207 2zej_A Dardarin, leucine-rich 98.0 4E-06 1.4E-10 52.9 3.2 22 35-56 4-25 (184)
208 1kht_A Adenylate kinase; phosp 98.0 5.2E-06 1.8E-10 52.2 3.6 24 33-56 3-26 (192)
209 2wjg_A FEOB, ferrous iron tran 98.0 4.9E-06 1.7E-10 52.0 3.4 22 35-56 9-30 (188)
210 2ygr_A Uvrabc system protein A 98.0 4.4E-06 1.5E-10 66.8 3.8 29 22-50 35-63 (993)
211 2r6f_A Excinuclease ABC subuni 98.0 4.7E-06 1.6E-10 66.5 3.8 29 22-50 33-61 (972)
212 1q3t_A Cytidylate kinase; nucl 98.0 5.8E-06 2E-10 54.8 3.7 27 29-55 12-38 (236)
213 3lw7_A Adenylate kinase relate 97.9 5.9E-06 2E-10 50.7 3.2 19 35-53 3-21 (179)
214 1sxj_C Activator 1 40 kDa subu 97.9 3.4E-07 1.2E-11 63.5 -2.8 40 18-57 29-70 (340)
215 3pih_A Uvrabc system protein A 97.9 3E-06 1E-10 67.2 2.2 30 21-50 12-41 (916)
216 2rhm_A Putative kinase; P-loop 97.9 5.3E-06 1.8E-10 52.4 2.8 25 31-55 3-27 (193)
217 2v54_A DTMP kinase, thymidylat 97.9 8.8E-06 3E-10 51.9 3.7 26 32-57 3-28 (204)
218 2jaq_A Deoxyguanosine kinase; 97.9 7.6E-06 2.6E-10 51.9 3.3 22 35-56 2-23 (205)
219 1vht_A Dephospho-COA kinase; s 97.9 8.9E-06 3.1E-10 52.9 3.4 24 33-56 4-27 (218)
220 1f6b_A SAR1; gtpases, N-termin 97.9 5.3E-07 1.8E-11 58.0 -2.5 36 20-56 13-48 (198)
221 3trf_A Shikimate kinase, SK; a 97.9 1.1E-05 3.7E-10 51.0 3.5 25 32-56 4-28 (185)
222 1np6_A Molybdopterin-guanine d 97.9 7.5E-06 2.6E-10 53.2 2.8 25 33-57 6-30 (174)
223 1lv7_A FTSH; alpha/beta domain 97.9 4.1E-06 1.4E-10 55.7 1.6 31 25-57 39-69 (257)
224 2ga8_A Hypothetical 39.9 kDa p 97.9 8.1E-07 2.8E-11 64.3 -2.0 37 21-57 10-48 (359)
225 2plr_A DTMP kinase, probable t 97.9 1.1E-05 3.7E-10 51.4 3.4 26 32-57 3-28 (213)
226 2wwf_A Thymidilate kinase, put 97.8 1.1E-05 3.9E-10 51.6 3.4 25 31-55 8-32 (212)
227 1ex7_A Guanylate kinase; subst 97.8 8.8E-06 3E-10 53.6 2.9 22 34-55 2-23 (186)
228 4ag6_A VIRB4 ATPase, type IV s 97.8 7.7E-06 2.6E-10 57.9 2.7 48 19-68 19-69 (392)
229 1ly1_A Polynucleotide kinase; 97.8 1.2E-05 4.2E-10 50.0 3.3 22 34-55 3-24 (181)
230 3ice_A Transcription terminati 97.8 4.7E-06 1.6E-10 61.5 1.6 33 25-57 166-198 (422)
231 3lxx_A GTPase IMAP family memb 97.8 1.1E-05 3.7E-10 53.2 3.2 23 35-57 31-53 (239)
232 3iij_A Coilin-interacting nucl 97.8 1.1E-05 3.8E-10 50.9 3.1 24 31-54 9-32 (180)
233 2ohf_A Protein OLA1, GTP-bindi 97.8 1.4E-05 4.7E-10 58.3 3.9 41 29-69 18-68 (396)
234 1nn5_A Similar to deoxythymidy 97.8 1.3E-05 4.4E-10 51.4 3.4 26 30-55 6-31 (215)
235 2c95_A Adenylate kinase 1; tra 97.8 1.2E-05 4.2E-10 50.8 3.2 25 31-55 7-31 (196)
236 2dy1_A Elongation factor G; tr 97.8 3.9E-06 1.3E-10 63.9 0.8 39 27-65 3-42 (665)
237 2qag_A Septin-2, protein NEDD5 97.8 4.5E-06 1.5E-10 59.3 1.1 32 20-57 30-61 (361)
238 1uf9_A TT1252 protein; P-loop, 97.8 1.4E-05 4.8E-10 50.8 3.1 23 34-56 9-31 (203)
239 3r20_A Cytidylate kinase; stru 97.8 1.5E-05 5E-10 54.3 3.3 22 33-54 9-30 (233)
240 2ze6_A Isopentenyl transferase 97.8 1.3E-05 4.6E-10 54.1 3.1 22 35-56 3-24 (253)
241 1nks_A Adenylate kinase; therm 97.8 1.4E-05 4.8E-10 50.1 3.0 22 35-56 3-24 (194)
242 1gtv_A TMK, thymidylate kinase 97.8 4.9E-06 1.7E-10 53.5 0.7 23 35-57 2-24 (214)
243 1ypw_A Transitional endoplasmi 97.8 6.3E-06 2.2E-10 64.0 1.4 30 28-57 233-262 (806)
244 1tev_A UMP-CMP kinase; ploop, 97.8 1.9E-05 6.4E-10 49.6 3.3 23 33-55 3-25 (196)
245 1via_A Shikimate kinase; struc 97.8 1.7E-05 5.7E-10 50.0 3.1 22 35-56 6-27 (175)
246 2p5t_B PEZT; postsegregational 97.8 1E-05 3.4E-10 54.4 2.1 40 29-71 28-67 (253)
247 2z0h_A DTMP kinase, thymidylat 97.7 2.1E-05 7E-10 49.8 3.3 22 35-56 2-23 (197)
248 1gvn_B Zeta; postsegregational 97.7 1.6E-05 5.6E-10 54.7 3.0 26 31-56 31-56 (287)
249 3k53_A Ferrous iron transport 97.7 1.9E-05 6.5E-10 53.3 3.1 23 35-57 5-27 (271)
250 2bwj_A Adenylate kinase 5; pho 97.7 2.6E-05 8.7E-10 49.4 3.2 27 30-56 9-35 (199)
251 1aky_A Adenylate kinase; ATP:A 97.7 3.1E-05 1.1E-09 50.4 3.7 25 32-56 3-27 (220)
252 2zr9_A Protein RECA, recombina 97.7 2.8E-05 9.7E-10 55.2 3.8 29 29-57 57-85 (349)
253 2ius_A DNA translocase FTSK; n 97.7 1.6E-05 5.4E-10 59.6 2.4 43 25-67 159-202 (512)
254 2vli_A Antibiotic resistance p 97.7 2E-05 7E-10 49.4 2.6 25 32-56 4-28 (183)
255 2nzj_A GTP-binding protein REM 97.7 3E-05 1E-09 47.5 3.2 23 35-57 6-28 (175)
256 1zd8_A GTP:AMP phosphotransfer 97.7 2.9E-05 9.8E-10 50.9 3.3 25 31-55 5-29 (227)
257 3ake_A Cytidylate kinase; CMP 97.7 3E-05 1E-09 49.4 3.3 22 35-56 4-25 (208)
258 3ihw_A Centg3; RAS, centaurin, 97.7 6.2E-05 2.1E-09 47.6 4.6 22 35-56 22-43 (184)
259 3q72_A GTP-binding protein RAD 97.7 2.6E-05 8.7E-10 47.6 2.7 23 35-57 4-26 (166)
260 2erx_A GTP-binding protein DI- 97.7 3.3E-05 1.1E-09 47.0 3.2 22 35-56 5-26 (172)
261 2pbr_A DTMP kinase, thymidylat 97.6 3.4E-05 1.2E-09 48.5 3.2 22 35-56 2-23 (195)
262 3fb4_A Adenylate kinase; psych 97.6 3.3E-05 1.1E-09 49.9 3.3 21 35-55 2-22 (216)
263 2ged_A SR-beta, signal recogni 97.6 2.7E-05 9.2E-10 48.9 2.7 24 34-57 49-72 (193)
264 3tw8_B RAS-related protein RAB 97.6 3.3E-05 1.1E-09 47.5 3.0 23 35-57 11-33 (181)
265 3q85_A GTP-binding protein REM 97.6 3.7E-05 1.3E-09 46.9 3.2 22 35-56 4-25 (169)
266 2cdn_A Adenylate kinase; phosp 97.6 4.5E-05 1.5E-09 48.9 3.7 24 32-55 19-42 (201)
267 2lkc_A Translation initiation 97.6 5.3E-05 1.8E-09 46.6 3.9 25 32-56 7-31 (178)
268 1z2a_A RAS-related protein RAB 97.6 2.7E-05 9.4E-10 47.3 2.4 22 35-56 7-28 (168)
269 1zak_A Adenylate kinase; ATP:A 97.6 3E-05 1E-09 50.5 2.8 25 32-56 4-28 (222)
270 3cf0_A Transitional endoplasmi 97.6 4.1E-05 1.4E-09 52.5 3.4 37 29-68 45-81 (301)
271 1e6c_A Shikimate kinase; phosp 97.6 3.6E-05 1.2E-09 47.8 2.9 23 34-56 3-25 (173)
272 1ukz_A Uridylate kinase; trans 97.6 4.1E-05 1.4E-09 49.0 3.2 23 33-55 15-37 (203)
273 3dl0_A Adenylate kinase; phosp 97.6 4.3E-05 1.5E-09 49.4 3.3 21 35-55 2-22 (216)
274 1qf9_A UMP/CMP kinase, protein 97.6 3.9E-05 1.3E-09 48.0 3.0 23 33-55 6-28 (194)
275 1kao_A RAP2A; GTP-binding prot 97.6 3.3E-05 1.1E-09 46.6 2.5 22 35-56 5-26 (167)
276 2ce2_X GTPase HRAS; signaling 97.6 2.8E-05 9.6E-10 46.8 2.2 22 35-56 5-26 (166)
277 1svi_A GTP-binding protein YSX 97.6 3.5E-05 1.2E-09 48.3 2.7 23 34-56 24-46 (195)
278 1u8z_A RAS-related protein RAL 97.6 3.3E-05 1.1E-09 46.7 2.4 22 35-56 6-27 (168)
279 3pqc_A Probable GTP-binding pr 97.6 3.6E-05 1.2E-09 47.9 2.7 23 35-57 25-47 (195)
280 1zuh_A Shikimate kinase; alpha 97.6 5.4E-05 1.8E-09 47.2 3.5 22 34-55 8-29 (168)
281 2pt5_A Shikimate kinase, SK; a 97.6 5.1E-05 1.7E-09 47.0 3.3 21 35-55 2-22 (168)
282 2dyk_A GTP-binding protein; GT 97.6 3.5E-05 1.2E-09 46.6 2.5 22 35-56 3-24 (161)
283 1fzq_A ADP-ribosylation factor 97.6 3.9E-05 1.3E-09 48.3 2.7 22 35-56 18-39 (181)
284 1z0j_A RAB-22, RAS-related pro 97.6 3.6E-05 1.2E-09 46.8 2.5 23 35-57 8-30 (170)
285 3b1v_A Ferrous iron uptake tra 97.6 5.1E-05 1.7E-09 52.0 3.5 23 35-57 5-27 (272)
286 1z08_A RAS-related protein RAB 97.6 3.7E-05 1.3E-09 46.9 2.5 22 35-56 8-29 (170)
287 3lxw_A GTPase IMAP family memb 97.6 4.6E-05 1.6E-09 51.1 3.2 23 35-57 23-45 (247)
288 1ky3_A GTP-binding protein YPT 97.6 3.7E-05 1.3E-09 47.2 2.5 22 35-56 10-31 (182)
289 1ek0_A Protein (GTP-binding pr 97.6 3.8E-05 1.3E-09 46.6 2.4 23 35-57 5-27 (170)
290 1wms_A RAB-9, RAB9, RAS-relate 97.5 3.9E-05 1.3E-09 47.2 2.5 22 35-56 9-30 (177)
291 3bos_A Putative DNA replicatio 97.5 6.6E-05 2.3E-09 48.2 3.6 26 32-57 51-76 (242)
292 1g16_A RAS-related protein SEC 97.5 3.4E-05 1.2E-09 46.9 2.2 22 35-56 5-26 (170)
293 2cxx_A Probable GTP-binding pr 97.5 4.3E-05 1.5E-09 47.5 2.6 23 35-57 3-25 (190)
294 3t1o_A Gliding protein MGLA; G 97.5 4E-05 1.4E-09 47.7 2.4 23 35-57 16-38 (198)
295 1c1y_A RAS-related protein RAP 97.5 4.1E-05 1.4E-09 46.4 2.4 22 35-56 5-26 (167)
296 3clv_A RAB5 protein, putative; 97.5 4.1E-05 1.4E-09 47.5 2.5 22 35-56 9-30 (208)
297 1uj2_A Uridine-cytidine kinase 97.5 5.7E-05 1.9E-09 50.4 3.3 24 32-55 21-44 (252)
298 1xjc_A MOBB protein homolog; s 97.5 6.2E-05 2.1E-09 49.0 3.3 24 34-57 5-28 (169)
299 3llm_A ATP-dependent RNA helic 97.5 3.6E-05 1.2E-09 50.8 2.2 25 30-54 73-97 (235)
300 2z43_A DNA repair and recombin 97.5 8E-05 2.7E-09 51.8 4.1 28 29-56 103-130 (324)
301 2iyv_A Shikimate kinase, SK; t 97.5 4.9E-05 1.7E-09 47.9 2.7 22 34-55 3-24 (184)
302 2fn4_A P23, RAS-related protei 97.5 3.9E-05 1.3E-09 47.1 2.2 22 35-56 11-32 (181)
303 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 6.5E-05 2.2E-09 50.6 3.4 25 32-56 3-27 (260)
304 4dsu_A GTPase KRAS, isoform 2B 97.5 4.7E-05 1.6E-09 47.2 2.5 22 35-56 6-27 (189)
305 2hxs_A RAB-26, RAS-related pro 97.5 5.8E-05 2E-09 46.4 2.9 22 35-56 8-29 (178)
306 3bc1_A RAS-related protein RAB 97.5 4.6E-05 1.6E-09 47.2 2.4 22 35-56 13-34 (195)
307 1v5w_A DMC1, meiotic recombina 97.5 5.9E-05 2E-09 53.0 3.3 28 29-56 118-145 (343)
308 1r2q_A RAS-related protein RAB 97.5 4.8E-05 1.6E-09 46.2 2.4 22 35-56 8-29 (170)
309 1moz_A ARL1, ADP-ribosylation 97.5 3.7E-05 1.3E-09 47.6 1.9 22 35-56 20-41 (183)
310 2qby_A CDC6 homolog 1, cell di 97.5 5.4E-05 1.8E-09 51.7 2.9 27 31-57 43-69 (386)
311 3tlx_A Adenylate kinase 2; str 97.5 7.5E-05 2.5E-09 49.9 3.4 24 32-55 28-51 (243)
312 2oil_A CATX-8, RAS-related pro 97.5 5.2E-05 1.8E-09 47.6 2.5 22 35-56 27-48 (193)
313 2e87_A Hypothetical protein PH 97.5 6.5E-05 2.2E-09 52.8 3.2 26 32-57 166-191 (357)
314 1upt_A ARL1, ADP-ribosylation 97.5 5.6E-05 1.9E-09 46.1 2.4 22 35-56 9-30 (171)
315 2r6a_A DNAB helicase, replicat 97.5 7.8E-05 2.7E-09 54.1 3.6 48 20-68 190-238 (454)
316 1jbk_A CLPB protein; beta barr 97.5 9.9E-05 3.4E-09 45.3 3.5 26 32-57 42-67 (195)
317 2a9k_A RAS-related protein RAL 97.5 5.8E-05 2E-09 46.5 2.4 22 35-56 20-41 (187)
318 2xb4_A Adenylate kinase; ATP-b 97.5 8.3E-05 2.8E-09 48.9 3.3 21 35-55 2-22 (223)
319 3t5d_A Septin-7; GTP-binding p 97.5 6.3E-05 2.1E-09 50.9 2.8 23 35-57 10-32 (274)
320 2y8e_A RAB-protein 6, GH09086P 97.5 5.3E-05 1.8E-09 46.4 2.2 22 35-56 16-37 (179)
321 1r8s_A ADP-ribosylation factor 97.5 6.2E-05 2.1E-09 45.7 2.4 21 36-56 3-23 (164)
322 3b9p_A CG5977-PA, isoform A; A 97.5 9.8E-05 3.3E-09 49.7 3.6 26 32-57 53-78 (297)
323 3cbq_A GTP-binding protein REM 97.5 6.7E-05 2.3E-09 48.0 2.7 22 35-56 25-46 (195)
324 2g6b_A RAS-related protein RAB 97.4 6.3E-05 2.2E-09 46.3 2.4 22 35-56 12-33 (180)
325 1ksh_A ARF-like protein 2; sma 97.4 8.7E-05 3E-09 46.2 3.1 25 33-57 18-42 (186)
326 4fcw_A Chaperone protein CLPB; 97.4 5.9E-05 2E-09 50.8 2.5 25 34-58 48-72 (311)
327 1z0f_A RAB14, member RAS oncog 97.4 6.5E-05 2.2E-09 46.0 2.4 22 35-56 17-38 (179)
328 1a7j_A Phosphoribulokinase; tr 97.4 3.9E-05 1.3E-09 53.0 1.6 24 33-56 5-28 (290)
329 2f6r_A COA synthase, bifunctio 97.4 7.6E-05 2.6E-09 51.1 3.0 21 34-54 76-96 (281)
330 3con_A GTPase NRAS; structural 97.4 6.5E-05 2.2E-09 47.0 2.4 22 35-56 23-44 (190)
331 1fnn_A CDC6P, cell division co 97.4 9.6E-05 3.3E-09 50.8 3.5 27 32-58 41-69 (389)
332 2grj_A Dephospho-COA kinase; T 97.4 9.4E-05 3.2E-09 48.5 3.3 23 34-56 13-35 (192)
333 3iev_A GTP-binding protein ERA 97.4 9.2E-05 3.2E-09 51.2 3.4 22 35-56 12-33 (308)
334 2efe_B Small GTP-binding prote 97.4 7E-05 2.4E-09 46.2 2.5 22 35-56 14-35 (181)
335 1zbd_A Rabphilin-3A; G protein 97.4 9.9E-05 3.4E-09 46.7 3.2 23 35-57 10-32 (203)
336 2bov_A RAla, RAS-related prote 97.4 7.1E-05 2.4E-09 47.1 2.4 22 35-56 16-37 (206)
337 1wf3_A GTP-binding protein; GT 97.4 9.9E-05 3.4E-09 51.2 3.4 22 35-56 9-30 (301)
338 3iby_A Ferrous iron transport 97.4 9E-05 3.1E-09 50.2 3.1 23 35-57 3-25 (256)
339 4bas_A ADP-ribosylation factor 97.4 9.7E-05 3.3E-09 46.3 3.1 23 35-57 19-41 (199)
340 3tkl_A RAS-related protein RAB 97.4 7.4E-05 2.5E-09 46.7 2.4 22 35-56 18-39 (196)
341 2xtp_A GTPase IMAP family memb 97.4 8.7E-05 3E-09 49.3 2.9 23 35-57 24-46 (260)
342 3be4_A Adenylate kinase; malar 97.4 9.4E-05 3.2E-09 48.3 3.0 23 33-55 5-27 (217)
343 1nrj_B SR-beta, signal recogni 97.4 7.4E-05 2.5E-09 47.9 2.4 23 35-57 14-36 (218)
344 2h57_A ADP-ribosylation factor 97.4 7.8E-05 2.7E-09 46.8 2.5 23 35-57 23-45 (190)
345 2il1_A RAB12; G-protein, GDP, 97.4 0.0001 3.4E-09 46.7 3.0 23 35-57 28-50 (192)
346 1ltq_A Polynucleotide kinase; 97.4 0.00011 3.6E-09 49.7 3.3 22 34-55 3-24 (301)
347 2bme_A RAB4A, RAS-related prot 97.4 6.7E-05 2.3E-09 46.5 2.2 22 35-56 12-33 (186)
348 1vg8_A RAS-related protein RAB 97.4 7.8E-05 2.7E-09 47.1 2.5 22 35-56 10-31 (207)
349 1e4v_A Adenylate kinase; trans 97.4 9.9E-05 3.4E-09 47.9 3.0 21 35-55 2-22 (214)
350 2qu8_A Putative nucleolar GTP- 97.4 0.00011 3.6E-09 47.9 3.1 23 35-57 31-53 (228)
351 1ko7_A HPR kinase/phosphatase; 97.4 0.00024 8.1E-09 50.4 5.1 36 19-55 131-166 (314)
352 3kl4_A SRP54, signal recogniti 97.4 3.6E-05 1.2E-09 56.6 0.8 36 32-68 96-131 (433)
353 2gf0_A GTP-binding protein DI- 97.4 7.5E-05 2.6E-09 46.8 2.2 22 35-56 10-31 (199)
354 2gf9_A RAS-related protein RAB 97.4 8.5E-05 2.9E-09 46.6 2.4 23 35-57 24-46 (189)
355 2f7s_A C25KG, RAS-related prot 97.4 0.00012 4.2E-09 46.8 3.2 23 35-57 27-49 (217)
356 1jwy_B Dynamin A GTPase domain 97.4 0.00011 3.7E-09 49.9 3.1 23 35-57 26-48 (315)
357 2ce7_A Cell division protein F 97.4 2.3E-05 7.7E-10 58.1 -0.3 33 23-57 41-73 (476)
358 3kkq_A RAS-related protein M-R 97.4 0.00012 4E-09 45.4 3.0 22 35-56 20-41 (183)
359 3zvl_A Bifunctional polynucleo 97.4 0.00013 4.4E-09 52.6 3.6 27 30-56 255-281 (416)
360 1ak2_A Adenylate kinase isoenz 97.4 0.00015 5.3E-09 47.7 3.7 25 32-56 15-39 (233)
361 1mh1_A RAC1; GTP-binding, GTPa 97.4 9.1E-05 3.1E-09 45.7 2.4 22 35-56 7-28 (186)
362 2fg5_A RAB-22B, RAS-related pr 97.4 8.1E-05 2.8E-09 47.0 2.2 22 35-56 25-46 (192)
363 1z06_A RAS-related protein RAB 97.4 9.6E-05 3.3E-09 46.3 2.5 22 35-56 22-43 (189)
364 2w58_A DNAI, primosome compone 97.4 0.00016 5.3E-09 46.2 3.5 24 34-57 55-78 (202)
365 1zj6_A ADP-ribosylation factor 97.3 0.00012 4E-09 45.9 2.9 22 35-56 18-39 (187)
366 4dhe_A Probable GTP-binding pr 97.3 5E-05 1.7E-09 48.7 1.1 23 35-57 31-53 (223)
367 2o52_A RAS-related protein RAB 97.3 0.00012 4.1E-09 46.7 2.9 22 35-56 27-48 (200)
368 3a1s_A Iron(II) transport prot 97.3 0.00014 4.9E-09 49.1 3.4 23 35-57 7-29 (258)
369 3i8s_A Ferrous iron transport 97.3 0.00013 4.3E-09 49.7 3.2 23 35-57 5-27 (274)
370 1m7b_A RND3/RHOE small GTP-bin 97.3 8.6E-05 2.9E-09 46.5 2.2 22 35-56 9-30 (184)
371 1njg_A DNA polymerase III subu 97.3 0.00018 6.3E-09 45.3 3.7 22 35-56 47-68 (250)
372 3h4m_A Proteasome-activating n 97.3 0.00016 5.3E-09 48.4 3.5 28 30-57 48-75 (285)
373 2q3h_A RAS homolog gene family 97.3 0.00015 5E-09 45.8 3.2 22 35-56 22-43 (201)
374 3oes_A GTPase rhebl1; small GT 97.3 9E-05 3.1E-09 47.1 2.2 23 35-57 26-48 (201)
375 3cph_A RAS-related protein SEC 97.3 0.0001 3.6E-09 46.7 2.4 22 35-56 22-43 (213)
376 1x3s_A RAS-related protein RAB 97.3 0.00011 3.6E-09 45.8 2.4 22 35-56 17-38 (195)
377 3t5g_A GTP-binding protein RHE 97.3 0.00012 4.3E-09 45.2 2.7 21 35-55 8-28 (181)
378 2a5j_A RAS-related protein RAB 97.3 0.00011 3.7E-09 46.3 2.5 22 35-56 23-44 (191)
379 2h17_A ADP-ribosylation factor 97.3 0.00011 3.7E-09 45.9 2.4 22 35-56 23-44 (181)
380 3v9p_A DTMP kinase, thymidylat 97.3 0.00013 4.3E-09 49.3 2.9 29 29-57 21-49 (227)
381 2wsm_A Hydrogenase expression/ 97.3 0.00014 4.9E-09 46.7 3.0 23 34-56 31-53 (221)
382 2atv_A RERG, RAS-like estrogen 97.3 0.00012 3.9E-09 46.3 2.5 22 35-56 30-51 (196)
383 3dz8_A RAS-related protein RAB 97.3 9.8E-05 3.4E-09 46.5 2.2 22 35-56 25-46 (191)
384 2aka_B Dynamin-1; fusion prote 97.3 0.00012 4E-09 49.2 2.6 23 35-57 28-50 (299)
385 3llu_A RAS-related GTP-binding 97.3 0.00014 4.7E-09 46.2 2.8 22 35-56 22-43 (196)
386 4edh_A DTMP kinase, thymidylat 97.3 0.00017 5.8E-09 47.9 3.4 27 31-57 4-30 (213)
387 2zts_A Putative uncharacterize 97.3 0.00025 8.4E-09 46.0 4.1 25 29-53 26-50 (251)
388 2dby_A GTP-binding protein; GD 97.3 0.00011 3.6E-09 52.9 2.4 21 36-56 4-24 (368)
389 2p65_A Hypothetical protein PF 97.3 0.00014 4.6E-09 44.8 2.7 26 32-57 42-67 (187)
390 2bcg_Y Protein YP2, GTP-bindin 97.3 0.0001 3.5E-09 46.8 2.2 22 35-56 10-31 (206)
391 2cjw_A GTP-binding protein GEM 97.3 0.00012 4E-09 46.7 2.4 21 35-55 8-28 (192)
392 2ocp_A DGK, deoxyguanosine kin 97.3 0.00016 5.5E-09 47.8 3.2 24 33-56 2-25 (241)
393 3reg_A RHO-like small GTPase; 97.3 0.00012 4.1E-09 46.1 2.4 22 35-56 25-46 (194)
394 2p5s_A RAS and EF-hand domain 97.3 0.00012 4.2E-09 46.4 2.5 23 34-56 29-51 (199)
395 1zd9_A ADP-ribosylation factor 97.3 0.00012 4.2E-09 46.0 2.4 22 35-56 24-45 (188)
396 3bwd_D RAC-like GTP-binding pr 97.3 0.00024 8.1E-09 43.8 3.7 22 35-56 10-31 (182)
397 1p5z_B DCK, deoxycytidine kina 97.3 0.00012 4.2E-09 49.0 2.5 27 31-57 22-48 (263)
398 4djt_A GTP-binding nuclear pro 97.3 8.4E-05 2.9E-09 47.6 1.6 22 35-56 13-34 (218)
399 2j1l_A RHO-related GTP-binding 97.3 0.00016 5.5E-09 46.6 2.9 22 35-56 36-57 (214)
400 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00022 7.4E-09 46.8 3.6 27 30-56 36-62 (262)
401 2fu5_C RAS-related protein RAB 97.3 9.3E-05 3.2E-09 45.9 1.7 22 35-56 10-31 (183)
402 2i1q_A DNA repair and recombin 97.3 0.0002 6.7E-09 49.4 3.4 27 29-55 94-120 (322)
403 2iwr_A Centaurin gamma 1; ANK 97.2 9.5E-05 3.3E-09 45.6 1.6 22 35-56 9-30 (178)
404 3bh0_A DNAB-like replicative h 97.2 0.00023 7.7E-09 49.4 3.6 37 20-56 55-91 (315)
405 2b6h_A ADP-ribosylation factor 97.2 0.00016 5.6E-09 45.8 2.7 22 35-56 31-52 (192)
406 2fv8_A H6, RHO-related GTP-bin 97.2 0.00013 4.5E-09 46.6 2.2 22 35-56 27-48 (207)
407 2ew1_A RAS-related protein RAB 97.2 0.00013 4.4E-09 47.1 2.2 22 35-56 28-49 (201)
408 2qmh_A HPR kinase/phosphorylas 97.2 0.00035 1.2E-08 47.1 4.4 37 19-56 21-57 (205)
409 3d3q_A TRNA delta(2)-isopenten 97.2 0.0002 6.8E-09 51.3 3.3 24 34-57 8-31 (340)
410 3lv8_A DTMP kinase, thymidylat 97.2 0.00022 7.6E-09 48.3 3.4 27 31-57 25-51 (236)
411 3c5c_A RAS-like protein 12; GD 97.2 0.00016 5.5E-09 45.6 2.5 22 35-56 23-44 (187)
412 2h92_A Cytidylate kinase; ross 97.2 0.00021 7E-09 46.2 3.0 24 33-56 3-26 (219)
413 3umf_A Adenylate kinase; rossm 97.2 0.00018 6E-09 48.3 2.7 29 27-55 23-51 (217)
414 1l8q_A Chromosomal replication 97.2 0.00016 5.5E-09 49.5 2.6 25 33-57 37-61 (324)
415 3def_A T7I23.11 protein; chlor 97.2 0.00019 6.6E-09 48.2 2.9 23 35-57 38-60 (262)
416 2fh5_B SR-beta, signal recogni 97.2 0.00016 5.6E-09 46.1 2.4 22 35-56 9-30 (214)
417 1h65_A Chloroplast outer envel 97.2 0.00021 7.3E-09 48.0 3.1 23 35-57 41-63 (270)
418 3a8t_A Adenylate isopentenyltr 97.2 0.00023 7.9E-09 51.0 3.4 26 32-57 39-64 (339)
419 1gwn_A RHO-related GTP-binding 97.2 0.00015 5.1E-09 46.8 2.2 22 35-56 30-51 (205)
420 4tmk_A Protein (thymidylate ki 97.2 0.00027 9.1E-09 47.1 3.4 26 32-57 2-27 (213)
421 3tmk_A Thymidylate kinase; pho 97.2 0.00028 9.4E-09 47.3 3.4 27 31-57 3-29 (216)
422 2gco_A H9, RHO-related GTP-bin 97.2 0.00016 5.6E-09 46.0 2.2 22 35-56 27-48 (201)
423 2atx_A Small GTP binding prote 97.2 0.00017 6E-09 45.2 2.2 22 35-56 20-41 (194)
424 2hf9_A Probable hydrogenase ni 97.2 0.00025 8.4E-09 45.7 3.0 23 34-56 39-61 (226)
425 2x77_A ADP-ribosylation factor 97.2 0.00016 5.4E-09 45.2 1.9 22 35-56 24-45 (189)
426 4dcu_A GTP-binding protein ENG 97.1 0.0002 6.8E-09 51.8 2.6 23 34-56 24-46 (456)
427 1jal_A YCHF protein; nucleotid 97.1 0.00024 8.3E-09 51.1 3.0 23 34-56 3-25 (363)
428 3ld9_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 47.2 3.4 28 30-57 18-45 (223)
429 3exa_A TRNA delta(2)-isopenten 97.1 0.00031 1.1E-08 50.2 3.4 24 33-56 3-26 (322)
430 2g3y_A GTP-binding protein GEM 97.1 0.00032 1.1E-08 46.1 3.2 22 35-56 39-60 (211)
431 2yc2_C IFT27, small RAB-relate 97.1 8.4E-05 2.9E-09 46.7 0.4 22 35-56 22-43 (208)
432 3cpj_B GTP-binding protein YPT 97.1 0.00024 8.3E-09 45.9 2.5 22 35-56 15-36 (223)
433 3crm_A TRNA delta(2)-isopenten 97.1 0.00033 1.1E-08 49.8 3.3 24 34-57 6-29 (323)
434 1sky_E F1-ATPase, F1-ATP synth 97.1 0.00047 1.6E-08 51.4 4.0 35 22-57 141-175 (473)
435 2hup_A RAS-related protein RAB 97.1 0.00025 8.5E-09 45.3 2.2 22 35-56 31-52 (201)
436 2chg_A Replication factor C sm 97.1 0.00039 1.3E-08 43.5 3.0 22 35-56 40-61 (226)
437 3cnl_A YLQF, putative uncharac 97.0 0.00037 1.3E-08 47.5 3.1 24 34-57 100-123 (262)
438 3q3j_B RHO-related GTP-binding 97.0 0.0003 1E-08 45.5 2.4 22 35-56 29-50 (214)
439 2v1u_A Cell division control p 97.0 0.0003 1E-08 48.1 2.5 27 31-57 42-68 (387)
440 4gzl_A RAS-related C3 botulinu 97.0 0.00037 1.3E-08 44.6 2.7 22 35-56 32-53 (204)
441 1u94_A RECA protein, recombina 97.0 0.00062 2.1E-08 48.5 4.0 28 29-56 59-86 (356)
442 1ypw_A Transitional endoplasmi 97.0 7.3E-05 2.5E-09 58.1 -0.9 31 27-57 505-535 (806)
443 3sr0_A Adenylate kinase; phosp 97.0 0.00049 1.7E-08 45.5 3.3 22 35-56 2-23 (206)
444 3foz_A TRNA delta(2)-isopenten 97.0 0.00051 1.7E-08 48.9 3.4 24 33-56 10-33 (316)
445 2j0v_A RAC-like GTP-binding pr 97.0 0.00042 1.4E-08 44.1 2.7 22 35-56 11-32 (212)
446 2z4s_A Chromosomal replication 97.0 0.00042 1.4E-08 50.2 3.0 24 34-57 131-154 (440)
447 3syl_A Protein CBBX; photosynt 97.0 0.00058 2E-08 46.0 3.4 26 32-57 66-91 (309)
448 1sxj_D Activator 1 41 kDa subu 96.9 0.00052 1.8E-08 46.7 3.0 36 22-57 45-82 (353)
449 3eph_A TRNA isopentenyltransfe 96.9 0.00052 1.8E-08 50.4 3.1 23 34-56 3-25 (409)
450 3l0i_B RAS-related protein RAB 96.9 0.0001 3.5E-09 46.7 -0.6 22 35-56 35-56 (199)
451 2q6t_A DNAB replication FORK h 96.9 0.00058 2E-08 49.3 3.2 38 20-57 187-224 (444)
452 1lnz_A SPO0B-associated GTP-bi 96.9 0.00077 2.6E-08 47.8 3.7 33 24-56 149-181 (342)
453 4hlc_A DTMP kinase, thymidylat 96.9 0.00069 2.4E-08 44.6 3.3 25 33-57 2-26 (205)
454 2x2e_A Dynamin-1; nitration, h 96.9 0.00046 1.6E-08 48.3 2.5 23 35-57 33-55 (353)
455 3gj0_A GTP-binding nuclear pro 96.9 0.00034 1.2E-08 45.0 1.6 21 35-55 17-38 (221)
456 2qen_A Walker-type ATPase; unk 96.9 0.00082 2.8E-08 45.3 3.6 24 33-56 31-54 (350)
457 3uk6_A RUVB-like 2; hexameric 96.9 0.00073 2.5E-08 46.5 3.3 26 32-57 69-94 (368)
458 2qby_B CDC6 homolog 3, cell di 96.9 0.00077 2.6E-08 46.4 3.4 24 33-56 45-68 (384)
459 1ofh_A ATP-dependent HSL prote 96.9 0.00071 2.4E-08 45.2 3.2 25 33-57 50-74 (310)
460 4a1f_A DNAB helicase, replicat 96.9 0.00071 2.4E-08 48.1 3.3 47 20-67 33-79 (338)
461 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00079 2.7E-08 46.7 3.4 27 31-57 43-69 (322)
462 3t15_A Ribulose bisphosphate c 96.9 0.00074 2.5E-08 46.2 3.2 26 31-56 34-59 (293)
463 3p32_A Probable GTPase RV1496/ 96.8 0.00078 2.7E-08 47.3 3.3 24 33-56 79-102 (355)
464 3n70_A Transport activator; si 96.8 0.0008 2.7E-08 41.3 3.0 26 32-57 23-48 (145)
465 2r62_A Cell division protease 96.8 0.00026 8.9E-09 47.0 0.7 21 36-56 47-67 (268)
466 2hjg_A GTP-binding protein ENG 96.8 0.00061 2.1E-08 49.0 2.7 22 35-56 5-26 (436)
467 2orw_A Thymidine kinase; TMTK, 96.8 0.00096 3.3E-08 43.1 3.4 24 32-55 2-26 (184)
468 3th5_A RAS-related C3 botulinu 95.8 0.00019 6.6E-09 45.5 0.0 22 35-56 32-53 (204)
469 3r7w_A Gtpase1, GTP-binding pr 96.8 0.00077 2.6E-08 46.4 3.0 23 34-56 4-26 (307)
470 1puj_A YLQF, conserved hypothe 96.8 0.00081 2.8E-08 46.3 3.1 23 35-57 122-144 (282)
471 1d2n_A N-ethylmaleimide-sensit 96.8 0.00077 2.6E-08 45.0 2.8 25 32-56 63-87 (272)
472 1wxq_A GTP-binding protein; st 96.8 0.00075 2.6E-08 48.6 2.9 23 35-57 2-24 (397)
473 3d8b_A Fidgetin-like protein 1 96.8 0.0011 3.9E-08 46.4 3.7 27 31-57 115-141 (357)
474 3hws_A ATP-dependent CLP prote 96.8 0.00091 3.1E-08 46.6 3.2 26 32-57 50-75 (363)
475 3eie_A Vacuolar protein sortin 96.8 0.0011 3.9E-08 45.6 3.6 25 32-56 50-74 (322)
476 2qgz_A Helicase loader, putati 96.7 0.0013 4.4E-08 45.6 3.6 25 33-57 152-176 (308)
477 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0011 3.8E-08 47.4 3.2 28 28-55 118-145 (331)
478 3pfi_A Holliday junction ATP-d 96.7 0.0011 3.7E-08 45.3 3.0 24 34-57 56-79 (338)
479 2qpt_A EH domain-containing pr 96.6 0.001 3.4E-08 49.8 2.9 24 34-57 66-89 (550)
480 3ec1_A YQEH GTPase; atnos1, at 96.6 0.00093 3.2E-08 47.5 2.5 25 32-56 161-185 (369)
481 1xp8_A RECA protein, recombina 96.6 0.0016 5.4E-08 46.6 3.8 28 29-56 70-97 (366)
482 1um8_A ATP-dependent CLP prote 96.6 0.0012 4.3E-08 46.0 3.2 25 33-57 72-96 (376)
483 2fna_A Conserved hypothetical 96.6 0.0013 4.4E-08 44.3 3.1 23 34-56 31-53 (357)
484 1x6v_B Bifunctional 3'-phospho 96.6 0.0013 4.4E-08 50.5 3.4 26 32-57 51-76 (630)
485 3geh_A MNME, tRNA modification 96.6 0.00081 2.8E-08 49.4 2.2 22 35-56 226-247 (462)
486 1f5n_A Interferon-induced guan 96.6 0.001 3.6E-08 50.6 2.9 24 34-57 39-62 (592)
487 1m8p_A Sulfate adenylyltransfe 96.6 0.0013 4.4E-08 49.6 3.2 26 32-57 395-420 (573)
488 3sjy_A Translation initiation 96.6 0.0015 5E-08 46.6 3.4 22 35-56 10-31 (403)
489 2j69_A Bacterial dynamin-like 96.6 0.0013 4.4E-08 50.4 3.2 26 32-57 68-93 (695)
490 2xau_A PRE-mRNA-splicing facto 96.6 0.00091 3.1E-08 51.8 2.2 27 30-56 106-132 (773)
491 2hjg_A GTP-binding protein ENG 96.5 0.0015 5.1E-08 47.0 3.2 23 35-57 177-199 (436)
492 3gmt_A Adenylate kinase; ssgci 96.5 0.0016 5.6E-08 44.2 3.1 21 35-55 10-30 (230)
493 2qp9_X Vacuolar protein sortin 96.5 0.0016 5.4E-08 45.8 3.1 26 32-57 83-108 (355)
494 3gee_A MNME, tRNA modification 96.5 0.0011 3.8E-08 48.8 2.4 22 35-56 235-256 (476)
495 2bjv_A PSP operon transcriptio 96.5 0.0025 8.4E-08 42.3 3.9 26 32-57 28-53 (265)
496 1hqc_A RUVB; extended AAA-ATPa 96.5 0.0011 3.7E-08 44.8 2.0 24 33-56 38-61 (324)
497 3dpu_A RAB family protein; roc 96.5 0.0017 5.9E-08 47.7 3.2 23 35-57 43-65 (535)
498 3h2y_A GTPase family protein; 96.5 0.0011 3.7E-08 47.2 2.0 25 32-56 159-183 (368)
499 1mky_A Probable GTP-binding pr 96.5 0.002 7E-08 46.3 3.5 22 35-56 3-24 (439)
500 1jr3_A DNA polymerase III subu 96.5 0.0026 8.7E-08 43.6 3.8 22 35-56 40-61 (373)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.84 E-value=1.7e-20 Score=127.50 Aligned_cols=69 Identities=28% Similarity=0.400 Sum_probs=58.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|.... ....+|+++||++++|++++|+|||||||||||++|+|++ +|++|+|+++|.++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEEcc
Confidence 45666766664321 2357999999999999999999999999999999999997 578999999998875
No 2
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.83 E-value=1.1e-20 Score=129.68 Aligned_cols=55 Identities=33% Similarity=0.523 Sum_probs=50.9
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+...+++++||++++|++++|+||||||||||+|+|+|++ +|++|+|+++|+++.
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDIT 72 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECT
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC
Confidence 3468999999999999999999999999999999999997 578999999998874
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=3.7e-20 Score=124.93 Aligned_cols=65 Identities=29% Similarity=0.403 Sum_probs=55.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|+++.
T Consensus 5 l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEETTEECC
T ss_pred EEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 4455555544 3468999999999999999999999999999999999997 578999999998874
No 4
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.83 E-value=5.9e-20 Score=127.12 Aligned_cols=56 Identities=32% Similarity=0.561 Sum_probs=51.8
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
+.+.+|++|||++++||+++|+||||||||||+|+|+|++ +|++|+|+++|+++.+
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNS 77 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEETTEETTT
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCc
Confidence 4578999999999999999999999999999999999997 5789999999998753
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.82 E-value=7.2e-20 Score=126.20 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=55.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.+++.++| +...+++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|+++.
T Consensus 7 l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECC
T ss_pred EEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcc
Confidence 4455555544 3468999999999999999999999999999999999997 578999999998874
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=8.7e-20 Score=124.17 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=50.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|.++.
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDIT 71 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECT
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECC
Confidence 467999999999999999999999999999999999997 578999999998874
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.82 E-value=7.3e-20 Score=132.07 Aligned_cols=64 Identities=28% Similarity=0.457 Sum_probs=56.9
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
++.+++.++| +...+|++|||+|++||+++|+||||||||||||+|+|++ +|++|+|+++|+++
T Consensus 5 l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 5 LHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEISLSGKTI 68 (359)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEEETTEEE
T ss_pred EEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEEC
Confidence 5666666655 3578999999999999999999999999999999999997 57899999999887
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.82 E-value=1.1e-19 Score=125.81 Aligned_cols=65 Identities=28% Similarity=0.449 Sum_probs=55.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+|+++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|+++.
T Consensus 25 l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEESS
T ss_pred EEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEECCEECC
Confidence 4445554444 3468999999999999999999999999999999999997 578999999998873
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=1.4e-19 Score=124.83 Aligned_cols=65 Identities=26% Similarity=0.311 Sum_probs=55.2
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+|+++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|+++.
T Consensus 16 l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 16 VVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVV 80 (256)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETT
T ss_pred EEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 3344444443 3478999999999999999999999999999999999997 578999999998864
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.81 E-value=1.5e-19 Score=130.86 Aligned_cols=69 Identities=25% Similarity=0.335 Sum_probs=58.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|... .+...+|++|||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++|+++.
T Consensus 25 i~v~~ls~~y~~~-~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 25 IKLSNITKVFHQG-TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELT 93 (366)
T ss_dssp EEEEEEEEEEECS-SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECS
T ss_pred EEEEeEEEEeCCC-CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 4556666666432 23467999999999999999999999999999999999997 578999999999875
No 11
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.81 E-value=1.5e-19 Score=123.72 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=50.4
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+|+++||+|++|++++|+|||||||||||++|+|+. +|++|+|+++|.++.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLA 74 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETT
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhh
Confidence 467999999999999999999999999999999999997 578999999998875
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.81 E-value=1.1e-19 Score=126.58 Aligned_cols=54 Identities=28% Similarity=0.420 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
...+|++|||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++|+++.
T Consensus 20 ~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFDNKPID 73 (275)
T ss_dssp SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECC
T ss_pred CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEECCEECC
Confidence 356999999999999999999999999999999999997 578999999999873
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.81 E-value=1.9e-19 Score=129.72 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=57.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.+++.++| +...+++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|++++
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECT
T ss_pred EEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-CCCccEEEECCEECC
Confidence 5566666655 3468999999999999999999999999999999999997 578999999998874
No 14
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.81 E-value=1.6e-19 Score=123.49 Aligned_cols=66 Identities=29% Similarity=0.376 Sum_probs=55.4
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE-KNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~-~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+|+++||++++|++++|+||||||||||+++|+|+. .+|++|+|+++|+++.
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 4555555544 2468999999999999999999999999999999999982 2468999999998874
No 15
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=1.9e-19 Score=125.33 Aligned_cols=54 Identities=33% Similarity=0.461 Sum_probs=50.2
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+|+++||+|++|++++|+||||||||||||+|+|++ +|++|+|.++|+++.
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-PATSGTVNLFGKMPG 86 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTBCCC
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCeEEEECCEEcc
Confidence 468999999999999999999999999999999999997 578999999998764
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.81 E-value=2.4e-19 Score=130.26 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=57.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+|+++||++++||+++|+||||||||||||+|+|++ +|++|+|+++|+++.
T Consensus 4 l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECT
T ss_pred EEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-CCCCeEEEECCEECC
Confidence 6666766655 3578999999999999999999999999999999999997 578999999999875
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.80 E-value=2.9e-19 Score=129.19 Aligned_cols=65 Identities=25% Similarity=0.393 Sum_probs=56.5
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|++++
T Consensus 12 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECT
T ss_pred EEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECC
Confidence 5555665554 3467999999999999999999999999999999999997 578999999998874
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.80 E-value=2.7e-19 Score=129.21 Aligned_cols=65 Identities=26% Similarity=0.378 Sum_probs=56.3
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.+++.++| +...+|+++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|++++
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEE
T ss_pred EEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-CCCccEEEECCEECc
Confidence 5555665555 3468999999999999999999999999999999999997 578999999998764
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.80 E-value=4.1e-19 Score=122.52 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=57.2
Q ss_pred ceeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 2 SLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
-++++++.++|.......+.+++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-EPTSGDVLYDGERKK 72 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECC
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEECc
Confidence 35666666655200000167999999999999999999999999999999999997 578999999998764
No 20
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.80 E-value=2.3e-19 Score=121.10 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=48.6
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
++++++||++++|++++|+|||||||||||++|+|+. +|++|+|+++|.++
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEG
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEh
Confidence 8999999999999999999999999999999999997 57899999999875
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.80 E-value=2.4e-19 Score=129.23 Aligned_cols=65 Identities=29% Similarity=0.449 Sum_probs=56.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +...+++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|++++
T Consensus 4 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECT
T ss_pred EEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCceEEEECCEECC
Confidence 5555555544 3467999999999999999999999999999999999997 578999999998874
No 22
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.80 E-value=2.9e-19 Score=123.45 Aligned_cols=66 Identities=32% Similarity=0.425 Sum_probs=55.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE-KNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~-~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| +.+.+|+++||+|++|++++|+||||||||||||+|+|++ .+|++|+|+++|.++.
T Consensus 21 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 21 LSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred EEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 3444554444 3478999999999999999999999999999999999994 2467999999998875
No 23
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.79 E-value=2.6e-19 Score=121.87 Aligned_cols=54 Identities=22% Similarity=0.410 Sum_probs=50.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+.+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|.++|.++.
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPID 67 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEEST
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhh
Confidence 457999999999999999999999999999999999997 578999999998864
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.79 E-value=5e-19 Score=122.57 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=49.9
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+|+++||+|++|++++|+|||||||||||++|+|++ +|++|+|+++|.++.
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-QPTGGKVLLDGEPLV 84 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGG
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEcc
Confidence 67999999999999999999999999999999999997 578999999998875
No 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.78 E-value=2.3e-19 Score=128.74 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=56.2
Q ss_pred eeEEEEEEEEEeCCCCCee--EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKT--ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.+++.++| +... +++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|++++
T Consensus 4 l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 4 IIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVA 70 (353)
T ss_dssp EEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEE
T ss_pred EEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECc
Confidence 5666666655 2245 999999999999999999999999999999999997 578999999998764
No 26
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.78 E-value=3.7e-19 Score=121.00 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=52.3
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
++++++.++| . .....+++++||+|++|++++|+|||||||||||++|+|++ +|++|+|.++|
T Consensus 4 l~~~~l~~~y--~-~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g 66 (237)
T 2cbz_A 4 ITVRNATFTW--A-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVAIKG 66 (237)
T ss_dssp EEEEEEEEES--C-TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-EEEEEEEEECS
T ss_pred EEEEEEEEEe--C-CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECC
Confidence 4555555443 1 12467999999999999999999999999999999999997 46899999987
No 27
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.78 E-value=1.1e-18 Score=118.03 Aligned_cols=50 Identities=34% Similarity=0.505 Sum_probs=46.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
.+++|+++||++++|++++|+|||||||||||++|+|+. +|++|+|.++|
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g 69 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG 69 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEECS
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCccEEEECC
Confidence 467999999999999999999999999999999999997 57899999987
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.78 E-value=5.3e-19 Score=124.97 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=51.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
...+|++|||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|.++..
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQ 120 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTS
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEccc
Confidence 467999999999999999999999999999999999997 5789999999998753
No 29
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.78 E-value=8.9e-19 Score=126.12 Aligned_cols=55 Identities=31% Similarity=0.514 Sum_probs=50.7
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+...+++++||++++||+++|+||||||||||||+|+|++ +|++|+|+++|++++
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKGDVWIGGKRVT 80 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECT
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECC
Confidence 3457999999999999999999999999999999999997 578999999998874
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.77 E-value=1e-18 Score=125.38 Aligned_cols=64 Identities=25% Similarity=0.395 Sum_probs=54.7
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.+++.++| +.. +++++||++++|++++|+||||||||||||+|+|++ +|++|+|+++|++++
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECT
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECC
Confidence 4455555544 235 999999999999999999999999999999999997 578999999998875
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.76 E-value=1.2e-18 Score=119.73 Aligned_cols=51 Identities=39% Similarity=0.584 Sum_probs=47.7
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+++++||++++|++++|+||||||||||||+|+|++ +|+ |+|.++|.++.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGK-GSIQFAGQPLE 64 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGG
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCC-eEEEECCEECC
Confidence 5899999999999999999999999999999999997 467 99999998864
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.75 E-value=5e-18 Score=116.84 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=48.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..+|+++||+|++|++++|+|||||||||||++|+|+.+ + +|+|+++|.++.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVN 84 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGG
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhh
Confidence 469999999999999999999999999999999999974 5 899999998875
No 33
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.75 E-value=4.9e-18 Score=116.01 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=53.0
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++.+++.++| +. +++++||++++ ++++|+||||||||||||+|+|+. +|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECT
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECC
Confidence 4556665555 12 49999999999 999999999999999999999997 578999999998864
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.75 E-value=8e-18 Score=116.45 Aligned_cols=67 Identities=27% Similarity=0.325 Sum_probs=55.3
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++|.... ..+.+++++||+++ |++++|+||||||||||||+|+|++ |++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECc
Confidence 45666666663210 12579999999999 9999999999999999999999996 67999999998764
No 35
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.74 E-value=8.3e-18 Score=115.48 Aligned_cols=60 Identities=20% Similarity=0.394 Sum_probs=49.6
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
++++++.++| . ..+.+++++||+|++|++++|+|||||||||||++|+|++ +|++|+|.+
T Consensus 5 l~i~~l~~~y--~--~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~ 64 (253)
T 2nq2_C 5 LSVENLGFYY--Q--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEV 64 (253)
T ss_dssp EEEEEEEEEE--T--TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-CCSEEEEEE
T ss_pred EEEeeEEEEe--C--CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEE
Confidence 4455555544 1 1367999999999999999999999999999999999997 578999964
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=124.33 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=49.8
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+...+|+++||+|++||+++|+||||||||||||+|+|++ + ++|+|+++|++++
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~-~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGEIQIDGVSWD 85 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-E-EEEEEEESSCBTT
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-C-CCeEEEECCEECC
Confidence 3467999999999999999999999999999999999997 4 7899999998775
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.71 E-value=4.6e-17 Score=121.98 Aligned_cols=68 Identities=21% Similarity=0.377 Sum_probs=55.8
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++++.++| ......++++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 342 i~~~~v~~~y--~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAY--PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEEC--SSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS-CCSEEEEEETTEETT
T ss_pred EEEEEEEEEe--CCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCEEhh
Confidence 4445554433 2211357999999999999999999999999999999999997 578999999999875
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.71 E-value=3.3e-17 Score=122.51 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=49.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+++++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVR 408 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEhh
Confidence 57999999999999999999999999999999999997 578999999998874
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.70 E-value=1.9e-17 Score=123.79 Aligned_cols=55 Identities=27% Similarity=0.400 Sum_probs=51.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
..++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.+++.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKD 407 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGG
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEEhhh
Confidence 467999999999999999999999999999999999997 5789999999998763
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.70 E-value=3.2e-17 Score=122.54 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=50.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
+++++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.+
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLRE 409 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTT
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCCCeEEECCEEccc
Confidence 57999999999999999999999999999999999997 5789999999988753
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.69 E-value=2.1e-17 Score=115.74 Aligned_cols=49 Identities=35% Similarity=0.512 Sum_probs=46.1
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
..+++++||+|++|++++|+|||||||||||++|+|+. +|++|+|+++|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g 99 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSG 99 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-CEEEEEEECCS
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECC
Confidence 57999999999999999999999999999999999997 57899999987
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=3e-17 Score=123.27 Aligned_cols=55 Identities=22% Similarity=0.466 Sum_probs=50.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
..++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.+
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDRGQILVDGIDIRK 421 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSEEEEEETTEEGGG
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCeEEEECCEEhhh
Confidence 457999999999999999999999999999999999997 5789999999998763
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=8.2e-17 Score=120.83 Aligned_cols=56 Identities=25% Similarity=0.435 Sum_probs=51.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
+..++|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.+
T Consensus 354 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDELDVRT 409 (587)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESSSBGGG
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECCEEccc
Confidence 3467999999999999999999999999999999999997 5789999999988753
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.63 E-value=6.8e-16 Score=124.28 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=57.1
Q ss_pred eeEEEEEEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 3 LQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++++++ +|.++...+.++|+|+||+|++||.+||+||||||||||+++|.|+. +|++|+|.++|.++++
T Consensus 1077 I~f~nV--sf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1077 VIFKNV--RFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp EEEEEE--EECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTT
T ss_pred EEEEEE--EEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhh
Confidence 344444 44444333467999999999999999999999999999999999997 5789999999998863
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.62 E-value=1.5e-15 Score=122.11 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=54.0
Q ss_pred EEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 10 ~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
++|.+......++|+|+||++++||+++|+||||||||||+++|.|+. +|++|+|.++|.++..
T Consensus 393 v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~ 456 (1284)
T 3g5u_A 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRT 456 (1284)
T ss_dssp EEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGG
T ss_pred EEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHh
Confidence 334433223457999999999999999999999999999999999997 5789999999988753
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.60 E-value=2.8e-15 Score=120.76 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=55.9
Q ss_pred EEEEEeCCCCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEeccc
Q psy12072 9 MVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74 (76)
Q Consensus 9 ~~~~~~~~~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~~ 74 (76)
.++|.++...+.++|+|+||+|++|+.++|+||||||||||+++|.|+. +|.+|+|.++|.++..
T Consensus 420 nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 420 NVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRD 484 (1321)
T ss_dssp EEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTT
T ss_pred EeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchh
Confidence 3455554434578999999999999999999999999999999999997 5789999999988753
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.56 E-value=2.5e-15 Score=120.75 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=49.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.+++
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-CCSEEEEESSSSCTT
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEcc
Confidence 46999999999999999999999999999999999997 578999999998875
No 48
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.56 E-value=4.3e-15 Score=117.86 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=46.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+++|+++||++++|++++|+||||||||||+|+|+|++ +|++|+|++++
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll-~P~sG~I~~~~ 734 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSGEVYTHE 734 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS-CCSEEEEEECT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEcC
Confidence 57999999999999999999999999999999999997 57899999975
No 49
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.55 E-value=1e-16 Score=103.70 Aligned_cols=52 Identities=15% Similarity=0.017 Sum_probs=47.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
...+++++||++++|++++|+||||||||||+|+|+|++ +.+|+|.+++.++
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i 70 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTC
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEee
Confidence 456899999999999999999999999999999999996 5789999988655
No 50
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.53 E-value=2.4e-15 Score=100.28 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=31.9
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+-.|++|||++++|++++|+||||||||||+++|+|+. | |.+.+ +.+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~ 57 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSC 57 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCE
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eecc
Confidence 45799999999999999999999999999999999995 3 88888 5443
No 51
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.50 E-value=3.3e-15 Score=111.23 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=47.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.++++++|++++ ++++|+|||||||||||++|+|++ +|++|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL-IPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH-CCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEEcc
Confidence 4579999999999 999999999999999999999996 578999999997664
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.47 E-value=6e-14 Score=105.05 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=44.4
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
..+..++|++++||+++|+||||||||||+++|+|++ +|++|+|.+++..
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~ 331 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI-TADEGSVTPEKQI 331 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSBCCEESSCCC
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCee
Confidence 4577778999999999999999999999999999997 5789999887653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.44 E-value=1.4e-13 Score=102.86 Aligned_cols=46 Identities=28% Similarity=0.565 Sum_probs=41.9
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
..++.++|++++||+++|+||||||||||+++|+|++ +|++|+|.+
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~ 345 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKIEW 345 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBCCCCC
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEE
Confidence 4688999999999999999999999999999999996 578998865
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.41 E-value=1.9e-13 Score=103.64 Aligned_cols=46 Identities=30% Similarity=0.585 Sum_probs=42.0
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
..++.++|++++||+++|+||||||||||||+|+|++ +|++|+|.+
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~ 415 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKVEW 415 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBSCCCC
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEE
Confidence 3688999999999999999999999999999999997 578999865
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.38 E-value=2.2e-13 Score=101.70 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=39.7
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK 65 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i 65 (76)
.+++++| +|++||+++|+||||||||||||+|+|++ +|++|++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~-~p~~G~~ 78 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL-IPNLCGD 78 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTT
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCcc
Confidence 5899999 99999999999999999999999999997 4678884
No 56
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.37 E-value=1.9e-14 Score=105.26 Aligned_cols=53 Identities=38% Similarity=0.539 Sum_probs=45.8
Q ss_pred eeEEeeeEEEEeCCC--------------------EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGE--------------------LSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~--------------------~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++|+|++++|+ +++|+||||||||||+|+|+|+. ++++|+|.+++.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~~~t 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVVEVT 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC----
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCeecc
Confidence 468999999999999 99999999999999999999996 578999998886653
No 57
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.36 E-value=2e-13 Score=91.77 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=25.8
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+...+|+++||++++|++++|+||||||||||+++|++++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999963
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.36 E-value=4.5e-13 Score=101.41 Aligned_cols=51 Identities=29% Similarity=0.385 Sum_probs=35.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHH---------------------HHHhCCCcCCC-------cceEEECCEe
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLL---------------------NVISGYEKNEK-------EEEKKKKKKE 71 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll---------------------~~i~gl~~~~~-------~G~i~~~~~~ 71 (76)
..+|++|||+|++||+++|+||||||||||+ ++++++.. ++ .+.+.+++..
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSCC
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCch
Confidence 4589999999999999999999999999998 88888864 55 4455555543
No 59
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.33 E-value=6e-13 Score=85.54 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=26.4
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHH
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLN 51 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~ 51 (76)
++||++++|++++|+||||||||||++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHH
Confidence 689999999999999999999999999
No 60
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.33 E-value=6.3e-13 Score=100.77 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=39.8
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK 65 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i 65 (76)
.++++++ ++++||+++|+||||||||||||+|+|++ +|++|++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll-~p~~G~~ 148 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL-IPNLCED 148 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS-CCCTTTT
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC-CCCCCcc
Confidence 5899999 99999999999999999999999999997 4678885
No 61
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.33 E-value=4.3e-13 Score=88.07 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+...++++ .++++|++++|+||||||||||+++|+|+.
T Consensus 6 ~~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 6 PDTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345667777 699999999999999999999999999996
No 62
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.31 E-value=5.8e-14 Score=99.36 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=44.5
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
++++++|.+++|++++|+||||||||||+++|+|+. ++++|.|.++|.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~ 207 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCe
Confidence 678899999999999999999999999999999997 568999999875
No 63
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.31 E-value=7.6e-14 Score=96.07 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=43.2
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCC-cceEEECCEec
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEK-EEEKKKKKKEK 72 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~-~G~i~~~~~~~ 72 (76)
.+|++++ +++|++++|+||||||||||+++|+|+++ +. +|.|.++|.++
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPI 64 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCcc
Confidence 5788998 89999999999999999999999999974 55 89998877554
No 64
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.31 E-value=1.8e-13 Score=95.99 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=44.4
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+.+++|++++|++++|+|||||||||+++.|+|+.. +++|+|.+.+.+..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTF 139 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCS
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeeccc
Confidence 357899999999999999999999999999999975 57899999887653
No 65
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.30 E-value=1.5e-13 Score=98.04 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=42.7
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
++++|.+++|++++|+||||||||||+++|+|++ ++.+|.|.+++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCc
Confidence 8999999999999999999999999999999997 568999999763
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.30 E-value=1.2e-13 Score=97.73 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=40.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
..+|++++|+|++|++++|+||||||||||+++|+|++ +|+|..
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~ 156 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLS 156 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEEC
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEE
Confidence 35899999999999999999999999999999999995 688865
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.7e-12 Score=97.41 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=39.6
Q ss_pred eeEEeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhCCCcCCCcce
Q psy12072 20 KTILKSVSGRFRAG-----ELSAILGPSGAGKSSLLNVISGYEKNEKEEE 64 (76)
Q Consensus 20 ~~~l~~isl~i~~g-----~~~~liG~sGsGKSTll~~i~gl~~~~~~G~ 64 (76)
..++++++|++.+| |+++|+||||||||||+++|+|++ +|++|+
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~-~p~~G~ 408 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-KPDEGQ 408 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS-CCSBCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC-CCCCCc
Confidence 45789999999999 789999999999999999999997 467885
No 68
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.27 E-value=3.4e-13 Score=98.90 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=46.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
...+++++ |.+.+|++++|+|||||||||||++|+|+. +++.|.+.+.|+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~~~~G~i~~~G~ 193 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGE 193 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEece
Confidence 46799999 999999999999999999999999999996 578999999886
No 69
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.8e-13 Score=100.89 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=41.1
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc-e-EEECC
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEE-E-KKKKK 69 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G-~-i~~~~ 69 (76)
.+++|++++|++++|+||||||||||+|+|+|+. ++++| + |++++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-~p~~G~~pI~vdg 175 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-LKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-HHHHCCCCEEEEC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-cccCCceeEEEcC
Confidence 3688999999999999999999999999999997 46799 8 99876
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.27 E-value=9e-12 Score=99.02 Aligned_cols=38 Identities=34% Similarity=0.561 Sum_probs=35.6
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
+.+.+|+++||++++|++++|+||||||||||||+|+|
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999999999999999999983
No 71
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.26 E-value=3.1e-12 Score=82.51 Aligned_cols=31 Identities=35% Similarity=0.452 Sum_probs=26.1
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
|+++++|++++|+||||||||||+++|+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5678899999999999999999999999985
No 72
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.26 E-value=5.5e-13 Score=95.24 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=45.7
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+..+++++ |.|.+|++++|+||||||||||+++|+|+. .++.|.+.+.|+.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~ 108 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGER 108 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 46799999 999999999999999999999999999996 5778988887653
No 73
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.26 E-value=1.3e-12 Score=86.65 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=22.9
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-CCC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS-GYE 57 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~-gl~ 57 (76)
..+...++||++++|++++|+||||||||||+++|+ ++.
T Consensus 13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ---------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356789999999999999999999999999999999 985
No 74
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.6e-12 Score=96.79 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=38.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK 65 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i 65 (76)
...+++++ .+++|++++|+||||||||||||+|+|++ +|+.|+|
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll-~P~~G~i 134 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRF 134 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTT
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCC-CCCCceE
Confidence 35677766 58999999999999999999999999997 5788987
No 75
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.26 E-value=2.4e-13 Score=100.46 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=47.4
Q ss_pred CCeeEEeeeEE-EEeCCCEEEEECCCCCCHHHHHHH--HhCCCcCCCcceEEECCEe
Q psy12072 18 PAKTILKSVSG-RFRAGELSAILGPSGAGKSSLLNV--ISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 18 ~~~~~l~~isl-~i~~g~~~~liG~sGsGKSTll~~--i~gl~~~~~~G~i~~~~~~ 71 (76)
...++|++++| .+++|++++|+||||||||||+++ ++|+. ++.+|.+++++.+
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~-~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFVTFEE 78 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEEeC
Confidence 34679999999 999999999999999999999999 78996 4578999998865
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.26 E-value=9.9e-13 Score=93.34 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=33.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..++++++|++.+| +++|+|||||||||||++|+++.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999 99999999999999999997764
No 77
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.24 E-value=3.4e-12 Score=96.65 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=32.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
..+|++|||+|++||+++|+||||||||||+++|.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 35799999999999999999999999999998753
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.23 E-value=8.4e-13 Score=95.03 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=43.9
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.+++|++++|++++|+||||||||||++.|+|++. +++|+|.+.+.++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTF 196 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEeccccc
Confidence 56889999999999999999999999999999975 57899999887653
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.23 E-value=4.6e-13 Score=89.64 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=37.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
.+.+|+++ ++|++++|+|||||||||||++|+|+ + |++|+|.
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~ 53 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVS 53 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCS
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeee
Confidence 45678885 89999999999999999999999999 5 5789884
No 80
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.23 E-value=1.9e-12 Score=96.88 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=32.4
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK 65 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i 65 (76)
.+++||+++|+||||||||||||+|+|++ +|+.|++
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~-~p~~G~i 56 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI-IPNFGDP 56 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS-CCCTTCT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCcc
Confidence 35699999999999999999999999997 4678987
No 81
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.22 E-value=6.8e-12 Score=80.25 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=35.2
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
.+++|++++|+||||||||||+++|++. +..|.|++++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccch
Confidence 5789999999999999999999999998 3578898887543
No 82
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.21 E-value=4.4e-13 Score=94.96 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=47.3
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
..++++++|++.+|++++|+||||||||||+++|+|++ .+++|+|.+.+.+..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEEECGG
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEEEcCc
Confidence 46889999999999999999999999999999999996 467899998876653
No 83
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.19 E-value=2.3e-12 Score=96.60 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=43.2
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
.++++|++.+|++++|+|+||||||||+++|+|++. +.+|+|.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcc
Confidence 368999999999999999999999999999999974 5789999976543
No 84
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.18 E-value=5e-12 Score=85.04 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=33.8
Q ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEECCEe
Q psy12072 26 VSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKKKKKE 71 (76)
Q Consensus 26 isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~~~~~ 71 (76)
-....++|++++|+||||||||||+++|+|+.++ +..|.|.+.+.+
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 3446899999999999999999999999999643 357888776543
No 85
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=7.7e-12 Score=86.99 Aligned_cols=46 Identities=30% Similarity=0.431 Sum_probs=31.0
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE---CCEeccc
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK---KKKEKEK 74 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~---~~~~~~~ 74 (76)
|++.+|++++|+||||||||||||+|+|+. +++.|+|.+ +|+.+++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~-~~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CCC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccc-cccccceecccCCCCCcee
Confidence 355679999999999999999999999996 578999998 7776653
No 86
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.17 E-value=1.1e-11 Score=80.68 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=34.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-C-----CcceEEECCEe
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKN-E-----KEEEKKKKKKE 71 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~-----~~G~i~~~~~~ 71 (76)
-+++|++++|+||||||||||+++|+|+..+ + ..+.+++++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 6899999999999999999999999995432 2 34477776643
No 87
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.13 E-value=1.7e-12 Score=90.47 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=42.6
Q ss_pred eEEeeeEEEE-------------------eCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEE---CCEe
Q psy12072 21 TILKSVSGRF-------------------RAGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKK---KKKE 71 (76)
Q Consensus 21 ~~l~~isl~i-------------------~~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~---~~~~ 71 (76)
++++++++.+ .+|++++|+||||||||||+++|+|+... +.+|.|.+ ++..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4667777776 89999999999999999999999998531 57899988 7654
No 88
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.13 E-value=8.6e-12 Score=81.86 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=35.9
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcceEEECCEec
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYEKN--EKEEEKKKKKKEK 72 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~~~--~~~G~i~~~~~~~ 72 (76)
.++|++++|+||||||||||+++|+|++.+ +..|.|.+++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 478999999999999999999999999743 2468888776544
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.12 E-value=1.5e-11 Score=84.88 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|+||||||||||+|+|+|+. .+++|++.++|.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~-~~~~G~i~~~g~~i~ 41 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ-VSRKASSWNREEKIP 41 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-C------------CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCCCccccCCcccC
Confidence 47899999999999999999996 578999999887654
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.11 E-value=1.8e-11 Score=80.56 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=33.2
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHh--CCCcCCCcceEEECCE
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVIS--GYEKNEKEEEKKKKKK 70 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~--gl~~~~~~G~i~~~~~ 70 (76)
.+++|++++|+||||||||||+++|+ ++.. +..+.+++++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEcc
Confidence 78999999999999999999999999 6632 34566666543
No 91
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.10 E-value=2.4e-11 Score=85.37 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=37.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
+|++++|+||||||||||+++|+|+.. +++|+|.+.+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCC
Confidence 689999999999999999999999974 67999999887754
No 92
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.09 E-value=1.2e-12 Score=89.10 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=33.2
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+|++.+ ++++|+|||||||||||++|+|++ +|++|+|.++|.++
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~-~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRNTTE 65 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHH-SCCTTTC-------
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccc-ccCCCeEEECCEEc
Confidence 566666 899999999999999999999997 57899999998776
No 93
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=1.2e-11 Score=91.07 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=34.0
Q ss_pred CCeeEEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCC
Q psy12072 18 PAKTILKSVSGRFRAGEL--SAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~--~~liG~sGsGKSTll~~i~gl~ 57 (76)
+..+ +++++|++++|++ ++|+||||||||||+|+|+|+.
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3345 9999999999999 9999999999999999999984
No 94
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.05 E-value=1.1e-11 Score=92.29 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..+++++++.+++|+.++|+|||||||||||++|+|++ +++.|.+.+.+.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~ 296 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESS
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCc
Confidence 34677888999999999999999999999999999997 578899988664
No 95
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.04 E-value=1.2e-11 Score=84.67 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=41.6
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc-eEEE
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEE-EKKK 67 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G-~i~~ 67 (76)
...+|+++++.+++|++++|+||||+|||||++.|+++.. +.+| .+.+
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~ 69 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGL 69 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEE
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEE
Confidence 3568999999999999999999999999999999999964 4556 6654
No 96
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.03 E-value=4.7e-11 Score=84.75 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=38.2
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
.++|++++|+|||||||||+++.|+|++. +.+|+|.+.+.++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeeccc
Confidence 36899999999999999999999999974 67999999887754
No 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.9e-10 Score=74.82 Aligned_cols=40 Identities=20% Similarity=0.048 Sum_probs=23.8
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.....+++++||+++++++++|+|++||||||+.+.|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457799999999999999999999999999999999864
No 98
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.01 E-value=5.9e-11 Score=77.79 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++|++++|+||||||||||+++|+|+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999999975
No 99
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=2.4e-10 Score=79.63 Aligned_cols=43 Identities=28% Similarity=0.514 Sum_probs=32.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE---CCEecc
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK---KKKEKE 73 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~---~~~~~~ 73 (76)
.+.+|++++|+||||+|||||+|+|+ +. ++..|+|.+ +|+..+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCce
Confidence 45579999999999999999999999 85 578999998 887655
No 100
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.00 E-value=8e-11 Score=92.33 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=32.5
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHH-HhCC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNV-ISGY 56 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~-i~gl 56 (76)
.|++|||+|++|++++|+|+||||||||++. |+|+
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 6999999999999999999999999999996 6654
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.99 E-value=3.7e-11 Score=79.29 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
|++++|+||||||||||+++|+|++ + ++| +.++|...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~-~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL-K-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH-H-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc-c-cCC-EEEcCEec
Confidence 6889999999999999999999996 4 678 87776543
No 102
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=3.3e-11 Score=85.17 Aligned_cols=45 Identities=31% Similarity=0.313 Sum_probs=26.9
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE---CCEecc
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK---KKKEKE 73 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~---~~~~~~ 73 (76)
+++.+|++++|+||||+|||||+|+|+|+. .+..|+|.+ +|+..+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCcccc
Confidence 567789999999999999999999999996 467999988 666554
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=1.7e-10 Score=80.35 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+.+.++++++|.| +|+||||+|||||++.|+|....+.+| +.++|.+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~ 55 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK 55 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC----------------
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence 4567999999998 999999999999999999972245667 6554443
No 104
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.98 E-value=1.1e-11 Score=87.78 Aligned_cols=44 Identities=27% Similarity=0.303 Sum_probs=39.0
Q ss_pred EeeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCcCCCc----ceEEE
Q psy12072 23 LKSVSGRFRA--GELSAILGPSGAGKSSLLNVISGYEKNEKE----EEKKK 67 (76)
Q Consensus 23 l~~isl~i~~--g~~~~liG~sGsGKSTll~~i~gl~~~~~~----G~i~~ 67 (76)
.+.|++.+.+ ++.++|+||||||||||+++|+|+. +++. |.+++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-CCCcchhhHHHHH
Confidence 4568999999 9999999999999999999999996 4667 87765
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.97 E-value=4.8e-11 Score=76.80 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=31.7
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc----CCCcceEE
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK----NEKEEEKK 66 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~----~~~~G~i~ 66 (76)
.++++ |.+++|..++|+|+||||||||++.|+|... .+..|.+.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 46666 8899999999999999999999999999851 34566554
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.97 E-value=8.7e-11 Score=88.72 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=31.0
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
|+++. ++|+|||||||||||++|+|+..|.++|.|.++|.++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 55554 9999999999999999999996443799999999875
No 107
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.96 E-value=1.6e-10 Score=75.26 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=31.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
..++.+..+..++|++++|+|||||||||++++|++.. |.+++++.++
T Consensus 16 ~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~ 63 (200)
T 4eun_A 16 ENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAF 63 (200)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGG
T ss_pred hhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEccccc
Confidence 44555555777899999999999999999999999874 6677766543
No 108
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.96 E-value=1.6e-10 Score=74.56 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
+++++|+||||||||||+++|+++.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999963
No 109
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.95 E-value=9.6e-11 Score=82.46 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=29.4
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYEKNEKEE 63 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G 63 (76)
+++|++++|+||||||||||+++|+|++. +..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCC
Confidence 78999999999999999999999999974 4444
No 110
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.95 E-value=1.8e-10 Score=84.20 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=36.2
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
++|++++|+|||||||||||++|+|++ ++.+|.|.+.+.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccc
Confidence 689999999999999999999999996 45689998877655
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.95 E-value=4.5e-10 Score=72.21 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=26.2
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++++|++++|+|||||||||++++|+++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999999996
No 112
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.94 E-value=4e-10 Score=71.72 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=30.9
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
+++++.+.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6788999998 999999999999999999988753
No 113
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.92 E-value=1.7e-10 Score=89.51 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=37.3
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcce
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEE 64 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~ 64 (76)
+...+++|++|+ |++++|+||||||||||||+|+|+...++.|.
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 346799999999 99999999999999999999999853334554
No 114
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.91 E-value=5.7e-10 Score=86.93 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=35.8
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+...+++|++|+ ++|++++|+||||||||||||+|+|+.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 346799999999 999999999999999999999999874
No 115
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.91 E-value=9.3e-10 Score=87.03 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=33.3
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHH
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i 53 (76)
...+++|++|.+.+|++++|+||||||||||||++
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999999999999999999999
No 116
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.91 E-value=2.1e-10 Score=90.60 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=35.2
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
...+++|++|++++|++++|+||||||||||||+++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 46799999999999999999999999999999999744
No 117
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.90 E-value=1.2e-09 Score=78.68 Aligned_cols=44 Identities=36% Similarity=0.516 Sum_probs=33.0
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEKKKK 68 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i~~~ 68 (76)
++++++. .+|++++|+||||+|||||+|+|+|+. . +..|+|.++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~~G~I~~~ 250 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQ-NEILTNDVSNV 250 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCS-SCCCCC-----
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccc-cccccCCcccc
Confidence 4555553 479999999999999999999999996 5 678999875
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.90 E-value=1.6e-10 Score=82.84 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=35.0
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCcCCC-cceEEECCEe
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYEKNEK-EEEKKKKKKE 71 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~-~G~i~~~~~~ 71 (76)
+++|++++|+||||||||||+++|+++.. +. +|.|.+.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEeccc
Confidence 78999999999999999999999999964 44 7999765443
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.89 E-value=4.3e-10 Score=73.04 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.3
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
.++|++++|+||||||||||+++|+|+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999853
No 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.89 E-value=5.6e-10 Score=71.81 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.9
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+|++++|+||||||||||++.|+++.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999985
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.89 E-value=2.8e-10 Score=72.94 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
|++++|+||||||||||+++|++ +.+|.+++++.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA----QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH----HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc----ccCCeEEEcccch
Confidence 57899999999999999999986 2468888876543
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.88 E-value=1.1e-10 Score=75.68 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=40.9
Q ss_pred CeeEEeeeEE-EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 19 AKTILKSVSG-RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 19 ~~~~l~~isl-~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
+.+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~ 58 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVT 58 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEE
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEE
Confidence 3567788887 899999999999999999999999998854 4566776643
No 123
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.87 E-value=2.7e-10 Score=77.13 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=35.7
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHh---CCCcCCCcceEE--------ECCEec
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVIS---GYEKNEKEEEKK--------KKKKEK 72 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~---gl~~~~~~G~i~--------~~~~~~ 72 (76)
++|++++|+|||||||||++++|+ |+. .++.|.++ .+|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR-LLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-EEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-cCCCCceehHhHHHHHHcCCCc
Confidence 789999999999999999999999 995 56789888 666554
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.84 E-value=2.8e-10 Score=76.12 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCcCCCcceEEECC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVIS---GYEKNEKEEEKKKKK 69 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~---gl~~~~~~G~i~~~~ 69 (76)
++++++|+||||||||||+++|+ |+. .++.|++.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC-CEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe-EecHHHHHHHH
Confidence 46899999999999999999999 996 46778776643
No 125
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.83 E-value=5e-10 Score=80.20 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=33.0
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
...++++++|+|||||||||||++|+|++.+..+|.|...
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 5678889999999999999999999999754335766553
No 126
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.83 E-value=2.7e-10 Score=74.11 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=41.8
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE--EECCEec
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK--KKKKKEK 72 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i--~~~~~~~ 72 (76)
...+.+..++..++|++++|+|||||||||+++.|++.+. ..|.+ ++++.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchh
Confidence 3445666777778999999999999999999999999863 46777 7766544
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.83 E-value=3e-09 Score=69.63 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=34.8
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhC--CCcC----CCcceEEECCEe
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISG--YEKN----EKEEEKKKKKKE 71 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~g--l~~~----~~~G~i~~~~~~ 71 (76)
-+++|++++|+||||||||||++.|++ +..+ ...+.+++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 4322 146778886654
No 128
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.82 E-value=1.2e-09 Score=72.77 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=32.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
..++|++++|.|+|||||||++++|+++ .|.+.+.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence 4578999999999999999999999997 5777776654
No 129
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.82 E-value=9.2e-11 Score=80.51 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=35.2
Q ss_pred CCeeEEeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 18 PAKTILKSVSGRFRA---GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 18 ~~~~~l~~isl~i~~---g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+...+|++++|++.+ |++++|+|++||||||+.++|++.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 346799999999999 999999999999999999999874
No 130
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.81 E-value=4.3e-09 Score=73.37 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=28.6
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++++|++.+| +++|+|||||||||||++|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 3678888888 9999999999999999999854
No 131
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.79 E-value=1.7e-09 Score=86.03 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=34.9
Q ss_pred CeeEEeeeEEEEeC-------CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 19 AKTILKSVSGRFRA-------GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 19 ~~~~l~~isl~i~~-------g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
...+++|++|.+++ |++++|+||||||||||||+| |+.
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 46799999999987 899999999999999999999 774
No 132
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.79 E-value=3.7e-10 Score=77.69 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=40.7
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
..+++++++.+++| ++|+||||||||||+++|++... + +.+.+++.++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l 80 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-L--NFISVKGPEL 80 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHH
Confidence 45788899999999 99999999999999999999853 2 6888877554
No 133
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.79 E-value=1.2e-09 Score=76.35 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=34.4
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-------CCCcceEEECCEecc
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYEK-------NEKEEEKKKKKKEKE 73 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~~-------~~~~G~i~~~~~~~~ 73 (76)
++++|+|+||||||||||.|.|+.. .++.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 5899999999999999999999851 467899999887764
No 134
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.78 E-value=2.9e-09 Score=84.82 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=30.8
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHH
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i 53 (76)
.|++|||+|++|++++|+|+||||||||+++|
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 69999999999999999999999999999985
No 135
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.76 E-value=5.8e-10 Score=72.69 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=29.9
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEECCEe
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYEKNEK---EEEKKKKKKE 71 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~~~~~---~G~i~~~~~~ 71 (76)
++++|+|+||||||||++.|+++.. +. .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcc
Confidence 5899999999999999999999975 45 7999998876
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.76 E-value=5.7e-09 Score=76.21 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=33.2
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++++|+++.++.++|+|+|||||||||++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 47999999999999999999999999999999983
No 137
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.75 E-value=2.7e-09 Score=69.48 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+||||||||||+++|+|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999996
No 138
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=4.1e-09 Score=77.01 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 17 ~~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
++.+.++++++|.| +|+|+||+|||||+++|+|+..
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 34567999999998 9999999999999999999964
No 139
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.74 E-value=2.9e-09 Score=84.68 Aligned_cols=33 Identities=42% Similarity=0.584 Sum_probs=31.3
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
.|++|||+|++|++++|+|+||||||||++.|.
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 699999999999999999999999999999863
No 140
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.73 E-value=9.5e-09 Score=81.26 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=28.6
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHH
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLL 50 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll 50 (76)
..|++|||+|++|++++|+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 469999999999999999999999999997
No 141
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.72 E-value=8.9e-09 Score=73.41 Aligned_cols=32 Identities=50% Similarity=0.789 Sum_probs=29.1
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
.++++++++++| +++|+|||||||||||++|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 456788999998 89999999999999999998
No 142
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=7.9e-09 Score=67.81 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=25.8
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999863
No 143
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.71 E-value=4.3e-09 Score=75.58 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=31.6
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
..+++++|++.+| +++|+|||||||||+|++|++
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3568999999999 999999999999999999997
No 144
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.69 E-value=1.3e-08 Score=65.24 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=30.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC----------CcceEEECCEec
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKNE----------KEEEKKKKKKEK 72 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~~----------~~G~i~~~~~~~ 72 (76)
.++|+|+||||||||++.+++...+. ..|.+.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 57999999999999999999985321 468888888654
No 145
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.67 E-value=7.1e-09 Score=73.59 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=40.2
Q ss_pred eEEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCc----ce-EEECCEe
Q psy12072 21 TILKSV-SGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKE----EE-KKKKKKE 71 (76)
Q Consensus 21 ~~l~~i-sl~i~~g~~~~liG~sGsGKSTll~~i~gl~~-~~~~----G~-i~~~~~~ 71 (76)
..|+.+ .+.+++|+++.|+||||||||||++.++++.. +++. |. +++++..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 345554 57899999999999999999999999999862 2344 67 7887654
No 146
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.67 E-value=4.2e-09 Score=66.55 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=28.7
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
.+|++++|+|++||||||+++.|++.. |.+++++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCcc
Confidence 468899999999999999999998763 455555433
No 147
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.67 E-value=2.4e-09 Score=69.86 Aligned_cols=38 Identities=24% Similarity=0.115 Sum_probs=32.1
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
.+++++++|+|+||||||||++.|++++. +..|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEe
Confidence 56789999999999999999999999863 456777654
No 148
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.66 E-value=5.9e-09 Score=66.06 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc--eEEECCEe
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEE--EKKKKKKE 71 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G--~i~~~~~~ 71 (76)
+|+.++|+||+|+|||||+++|++... + +| .+++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHH
Confidence 899999999999999999999999864 3 57 67766543
No 149
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.63 E-value=2.5e-09 Score=77.28 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=38.0
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
..+++++++.+++|++++|+||+|||||||+++|++.. +|.++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEE
Confidence 35788999999999999999999999999999999863 466554
No 150
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.62 E-value=5.7e-09 Score=66.45 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=28.6
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
+|.+++|+.++|.||+|+|||||+++|++...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677899999999999999999999999863
No 151
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.61 E-value=1.5e-09 Score=73.65 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=38.4
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
.+++++++.+++| +.|+||||+|||||+++|++... .|.+.+++.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~ 108 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSD 108 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHH
Confidence 4677888899988 89999999999999999999852 6778776543
No 152
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.61 E-value=2.6e-09 Score=71.32 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=38.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKK 70 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~ 70 (76)
..+++++++.+++| +.|+||||+|||||+++|++... .|.+.+++.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~ 83 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 83 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH
Confidence 35678888999998 89999999999999999999852 677777654
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.60 E-value=4e-09 Score=74.47 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=41.5
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
+.+++|.++++++++|+|++|+||||++..|++... +.+++|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCC
Confidence 368899999999999999999999999999999974 4678888765544
No 154
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.57 E-value=5.8e-09 Score=78.50 Aligned_cols=43 Identities=28% Similarity=0.164 Sum_probs=35.6
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc-eE-EECCEec
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEE-EK-KKKKKEK 72 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G-~i-~~~~~~~ 72 (76)
.+++|++++|+|+||||||||+++|++++. +.+| .+ ++++.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-ccCCceEEEECCcHH
Confidence 467899999999999999999999999975 4565 67 4777543
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.55 E-value=9.1e-09 Score=72.38 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=38.9
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
++++...++++++|+|||||||||++..|+++.. +..+.|.+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~ 142 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADT 142 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEcccc
Confidence 4566678899999999999999999999999974 4678888765544
No 156
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.55 E-value=5.8e-09 Score=74.04 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.9
Q ss_pred EEeeeEEEEeCCC------EEEEECCCCCCHHHHHHHHhCCCcC-CCcceE
Q psy12072 22 ILKSVSGRFRAGE------LSAILGPSGAGKSSLLNVISGYEKN-EKEEEK 65 (76)
Q Consensus 22 ~l~~isl~i~~g~------~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i 65 (76)
.+++++..+...+ +++|+||||||||||+++|+++... +..|.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 4444455555554 8999999999999999999999642 345553
No 157
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.55 E-value=3.4e-08 Score=71.06 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=28.0
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
+++.++++++|+|||||||||||++|+++..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5577899999999999999999999999863
No 158
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.54 E-value=5.4e-08 Score=62.38 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcC----C------CcceEEECCEec
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKN----E------KEEEKKKKKKEK 72 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~----~------~~G~i~~~~~~~ 72 (76)
.++|+|++|+|||||++.++|.... + ..|.+.++|..+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 4799999999999999999998421 2 256788887643
No 159
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.53 E-value=3.4e-08 Score=61.98 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+++++|+||+||||||++++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999974
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.53 E-value=3.2e-08 Score=63.82 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=34.0
Q ss_pred eEEeeeEE-EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 21 TILKSVSG-RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 21 ~~l~~isl-~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
+.|+.+.. .+++|++++|+||||||||||++.+++ . ...+-++++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34555543 689999999999999999999999998 2 233445554
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.52 E-value=5.4e-09 Score=78.42 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
+...+++.+++.+.+|+.+.|+||+|+|||||+++|+++..+...|.+.+.+..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 456788999999999999999999999999999999999754434777775543
No 162
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.52 E-value=1.2e-08 Score=70.96 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=39.9
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEecc
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~~ 73 (76)
++++|+ ++++++|+|++|+||||++..|+++.. +..|++.+.+.+..
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcc
Confidence 678887 899999999999999999999999974 46788988665543
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.51 E-value=5e-08 Score=65.14 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.7
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+...+|++++|+||||||||||++.|.+..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345689999999999999999999999874
No 164
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.50 E-value=7.5e-08 Score=60.90 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=23.1
Q ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 26 VSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 26 isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
.++++.+| +.+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 44555544 99999999999999999986
No 165
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.49 E-value=1e-07 Score=69.24 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=32.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHH--HhCCCcCCC-----cceEEECCEe
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNV--ISGYEKNEK-----EEEKKKKKKE 71 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~--i~gl~~~~~-----~G~i~~~~~~ 71 (76)
-|++|+++.|+||||||||||++. +.++. +++ .+.+++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~-p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQI-PLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhcc-CcccCCCCCcEEEEeCCC
Confidence 589999999999999999999994 45664 333 3377776654
No 166
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.48 E-value=5.9e-08 Score=62.90 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=27.3
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
=.++++.+++|+|++||||||+++.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 367889999999999999999999999974
No 167
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.48 E-value=9.8e-08 Score=69.33 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=34.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC-----------cCCCcceEEECC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYE-----------KNEKEEEKKKKK 69 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~-----------~~~~~G~i~~~~ 69 (76)
.+++|..++|+|+||+|||||+|+|+|.. ..|..|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 56789999999999999999999999921 236789988876
No 168
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.46 E-value=8.7e-08 Score=65.05 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=26.8
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+++|++++|+||||||||||++.+++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999864
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.40 E-value=5.3e-09 Score=73.13 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=34.8
Q ss_pred CCeeEEeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 18 PAKTILKSVSGRFRAG-------ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g-------~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+...+++++++.++++ +.++|.||||+|||||+++|++..
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456788888888876 889999999999999999999985
No 170
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.37 E-value=1.6e-07 Score=69.32 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=33.0
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcce--EEEC
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEE--KKKK 68 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~--i~~~ 68 (76)
+..+++|++++|+||||||||||++.++|+.. + .|. +++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~-~G~~vi~~~ 316 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-A-NKERAILFA 316 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-T-TTCCEEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-h-CCCCEEEEE
Confidence 44799999999999999999999999999964 4 354 4543
No 171
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.34 E-value=2.6e-07 Score=59.28 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=25.9
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++|+..+++.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999754
No 172
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.33 E-value=4.4e-07 Score=63.61 Aligned_cols=29 Identities=38% Similarity=0.646 Sum_probs=23.2
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
+..+.+.+ .+++|+|||||||||+|.+|.
T Consensus 16 ~~~i~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 34455554 499999999999999999874
No 173
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.33 E-value=3.5e-07 Score=59.04 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|+|++||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999985
No 174
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.32 E-value=1.9e-08 Score=70.92 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=37.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
..+++++++.+.++.+++|+|++|+|||||++.|++... +..+.+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-~~~~~v~v 89 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-REGLKVAV 89 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 356778888889999999999999999999999998753 23444433
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.32 E-value=3.1e-07 Score=59.75 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=26.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cCCCcceEEE
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE--KNEKEEEKKK 67 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~--~~~~~G~i~~ 67 (76)
+.+++|+||+||||||+.++|++.. ...+.|+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999998753 1235565544
No 176
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.31 E-value=3.3e-07 Score=61.44 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=29.4
Q ss_pred eEEeeeEEEEe---CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Q psy12072 21 TILKSVSGRFR---AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKK 66 (76)
Q Consensus 21 ~~l~~isl~i~---~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~ 66 (76)
.-+.++++.+. +|.+++|.|++||||||+++.|+..+. . .+.+.
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~ 57 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVI 57 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCce
Confidence 34667777776 899999999999999999999998863 3 44554
No 177
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.29 E-value=4.5e-07 Score=59.67 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=22.9
Q ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 26 VSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 26 isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 4455554 499999999999999999885
No 178
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.29 E-value=3.7e-07 Score=59.28 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.1
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
...+|.+++|+|||||||||+.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999999998653
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.27 E-value=5.5e-07 Score=57.10 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++|++++|+|++||||||+.+.|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999875
No 180
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.27 E-value=1.6e-07 Score=66.53 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
++.+++|+|++|||||||++.|.+... +..|.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEE
Confidence 467899999999999999999999753 34555544
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.26 E-value=3.6e-07 Score=59.66 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=32.1
Q ss_pred eEEeee-EEEEeCCCEEEEECCCCCCHHHHHH-HHhCCCcCCCcceEEEC
Q psy12072 21 TILKSV-SGRFRAGELSAILGPSGAGKSSLLN-VISGYEKNEKEEEKKKK 68 (76)
Q Consensus 21 ~~l~~i-sl~i~~g~~~~liG~sGsGKSTll~-~i~gl~~~~~~G~i~~~ 68 (76)
+.|+.+ ..-+++|+++.|+||+|+|||||+. ++.... +...+-+++.
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~ 58 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVA 58 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE
Confidence 344554 5568999999999999999999955 444443 3333444443
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.24 E-value=3.7e-07 Score=64.18 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=27.5
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+|++++++++ .++|+|++|||||||++.|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458889999998 8999999999999999999995
No 183
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.23 E-value=3.2e-07 Score=63.95 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=30.6
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc-eEEEC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEE-EKKKK 68 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G-~i~~~ 68 (76)
.++++++|+||||+||||++..|++... +++| .|.+-
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G~~V~lv 140 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-LEKHKKIAFI 140 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCEEEEE
Confidence 4789999999999999999999999964 3456 66553
No 184
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.22 E-value=2e-07 Score=68.65 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=31.1
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+++++|.+.+| +.+|+|+|||||||||.+|..+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999 9999999999999999999554
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.21 E-value=1.4e-07 Score=61.61 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=33.6
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc--eEEECCE
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEE--EKKKKKK 70 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G--~i~~~~~ 70 (76)
+.+++|.+++|.|++||||||+.+.|+..+. +..| .+++++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECCh
Confidence 3467899999999999999999999998853 3456 6666643
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=3.9e-07 Score=62.78 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHhC-CCcCCCcceEEECCEe
Q psy12072 36 SAILGPSGAGKSSLLNVISG-YEKNEKEEEKKKKKKE 71 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~g-l~~~~~~G~i~~~~~~ 71 (76)
+.|.||+|+||||++++|++ +. .+..|.+.+++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~-~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF-GPGVYRLKIDVRQ 74 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS-CTTCCC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCCCeEEeccee
Confidence 89999999999999999999 54 4567887776543
No 187
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.19 E-value=1.1e-07 Score=70.91 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=36.8
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKK 69 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~ 69 (76)
++.++++.+ +|+.++|+||+|+|||||+++|++... +..+.+.+.+
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEecc
Confidence 455666666 799999999999999999999999963 4567766655
No 188
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.18 E-value=1.8e-06 Score=62.39 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=30.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCc-----------CCCcceEEECCEec
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEK-----------NEKEEEKKKKKKEK 72 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~-----------~~~~G~i~~~~~~~ 72 (76)
.++|+|++|+|||||++.|.|... .+..|.+.++|..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 689999999999999999999842 14567888887643
No 189
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.18 E-value=7.1e-07 Score=57.40 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|+|++||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999984
No 190
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.16 E-value=1.1e-06 Score=55.26 Aligned_cols=26 Identities=50% Similarity=0.653 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++..++|+|++|+|||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999863
No 191
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.13 E-value=8.6e-07 Score=61.65 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=25.1
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
.++.+++|.|++|||||||.+.|+++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4577999999999999999999999864
No 192
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.11 E-value=3.3e-06 Score=60.33 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCCcC----------CCcceEEECCEec
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYEKN----------EKEEEKKKKKKEK 72 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~~~----------~~~G~i~~~~~~~ 72 (76)
.++|+|++|+|||||++.|+|.... +..+.+.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 4899999999999999999998531 3567888877543
No 193
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.11 E-value=2e-06 Score=67.66 Aligned_cols=29 Identities=41% Similarity=0.493 Sum_probs=27.7
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHH
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLL 50 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll 50 (76)
=|+|||++|+.+++++|.|.||||||||.
T Consensus 25 NLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 25 NLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 48999999999999999999999999997
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.09 E-value=6.2e-07 Score=65.77 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=38.1
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
++++|. ++++++++|++|+||||++..|++... +..+.+.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccc
Confidence 567777 889999999999999999999999974 5678887755443
No 195
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.09 E-value=1.5e-06 Score=55.41 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=20.6
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 35788999988777 5689999999999999999873
No 196
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.07 E-value=2e-06 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.4
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
.+|.+++|+|++||||||+.+.|+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999999999998
No 197
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.07 E-value=2.7e-06 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 198
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.05 E-value=2.9e-06 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 199
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.05 E-value=2.9e-06 Score=53.96 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=28.7
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK 65 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i 65 (76)
...+|.+++|+|++||||||+.+.|+..+. ...+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ-KEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeE
Confidence 345788999999999999999999998753 334444
No 200
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.04 E-value=2.6e-06 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+++|+|++||||||+.+.|+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 201
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.04 E-value=3.4e-07 Score=63.87 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=37.0
Q ss_pred ee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 24 KS-VSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 24 ~~-isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
++ ++|+.+ +++++++|++|+||||++..|++... +..+.+.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 45 777766 89999999999999999999999864 456777765444
No 202
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.04 E-value=5.4e-07 Score=67.12 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=37.8
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEec
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~~ 72 (76)
.+++++++.+++| +.|+||+|+|||||+++|++... .+.+.+++.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHH
Confidence 3566778888888 89999999999999999999852 56777766443
No 203
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.04 E-value=3.9e-06 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999864
No 204
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.03 E-value=1.5e-06 Score=60.15 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999984
No 205
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.02 E-value=4.5e-06 Score=59.12 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=26.0
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
+.+..+++.+ .+++|+|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3566777766 499999999999999999986
No 206
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=1.8e-06 Score=61.96 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=32.4
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EECC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEK-KKKK 69 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i-~~~~ 69 (76)
-+++|+++.|.||+|||||||+..++.... +..|.+ +++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEec
Confidence 488999999999999999999999998853 345655 5544
No 207
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.99 E-value=4e-06 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999996
No 208
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.98 E-value=5.2e-06 Score=52.17 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998763
No 209
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.98 E-value=4.9e-06 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 210
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.97 E-value=4.4e-06 Score=66.79 Aligned_cols=29 Identities=41% Similarity=0.450 Sum_probs=27.6
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHH
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLL 50 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll 50 (76)
=|+|||++|+.+++++|.|.||||||||.
T Consensus 35 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 35 NLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 48999999999999999999999999985
No 211
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.97 E-value=4.7e-06 Score=66.52 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=27.6
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHH
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLL 50 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll 50 (76)
=|+|||++|+.+++++|.|.||||||||.
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 48999999999999999999999999985
No 212
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.96 E-value=5.8e-06 Score=54.76 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
...++.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 567888999999999999999999985
No 213
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.94 E-value=5.9e-06 Score=50.68 Aligned_cols=19 Identities=32% Similarity=0.565 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHH
Q psy12072 35 LSAILGPSGAGKSSLLNVI 53 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i 53 (76)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 214
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=3.4e-07 Score=63.54 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=35.0
Q ss_pred CCeeEEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCC
Q psy12072 18 PAKTILKSVSGRFRAGEL--SAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 18 ~~~~~l~~isl~i~~g~~--~~liG~sGsGKSTll~~i~gl~ 57 (76)
+...+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345678888888999998 9999999999999999999875
No 215
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.93 E-value=3e-06 Score=67.15 Aligned_cols=30 Identities=43% Similarity=0.545 Sum_probs=28.1
Q ss_pred eEEeeeEEEEeCCCEEEEECCCCCCHHHHH
Q psy12072 21 TILKSVSGRFRAGELSAILGPSGAGKSSLL 50 (76)
Q Consensus 21 ~~l~~isl~i~~g~~~~liG~sGsGKSTll 50 (76)
.=|+|||++|+.+++++|.|+||||||||.
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 358999999999999999999999999996
No 216
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.93 E-value=5.3e-06 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999874
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.91 E-value=8.8e-06 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998763
No 218
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.90 E-value=7.6e-06 Score=51.89 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 219
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.88 E-value=8.9e-06 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+-+++|.|++||||||+.+.|+.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHc
Confidence 458999999999999999999864
No 220
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.88 E-value=5.3e-07 Score=57.98 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=30.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+++++++..++.+ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 457888888877764 689999999999999999873
No 221
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.87 E-value=1.1e-05 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
....+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999743
No 222
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.86 E-value=7.5e-06 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-.+++|+|++|||||||++.|.+.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3588999999999999999998864
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.86 E-value=4.1e-06 Score=55.72 Aligned_cols=31 Identities=32% Similarity=0.685 Sum_probs=22.7
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+.+.++.+ +.|.||+|+|||||+++|++..
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 334444444 8899999999999999999874
No 224
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.86 E-value=8.1e-07 Score=64.26 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=31.7
Q ss_pred eEEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCC
Q psy12072 21 TILKSVSGRFRAGEL--SAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 21 ~~l~~isl~i~~g~~--~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 356677778888988 9999999999999999998864
No 225
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.85 E-value=1.1e-05 Score=51.43 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998753
No 226
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.84 E-value=1.1e-05 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.++.+++|.|++||||||+.+.|+-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.84 E-value=8.8e-06 Score=53.59 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHhC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~g 55 (76)
+.++|+||||+|||||++.|..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999998764
No 228
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.84 E-value=7.7e-06 Score=57.85 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=33.9
Q ss_pred CeeEEeeeEEEEe---CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 19 AKTILKSVSGRFR---AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 19 ~~~~l~~isl~i~---~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
+.+++-|. +... .+..+.|+||+||||||+++.++.... ...+.+++.
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEE
Confidence 44555555 2222 566789999999999999999998753 456666653
No 229
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.83 E-value=1.2e-05 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHhC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~g 55 (76)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 230
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.83 E-value=4.7e-06 Score=61.50 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=31.4
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999874
No 231
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.83 E-value=1.1e-05 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57999999999999999999985
No 232
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.83 E-value=1.1e-05 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.6
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
..+.++.|.|++||||||+.+.|+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 456789999999999999999998
No 233
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.82 E-value=1.4e-05 Score=58.27 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=30.6
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC----------cCCCcceEEECC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYE----------KNEKEEEKKKKK 69 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~----------~~~~~G~i~~~~ 69 (76)
.+..+..++|+|++|+|||||++.|++.. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 45677889999999999999999999972 124456666554
No 234
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.82 E-value=1.3e-05 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.8
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.+++.+++|.|++||||||+.+.|+-
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999984
No 235
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.81 E-value=1.2e-05 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.++.+++|.|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999974
No 236
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.80 E-value=3.9e-06 Score=63.93 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.6
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcceE
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNVISGYEKN-EKEEEK 65 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~-~~~G~i 65 (76)
++.+++++.++|+|++|+|||||++.|.+.... ...|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456788999999999999999999999965321 234555
No 237
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.80 E-value=4.5e-06 Score=59.28 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=26.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+.+.++++|.| +|+|++|+|||||++.|.+..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 44667777766 999999999999999998874
No 238
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.79 E-value=1.4e-05 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47899999999999999999864
No 239
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.78 E-value=1.5e-05 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHh
Q psy12072 33 GELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~ 54 (76)
.-+++|.||+||||||+.+.|+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 240
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.78 E-value=1.3e-05 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|+||+|||||||.+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999754
No 241
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.78 E-value=1.4e-05 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 242
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.77 E-value=4.9e-06 Score=53.46 Aligned_cols=23 Identities=48% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.76 E-value=6.3e-06 Score=64.00 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=27.7
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
|.+++++.+.|.||+|||||||+++|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 367899999999999999999999999985
No 244
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.76 E-value=1.9e-05 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHhC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~g 55 (76)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
No 245
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.76 E-value=1.7e-05 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.+.|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.75 E-value=1e-05 Score=54.37 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=30.6
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEECCEe
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~~~~ 71 (76)
..+.+.++.|+|++||||||+.+.|+.... .+.+++++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHH
Confidence 456678999999999999999999987642 2445666544
No 247
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.74 E-value=2.1e-05 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 248
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.73 E-value=1.6e-05 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+.++.|+||+||||||+.+.|+.-
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998754
No 249
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.72 E-value=1.9e-05 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999984
No 250
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.69 E-value=2.6e-05 Score=49.41 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.0
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++.+.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998753
No 251
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.69 E-value=3.1e-05 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.69 E-value=2.8e-05 Score=55.19 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-+++|+++.|.||+|+|||||+..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987777553
No 253
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.68 E-value=1.6e-05 Score=59.60 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=32.4
Q ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhC-CCcCCCcceEEE
Q psy12072 25 SVSGRFRAGELSAILGPSGAGKSSLLNVISG-YEKNEKEEEKKK 67 (76)
Q Consensus 25 ~isl~i~~g~~~~liG~sGsGKSTll~~i~g-l~~~~~~G~i~~ 67 (76)
.+.+++.++..+.|.|++||||||++++|.. +......+++.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 5678888999999999999999999999875 322233455443
No 254
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.68 E-value=2e-05 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999743
No 255
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.67 E-value=3e-05 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998874
No 256
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.67 E-value=2.9e-05 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.0
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.++.+++|.|++||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999973
No 257
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.66 E-value=3e-05 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999773
No 258
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=6.2e-05 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999755543
No 259
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.66 E-value=2.6e-05 Score=47.56 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998864
No 260
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.65 E-value=3.3e-05 Score=46.97 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 261
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.64 E-value=3.4e-05 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.64 E-value=3.3e-05 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 263
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.64 E-value=2.7e-05 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-.++|+|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998874
No 264
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.63 E-value=3.3e-05 Score=47.47 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 265
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.63 E-value=3.7e-05 Score=46.94 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999865
No 266
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.63 E-value=4.5e-05 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.+.+++|.|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999875
No 267
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.62 E-value=5.3e-05 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+.-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999875
No 268
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.62 E-value=2.7e-05 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 269
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.61 E-value=3e-05 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.+.++.|+|++||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999998743
No 270
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.61 E-value=4.1e-05 Score=52.53 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
.++++..+.|.||+|+|||+|+++|+.... ...+.++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~ 81 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIK 81 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEE
Confidence 467888999999999999999999998742 3445554
No 271
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.60 E-value=3.6e-05 Score=47.84 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 272
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.60 E-value=4.1e-05 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHhC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~g 55 (76)
..+++|.|++||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998873
No 273
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.59 E-value=4.3e-05 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 274
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.59 E-value=3.9e-05 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHhC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~g 55 (76)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 275
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.59 E-value=3.3e-05 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 276
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.59 E-value=2.8e-05 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999765
No 277
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.58 E-value=3.5e-05 Score=48.28 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999886
No 278
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.58 E-value=3.3e-05 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999765
No 279
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.58 E-value=3.6e-05 Score=47.89 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998873
No 280
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.58 E-value=5.4e-05 Score=47.19 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHhC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~g 55 (76)
++++|.|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999875
No 281
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.58 E-value=5.1e-05 Score=47.01 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
+++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 282
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.57 E-value=3.5e-05 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999876
No 283
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.57 E-value=3.9e-05 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999986
No 284
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.57 E-value=3.6e-05 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 285
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.57 E-value=5.1e-05 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999963
No 286
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.56 E-value=3.7e-05 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 287
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.56 E-value=4.6e-05 Score=51.07 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.|.|-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999999874
No 288
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.56 E-value=3.7e-05 Score=47.24 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 289
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.56 E-value=3.8e-05 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999987653
No 290
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.55 E-value=3.9e-05 Score=47.16 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 291
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.55 E-value=6.6e-05 Score=48.15 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998764
No 292
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.54 E-value=3.4e-05 Score=46.91 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999865
No 293
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.54 E-value=4.3e-05 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 36899999999999999998863
No 294
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.54 E-value=4e-05 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 295
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.54 E-value=4.1e-05 Score=46.45 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 296
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.54 E-value=4.1e-05 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999876
No 297
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.53 E-value=5.7e-05 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~g 55 (76)
.--+++|.|++||||||+.+.|+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999976
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.53 E-value=6.2e-05 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+++|+|++|||||||+..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999888764
No 299
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.53 E-value=3.6e-05 Score=50.85 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.3
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHh
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~ 54 (76)
+..|+.+.+.||+||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4568999999999999999877654
No 300
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.52 E-value=8e-05 Score=51.76 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5889999999999999999999888754
No 301
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.52 E-value=4.9e-05 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHhC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~g 55 (76)
.+++|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 302
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.52 E-value=3.9e-05 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 303
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.52 E-value=6.5e-05 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 304
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.51 E-value=4.7e-05 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 305
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.51 E-value=5.8e-05 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 306
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.51 E-value=4.6e-05 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 307
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=5.9e-05 Score=53.04 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=25.5
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988764
No 308
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.51 E-value=4.8e-05 Score=46.16 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 309
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.50 E-value=3.7e-05 Score=47.63 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
No 310
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.50 E-value=5.4e-05 Score=51.71 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999864
No 311
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.49 E-value=7.5e-05 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~g 55 (76)
++-+++|.||+||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 312
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.48 E-value=5.2e-05 Score=47.63 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998875
No 313
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.48 E-value=6.5e-05 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..-.++|+|++|+|||||++.+++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999999974
No 314
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.47 E-value=5.6e-05 Score=46.11 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999754
No 315
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.47 E-value=7.8e-05 Score=54.06 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=37.9
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc-eEEEC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEE-EKKKK 68 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G-~i~~~ 68 (76)
...|+++..-+++|+++.|.|++|+|||||+..++.... +..| .+.+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~ 238 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-TKTNENVAIF 238 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-HHSSCCEEEE
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HhCCCcEEEE
Confidence 456778887899999999999999999999999888753 2234 55554
No 316
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.47 E-value=9.9e-05 Score=45.30 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
....+.|.||+|+|||+|++.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999887653
No 317
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.46 E-value=5.8e-05 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4789999999999999999865
No 318
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.46 E-value=8.3e-05 Score=48.88 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999874
No 319
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.46 E-value=6.3e-05 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999987763
No 320
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.45 E-value=5.3e-05 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999754
No 321
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.45 E-value=6.2e-05 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy12072 36 SAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~gl 56 (76)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998753
No 322
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.45 E-value=9.8e-05 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++..+.|.||+|+||||+++.++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46788999999999999999998763
No 323
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.45 E-value=6.7e-05 Score=47.98 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999765
No 324
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=6.3e-05 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 325
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.44 E-value=8.7e-05 Score=46.22 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.-.++|+|++|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 326
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=5.9e-05 Score=50.84 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
..+.|.||+|+||||+.++|+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 5789999999999999999999853
No 327
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.44 E-value=6.5e-05 Score=46.02 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 328
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.44 E-value=3.9e-05 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=18.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.-+++|.|++||||||+.+.|+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 329
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.44 E-value=7.6e-05 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHh
Q psy12072 34 ELSAILGPSGAGKSSLLNVIS 54 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~ 54 (76)
.+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 330
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.44 E-value=6.5e-05 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999765
No 331
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.43 E-value=9.6e-05 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCc
Q psy12072 32 AGE--LSAILGPSGAGKSSLLNVISGYEK 58 (76)
Q Consensus 32 ~g~--~~~liG~sGsGKSTll~~i~gl~~ 58 (76)
.+. .+.|.||+|+|||||++.+++...
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 345 899999999999999999998753
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.43 E-value=9.4e-05 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
-+++|.|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998743
No 333
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.43 E-value=9.2e-05 Score=51.20 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
+++|+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999986
No 334
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.42 E-value=7e-05 Score=46.16 Aligned_cols=22 Identities=41% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998865
No 335
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.42 E-value=9.9e-05 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 336
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.42 E-value=7.1e-05 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 337
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.41 E-value=9.9e-05 Score=51.17 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 338
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.41 E-value=9e-05 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999973
No 339
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.41 E-value=9.7e-05 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998863
No 340
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.41 E-value=7.4e-05 Score=46.70 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 341
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.40 E-value=8.7e-05 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.|.+-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998763
No 342
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.40 E-value=9.4e-05 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHhC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~g 55 (76)
+-++.|+|+.||||||+.+.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.40 E-value=7.4e-05 Score=47.86 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 344
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.40 E-value=7.8e-05 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998864
No 345
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.0001 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 346
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.40 E-value=0.00011 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHhC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~g 55 (76)
.++.|.|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999885
No 347
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.40 E-value=6.7e-05 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998765
No 348
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.40 E-value=7.8e-05 Score=47.08 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998875
No 349
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.39 E-value=9.9e-05 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 350
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.39 E-value=0.00011 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998863
No 351
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.38 E-value=0.00024 Score=50.41 Aligned_cols=36 Identities=31% Similarity=0.189 Sum_probs=31.1
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
....++...+.+ .|.-+.|.|+||+||||+...+..
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 457888888888 788899999999999999988776
No 352
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.38 E-value=3.6e-05 Score=56.56 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKK 68 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~~ 68 (76)
++.+++++||+|+||||++..|+.... +..+.+.+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 578999999999999999999998864 346666553
No 353
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=7.5e-05 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5789999999999999999864
No 354
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.38 E-value=8.5e-05 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998763
No 355
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.37 E-value=0.00012 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 356
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.37 E-value=0.00011 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.++|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999984
No 357
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.37 E-value=2.3e-05 Score=58.11 Aligned_cols=33 Identities=27% Similarity=0.628 Sum_probs=25.9
Q ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 23 l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+.++.+.+++| +.|.||+|+|||||+++|++..
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 33445555665 7899999999999999999863
No 358
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.37 E-value=0.00012 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999998854
No 359
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.37 E-value=0.00013 Score=52.57 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.9
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
-....++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345679999999999999999998753
No 360
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.37 E-value=0.00015 Score=47.70 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.+..+.|+|+.||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998743
No 361
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.36 E-value=9.1e-05 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 362
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=8.1e-05 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999765
No 363
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.35 E-value=9.6e-05 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 364
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.35 E-value=0.00016 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..+.|.||+|+|||+|+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998764
No 365
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00012 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 366
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.35 E-value=5e-05 Score=48.74 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 367
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.34 E-value=0.00012 Score=46.69 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 368
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.34 E-value=0.00014 Score=49.15 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999963
No 369
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.34 E-value=0.00013 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|.+|+|||||++.+.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999873
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.34 E-value=8.6e-05 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998865
No 371
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.33 E-value=0.00018 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.+.|.||+|+|||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998765
No 372
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00016 Score=48.36 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.1
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+.+..-+.|.||+|+|||+|++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566778999999999999999998764
No 373
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.33 E-value=0.00015 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999875
No 374
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.33 E-value=9e-05 Score=47.11 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57999999999999999998763
No 375
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.32 E-value=0.0001 Score=46.68 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999865
No 376
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00011 Score=45.83 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999865
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.32 E-value=0.00012 Score=45.22 Aligned_cols=21 Identities=43% Similarity=0.352 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999884
No 378
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.32 E-value=0.00011 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 379
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.32 E-value=0.00011 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 380
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.31 E-value=0.00013 Score=49.26 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=21.1
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+..+|.+++|.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887553
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.31 E-value=0.00014 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
..++|+|+.|+|||||++.+++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999988764
No 382
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=0.00012 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999998765
No 383
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=9.8e-05 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999999875
No 384
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.31 E-value=0.00012 Score=49.21 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|..++|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 385
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.30 E-value=0.00014 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999885
No 386
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.30 E-value=0.00017 Score=47.91 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999987653
No 387
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.00025 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.2
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHH
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVI 53 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i 53 (76)
=+++|+++.|.|++|+|||+|.--+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 4899999999999999999997544
No 388
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.29 E-value=0.00011 Score=52.85 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy12072 36 SAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~gl 56 (76)
++|+|++|+|||||++.|.+.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999886
No 389
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.29 E-value=0.00014 Score=44.85 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
....+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999887653
No 390
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.29 E-value=0.0001 Score=46.79 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 391
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.29 E-value=0.00012 Score=46.70 Aligned_cols=21 Identities=38% Similarity=0.752 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
.++|+|++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 392
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00016 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+.+++|.|+.||||||+.+.|+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999998855
No 393
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.29 E-value=0.00012 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 394
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.29 E-value=0.00012 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36799999999999999999865
No 395
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.29 E-value=0.00012 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 396
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.28 E-value=0.00024 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.28 E-value=0.00012 Score=49.00 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999887654
No 398
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.28 E-value=8.4e-05 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 399
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.27 E-value=0.00016 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 400
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.26 E-value=0.00022 Score=46.82 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=22.7
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++...-+.|.||+|+|||++.+.++..
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345566889999999999999999875
No 401
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.26 E-value=9.3e-05 Score=45.87 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=9.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 402
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.26 E-value=0.0002 Score=49.35 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=24.3
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987764
No 403
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.25 E-value=9.5e-05 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 404
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.24 E-value=0.00023 Score=49.44 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=30.4
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
...|+.+..-+++|+++.|.|++|+|||||+..++..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456666666999999999999999999998777643
No 405
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.24 E-value=0.00016 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 406
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.00013 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 407
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.00013 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988754
No 408
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.23 E-value=0.00035 Score=47.14 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=29.0
Q ss_pred CeeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 19 ~~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
....++...+.+ .|..+.|+||+|+|||||...|+..
T Consensus 21 ~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 21 ERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred cceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345666666555 5788999999999999999888764
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.23 E-value=0.0002 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+++|+||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999888653
No 410
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.23 E-value=0.00022 Score=48.32 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999987654
No 411
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.23 E-value=0.00016 Score=45.63 Aligned_cols=22 Identities=45% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5789999999999999888754
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.22 E-value=0.00021 Score=46.16 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998763
No 413
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.22 E-value=0.00018 Score=48.31 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=23.6
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
+-.+++..++.|+||.||||+|..+.|+-
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33556777899999999999999988873
No 414
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.22 E-value=0.00016 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+..+.|.||+|+|||||++.|+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578899999999999999999764
No 415
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.21 E-value=0.00019 Score=48.17 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.+.+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 416
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.21 E-value=0.00016 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 417
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.21 E-value=0.00021 Score=48.04 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.20 E-value=0.00023 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++.+++|+||+|||||||...|+.-.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999774
No 419
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.19 E-value=0.00015 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999876
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.19 E-value=0.00027 Score=47.10 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+|.++++-|++||||||+.+.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987654
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.18 E-value=0.00028 Score=47.27 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+|.++++.|++||||||+.+.|+-.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999988764
No 422
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.17 E-value=0.00016 Score=45.96 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 423
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00017 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 424
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.17 E-value=0.00025 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
-.++|+|++|+|||||++.++.-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999888754
No 425
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.16 E-value=0.00016 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998654
No 426
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.15 E-value=0.0002 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
-.++|+|++|+|||||++.|.|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999886
No 427
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.14 E-value=0.00024 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
-.++|+|.+++|||||++.|.+-
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999983
No 428
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.13 E-value=0.00033 Score=47.22 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.4
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-.+|.+++|.|++||||||+.+.|+..+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999987543
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.13 E-value=0.00031 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+++|+||+|||||||...|+--
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999999998865
No 430
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00032 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 431
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.12 E-value=8.4e-05 Score=46.74 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=4.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988776
No 432
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00024 Score=45.94 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.10 E-value=0.00033 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+++|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998653
No 434
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.07 E-value=0.00047 Score=51.38 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=28.4
Q ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 22 ~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++.+ +.+-+|+..+|+|++|+|||||++.|+...
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34333 466789999999999999999999888764
No 435
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.06 E-value=0.00025 Score=45.28 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4789999999999999998765
No 436
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00039 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.+.|.||.|+|||++++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998764
No 437
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.05 E-value=0.00037 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-.++++|.+|+|||||++.|.+-.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999874
No 438
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.04 E-value=0.0003 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999988765
No 439
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.0003 Score=48.11 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999998764
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.02 E-value=0.00037 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999887643
No 441
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.01 E-value=0.00062 Score=48.53 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.7
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
-+++|+++.|.|++|+|||||...++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999998777654
No 442
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.00 E-value=7.3e-05 Score=58.07 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=27.8
Q ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 27 SGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 27 sl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++.+.+++.+.|.||+|+|||||.++|++..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 5567889999999999999999999999874
No 443
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.00 E-value=0.00049 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
++.|+||.||||+|..+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999888743
No 444
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.99 E-value=0.00051 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+++|+||+|||||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 347899999999999999998855
No 445
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.98 E-value=0.00042 Score=44.08 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 446
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.97 E-value=0.00042 Score=50.19 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..+.|.||+|+|||||+++|+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999864
No 447
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.97 E-value=0.00058 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++..+.|.||+|+|||++.+.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44568899999999999998877653
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00052 Score=46.70 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=26.5
Q ss_pred EEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 22 ILKSVSGRFRAG--ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 22 ~l~~isl~i~~g--~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+++.+.-.+..+ ..+.|.||+|+||||+++.++...
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444555 348899999999999999998874
No 449
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.93 E-value=0.00052 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
.+++|+||+|+|||||...|+-.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999888754
No 450
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.92 E-value=0.0001 Score=46.74 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 451
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.90 E-value=0.00058 Score=49.32 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=30.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
...|+.+.--+++|+++.|.|++|+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34556666569999999999999999999988777653
No 452
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.90 E-value=0.00077 Score=47.77 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.4
Q ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 24 ~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
..+.++++----++|+|.+++|||||++.+++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 456667766666899999999999999999875
No 453
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.89 E-value=0.00069 Score=44.63 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
|.+++|=|+.||||||+.+.|+-.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999888654
No 454
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.89 E-value=0.00046 Score=48.32 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|..++|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 455
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.88 E-value=0.00034 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHH-HhC
Q psy12072 35 LSAILGPSGAGKSSLLNV-ISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~-i~g 55 (76)
.++|+|++|+|||||++. +.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999997 444
No 456
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.88 E-value=0.00082 Score=45.28 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+.++.|.||.|+|||||++.++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999988643
No 457
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.87 E-value=0.00073 Score=46.51 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++..+.|.||+|+|||++.+.++...
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999998764
No 458
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.00077 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
...+.|.||+|+|||||++.++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999865
No 459
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.86 E-value=0.00071 Score=45.16 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..-+.|.||+|+|||++.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467799999999999999998764
No 460
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.85 E-value=0.00071 Score=48.15 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=34.8
Q ss_pred eeEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Q psy12072 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKK 67 (76)
Q Consensus 20 ~~~l~~isl~i~~g~~~~liG~sGsGKSTll~~i~gl~~~~~~G~i~~ 67 (76)
...|+.+..-+.+|+++.|.|++|+|||||+..++..... ..+.+.+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~ 79 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAV 79 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEE
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 4456666667999999999999999999999877765322 2344544
No 461
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.85 E-value=0.00079 Score=46.72 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+..-+.|.||+|+|||+|.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999753
No 462
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.85 E-value=0.00074 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.4
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++...+.|.||+|+|||+|.+.|+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33456778899999999999999865
No 463
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.83 E-value=0.00078 Score=47.33 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.-+++|+|+.|+|||||++.|+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998754
No 464
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.82 E-value=0.0008 Score=41.35 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+.-+.|.||+|+|||++.+.|+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 44567899999999999999998763
No 465
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.81 E-value=0.00026 Score=46.98 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q psy12072 36 SAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 36 ~~liG~sGsGKSTll~~i~gl 56 (76)
+.|.||+|+|||+|.+.|+..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999864
No 466
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.81 E-value=0.00061 Score=49.04 Aligned_cols=22 Identities=41% Similarity=0.678 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++++|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999886
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.81 E-value=0.00096 Score=43.08 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCCHHHHH-HHHhC
Q psy12072 32 AGELSAILGPSGAGKSSLL-NVISG 55 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll-~~i~g 55 (76)
+|.++.+.||.|+||||++ +.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997 55543
No 468
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.84 E-value=0.00019 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5789999999999999888754
No 469
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.80 E-value=0.00077 Score=46.43 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
-.++|+|++|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999997665
No 470
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.80 E-value=0.00081 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|.+|+|||||+|.|.|-.
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEecCCCchHHHHHHHhcCc
Confidence 58999999999999999999874
No 471
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.78 E-value=0.00077 Score=45.00 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+...+.|.||+|+|||+|.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446789999999999999999875
No 472
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.78 E-value=0.00075 Score=48.63 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|.+++|||||++.|.+-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37899999999999999999863
No 473
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.76 E-value=0.0011 Score=46.40 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 31 RAGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 31 ~~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+..-+.|.||+|+|||+|.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678899999999999999998753
No 474
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.76 E-value=0.00091 Score=46.62 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+..-+.|.||+|+|||++.+.|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999998764
No 475
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.75 E-value=0.0011 Score=45.56 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+..-+.|.||+|+|||+|.+.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999865
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.71 E-value=0.0013 Score=45.61 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999998753
No 477
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.68 E-value=0.0011 Score=47.44 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.5
Q ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhC
Q psy12072 28 GRFRAGELSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 28 l~i~~g~~~~liG~sGsGKSTll~~i~g 55 (76)
--+++|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4678888899999999999999988864
No 478
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.67 E-value=0.0011 Score=45.29 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
..+.|.||+|+|||+|++.|+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 357899999999999999998653
No 479
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.65 E-value=0.001 Score=49.81 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-.++|+|..|+|||||++.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999873
No 480
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.64 E-value=0.00093 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
.+..++++|++|+|||||+|.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567899999999999999999875
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.64 E-value=0.0016 Score=46.62 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.0
Q ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 29 RFRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 29 ~i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
-+++|+++.|.||+|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999998666543
No 482
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.63 E-value=0.0012 Score=46.03 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
...+.|.||+|+|||++.+.|+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999998764
No 483
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.63 E-value=0.0013 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHhCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl 56 (76)
.++.|.||.|+|||||++.++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999988754
No 484
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.63 E-value=0.0013 Score=50.46 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
++.++.|.|.+||||||+.+.|+-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999997653
No 485
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.63 E-value=0.00081 Score=49.43 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++|+|||||++.+.+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 486
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.62 E-value=0.001 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 34 ELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 34 ~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
-.++|+|+.++|||||+|.|.|-.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 367899999999999999999974
No 487
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.60 E-value=0.0013 Score=49.60 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+.++.|.|++||||||+.+.|+..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 35588999999999999999998653
No 488
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.60 E-value=0.0015 Score=46.60 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++++|+.++|||||++.|.+.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5799999999999999999985
No 489
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.58 E-value=0.0013 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+-.++|+|+.++|||||++.|.|-.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999874
No 490
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.56 E-value=0.00091 Score=51.80 Aligned_cols=27 Identities=15% Similarity=0.498 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 30 FRAGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 30 i~~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
+..++.+.|+||+||||||++..+...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999888654
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.55 E-value=0.0015 Score=46.99 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|.+++|||||++.+.+-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.52 E-value=0.0016 Score=44.21 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHhC
Q psy12072 35 LSAILGPSGAGKSSLLNVISG 55 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~g 55 (76)
..+|+|+.||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 579999999999999998854
No 493
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.52 E-value=0.0016 Score=45.76 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
+..-+.|.||+|+|||+|.+.++...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34457899999999999999998753
No 494
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.52 E-value=0.0011 Score=48.83 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|++++|||||++.+.+-
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999887
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.52 E-value=0.0025 Score=42.28 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.+..+.|.||+|+|||++.+.|+...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 34567899999999999999998774
No 496
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.50 E-value=0.0011 Score=44.82 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 33 GELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 33 g~~~~liG~sGsGKSTll~~i~gl 56 (76)
...+.|.||+|+|||++++.++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999754
No 497
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.48 E-value=0.0017 Score=47.73 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGYE 57 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl~ 57 (76)
.++|+|..|+|||||++.+.+-.
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 498
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.47 E-value=0.0011 Score=47.20 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Q psy12072 32 AGELSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 32 ~g~~~~liG~sGsGKSTll~~i~gl 56 (76)
++..++++|.+|+|||||+|.|.+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4567899999999999999999875
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.47 E-value=0.002 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.++|+|.+++|||||++.+.+-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 500
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.46 E-value=0.0026 Score=43.56 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHhCC
Q psy12072 35 LSAILGPSGAGKSSLLNVISGY 56 (76)
Q Consensus 35 ~~~liG~sGsGKSTll~~i~gl 56 (76)
.+.|.||.|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
Done!