RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12072
(76 letters)
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 60.3 bits (147), Expect = 5e-13
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
T L +SG RAGE+ ++GP+GAGKS+LL ++G
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 55.3 bits (134), Expect = 4e-11
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
KTILK +S + G+ + G +GAGK++LLN+++ YE
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 50.4 bits (121), Expect = 3e-09
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK-NEKEEEKKKKKKEKEKK 75
+L G F E+ ++G +G GK++L+ +++G K +E ++ K K +K
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK 421
Score = 40.0 bits (94), Expect = 1e-05
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 31 RAGELSAILGPSGAGKSSLLNVISGY 56
R G++ ++G +G GKS+ L +++G
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGK 126
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 47.6 bits (114), Expect = 2e-08
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57
+L +S GE+ I+G SG GK++LL ++G+E
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 47.3 bits (113), Expect = 3e-08
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
++F N +LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 47.2 bits (113), Expect = 3e-08
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
+ + ++ G++ A+LG +G GKS+LL+++ G +
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein; structural genomics; 1.70A {Aquifex aeolicus}
PDB: 2pcl_A
Length = 224
Score = 46.7 bits (112), Expect = 4e-08
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
ILK +S + GE +I+G SG+GKS+LL ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 47.2 bits (113), Expect = 4e-08
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
++ VS + R GE+ +LGPSG+GK+++L +I+G E+
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 46.7 bits (112), Expect = 4e-08
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
+TILK V+ GE+ A++GP+GAGKS+L +++G +
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE 54
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 46.7 bits (112), Expect = 5e-08
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
+K + + G++ ++G +GAGK++ L+ I+G
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 46.4 bits (111), Expect = 7e-08
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
K IL+ +S GE+ AI+GP+G+GKS+L ++G E
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED 71
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 46.0 bits (110), Expect = 7e-08
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
V F LKS++ +G A++G +G+GKS++ ++
Sbjct: 23 VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 45.6 bits (109), Expect = 1e-07
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+V+ + GE +I+GPSG+GKS++LN+I
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 45.6 bits (109), Expect = 1e-07
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
V+F + ILK ++ GE A +G SG GKS+L+N+I
Sbjct: 345 VSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 45.8 bits (109), Expect = 1e-07
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
L+ G R GE+ I+GP+G GK++ + +++G E+
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407
Score = 40.4 bits (95), Expect = 9e-06
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
+ + G + I+GP+G GK++ + +++G
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 45.7 bits (109), Expect = 1e-07
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+ L+ VS G+ A++GPSGAGKS++L ++
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 45.2 bits (108), Expect = 1e-07
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
VT F E LK ++ + G+L A+ G +GAGK+SLL +I G
Sbjct: 12 VTAFWEEGGTPV-LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 45.3 bits (108), Expect = 2e-07
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 6 HVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
VT F K L VS G+ A++G SG+GKS++ N+
Sbjct: 346 DVT----FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 45.4 bits (108), Expect = 2e-07
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
L+ G + GE+ I+GP+G GK++ + +++G E+
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE 337
Score = 35.7 bits (83), Expect = 5e-04
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 31 RAGELSAILGPSGAGKSSLLNVISG------YEKNEKEEEKKKKKKEKE 73
+ G + I+GP+G GKS+ + +++G N+ + + + E
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 45.3 bits (108), Expect = 2e-07
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 13 FNEPS-PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
F P+ P I + S +G ++A++GPSG+GKS++L+++
Sbjct: 349 FAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 44.9 bits (107), Expect = 2e-07
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 6 HVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+VT F P L++++ + AG+ A++G SG+GKS++ ++I
Sbjct: 346 NVT----FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 45.0 bits (107), Expect = 2e-07
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 13 FNEPS-PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
F+ PS ILK ++ + ++G+ A++G SG GKS+ + ++
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Score = 40.4 bits (95), Expect = 9e-06
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 13 FNEPS-PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
FN P+ P+ +L+ +S + G+ A++G SG GKS+++ ++
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 44.4 bits (106), Expect = 4e-07
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+ F +P + IL +++ + GE+ I+G SG+GKS+L +I
Sbjct: 13 IRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 43.6 bits (104), Expect = 5e-07
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
V F + S IL+ +S + + A GPSG GKS++ +++
Sbjct: 7 VDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 43.7 bits (104), Expect = 6e-07
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
TF S T L ++ G L A++G G GKSSLL+ +
Sbjct: 9 ATFTWARSDPPT-LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 43.5 bits (103), Expect = 9e-07
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEKK 75
L +G + GE+ ILGP+G GK++ ++ G ++ +K+ K
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKP 336
Score = 40.4 bits (95), Expect = 9e-06
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 31 RAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEKKK 76
+ + +LG +G GK+++L +++G + K K++ K+
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKR 68
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 13 FNEPS-PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
F P+ P +L+ ++ G+++A++GP+G+GKS++ ++
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 42.1 bits (100), Expect = 2e-06
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
L VS G+++ I+GP+G+GKS+L+NVI+G
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 42.2 bits (100), Expect = 2e-06
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57
L ++S + +GE ILGP+GAGK+ L +I+G+
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type
I ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 41.5 bits (98), Expect = 4e-06
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 8 TMVTF------FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
M+ F++ + L +VS AG++ ++G SGAGKS+L+ ++ E+
Sbjct: 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 41.4 bits (98), Expect = 4e-06
Identities = 11/38 (28%), Positives = 26/38 (68%)
Query: 17 SPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVIS 54
K +LK ++ + G+ A++GP+G+GK++++N++
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 41.1 bits (97), Expect = 4e-06
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 32 AGELSAILGPSGAGKSSLLNVISGYEKN 59
G +S G SG GKSSLLN + G +
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLGLQNE 241
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 41.2 bits (96), Expect = 5e-06
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
F P +K + ++ + A++GP+GAGKS+L+NV++G
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
Score = 37.3 bits (86), Expect = 1e-04
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 16 PSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57
AK +L R + I GP+G GKS+L+ I+ +
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ 485
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 41.2 bits (97), Expect = 5e-06
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 13 FNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE 60
+ + L++++ GE ILGP+G+GK++LL ISG
Sbjct: 11 LSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS 57
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP:
c.37.1.12
Length = 240
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 32 AGELSAILGPSGAGKSSLLNVISGYEK 58
+ +LGP+GAGKS L +I+G K
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVK 49
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 39.9 bits (94), Expect = 1e-05
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 6 HVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+V F +L V+ + G L A+LG +G+GKS+L+N+I
Sbjct: 346 NVE----FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 39.9 bits (94), Expect = 1e-05
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 32 AGELSAILGPSGAGKSSLLNVISG 55
+ + G SG GKSSLLN IS
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAISP 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 39.8 bits (94), Expect = 1e-05
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 32 AGELSAILGPSGAGKSSLLNVI 53
G++S + G SG GKSSLLN I
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAI 189
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 39.5 bits (93), Expect = 2e-05
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 32 AGELSAILGPSGAGKSSLLNVISG 55
G + + GPSG GKSS+L+ ++G
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTG 187
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 39.5 bits (93), Expect = 2e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
+LK VS + RAG++ +I+G SG+GKS+ L I+ EK
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 38.9 bits (91), Expect = 3e-05
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
IL+++S G+ +LG +G+GKS+LL+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 38.4 bits (90), Expect = 4e-05
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 16 PSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
L +V+ GE ILGPSGAGK++ + +I+G +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 38.3 bits (90), Expect = 4e-05
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 22 ILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
+LK ++ R GE+ ++GPSG+GKS+ L ++ E
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 37.2 bits (87), Expect = 1e-04
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1 MSLQT-HVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
M ++ +V+ F K L++VS GE + G +G+GKS+LL +++G
Sbjct: 1 MRIEVVNVS-HIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii}
Length = 362
Score = 36.8 bits (86), Expect = 2e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEK 58
T L +++ + + GE A+LGPSG+GKS+LL I+G K
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54
>1sgw_A Putative ABC transporter; structural genomics, P protein
structure initiative, southeast collaboratory for S
genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP:
c.37.1.12
Length = 214
Score = 36.7 bits (86), Expect = 2e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
K +L+ ++ G + GP+G GK++LL IS Y
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 36.4 bits (85), Expect = 2e-04
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
LK ++ + GE++AILG +G GKS+L +G
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 35.7 bits (83), Expect = 4e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57
T ++ +S + GE +LGPSG GK++ L +I+G E
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLN 51
L ++ RF G ++++ G SG+GKS+L++
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
Score = 24.8 bits (55), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSL 49
LK +S + L G SG+GKSSL
Sbjct: 26 LKDISVKVPRDALVVFTGVSGSGKSSL 52
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 35.6 bits (83), Expect = 5e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57
+ K ++ GE +GPSG GKS+LL +I+G E
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 35.3 bits (82), Expect = 5e-04
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 21 TILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57
+ VS + GE A+LGPSG GK++ L +++G
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 34.7 bits (81), Expect = 8e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK++ G + G SG+GKSSL+
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMET 630
Score = 25.1 bits (56), Expect = 2.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 38 ILGPSGAGKSSL 49
I G SG+GKSSL
Sbjct: 29 ITGVSGSGKSSL 40
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 34.9 bits (81), Expect = 9e-04
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYE 57
T + ++ + GE +LGPSG GK++ L +I+G E
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
L+ + F G L+++ G SG+GKS+L+N I
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Score = 29.0 bits (66), Expect = 0.090
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLN 51
L+SV L G SG+GKSSL
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAF 64
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO
joint center for structural genomics, JCSG, protein
structu initiative, PSI; 2.10A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 256
Score = 34.4 bits (80), Expect = 0.001
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 20 KTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGY 56
K ILK +S GE+ ++GP+GAGK++ L +IS
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+VS + G A+ G SG+GKS+L+N +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
Score = 28.2 bits (64), Expect = 0.18
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSL 49
LK++ G+L + G SG+GKSSL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 37 AILGPSGAGKSSLLNVISGYEK 58
AI+G GKSSLLN S ++
Sbjct: 228 AIVGRPNVGKSSLLNAWSQSDR 249
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 34.5 bits (80), Expect = 0.001
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 37 AILGPSGAGKSSLLNVISGYEK 58
I+G GKS+LLN + ++
Sbjct: 247 VIVGKPNVGKSTLLNRLLNEDR 268
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.4 bits (80), Expect = 0.001
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 37 AILGPSGAGKSSLLNVISGYEK 58
I G AGKSSLLN ++G E
Sbjct: 8 VIAGRPNAGKSSLLNALAGREA 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 37 AILGPSGAGKSSLLNVISGYEK 58
I G AGKS+LLN + G E+
Sbjct: 237 VIAGKPNAGKSTLLNTLLGQER 258
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 34.4 bits (80), Expect = 0.001
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
LK+VS + G A+ G SG+GKS+L+N +
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368
Score = 23.6 bits (52), Expect = 8.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLN--VISGYEKNEKEEEKKKKKKEKEK 74
LK++ G+L + G SG+GKSSL + + ++ E ++ +
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQ 87
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 34.3 bits (78), Expect = 0.001
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 37 AILGPSGAGKSSLLNVISGYEKNEKE 62
A+ G +G+GKSS +N + G E+
Sbjct: 73 AVTGETGSGKSSFINTLRGIGNEEEG 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.4 bits (73), Expect = 0.006
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 1 MSLQTHVTMVTFF-NEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLL 50
M+ + ++ F P P +L AG + A++ P GAGKS L
Sbjct: 1 MATHKPINILEAFAAAPPPLDYVL----PNMVAGTVGALVSPGGAGKSMLA 47
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 31.3 bits (71), Expect = 0.016
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 37 AILGPSGAGKSSLLNVISGYEK 58
+LG G GKSS +N + G +
Sbjct: 40 LVLGKGGVGKSSTVNSLIGEQV 61
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 30.7 bits (69), Expect = 0.023
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 37 AILGPSGAGKSSLLNVI 53
IL GAGKS ++
Sbjct: 39 TILAKPGAGKSFTAKML 55
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 30.7 bits (69), Expect = 0.026
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 37 AILGPSGAGKSSLLNVISGYEK 58
++G G GKSS +N I G
Sbjct: 43 LVMGKGGVGKSSTVNSIIGERV 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.028
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 3 LQTHVTMVTFFNEPSPAK-TILKSVSGRFRAGELSAILGPSGAGKSSL-LNVISGYE 57
L + +N L+ R + I G G+GK+ + L+V Y+
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.2 bits (69), Expect = 0.033
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 1 MSLQTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNE 60
M+ H M T + ++LK G + + PSG GK+++ N + +KN
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMLK------SVGVILVLSSPSGCGKTTVANKLLEKQKNN 54
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 30.2 bits (69), Expect = 0.034
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 14 NEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLN 51
+ T + G + + GPS GKS+++
Sbjct: 1 SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVR 38
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.9 bits (68), Expect = 0.051
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 29 RFRAGELSAILGPSGAGKSSLLN 51
F+ + ++G SG G+S + N
Sbjct: 15 YFQGRKTLVLIGASGVGRSHIKN 37
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.7 bits (67), Expect = 0.058
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 38 ILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKE 71
GP +GK++ L I ++ E E
Sbjct: 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATE 52
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 29.3 bits (67), Expect = 0.073
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 37 AILGPSGAGKSSL 49
I GPS +GKSS+
Sbjct: 6 TIDGPSASGKSSV 18
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.4 bits (67), Expect = 0.074
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 31 RAGELSAILGPSGAGKSSLLN 51
G L + GPSG GK ++
Sbjct: 6 ERGLLIVLSGPSGVGKGTVRE 26
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.0 bits (66), Expect = 0.082
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 31 RAGELSAILGPSGAGKSSLLN 51
G L + GPSG GK ++
Sbjct: 4 EKGLLIVLSGPSGVGKGTVRK 24
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 29.3 bits (66), Expect = 0.085
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 38 ILGPSGAGKSSLLNVISGY 56
++G + +GK++ LN I +
Sbjct: 265 VVGETASGKTTTLNAIMMF 283
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 29.1 bits (65), Expect = 0.089
Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 30 FRAGELSAILGPSGAGKSSLL 50
F++G ++ + GP+GAGKSSL
Sbjct: 21 FQSG-ITVVEGPNGAGKSSLF 40
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.2 bits (65), Expect = 0.089
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 38 ILGPSGAGKSSLLNVI 53
++G SG+GKSS+ ++I
Sbjct: 8 LMGRSGSGKSSMRSII 23
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 29.0 bits (66), Expect = 0.098
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 37 AILGPSGAGKSSL 49
A+ GP+G GKSS+
Sbjct: 13 AVDGPAGTGKSSV 25
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 28.9 bits (64), Expect = 0.10
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 35 LSAILGPSGAGKSSLLNVI 53
++ I+G +G+GKSSLL+ I
Sbjct: 25 INLIIGQNGSGKSSLLDAI 43
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 29.0 bits (66), Expect = 0.10
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 37 AILGPSGAGKSSLLNVISGYE 57
AI+G GKS+L N I E
Sbjct: 184 AIVGRPNVGKSTLFNAILNKE 204
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 29.0 bits (66), Expect = 0.10
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 37 AILGPSGAGKSSLLNVISGYE 57
++G GKSSL+N + G E
Sbjct: 179 CLIGRPNVGKSSLVNAMLGEE 199
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 28.6 bits (65), Expect = 0.12
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 33 GELSAILGPSGAGKSSLLN 51
+ GPSGAGKS+LL
Sbjct: 4 PRPVVLSGPSGAGKSTLLK 22
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 28.6 bits (65), Expect = 0.12
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 37 AILGPSGAGKSSL 49
AI GP+ +GKS++
Sbjct: 20 AIDGPASSGKSTV 32
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 28.6 bits (65), Expect = 0.13
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 37 AILGPSGAGKSSL 49
I GPSGAGK +L
Sbjct: 9 TIDGPSGAGKGTL 21
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 28.6 bits (65), Expect = 0.14
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 37 AILGPSGAGKSSL 49
A+ GP+ AGKS++
Sbjct: 7 ALDGPAAAGKSTI 19
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 28.3 bits (64), Expect = 0.15
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEK 61
+ G L + PSGAGKSSL+ + +
Sbjct: 2 GSDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYD 44
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA
maturation, GTP-binding domain, maturation enzyme,
oxidoreductase; 2.99A {Thermotoga neapolitana}
Length = 423
Score = 28.5 bits (64), Expect = 0.15
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 37 AILGPSGAGKSSLLNVISG 55
+ G GKSS +N + G
Sbjct: 38 VVAGRRNVGKSSFMNALVG 56
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 28.2 bits (64), Expect = 0.18
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 38 ILGPSGAGKSSLLN 51
+LG G G+ + N
Sbjct: 10 LLGAHGVGRRHIKN 23
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 28.2 bits (64), Expect = 0.19
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 31 RAGELSAILGPSGAGKSSLLNVISGYEKN 59
L I PSGAGK+SL+ +
Sbjct: 5 NKANLFIISAPSGAGKTSLVRALVKALAE 33
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.1 bits (62), Expect = 0.19
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 38 ILGPSGAGKSSLLNVI 53
++G GKSS+ V+
Sbjct: 4 LMGVRRCGKSSICKVV 19
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 27.8 bits (63), Expect = 0.20
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 40 GPSGAGKSSLLN 51
GPSG GKS+LL
Sbjct: 8 GPSGTGKSTLLK 19
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.0 bits (62), Expect = 0.22
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 37 AILGPSGAGKSSLLNVISGYEK 58
++G +GAGKS+ N I G +
Sbjct: 33 VLVGKTGAGKSATGNSILGRKV 54
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.0 bits (62), Expect = 0.22
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 28 GRFRAGELSAILGPSGAGKSSLL 50
G F + G +G GK+ L+
Sbjct: 276 GGFFKDSIILATGATGTGKTLLV 298
Score = 24.5 bits (53), Expect = 4.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 30 FRAGELSAILGPSGAGKSSLL 50
G + + G SG GK+
Sbjct: 36 LPIGRSTLVSGTSGTGKTLFS 56
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 0.23
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 57 EKNEKEEEKKKKKKEKEKK 75
E + + +++ +EK KK
Sbjct: 100 ELDAASKVMEQEWREKAKK 118
Score = 26.7 bits (58), Expect = 0.70
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 53 ISGYEKNEKEEEKKKKKKEKEKKK 76
I+ ++ +E E +K +E+++K+
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKR 97
Score = 25.5 bits (55), Expect = 1.8
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 57 EKNEK------EEEKKKKKKEKEKKK 76
E+ K K +++ +EK K
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAK 117
Score = 24.3 bits (52), Expect = 5.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 57 EKNEKEEEKKKKKKEKEK 74
K ++E ++K KK+ E+
Sbjct: 105 SKVMEQEWREKAKKDLEE 122
Score = 24.0 bits (51), Expect = 6.1
Identities = 4/21 (19%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 56 YEK-NEKEEEKKKKKKEKEKK 75
++ +E+ E+ K + +K
Sbjct: 124 NQRQSEQVEKNKINNRIADKA 144
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.9 bits (62), Expect = 0.23
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 37 AILGPSGAGKSSL 49
I G +G GKS L
Sbjct: 151 TIYGMAGCGKSVL 163
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.7 bits (61), Expect = 0.25
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 32 AGELSAILGPSGAGKSSL 49
G + + G G+GKS++
Sbjct: 8 GGNILLLSGHPGSGKSTI 25
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 0.27
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 37 AILGPSGAGKSSLLNVI 53
I G S +GK++L N +
Sbjct: 26 GIDGLSRSGKTTLANQL 42
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.6 bits (61), Expect = 0.29
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 38 ILGPSGAGKSSLLNVI 53
++G +GKSS+ V+
Sbjct: 25 LMGLRRSGKSSIQKVV 40
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 27.6 bits (62), Expect = 0.30
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 38 ILGPSGAGKSSLLN 51
ILG SG GK+SL+N
Sbjct: 13 ILGDSGVGKTSLMN 26
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.7 bits (61), Expect = 0.31
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 38 ILGPSGAGKSSLLNVISGYEKNEKE 62
+G +G+GK++L Y ++ +
Sbjct: 19 FVGTAGSGKTTLTGEFGRYLEDNYK 43
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.4 bits (61), Expect = 0.37
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 48 SLLNVISGYEKNEKEEEKKKKKKEKEKKK 76
+L+++ +E E +EEK +++KE ++ +
Sbjct: 520 TLVDITKDFELEETDEEKAEREKEIKEYE 548
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.5 bits (61), Expect = 0.37
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 38 ILGPSGAGKSSLLNV 52
++G +G GK++
Sbjct: 928 LVGKAGCGKTATWKT 942
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.4 bits (61), Expect = 0.38
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 23 LKSVSGRFRAGELS-AILGPSGAGKSSLLN 51
L SG + + S I GP +GK+SLL
Sbjct: 37 LGGGSGGGGSYQPSIIIAGPQNSGKTSLLT 66
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 27.1 bits (61), Expect = 0.38
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 40 GPSGAGKSSLLN 51
GPSG GK +L+
Sbjct: 19 GPSGVGKGTLIK 30
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 27.1 bits (61), Expect = 0.39
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 38 ILGPSGAGKSSLLN 51
+LG G GKSSL+N
Sbjct: 12 LLGDGGVGKSSLMN 25
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 27.0 bits (60), Expect = 0.40
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 30 FRAGELSAILGPSGAGKSSLLNVIS 54
F+ G ++ I+G +G+GKSSLL+ I
Sbjct: 21 FKEG-INLIIGQNGSGKSSLLDAIL 44
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.4 bits (61), Expect = 0.41
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+ +L+ + R +L A+ G G+GKS+L N +
Sbjct: 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPL 42
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.1 bits (61), Expect = 0.48
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 40 GPSGAGKSSLLN 51
GPSG GK +L+
Sbjct: 30 GPSGVGKGTLIK 41
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase,
amino-acid biosynthesis, transferase, feedback
regulation, PUA domain; HET: RGP; 2.5A {Escherichia
coli} PDB: 2j5t_A* 2w21_A
Length = 367
Score = 27.1 bits (61), Expect = 0.49
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 24 KSVSGRFRAGELSAILGPSG 43
KSV+G F GE+ I G
Sbjct: 301 KSVTGNFSRGEVIRICNLEG 320
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.0 bits (59), Expect = 0.49
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 40 GPSGAGKSSL 49
G S AGKS +
Sbjct: 10 GGSSAGKSGI 19
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.0 bits (60), Expect = 0.51
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 38 ILGPSGAGKSSLLNVISGYE--------KNEKEEEKKKKK 69
I GP +GK+SLL +++ + +
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSG 56
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 27.0 bits (59), Expect = 0.52
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
+ + L+ +LG GKSSLL
Sbjct: 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAF 51
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 27.0 bits (60), Expect = 0.52
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 38 ILGPSGAGKSSLLN 51
+G +GK+ L
Sbjct: 12 FVGLCDSGKTLLFV 25
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 26.8 bits (60), Expect = 0.59
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 37 AILGPSGAGKSSLLNVISG 55
I+G + +GK+SL N ++G
Sbjct: 183 GIVGYTNSGKTSLFNSLTG 201
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 26.8 bits (60), Expect = 0.61
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 38 ILGPSGAGKSSLLNVISGY 56
I SG GKS+LL +I
Sbjct: 76 IFAGSGVGKSTLLGMICNG 94
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 26.8 bits (60), Expect = 0.62
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 37 AILGPSGAGKSSLLN 51
I+G +GKS+L++
Sbjct: 24 GIVGNLSSGKSALVH 38
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 26.5 bits (58), Expect = 0.65
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 37 AILGPSGAGKSSLLNVIS 54
AI G GAGKS++ IS
Sbjct: 4 AIFGTVGAGKSTISAEIS 21
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 26.8 bits (60), Expect = 0.65
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 49 LLNVISGYEKNEKEEEKKKKKKEKEKKK 76
L+++ +E E +EEK +++KE ++ +
Sbjct: 249 LVDITKDFELEETDEEKAEREKEIKEYE 276
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 26.4 bits (59), Expect = 0.67
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 ILGPSGAGKSSLLN 51
ILG SG GK+SL++
Sbjct: 13 ILGDSGVGKTSLMH 26
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 26.8 bits (60), Expect = 0.67
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 49 LLNVISGYEKNEKEEEKKKKKKEKEKKK 76
L+++ +E E +EEK +++KE ++ +
Sbjct: 249 LVDITKDFELEETDEEKAEREKEIKEYE 276
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.5 bits (58), Expect = 0.69
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 37 AILGPSGAGKSSLLNVI 53
++ G SGAG S++ +
Sbjct: 9 SVTGSSGAGTSTVKHTF 25
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 26.6 bits (58), Expect = 0.75
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 37 AILGPSGAGKSSLLNVIS 54
I G G+GK++ LN
Sbjct: 24 LIEGNIGSGKTTYLNHFE 41
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 26.5 bits (59), Expect = 0.78
Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 30 FRAGELSAILGPSGAGKSSLL 50
F+ G ++ I+G +G+GKSSLL
Sbjct: 21 FKEG-INLIIGQNGSGKSSLL 40
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 26.5 bits (59), Expect = 0.79
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 38 ILGPSGAGKSSLLN 51
++G + GKS+L++
Sbjct: 25 VVGEATVGKSALIS 38
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 26.5 bits (59), Expect = 0.80
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 37 AILGPSGAGKSSLLNVISG 55
A G S AGKS+ +NV+
Sbjct: 33 AFAGRSNAGKSTAINVLCN 51
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 26.2 bits (58), Expect = 0.81
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 38 ILGPSGAGKSSLLNVISGYEKNEKEEEK 65
I+G +G+GK++LL + +K++ +
Sbjct: 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQS 34
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 26.6 bits (59), Expect = 0.87
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 38 ILGPSGAGKSSLLNVISGY 56
+ SG GKS LL +++ Y
Sbjct: 162 LFAGSGVGKSVLLGMMARY 180
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 26.1 bits (58), Expect = 0.88
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 37 AILGPSGAGKSSLLN 51
+LG + +GKSSL++
Sbjct: 11 GVLGDARSGKSSLIH 25
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 26.4 bits (58), Expect = 0.88
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 37 AILGPSGAGKSSL 49
+ G GK++L
Sbjct: 9 IVTGHPATGKTTL 21
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 26.0 bits (58), Expect = 0.91
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 37 AILGPSGAGKSSLLNVISG 55
A +G S GKSSLLN +
Sbjct: 27 AFVGRSNVGKSSLLNALFN 45
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 26.2 bits (57), Expect = 0.91
Identities = 5/12 (41%), Positives = 11/12 (91%)
Query: 38 ILGPSGAGKSSL 49
++G SG+GK+++
Sbjct: 34 VMGVSGSGKTTI 45
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 26.2 bits (58), Expect = 0.98
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 38 ILGPSGAGKSSLLNVISGY 56
+ G +G+GK++ + I +
Sbjct: 176 VCGGTGSGKTTYIKSIMEF 194
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 26.0 bits (58), Expect = 0.99
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 37 AILGPSGAGKSSLLNVISG 55
A+ G S GKSS +N +
Sbjct: 27 ALAGRSNVGKSSFINSLIN 45
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 26.1 bits (58), Expect = 1.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 37 AILGPSGAGKSSLLNVISG 55
A G S AGKSS LN ++
Sbjct: 30 AFAGRSNAGKSSALNTLTN 48
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 26.3 bits (57), Expect = 1.1
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 18 PAKTILKSVSGRFRAGELSAILGPSGAGKSSLL 50
+ +LK + ++ + G G GK+ +
Sbjct: 146 TLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 26.3 bits (57), Expect = 1.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 38 ILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEK 72
++G SG GKS+L+N + + E + +K
Sbjct: 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK 47
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 25.9 bits (56), Expect = 1.1
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 37 AILGPSGAGKSSLLNVIS 54
+I G GKS+ + +++
Sbjct: 6 SIEGNIAVGKSTFVKLLT 23
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 25.9 bits (58), Expect = 1.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 30 FRAGELSAILGPSGAGKSSLLNVISGYEK 58
+ G AI+G GKS+LLN + G K
Sbjct: 8 MKVG-YVAIVGKPNVGKSTLLNNLLG-TK 34
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 26.1 bits (57), Expect = 1.2
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEE 63
L +R G+ ++G + GKS+ +N + +E E
Sbjct: 150 LADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETEN 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 26.0 bits (58), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 37 AILG-PSGAGKSSLLNVIS 54
++G P+ AGKSSLL ++
Sbjct: 161 GLVGYPN-AGKSSLLAAMT 178
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.8 bits (56), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 38 ILGPSGAGKSSLLNVISGYEK 58
++G +GAGKS+ N I G +
Sbjct: 26 LVGRTGAGKSATGNSILGQRR 46
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 25.9 bits (57), Expect = 1.4
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLN 51
+ +L ++ + G GAGKS+ L
Sbjct: 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLE 74
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 25.6 bits (57), Expect = 1.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
I+G G GKS LL
Sbjct: 20 IIGDMGVGKSCLL 32
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.1 bits (56), Expect = 1.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 23 LKSVSGRFRAGELS-AILGPSGAGKSSLLNVISG 55
+ S + G +LG GKS+ LN + G
Sbjct: 58 ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIG 91
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 25.5 bits (57), Expect = 1.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 38 ILGPSGAGKSSLLN 51
++G GKSS++
Sbjct: 10 VVGNGAVGKSSMIQ 23
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 25.7 bits (57), Expect = 1.4
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 37 AILGPSGAGKSSLLNVIS 54
I G + +GK++L ++
Sbjct: 10 GIAGGTASGKTTLAQALA 27
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 25.6 bits (57), Expect = 1.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS+LL
Sbjct: 34 LIGDSGVGKSNLL 46
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 25.6 bits (56), Expect = 1.4
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLN 51
A+ +L + I G G GKS+ +
Sbjct: 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIE 97
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 25.6 bits (56), Expect = 1.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
+LG S GKSS++
Sbjct: 12 LLGESSVGKSSIV 24
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 25.7 bits (55), Expect = 1.5
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 37 AILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEK 74
++ G GKS L++ + Y N++ + E
Sbjct: 71 SVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLT 108
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 25.7 bits (57), Expect = 1.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 38 ILGPSGAGKSSLLNVISGY 56
+ G +G+GK++L+ +
Sbjct: 180 VAGETGSGKTTLMKALMQE 198
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 25.6 bits (57), Expect = 1.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
+LG +GK+SL
Sbjct: 11 VLGDGASGKTSLT 23
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 25.5 bits (57), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 FRAGELSAILGPSGAGKSSLLNVISG 55
G AI+G GKS+LLN + G
Sbjct: 6 SYCG-FIAIVGRPNVGKSTLLNKLLG 30
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 37 AILGPSGAGKSSLL 50
AILG GAGKS+L
Sbjct: 25 AILGRRGAGKSALT 38
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 25.5 bits (56), Expect = 1.6
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLN 51
+ ++ +V + I G G GKS+ ++
Sbjct: 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTID 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 25.5 bits (57), Expect = 1.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 7 VVVGAGGVGKSALT 20
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 25.4 bits (56), Expect = 1.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS+LL
Sbjct: 18 LIGDSGVGKSNLL 30
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 25.7 bits (56), Expect = 1.6
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 4 QTHVTMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSL 49
V M + T + R R +L ++G +G GKS L
Sbjct: 13 YASVAMAA--APTTTTTTNVSLRRQRHRKEKLLVLMGATGTGKSRL 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 25.3 bits (56), Expect = 1.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G +G GKS LL
Sbjct: 30 VIGSAGTGKSCLL 42
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 25.5 bits (55), Expect = 1.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 38 ILGPSGAGKSSLLN 51
++G SG GKS+L+N
Sbjct: 23 VVGESGLGKSTLIN 36
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics,
PSI-2, prote structure initiative; 2.40A {Agrobacterium
tumefaciens} SCOP: a.295.1.1
Length = 323
Score = 25.5 bits (55), Expect = 1.7
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 14 NEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73
PSP K + R G A+ S S+ + + Y ++ K ++ K+
Sbjct: 19 APPSPQPVSHKQAATLCRQGRTCALKSGSNESGGSVTSTYTSYRLISQDIGKSLERVSKQ 78
Query: 74 K 74
Sbjct: 79 P 79
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 25.6 bits (56), Expect = 1.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 30 FRAGELSAILGPSGAGKSSLL 50
F G + G +G GK++
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFA 47
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 25.4 bits (56), Expect = 1.7
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 37 AILGPSGAGKSSL 49
+ GP KS++
Sbjct: 5 ILEGPDCCFKSTV 17
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 25.4 bits (55), Expect = 1.7
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 33 GELSAILGPSGAGKSSLLNVI 53
++ +LG GKSS++ +
Sbjct: 30 APITLVLGLRRTGKSSIIKIG 50
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 25.6 bits (55), Expect = 1.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 33 GELSAILGPSGAGKSSLLNVI 53
++ + G +GAGKS+ +
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAF 47
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 25.6 bits (56), Expect = 1.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 37 AILGPSGAGKSSLLNVIS 54
I G + +GK++L +
Sbjct: 25 GISGVTNSGKTTLAKNLQ 42
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 25.2 bits (56), Expect = 1.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 25 VVVGAGGVGKSALT 38
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 25.6 bits (55), Expect = 1.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 33 GELSAILGPSGAGKSSLLNVI 53
++ + G +GAGKS+ +
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGF 49
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 25.2 bits (56), Expect = 1.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G +G GKS LL
Sbjct: 15 VIGNAGTGKSCLL 27
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 25.3 bits (56), Expect = 1.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS+LL
Sbjct: 10 LIGDSGVGKSNLL 22
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 25.4 bits (56), Expect = 1.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 30 FRAGELSAILGPSGAGKSSLL 50
G A+ G G GK+
Sbjct: 20 IPQGFFIALTGEPGTGKTIFS 40
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 25.6 bits (56), Expect = 1.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 37 AILGPSGAGKSSLLNVIS 54
+ G + +GKSS+ I
Sbjct: 26 GVSGGTASGKSSVCAKIV 43
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 25.3 bits (56), Expect = 1.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 37 AILGPSGAGKSSLL 50
AI G +G GKS+L+
Sbjct: 32 AIFGRAGVGKSALV 45
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 25.6 bits (56), Expect = 1.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 35 LSAILGPSGAGKSSLL 50
+ AI+G +G+GKSS+
Sbjct: 27 IVAIIGENGSGKSSIF 42
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 25.4 bits (55), Expect = 2.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 ILGPSGAGKSSLLNVISGYEK 58
++G +G GKS+ N I +
Sbjct: 27 LVGKTGTGKSAAGNSILRKQA 47
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 25.1 bits (55), Expect = 2.0
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 37 AILGPSGAGKSSLLNVIS 54
+ G + +GKS++ I
Sbjct: 29 GVSGGTASGKSTVCEKIM 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 25.3 bits (56), Expect = 2.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
LG SG GK+S+L
Sbjct: 16 ALGDSGVGKTSVL 28
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 25.4 bits (55), Expect = 2.1
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 34 ELSAILGPSGAGKSSL 49
E +A++ G +
Sbjct: 120 ECTAVVARGGTANAIR 135
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 25.4 bits (56), Expect = 2.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
LG SG GK++ L
Sbjct: 30 ALGDSGVGKTTFL 42
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 25.2 bits (56), Expect = 2.2
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 22 VVVGDGGVGKSALT 35
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 25.3 bits (55), Expect = 2.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 38 ILGPSGAGKSSL 49
I GP+G GKS+
Sbjct: 7 ITGPAGVGKSTT 18
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 25.2 bits (56), Expect = 2.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
+LG S GKSSL+
Sbjct: 11 LLGESAVGKSSLV 23
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 25.2 bits (54), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 37 AILGPSGAGKSSLLNVIS 54
+I G AGKS+ +N++
Sbjct: 28 SIEGNIAAGKSTFVNILK 45
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 25.0 bits (54), Expect = 2.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 37 AILGPSGAGKSSL 49
I G + GKS L
Sbjct: 20 LITGEANIGKSEL 32
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 25.1 bits (54), Expect = 2.3
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 ILGPSGAGKSSLLN-VISGYEKNEKEEEKKKK 68
LG +G GK+ + + + E+ +KE+E+ K
Sbjct: 50 FLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKD 81
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 24.9 bits (55), Expect = 2.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
I+G +G GKS LL
Sbjct: 26 IIGDTGVGKSCLL 38
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 25.0 bits (55), Expect = 2.4
Identities = 2/32 (6%), Positives = 8/32 (25%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELSAILGP 41
V + + ++ + + P
Sbjct: 50 VVLLSGSHANEFFFRAGDDDLDQAKAYPFMTP 81
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 24.8 bits (55), Expect = 2.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
+LG GK+SL+
Sbjct: 11 LLGEGCVGKTSLV 23
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 24.8 bits (55), Expect = 2.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
+LG GAGKSSL+
Sbjct: 17 LLGDVGAGKSSLV 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 24.8 bits (55), Expect = 2.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 38 ILGPSGAGKSSLL 50
LG GK+SL+
Sbjct: 19 FLGEQSVGKTSLI 31
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 24.9 bits (55), Expect = 2.5
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 38 ILGPSGAGKSSLL 50
++G S GK+ L
Sbjct: 25 VIGDSNVGKTCLT 37
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 24.9 bits (55), Expect = 2.5
Identities = 3/13 (23%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
++G + GK+ ++
Sbjct: 34 LVGDASVGKTCVV 46
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 25.1 bits (56), Expect = 2.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 30 FRAGELSAILGPSGAGKSSLLNVISGYEK 58
+G AI+G GKS+LLN + G K
Sbjct: 5 TYSG-FVAIVGKPNVGKSTLLNNLLG-VK 31
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 24.9 bits (55), Expect = 2.5
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G +G GK+ L+
Sbjct: 31 LIGNAGVGKTCLV 43
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 24.8 bits (55), Expect = 2.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 13 VVVGGGGVGKSALT 26
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 25.0 bits (55), Expect = 2.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS LL
Sbjct: 13 LIGNSGVGKSCLL 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 24.8 bits (55), Expect = 2.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
+LG +G GKSS++
Sbjct: 11 LLGDTGVGKSSIM 23
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 24.9 bits (55), Expect = 2.6
Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 3/19 (15%)
Query: 35 LSAILGPSGAGKSSLLNVI 53
++AI+GP+G+GKS N+I
Sbjct: 26 VTAIVGPNGSGKS---NII 41
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 24.9 bits (55), Expect = 2.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GK++LL
Sbjct: 30 LIGESGVGKTNLL 42
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A
{Homo sapiens} PDB: 2xsz_A*
Length = 456
Score = 24.9 bits (54), Expect = 2.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 19 AKTILKSVSGRFRAGELSAILGPSGAGKSSLLNVISG 55
I++ + + AG + GP G GK++L I+
Sbjct: 49 CGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 25.0 bits (55), Expect = 2.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 38 ILGPSGAGKSSLL 50
LG GK+SL+
Sbjct: 21 FLGEQSVGKTSLI 33
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A;
dynamin-like protein 1A, GTPase, membrane fission,
motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB:
3t35_A*
Length = 360
Score = 24.8 bits (54), Expect = 2.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 37 AILGPSGAGKSSLLNVISG 55
A++G +GKSS+L I G
Sbjct: 38 AVVGGQSSGKSSVLESIVG 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 24.8 bits (55), Expect = 2.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 37 AILGPSGAGKSSLL 50
A+ G G GKSSL+
Sbjct: 7 AVFGAGGVGKSSLV 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 24.8 bits (55), Expect = 2.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
AILG GKSSL
Sbjct: 10 AILGYRSVGKSSLT 23
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 24.8 bits (54), Expect = 2.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 38 ILGPSGAGKSSLLN 51
+ GP GAGKS+ +
Sbjct: 79 LSGPPGAGKSTFIE 92
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 24.8 bits (54), Expect = 3.0
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
+LG + GKSS++
Sbjct: 8 LLGEAAVGKSSIV 20
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 25.0 bits (54), Expect = 3.0
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 58 KNEKEEEKKKKKKEKEKKK 76
+ +EEKK K++++ +
Sbjct: 119 LSRTKEEKKAIKEKQDAEA 137
Score = 23.8 bits (51), Expect = 8.4
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 53 ISGYEKNEKEEEKKKKKKEKEKKK 76
I + ++E++ + K+EK+ K
Sbjct: 107 IYQWHLVQREKKLSRTKEEKKAIK 130
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 24.8 bits (55), Expect = 3.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
I+G SG GKSSLL
Sbjct: 14 IIGDSGVGKSSLL 26
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 24.5 bits (54), Expect = 3.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
I+G SG GKSSLL
Sbjct: 20 IIGESGVGKSSLL 32
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 24.8 bits (55), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 24 KSVSGRFRAGELSAILGPSGAGKSSLLNVI 53
K V F G +AI+G +G+GKS N+
Sbjct: 18 KKVVIPFSKG-FTAIVGANGSGKS---NIG 43
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 24.6 bits (53), Expect = 3.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 37 AILGPSGAGKSSL 49
I G SG GKS
Sbjct: 38 LITGDSGVGKSET 50
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis,
nucleotide-B transferase; HET: MSE; 2.01A
{Staphylococcus aureus}
Length = 219
Score = 24.6 bits (54), Expect = 3.2
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 30 FRAGELSAILGPSGAGKSS-LLNVISGYEKNEKEEEKK 66
+ +G + I G +GKS L+ + + ++K
Sbjct: 25 YHSGWIECITGSMFSGKSEELIRRL----RRGIYAKQK 58
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 24.5 bits (54), Expect = 3.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GK+ LL
Sbjct: 15 LVGDSGVGKTCLL 27
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 24.5 bits (54), Expect = 3.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 38 ILGPSGAGKSSLL 50
+ G + GKSS L
Sbjct: 33 LAGDAAVGKSSFL 45
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 24.4 bits (54), Expect = 3.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 8 IMVGSGGVGKSALT 21
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 24.5 bits (54), Expect = 3.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
+ G G GKSSL+
Sbjct: 12 VVFGAGGVGKSSLV 25
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 24.6 bits (54), Expect = 3.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 29 RFRAGELSAILGPSGAGKSSLLNVISGY 56
R E A P+G GK+S +S +
Sbjct: 67 RILRKESFAATAPTGVGKTSFGLAMSLF 94
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 24.5 bits (54), Expect = 3.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GK+ +L
Sbjct: 13 LIGDSGVGKTCVL 25
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 24.5 bits (54), Expect = 3.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS LL
Sbjct: 38 LIGDSGVGKSCLL 50
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 24.6 bits (54), Expect = 3.7
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 38 ILGPSGAGKSSLLN 51
++G G GK++ +
Sbjct: 20 LVGDGGTGKTTFVK 33
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 24.5 bits (54), Expect = 3.7
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 38 ILG-PSGAGKSSLLNVIS 54
++G PS GKS+LL+V+S
Sbjct: 163 LVGFPS-VGKSTLLSVVS 179
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 24.4 bits (54), Expect = 3.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 30 FRAGEL-SAIL-GPSGAGKSSLLNVISGY 56
AG L S IL GP G GK++L VI+ Y
Sbjct: 45 IEAGHLHSMILWGPPGTGKTTLAEVIARY 73
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 24.5 bits (53), Expect = 3.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 58 KNEKEEEKKKKKKEKEKKK 76
K +EKK+ + E+EK +
Sbjct: 109 KQLTSQEKKQIRLEREKFE 127
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 24.5 bits (54), Expect = 3.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
++G S GK+S L
Sbjct: 27 LIGNSSVGKTSFL 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 24.5 bits (54), Expect = 3.9
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
+LG +G GKSS++
Sbjct: 28 LLGDTGVGKSSIV 40
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 24.3 bits (53), Expect = 4.1
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 30 FRAGELSAILGPSGAGKSSLL 50
+ + G G GK+
Sbjct: 20 IPERNVVLLSGGPGTGKTIFS 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 24.5 bits (54), Expect = 4.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 8 VVVGADGVGKSALT 21
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 24.5 bits (54), Expect = 4.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 37 AILGPSGAGKSSLL 50
++G SG GKS+L
Sbjct: 27 MLVGESGVGKSTLA 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 24.4 bits (54), Expect = 4.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
+LG G GKS+L
Sbjct: 7 VVLGSGGVGKSALT 20
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 24.2 bits (53), Expect = 4.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
I+G S GK+S L
Sbjct: 13 IIGNSSVGKTSFL 25
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 24.4 bits (54), Expect = 4.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
+LG G GK+SL
Sbjct: 8 VLLGDPGVGKTSLA 21
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 24.5 bits (54), Expect = 4.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 37 AILGPSGAGKSSLL 50
ILG GK+SL
Sbjct: 28 VILGYRCVGKTSLA 41
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 24.4 bits (54), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
+LG G GKS+L
Sbjct: 6 LLLGAPGVGKSALA 19
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 24.4 bits (54), Expect = 4.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS+L
Sbjct: 7 LVGESGVGKSTLA 19
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 24.4 bits (54), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
+LG G GKS+L
Sbjct: 7 VVLGSGGVGKSALT 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 24.1 bits (53), Expect = 4.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS LL
Sbjct: 21 LIGDSGVGKSCLL 33
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 24.1 bits (53), Expect = 4.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 22 IMVGSGGVGKSALT 35
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 24.3 bits (52), Expect = 4.5
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 52 VISGYEKNEKEEEKKK 67
++SG E ++ +++ KK
Sbjct: 147 IVSGLELSDTKQKGKK 162
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 24.1 bits (53), Expect = 4.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
I+G S GK+S L
Sbjct: 28 IIGNSSVGKTSFL 40
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 24.2 bits (52), Expect = 4.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 50 LNVISGYEKNEKEEEKKKKKKEKEK 74
+ IS Y NE+E+ KKK K
Sbjct: 442 KSQISFYFNNEEEDNNKKKSSPATK 466
Score = 24.2 bits (52), Expect = 5.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 GYEKNEKEEEKKKKKKEKEKK 75
+ N +EE+ KKK K
Sbjct: 446 SFYFNNEEEDNNKKKSSPATK 466
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 24.1 bits (53), Expect = 4.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 18 IMVGSGGVGKSALT 31
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 24.1 bits (53), Expect = 5.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
I+G G GK+SL+
Sbjct: 31 IIGSRGVGKTSLM 43
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 24.0 bits (53), Expect = 5.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS LL
Sbjct: 8 LIGDSGVGKSCLL 20
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 24.1 bits (52), Expect = 5.1
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 23 LKSVSGRFRAGELSAILGPSGAGKSSLLNVISGYEKNEKE 62
+ R+R G ++G + GKS+ +N I +
Sbjct: 152 VMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGN 191
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 24.0 bits (52), Expect = 5.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 37 AILGPSGAGKSSLLNVIS 54
+ G GKSS +N++S
Sbjct: 33 ILSGAPNVGKSSFMNIVS 50
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 24.1 bits (52), Expect = 5.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 37 AILGPSGAGKSSLLN 51
+ G +G GKS LL
Sbjct: 57 LVNGATGTGKSVLLR 71
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 23.8 bits (52), Expect = 5.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 37 AILGPSGAGKSSLLNVISG 55
G S GKS+L+ ++G
Sbjct: 5 IFAGRSNVGKSTLIYRLTG 23
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 24.3 bits (53), Expect = 5.6
Identities = 8/19 (42%), Positives = 15/19 (78%), Gaps = 3/19 (15%)
Query: 35 LSAILGPSGAGKSSLLNVI 53
++I+GP+G+GKS N++
Sbjct: 28 FTSIIGPNGSGKS---NMM 43
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 24.0 bits (51), Expect = 5.7
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 37 AILGPSGAGKSSLLN 51
+ G GK+S +
Sbjct: 69 LVAGQYSTGKTSFIQ 83
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 24.2 bits (53), Expect = 5.7
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 29 RFRAGELSA------------ILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKE 73
R+R +L ++GP+G GK+ + ++ + + K E
Sbjct: 34 RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 90
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 23.8 bits (52), Expect = 5.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
++G SG GKS LL
Sbjct: 25 LIGDSGVGKSCLL 37
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 24.1 bits (51), Expect = 6.3
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 19 AKTILKSVSGRFRAGELSAIL--GPSGAGKSSLLNVI 53
A+ + G+ + + AIL G SGAGK+++ +
Sbjct: 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIK 52
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 23.9 bits (51), Expect = 6.6
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 38 ILGPSGAGKSSLL 50
++G SG+GK+ L+
Sbjct: 6 LVGRSGSGKTKLI 18
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 23.9 bits (51), Expect = 6.9
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 29 RFRAGELSAILGPSGAGKSSLLNVISGYEKNEKEEEKKKKKKEKEKKK 76
+R +L + S ++ YE E + +KKE+E ++
Sbjct: 297 LYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQ 344
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 23.8 bits (51), Expect = 7.2
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 8 TMVTFFNEPSPAKTILKSVSGRFRAGELSAILGPSGAGKSSL 49
+ +T F E A+T G I G SG GKS
Sbjct: 119 SRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSET 160
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 23.7 bits (52), Expect = 7.5
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 10 VTFFNEPSPAKTILKSVSGRFRAGELS 36
+T F P S A +
Sbjct: 42 ITVFCIKFPGMPFADSYIKSVLASQPQ 68
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 23.7 bits (51), Expect = 7.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 38 ILGPSGAGKSSLLNV 52
++GPSG GK++ V
Sbjct: 911 MVGPSGGGKTTSWEV 925
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 23.5 bits (50), Expect = 7.7
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 37 AILGPSGAGKSSLLNVI 53
+I+G S +GK++L+ +
Sbjct: 6 SIVGTSDSGKTTLITRM 22
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 23.4 bits (51), Expect = 8.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 37 AILGPSGAGKSSLL 50
++G G GKS+L
Sbjct: 41 VLIGEQGVGKSTLA 54
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 23.4 bits (51), Expect = 8.2
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 38 ILGPSGAGKSSLL 50
+G G+GK+ L+
Sbjct: 43 FMGAIGSGKTLLI 55
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 23.3 bits (51), Expect = 8.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 38 ILGPSGAGKSSLL 50
I+G G+GK+ L+
Sbjct: 35 IMGAIGSGKTLLI 47
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 23.4 bits (51), Expect = 8.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 38 ILGPSGAGKSSLLN 51
++G G GK++ +N
Sbjct: 16 LIGDGGVGKTTYIN 29
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 23.5 bits (50), Expect = 8.3
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 38 ILGPSGAGKSSLLN-VISGYEKNEKE 62
I G +G GK++++ V+S K
Sbjct: 50 IYGLTGTGKTAVVKFVLSKLHKKFLG 75
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 23.6 bits (51), Expect = 8.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 46 KSSLLNVISGYEKNEKEEEKKKKKKEKEKKK 76
K + + E+ +EEE ++K + EK
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Score = 23.6 bits (51), Expect = 9.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 46 KSSLLNVISGYEKNEKEEEKKKKKKEKEKKK 76
K L ++ E +EEE++ ++ + EKKK
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKK 952
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 23.4 bits (50), Expect = 8.6
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 56 YEKNEKEEEKKKKKKEKEKK 75
Y + EK+++++ K + K
Sbjct: 85 YWEFEKDKDREHDKLVELCK 104
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA,
nucleotide-binding, RNA-binding; 2.37A {Thermotoga
maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Length = 441
Score = 23.5 bits (51), Expect = 8.7
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 52 VISGYEKNEKEEEKKKKKKEKEKKK 76
+ G ++E+E ++ + + K
Sbjct: 405 KLDGDTRDEEEILEEVLASLETEGK 429
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 23.6 bits (50), Expect = 9.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 58 KNEKEEEKKKKKKEKEKKK 76
K +EEK K K+E EK
Sbjct: 143 KQMSKEEKLKIKEENEKLL 161
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 23.4 bits (50), Expect = 9.2
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 57 EKNEKEEEKKKKKKE 71
E+ E +K+K+++E
Sbjct: 508 EEKRIEAQKRKERQE 522
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium,
protein STRU initiative, PSI, structural genomics, DNA
synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum}
SCOP: c.37.1.24 g.39.1.14
Length = 191
Score = 23.3 bits (51), Expect = 9.9
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 30 FRAGELSAILGPSGAGKSS-LLNVISGYEKNEKEEEKK 66
G + I+GP +GKS L+ I + K ++K
Sbjct: 5 KDHGWVEVIVGPMYSGKSEELIRRI----RRAKIAKQK 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.123 0.318
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 993,092
Number of extensions: 47088
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 351
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.9 bits)