BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12089
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4DL0|E Chain E, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4EFA|E Chain E, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase - Second
Conformation
Length = 233
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 120/220 (54%), Gaps = 2/220 (0%)
Query: 246 LMALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQHQRLKIMEYYDR 305
+ AL+ V ++ M AFI + + IEK +V+++ I +
Sbjct: 5 ITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKS 64
Query: 306 KEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKL 365
K K+ L ++I S + N+ RLK L RE + + +E +++L + NRD+Y +++ L
Sbjct: 65 KLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSL 124
Query: 366 IIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEV--NLKLDNDQFLPVDT 423
I++ LL+LLEP ++++ E D D++ ++ ++ + Y + A + + + ND
Sbjct: 125 IVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDLV 184
Query: 424 TGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463
+GG+ + KI+I+NTLE RL+L++++ +P IR+ ++G
Sbjct: 185 SGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYG 224
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 116/212 (54%), Gaps = 2/212 (0%)
Query: 32 VQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQHQRLKIMEYYDRKEKQVELQ 91
V ++ M AFI + + IEK +V+++ I + K K+ L
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 92 KKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQL 151
++I S + N+ RLK L RE + + +E +++L + NRD+Y +++ LI++ LL+L
Sbjct: 73 QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKL 132
Query: 152 LEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEV--NLKLDNDQFLPVDTTGGIELLA 209
LEP ++++ E D D++ ++ ++ + Y + A + + + ND +GG+ +
Sbjct: 133 LEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDLVSGGVVVSN 192
Query: 210 QRGKIKISNTLEARLELIAQQIIPDIRVAIFG 241
KI+I+NTLE RL+L++++ +P IR+ ++G
Sbjct: 193 ASDKIEINNTLEERLKLLSEEALPAIRLELYG 224
>pdb|2DM9|A Chain A, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3
pdb|2DM9|B Chain B, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3
Length = 198
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 83 RKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEK 142
R + Q EL+K+ +N + R K L ++E+ + +VL+E ++RL T + D+Y + ++
Sbjct: 51 RAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE--TMSEDEYFESVKA 108
Query: 143 LIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTT 202
L+ + + +L E V + S E ++ + + + DV+ ++L VDT
Sbjct: 109 LLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELGDVS-----IELGE----TVDTM 159
Query: 203 GGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 241
GG+ + + G+I+I NT EAR+E +I I +FG
Sbjct: 160 GGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 305 RKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEK 364
R + Q EL+K+ +N + R K L ++E+ + +VL+E ++RL T + D+Y + ++
Sbjct: 51 RAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE--TMSEDEYFESVKA 108
Query: 365 LIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTT 424
L+ + + +L E V + S E ++ + + + DV+ ++L VDT
Sbjct: 109 LLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELGDVS-----IELGE----TVDTM 159
Query: 425 GGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463
GG+ + + G+I+I NT EAR+E +I I +FG
Sbjct: 160 GGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198
>pdb|4DT0|A Chain A, The Structure Of The Peripheral Stalk Subunit E From
Pyrococcus Horikoshii
Length = 208
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 83 RKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEK 142
R + Q EL+K+ +N + R K L ++E+ + +VL+E ++RL T + D+Y + ++
Sbjct: 61 RAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE--TMSEDEYFESVKA 118
Query: 143 LIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTT 202
L+ + + +L E V + S E ++ + + + DV+ ++L VDT
Sbjct: 119 LLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELGDVS-----IELGE----TVDTM 169
Query: 203 GGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 241
GG+ + + G+I+I NT EAR+E +I I +FG
Sbjct: 170 GGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 208
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 305 RKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEK 364
R + Q EL+K+ +N + R K L ++E+ + +VL+E ++RL T + D+Y + ++
Sbjct: 61 RAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE--TMSEDEYFESVKA 118
Query: 365 LIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTT 424
L+ + + +L E V + S E ++ + + + DV+ ++L VDT
Sbjct: 119 LLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELGDVS-----IELGE----TVDTM 169
Query: 425 GGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463
GG+ + + G+I+I NT EAR+E +I I +FG
Sbjct: 170 GGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 208
>pdb|2DMA|A Chain A, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3
(Form Ii)
Length = 198
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 83 RKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEK 142
R + Q EL+K+ +N + R K L ++E+ + +VL+E ++RL T + D+Y + ++
Sbjct: 51 RAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE--TXSEDEYFESVKA 108
Query: 143 LIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTT 202
L+ + + +L E V + S E ++ + + + DV+ ++L VDT
Sbjct: 109 LLKEAIKELNEKKVRVXSNEKTLGLIASRIEEIKSELGDVS-----IELGE----TVDTX 159
Query: 203 GGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 241
GG+ + + G+I+I NT EAR E +I I +FG
Sbjct: 160 GGVIVETEDGRIRIDNTFEARXERFEGEIRSTIAKVLFG 198
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 305 RKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEK 364
R + Q EL+K+ +N + R K L ++E+ + +VL+E ++RL T + D+Y + ++
Sbjct: 51 RAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRRLE--TXSEDEYFESVKA 108
Query: 365 LIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTT 424
L+ + + +L E V + S E ++ + + + DV+ ++L VDT
Sbjct: 109 LLKEAIKELNEKKVRVXSNEKTLGLIASRIEEIKSELGDVS-----IELGE----TVDTX 159
Query: 425 GGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463
GG+ + + G+I+I NT EAR E +I I +FG
Sbjct: 160 GGVIVETEDGRIRIDNTFEARXERFEGEIRSTIAKVLFG 198
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 186 EVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNT-LEARLELIAQQ 230
+VN+K F P T G++ L G + SN L+A L ++ QQ
Sbjct: 363 DVNVKKTGKGFTPTPTRKGLDTLYMSGSAEFSNGELQAMLPVLKQQ 408
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 408 EVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNT-LEARLELIAQQ 452
+VN+K F P T G++ L G + SN L+A L ++ QQ
Sbjct: 363 DVNVKKTGKGFTPTPTRKGLDTLYMSGSAEFSNGELQAMLPVLKQQ 408
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,050,817
Number of Sequences: 62578
Number of extensions: 410801
Number of successful extensions: 1258
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 46
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)