Query psy12089
Match_columns 467
No_of_seqs 277 out of 848
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:24:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664|consensus 100.0 1.1E-59 2.5E-64 427.7 28.1 220 27-246 1-220 (220)
2 KOG1664|consensus 100.0 3.8E-54 8.2E-59 391.7 27.9 219 249-467 1-219 (220)
3 PRK03963 V-type ATP synthase s 100.0 4.9E-32 1.1E-36 256.6 25.6 196 18-241 3-198 (198)
4 PRK03963 V-type ATP synthase s 100.0 9.5E-31 2.1E-35 247.8 27.8 194 258-463 4-198 (198)
5 PF01991 vATP-synt_E: ATP synt 100.0 6.7E-31 1.4E-35 248.0 18.2 197 42-240 1-198 (198)
6 PRK02292 V-type ATP synthase s 100.0 2.2E-29 4.8E-34 236.6 22.9 188 16-242 1-188 (188)
7 PF01991 vATP-synt_E: ATP synt 100.0 5.3E-30 1.1E-34 241.9 18.7 198 264-462 1-198 (198)
8 PRK01194 V-type ATP synthase s 100.0 1.1E-28 2.4E-33 230.7 21.2 182 16-242 1-182 (185)
9 PRK02292 V-type ATP synthase s 100.0 4.5E-28 9.8E-33 227.7 24.7 185 258-464 3-188 (188)
10 COG1390 NtpE Archaeal/vacuolar 100.0 2E-27 4.2E-32 222.8 25.6 191 36-242 4-194 (194)
11 PRK01194 V-type ATP synthase s 100.0 1E-27 2.2E-32 224.3 23.5 178 258-463 3-181 (185)
12 COG1390 NtpE Archaeal/vacuolar 100.0 9.3E-27 2E-31 218.3 25.4 192 257-464 3-194 (194)
13 PRK01558 V-type ATP synthase s 99.9 5.1E-21 1.1E-25 181.1 26.6 194 251-461 2-195 (198)
14 PRK01558 V-type ATP synthase s 99.9 1.9E-19 4.2E-24 170.4 26.8 188 18-239 8-195 (198)
15 PRK01005 V-type ATP synthase s 99.8 1.1E-17 2.5E-22 158.5 24.8 188 251-464 7-207 (207)
16 PRK01005 V-type ATP synthase s 99.8 4.8E-17 1E-21 154.3 25.1 185 36-242 14-207 (207)
17 TIGR03825 FliH_bacil flagellar 99.2 9.1E-09 2E-13 101.4 25.4 186 261-459 41-250 (255)
18 TIGR03825 FliH_bacil flagellar 99.2 1.1E-08 2.4E-13 100.7 25.3 114 111-236 135-249 (255)
19 PRK06669 fliH flagellar assemb 99.1 4.5E-08 9.7E-13 97.8 26.4 110 110-233 164-276 (281)
20 PRK06937 type III secretion sy 99.1 3.7E-08 8E-13 93.9 22.3 166 42-233 34-201 (204)
21 PRK06937 type III secretion sy 99.0 8.5E-08 1.8E-12 91.4 23.8 184 243-456 15-202 (204)
22 PRK09098 type III secretion sy 99.0 2E-07 4.4E-12 90.5 26.2 182 16-234 34-222 (233)
23 PRK06669 fliH flagellar assemb 99.0 2.4E-07 5.1E-12 92.6 25.6 110 332-455 164-276 (281)
24 PRK09098 type III secretion sy 99.0 4.5E-07 9.7E-12 88.1 26.0 109 332-457 111-223 (233)
25 PRK06328 type III secretion sy 98.9 5.3E-07 1.2E-11 87.1 24.7 170 42-235 33-204 (223)
26 PRK06328 type III secretion sy 98.8 2.2E-06 4.8E-11 82.8 24.9 191 243-459 14-206 (223)
27 TIGR03321 alt_F1F0_F0_B altern 98.7 4E-06 8.8E-11 82.2 22.7 168 263-453 63-245 (246)
28 TIGR02499 HrpE_YscL_not type I 98.7 1.8E-06 4E-11 79.1 18.8 150 261-438 14-165 (166)
29 TIGR02499 HrpE_YscL_not type I 98.7 2.8E-06 6E-11 77.9 19.3 148 41-216 16-165 (166)
30 TIGR03321 alt_F1F0_F0_B altern 98.7 1.4E-05 3E-10 78.5 24.9 169 41-231 63-245 (246)
31 COG1317 FliH Flagellar biosynt 98.6 2.3E-05 4.9E-10 76.3 24.7 187 26-235 36-228 (234)
32 COG1317 FliH Flagellar biosynt 98.6 4.7E-05 1E-09 74.1 25.1 193 244-457 32-228 (234)
33 PF06188 HrpE: HrpE/YscL/FliH 98.4 5.3E-05 1.1E-09 71.5 19.2 153 261-440 31-183 (191)
34 PF06188 HrpE: HrpE/YscL/FliH 98.3 0.00016 3.4E-09 68.3 21.3 151 41-218 33-183 (191)
35 PRK13386 fliH flagellar assemb 98.2 0.00018 4E-09 70.1 19.1 110 111-242 121-232 (236)
36 PRK13386 fliH flagellar assemb 98.1 0.00025 5.5E-09 69.2 19.1 108 333-463 121-231 (236)
37 PRK05687 fliH flagellar assemb 98.1 0.00038 8.3E-09 68.2 19.5 107 333-455 134-242 (246)
38 PRK05687 fliH flagellar assemb 98.1 0.00038 8.3E-09 68.2 19.1 107 111-233 134-242 (246)
39 PF02108 FliH: Flagellar assem 98.0 0.00039 8.3E-09 60.6 15.8 100 110-226 25-127 (128)
40 PF02108 FliH: Flagellar assem 98.0 0.00044 9.6E-09 60.2 15.7 101 331-448 24-127 (128)
41 PRK14474 F0F1 ATP synthase sub 97.8 0.0061 1.3E-07 60.0 22.2 164 42-231 64-245 (250)
42 PRK14474 F0F1 ATP synthase sub 97.8 0.0089 1.9E-07 58.9 22.7 165 263-453 63-245 (250)
43 PRK08475 F0F1 ATP synthase sub 97.7 0.00067 1.4E-08 62.7 13.0 91 258-364 75-165 (167)
44 PRK08475 F0F1 ATP synthase sub 97.7 0.0019 4.2E-08 59.6 15.6 91 36-142 75-165 (167)
45 PF06635 NolV: Nodulation prot 97.6 0.013 2.8E-07 55.4 19.2 164 263-455 33-200 (207)
46 PRK06032 fliH flagellar assemb 97.5 0.041 8.9E-07 52.3 21.8 83 139-230 112-195 (199)
47 PF06635 NolV: Nodulation prot 97.4 0.027 5.9E-07 53.3 19.6 164 42-233 34-200 (207)
48 PRK13428 F0F1 ATP synthase sub 97.4 0.26 5.7E-06 52.6 40.3 104 40-155 58-161 (445)
49 PRK06032 fliH flagellar assemb 97.4 0.055 1.2E-06 51.4 21.8 108 333-452 86-195 (199)
50 PRK13436 F0F1 ATP synthase sub 96.6 0.026 5.7E-07 52.7 11.5 51 398-454 128-178 (179)
51 PRK13436 F0F1 ATP synthase sub 96.2 0.064 1.4E-06 50.1 11.8 57 170-232 122-178 (179)
52 PRK13434 F0F1 ATP synthase sub 96.0 0.13 2.8E-06 48.2 12.6 54 395-454 121-174 (184)
53 PRK13430 F0F1 ATP synthase sub 96.0 0.11 2.4E-06 51.7 12.6 50 398-453 220-269 (271)
54 PRK13430 F0F1 ATP synthase sub 95.9 0.12 2.6E-06 51.5 12.6 86 136-231 183-269 (271)
55 PRK13434 F0F1 ATP synthase sub 95.5 0.24 5.2E-06 46.4 12.2 58 169-232 117-174 (184)
56 PRK14472 F0F1 ATP synthase sub 95.1 1.7 3.6E-05 40.3 16.4 66 229-296 29-109 (175)
57 COG0712 AtpH F0F1-type ATP syn 94.9 0.26 5.6E-06 46.1 10.3 112 331-453 57-177 (178)
58 PRK13441 F0F1 ATP synthase sub 94.8 0.35 7.6E-06 45.1 11.2 49 400-454 129-177 (180)
59 PRK08404 V-type ATP synthase s 94.8 1.2 2.6E-05 37.9 13.3 71 43-113 18-88 (103)
60 PRK13455 F0F1 ATP synthase sub 94.4 2.7 5.9E-05 39.3 16.0 78 212-291 21-113 (184)
61 COG0712 AtpH F0F1-type ATP syn 94.2 0.42 9.2E-06 44.6 10.1 59 167-231 119-177 (178)
62 PRK13460 F0F1 ATP synthase sub 94.1 2.9 6.2E-05 38.7 15.4 127 228-368 26-167 (173)
63 CHL00019 atpF ATP synthase CF0 94.0 3.2 7E-05 38.8 15.7 124 231-368 37-175 (184)
64 PRK14471 F0F1 ATP synthase sub 93.9 3.5 7.6E-05 37.7 15.5 60 232-293 22-96 (164)
65 TIGR02926 AhaH ATP synthase ar 93.5 0.71 1.5E-05 37.6 9.1 59 19-83 7-65 (85)
66 PRK13441 F0F1 ATP synthase sub 93.5 1.3 2.7E-05 41.3 12.0 55 172-232 123-177 (180)
67 PRK07352 F0F1 ATP synthase sub 93.5 6.3 0.00014 36.4 17.0 92 42-145 78-169 (174)
68 COG2811 NtpF Archaeal/vacuolar 93.3 3.3 7.1E-05 35.4 12.8 40 42-81 32-71 (108)
69 PRK05758 F0F1 ATP synthase sub 92.7 2.3 4.9E-05 39.4 12.4 46 402-453 130-175 (177)
70 PRK08404 V-type ATP synthase s 92.5 5.9 0.00013 33.6 13.8 36 262-297 15-50 (103)
71 TIGR01145 ATP_synt_delta ATP s 92.4 2.3 4.9E-05 39.2 12.0 46 401-452 125-171 (172)
72 PRK13453 F0F1 ATP synthase sub 92.4 6 0.00013 36.6 14.7 66 230-297 30-110 (173)
73 PRK07352 F0F1 ATP synthase sub 92.1 8.4 0.00018 35.6 15.3 93 263-367 77-169 (174)
74 PRK15322 invasion protein OrgB 91.7 12 0.00027 35.4 18.7 141 40-211 14-156 (210)
75 PRK15354 type III secretion sy 91.7 13 0.00028 35.5 20.5 176 243-448 15-207 (224)
76 PRK14472 F0F1 ATP synthase sub 91.7 11 0.00024 34.8 16.6 93 41-145 76-168 (175)
77 PRK06231 F0F1 ATP synthase sub 91.3 13 0.00027 35.6 15.9 94 263-368 106-199 (205)
78 PRK13428 F0F1 ATP synthase sub 91.1 8.8 0.00019 41.1 16.2 104 262-377 58-161 (445)
79 PRK13429 F0F1 ATP synthase sub 91.1 4.6 9.9E-05 37.5 12.5 46 402-453 132-177 (181)
80 TIGR02926 AhaH ATP synthase ar 90.7 3.1 6.8E-05 33.8 9.6 56 15-72 14-69 (85)
81 PRK06231 F0F1 ATP synthase sub 90.6 16 0.00035 34.8 17.9 95 40-146 105-199 (205)
82 PRK15322 invasion protein OrgB 90.6 16 0.00035 34.7 20.5 155 262-449 14-170 (210)
83 PRK05758 F0F1 ATP synthase sub 90.5 4.8 0.0001 37.2 12.1 67 155-231 108-175 (177)
84 PRK00106 hypothetical protein; 90.5 22 0.00049 38.9 18.7 28 103-130 136-163 (535)
85 PRK13460 F0F1 ATP synthase sub 90.3 15 0.00032 33.9 18.0 93 41-145 74-166 (173)
86 CHL00019 atpF ATP synthase CF0 90.2 16 0.00034 34.1 18.5 94 41-146 82-175 (184)
87 TIGR01145 ATP_synt_delta ATP s 89.7 6.1 0.00013 36.3 12.0 49 176-230 122-171 (172)
88 PRK14475 F0F1 ATP synthase sub 89.7 11 0.00025 34.5 13.7 121 13-146 33-161 (167)
89 PRK09173 F0F1 ATP synthase sub 89.0 14 0.0003 33.6 13.6 93 42-146 61-153 (159)
90 PRK13455 F0F1 ATP synthase sub 88.6 21 0.00045 33.3 16.9 32 43-74 87-118 (184)
91 CHL00118 atpG ATP synthase CF0 88.3 12 0.00026 33.9 12.7 37 41-77 80-116 (156)
92 PRK08474 F0F1 ATP synthase sub 88.2 6.2 0.00013 36.6 10.9 53 397-459 122-174 (176)
93 PRK14473 F0F1 ATP synthase sub 88.0 21 0.00045 32.6 15.9 95 262-368 65-159 (164)
94 PRK05759 F0F1 ATP synthase sub 88.0 20 0.00043 32.2 15.2 93 262-366 61-153 (156)
95 PRK13461 F0F1 ATP synthase sub 88.0 20 0.00044 32.4 15.3 93 263-367 63-155 (159)
96 CHL00119 atpD ATP synthase CF1 87.8 5.1 0.00011 37.4 10.2 50 399-454 130-180 (184)
97 PRK05759 F0F1 ATP synthase sub 87.5 21 0.00046 32.1 17.7 94 39-144 60-153 (156)
98 PF00213 OSCP: ATP synthase de 86.8 0.085 1.8E-06 48.6 -2.4 82 358-452 85-171 (172)
99 PRK13429 F0F1 ATP synthase sub 86.6 13 0.00029 34.3 12.3 86 136-231 91-177 (181)
100 PRK08476 F0F1 ATP synthase sub 86.3 19 0.00041 32.1 12.5 42 42-83 66-107 (141)
101 PRK15354 type III secretion sy 86.1 32 0.0007 32.8 20.3 71 137-225 136-206 (224)
102 KOG1662|consensus 86.1 3.5 7.7E-05 38.9 7.8 49 399-451 156-204 (210)
103 TIGR01144 ATP_synt_b ATP synth 86.0 24 0.00053 31.3 16.1 38 40-77 52-89 (147)
104 PRK14473 F0F1 ATP synthase sub 85.4 29 0.00062 31.6 18.4 94 40-145 65-158 (164)
105 PRK08474 F0F1 ATP synthase sub 85.3 17 0.00037 33.7 12.2 57 170-236 117-173 (176)
106 PRK12704 phosphodiesterase; Pr 85.3 63 0.0014 35.4 21.5 25 167-191 189-213 (520)
107 TIGR03319 YmdA_YtgF conserved 85.2 62 0.0013 35.4 18.1 25 167-191 183-207 (514)
108 PRK13461 F0F1 ATP synthase sub 85.1 29 0.00063 31.4 17.8 93 41-145 63-155 (159)
109 PRK06568 F0F1 ATP synthase sub 84.7 13 0.00029 33.9 10.8 33 41-73 62-94 (154)
110 CHL00118 atpG ATP synthase CF0 84.1 32 0.00069 31.2 13.2 33 263-295 80-112 (156)
111 PRK07353 F0F1 ATP synthase sub 83.7 30 0.00065 30.4 14.0 36 40-75 62-97 (140)
112 PRK14471 F0F1 ATP synthase sub 83.3 36 0.00077 31.0 18.4 36 39-74 64-99 (164)
113 PF00213 OSCP: ATP synthase de 83.0 0.075 1.6E-06 48.9 -4.7 86 136-230 85-171 (172)
114 PRK12704 phosphodiesterase; Pr 83.0 58 0.0013 35.6 16.8 28 325-352 121-148 (520)
115 PRK14475 F0F1 ATP synthase sub 82.9 38 0.00082 31.0 16.7 10 165-174 152-161 (167)
116 PRK00106 hypothetical protein; 82.7 71 0.0015 35.1 17.1 21 43-63 47-67 (535)
117 CHL00119 atpD ATP synthase CF1 82.1 23 0.00049 33.0 11.7 54 173-232 126-180 (184)
118 TIGR01144 ATP_synt_b ATP synth 81.9 37 0.0008 30.2 14.0 35 262-296 52-86 (147)
119 TIGR03319 YmdA_YtgF conserved 81.6 66 0.0014 35.2 16.6 25 390-414 184-208 (514)
120 PRK09174 F0F1 ATP synthase sub 80.8 48 0.001 31.6 13.5 24 263-286 111-134 (204)
121 PRK13454 F0F1 ATP synthase sub 80.3 51 0.0011 30.7 13.9 35 40-74 88-122 (181)
122 KOG1662|consensus 79.5 10 0.00022 35.8 8.1 54 172-229 151-204 (210)
123 PF00430 ATP-synt_B: ATP synth 79.3 21 0.00046 30.8 9.9 38 40-77 56-93 (132)
124 COG0711 AtpF F0F1-type ATP syn 79.1 51 0.0011 30.1 14.4 30 262-291 63-92 (161)
125 PRK07353 F0F1 ATP synthase sub 77.9 48 0.001 29.1 13.3 76 215-293 3-93 (140)
126 PF12072 DUF3552: Domain of un 77.8 65 0.0014 30.5 16.7 23 329-351 121-143 (201)
127 PF00430 ATP-synt_B: ATP synth 76.1 23 0.00049 30.6 9.1 31 263-293 57-87 (132)
128 PRK08476 F0F1 ATP synthase sub 75.5 50 0.0011 29.5 11.3 12 231-242 20-31 (141)
129 PRK13453 F0F1 ATP synthase sub 72.4 80 0.0017 29.1 16.6 39 41-79 76-114 (173)
130 PRK12705 hypothetical protein; 72.4 1.5E+02 0.0033 32.3 19.2 47 24-72 36-82 (508)
131 PRK09174 F0F1 ATP synthase sub 72.3 92 0.002 29.7 16.0 33 41-73 111-143 (204)
132 PRK06568 F0F1 ATP synthase sub 71.4 82 0.0018 28.7 16.2 20 103-122 105-124 (154)
133 PF03179 V-ATPase_G: Vacuolar 70.2 64 0.0014 27.0 12.0 24 331-354 62-85 (105)
134 PF12072 DUF3552: Domain of un 67.3 1.1E+02 0.0025 28.8 16.6 25 258-282 171-195 (201)
135 PF03179 V-ATPase_G: Vacuolar 62.5 92 0.002 26.1 12.4 44 259-306 13-56 (105)
136 COG0711 AtpF F0F1-type ATP syn 56.1 1.6E+02 0.0035 26.8 16.3 32 41-72 64-95 (161)
137 COG2811 NtpF Archaeal/vacuolar 53.9 1.4E+02 0.0031 25.6 15.3 38 262-299 30-67 (108)
138 PRK12705 hypothetical protein; 53.4 3.4E+02 0.0073 29.7 19.7 28 261-288 49-76 (508)
139 PF03938 OmpH: Outer membrane 49.6 1.6E+02 0.0034 26.2 9.6 55 105-173 101-155 (158)
140 PRK09173 F0F1 ATP synthase sub 49.1 2E+02 0.0043 25.9 18.4 27 96-122 96-122 (159)
141 PF07849 DUF1641: Protein of u 42.2 24 0.00051 24.9 2.3 21 2-22 19-39 (42)
142 PHA03065 Hypothetical protein; 39.7 5E+02 0.011 27.7 12.9 82 106-194 111-198 (438)
143 KOG4702|consensus 35.2 1.7E+02 0.0037 23.1 6.2 74 202-281 1-75 (77)
144 PF01086 Clathrin_lg_ch: Clath 34.9 65 0.0014 31.2 4.9 40 51-91 122-161 (225)
145 PHA02571 a-gt.4 hypothetical p 34.5 1.3E+02 0.0028 25.8 5.8 39 248-286 10-48 (109)
146 TIGR00570 cdk7 CDK-activating 34.2 5.2E+02 0.011 26.4 12.0 41 302-342 149-189 (309)
147 PF14695 LINES_C: Lines C-term 31.4 35 0.00077 23.8 1.7 22 446-467 6-27 (39)
148 TIGR01933 hflK HflK protein. H 29.3 3.6E+02 0.0078 26.2 9.3 14 29-42 148-161 (261)
149 PHA02571 a-gt.4 hypothetical p 28.7 1.9E+02 0.004 24.8 5.9 41 25-65 9-49 (109)
150 PF11101 DUF2884: Protein of u 24.6 6.4E+02 0.014 24.3 14.7 108 162-286 91-204 (229)
151 PF10944 DUF2630: Protein of u 23.4 99 0.0021 25.1 3.2 27 441-467 40-66 (81)
152 PRK10780 periplasmic chaperone 23.2 5.6E+02 0.012 23.2 12.5 54 107-174 110-163 (165)
153 cd07749 NT_Pol-beta-like_1 Nuc 22.3 60 0.0013 29.7 2.0 64 374-442 36-105 (156)
154 PF07052 Hep_59: Hepatocellula 22.0 64 0.0014 27.3 2.0 14 12-25 13-26 (104)
155 PF12053 DUF3534: Domain of un 21.3 1.2E+02 0.0026 27.5 3.7 34 151-185 7-40 (145)
156 KOG0066|consensus 21.2 1.9E+02 0.0041 31.3 5.6 46 148-216 717-765 (807)
157 PRK03459 rnpA ribonuclease P; 21.1 93 0.002 27.1 2.9 64 202-265 49-115 (122)
158 KOG2880|consensus 20.5 8.2E+02 0.018 25.6 9.7 61 13-74 60-120 (424)
159 PRK06664 fliD flagellar hook-a 20.4 1.3E+03 0.027 26.3 12.3 53 210-266 540-592 (661)
160 PF03927 NapD: NapD protein; 20.1 1.8E+02 0.004 23.2 4.2 17 155-171 7-23 (79)
161 PF15513 DUF4651: Domain of un 20.0 2.4E+02 0.0053 21.7 4.5 11 421-431 34-44 (62)
No 1
>KOG1664|consensus
Probab=100.00 E-value=1.1e-59 Score=427.73 Aligned_cols=220 Identities=62% Similarity=0.967 Sum_probs=216.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12089 27 GDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLK 106 (467)
Q Consensus 27 ~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~ 106 (467)
|||++|++||++|++||+|||+|||+||..+|++|||+||.+||++++.+|++.|++|+||++++++|..|+..|++|++
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 67888888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCc
Q psy12089 107 ALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE 186 (467)
Q Consensus 107 ~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~ 186 (467)
+|++|+++++.+|++|..+|...+.+++.|+.+|++||.||+..|++|.++|+||+.|.++|++++++|..+|..++|..
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~ 160 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccCCCCc
Q psy12089 187 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNL 246 (467)
Q Consensus 187 ~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r 246 (467)
+++.+|.+.|||++|.|||+|+|.||+|.|+|||++||+.++++.+|+||+.|||.||||
T Consensus 161 ~e~~id~~~fL~~~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~nr 220 (220)
T KOG1664|consen 161 VEVQIDKKDFLPPDVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPNR 220 (220)
T ss_pred ceeeechhccCCccccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 2
>KOG1664|consensus
Probab=100.00 E-value=3.8e-54 Score=391.65 Aligned_cols=219 Identities=63% Similarity=0.990 Sum_probs=216.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12089 249 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLK 328 (467)
Q Consensus 249 ~~d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~ 328 (467)
|||+||++||++|++||.+||+|||+||..+|++||++||.+||++++.+|++.|++|.+|++.+++|+.|+..|++|++
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCc
Q psy12089 329 ALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE 408 (467)
Q Consensus 329 ~L~ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~ 408 (467)
+|++|+.+++.+|++|+.+|...+.+++.|+.+|.+||.||+..|++|.++|+|++.|.++|+..++++...|+.++|.+
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~ 160 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccCCCCC
Q psy12089 409 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN 467 (467)
Q Consensus 409 ~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg~n~~ 467 (467)
+.+.+|++.|+|++|.|||+|.+.||+|.|+|||++||+..+.+.+|+||..|||+|||
T Consensus 161 ~e~~id~~~fL~~~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~n 219 (220)
T KOG1664|consen 161 VEVQIDKKDFLPPDVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPN 219 (220)
T ss_pred ceeeechhccCCccccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998
No 3
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=4.9e-32 Score=256.57 Aligned_cols=196 Identities=28% Similarity=0.467 Sum_probs=171.2
Q ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12089 18 FIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSS 97 (467)
Q Consensus 18 ~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S 97 (467)
=+++++..|+++++.+.+ .|+.+|+.+|++|...|.++++.+...+++.. ..+++..+++..|
T Consensus 3 ~l~~i~~~il~~A~~ea~------~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a-----------~~~ae~ek~r~~s 65 (198)
T PRK03963 3 GAELIIQEINREAEQKIE------YILEEAQKEAEKIKEEARKRAESKAEWILRKA-----------KTQAELEKQRIIA 65 (198)
T ss_pred cHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 467788888888887777 78888888888888888888877777666555 3466777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHH
Q psy12089 98 NMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAK 177 (467)
Q Consensus 98 ~~~~~~R~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~ 177 (467)
.+.+++|+.+|.+|++++++||+.|.++|.+++.+ .|+.||.+||.+|+..+++++++|+|+|.|..+++++++.+..
T Consensus 66 ~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~ 143 (198)
T PRK03963 66 NAKLEVRRKRLAVQEELISEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRD 143 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999886 7999999999999999999999999999999999998877643
Q ss_pred HHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhcc
Q psy12089 178 AYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 241 (467)
Q Consensus 178 ~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~ 241 (467)
.+| ++++++++ |++|.|||||+|.||+|+|||||++||+.+|++++|+|++.|||
T Consensus 144 ----~~~-~~~i~~~~----~~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~ 198 (198)
T PRK03963 144 ----ELG-DVEIELGE----PIETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG 198 (198)
T ss_pred ----HhC-CeEEEECC----CCCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence 345 56677663 56799999999999999999999999999999999999999997
No 4
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=9.5e-31 Score=247.75 Aligned_cols=194 Identities=29% Similarity=0.455 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12089 258 IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKE-KQVELQKKIQSSNMLNQARLKALKVREDH 336 (467)
Q Consensus 258 l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~-k~~~~~r~i~~S~a~~~aR~~~L~ar~e~ 336 (467)
|+++++.|+.+|+.++++|...|+++++........+.. .....+.++. .+++..++...|.+.++.|+.+|.+|+++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~-~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el 82 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAE-SKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEEL 82 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999875554433332 2233333443 33666666678999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCC
Q psy12089 337 VRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDND 416 (467)
Q Consensus 337 i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~ 416 (467)
+++||+.|+++|.+++.+ .|++||.+||.+|+..+++++++|+|+|.|..++.+.++.+. ..+| +++++++
T Consensus 83 ~~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~----~~~~-~~~i~~~-- 153 (198)
T PRK03963 83 ISEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIR----DELG-DVEIELG-- 153 (198)
T ss_pred HHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHH----HHhC-CeEEEEC--
Confidence 999999999999999887 799999999999999999999999999999999988776653 3445 5667666
Q ss_pred CCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccC
Q psy12089 417 QFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463 (467)
Q Consensus 417 ~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg 463 (467)
.|++|.|||||+|.||+|+|||||++||+.+|++++|.|++.|||
T Consensus 154 --~~~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~ 198 (198)
T PRK03963 154 --EPIETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG 198 (198)
T ss_pred --CCCCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999997
No 5
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.97 E-value=6.7e-31 Score=248.00 Aligned_cols=197 Identities=31% Similarity=0.491 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 121 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~ 121 (467)
||.++|+.+|++|..+|+++++..+....+.....+...+++..++++..+.+..|.+.+++|+.+|.+|+++++++|++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCc-eeEEecCCCCCCCC
Q psy12089 122 ARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE-VNLKLDNDQFLPVD 200 (467)
Q Consensus 122 a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~-~~i~i~~~~~l~~~ 200 (467)
++++|.+++.+++.|+.+|.+||.+++..+++++++|+|+|.|.++++.+++.+...|....|.. +.+..++ .+ |++
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 158 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DY-LID 158 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-----BS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-cc-cCC
Confidence 99999999998757999999999999999999999999999999999999877766676555544 3444443 22 357
Q ss_pred CCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhc
Q psy12089 201 TTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIF 240 (467)
Q Consensus 201 ~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF 240 (467)
+.|||+|++.||+|+|||||++||+.+++.+.|+|++.||
T Consensus 159 ~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF 198 (198)
T PF01991_consen 159 IIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF 198 (198)
T ss_dssp SSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence 9999999999999999999999999999999999999999
No 6
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.97 E-value=2.2e-29 Score=236.56 Aligned_cols=188 Identities=24% Similarity=0.386 Sum_probs=160.2
Q ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 16 MAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQ 95 (467)
Q Consensus 16 ~~~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~ 95 (467)
|+ ++++++.|+++++.+.+ .|+.+|+.++++|..+|+.+++..+..+.... .+++....++.
T Consensus 1 M~-l~~i~~~I~~~a~~e~~------~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a-----------~~e~~~~~~r~ 62 (188)
T PRK02292 1 MS-LETVVEDIRDEARARAS------EIRAEADEEAEEIIAEAEADAEEILEDREAEA-----------EREIEQLREQE 62 (188)
T ss_pred CC-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 45 88899999999888888 89999999999999999999877665554333 33444555578
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHH
Q psy12089 96 SSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNV 175 (467)
Q Consensus 96 ~S~~~~~~R~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~ 175 (467)
.|.+.+.+|+.+|.+|++++++||+.|.++|.+++.+ .|..+|.+||.++ ++++++|+|+|.|..+++.++..+
T Consensus 63 ~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~ 136 (188)
T PRK02292 63 LSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc
Confidence 8999999999999999999999999999999999986 7999999999998 567899999999999999887643
Q ss_pred HHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccC
Q psy12089 176 AKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 242 (467)
Q Consensus 176 ~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~ 242 (467)
.| +++.. +++|.|||+|++.+|+|+|||||++||+.+|++++|+|++.|||.
T Consensus 137 -------~~----~~~~~----~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~ 188 (188)
T PRK02292 137 -------DG----LEYAG----NIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188 (188)
T ss_pred -------cc----CeeCC----CCCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence 11 23332 357999999999999999999999999999999999999999984
No 7
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.97 E-value=5.3e-30 Score=241.88 Aligned_cols=198 Identities=30% Similarity=0.440 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 264 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 343 (467)
Q Consensus 264 ~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~~ 343 (467)
||.++|+.+|++|..+|+++++..+.....+....+...+++..++++..+....|.+.+.+|+.+|.+|+++++++|++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999888877777777777777777778887778889999999999999999999999999
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCCCCCCCCC
Q psy12089 344 ARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDT 423 (467)
Q Consensus 344 a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~ 423 (467)
++++|.+++.+++.|+.+|.+||.+++..+++++++|+|+|+|.++++.+++.+...|....|.++....++.. -+++|
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDSD-YLIDI 159 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T----BSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCcc-ccCCc
Confidence 99999999998657999999999999999999999999999999999998766555555444444333333211 12689
Q ss_pred CCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhcc
Q psy12089 424 TGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIF 462 (467)
Q Consensus 424 ~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LF 462 (467)
.|||+|.+.||+|+|||||++||+.+++.+.|.|++.||
T Consensus 160 ~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF 198 (198)
T PF01991_consen 160 IGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF 198 (198)
T ss_dssp SSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence 999999999999999999999999999999999999999
No 8
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.96 E-value=1.1e-28 Score=230.71 Aligned_cols=182 Identities=21% Similarity=0.353 Sum_probs=158.2
Q ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 16 MAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQ 95 (467)
Q Consensus 16 ~~~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~ 95 (467)
|+ ++++++.|+++++.+.+ .|+.+|+.+|++|...|+++++..+..+..+. ..+++..++++
T Consensus 1 Ms-le~i~~~I~~ea~~~a~------~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~-----------~~e~~~~~~ri 62 (185)
T PRK01194 1 MS-LEDVIKDIEKSREEKKK------EINDEYSKRIEKLEKECDSKIQSIKEYYEKKM-----------RAEISRLKKSI 62 (185)
T ss_pred CC-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 45 78999999999999988 89999999999999999999977666554443 45777778888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHH
Q psy12089 96 SSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNV 175 (467)
Q Consensus 96 ~S~~~~~~R~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~ 175 (467)
.|.+..++|+.+|.+|+++|++||+.|.++|.++++++ .|+++|.+||.+|+..+ +|+++|+|++.|..++++.
T Consensus 63 is~A~Le~R~~~L~aree~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~---- 136 (185)
T PRK01194 63 IDKANIEARSIKREKRREILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA---- 136 (185)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC----
Confidence 99999999999999999999999999999999999765 79999999999999994 6899999999999988752
Q ss_pred HHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccC
Q psy12089 176 AKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 242 (467)
Q Consensus 176 ~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~ 242 (467)
++++ +|++|.|||||+|.||+|++||||++++ ++++|+||..||..
T Consensus 137 ------------~l~~-----~~~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~~ 182 (185)
T PRK01194 137 ------------KIKF-----ADIDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYEN 182 (185)
T ss_pred ------------ceee-----CCccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHhh
Confidence 2333 3467999999999999999999998876 78889999999973
No 9
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.96 E-value=4.5e-28 Score=227.70 Aligned_cols=185 Identities=21% Similarity=0.348 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12089 258 IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQ-VELQKKIQSSNMLNQARLKALKVREDH 336 (467)
Q Consensus 258 l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~-~~~~r~i~~S~a~~~aR~~~L~ar~e~ 336 (467)
|+++++.|+++|+.++++|..+|+++++.... -.+.+..+|..++.++... .......+.|.+.+..|+.+|.+|+++
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~~i~~-ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~ 81 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAEEIIA-EAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEV 81 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999986222 2223334577777776544 444444557999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCC
Q psy12089 337 VRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDND 416 (467)
Q Consensus 337 i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~ 416 (467)
+++||+.|+++|.+++.+ .|..+|.+||.++ ++++++|+|+|.|..+++.++... ..+ ++.
T Consensus 82 l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~---------~~~--~~~-- 142 (188)
T PRK02292 82 LEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY---------DGL--EYA-- 142 (188)
T ss_pred HHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc---------ccC--eeC--
Confidence 999999999999999986 7999999999998 467899999999999998876432 112 333
Q ss_pred CCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccCC
Q psy12089 417 QFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 464 (467)
Q Consensus 417 ~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg~ 464 (467)
.+++|.|||||++++|+|+|||||++||+.++++++|.|++.|||.
T Consensus 143 --~~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~ 188 (188)
T PRK02292 143 --GNIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188 (188)
T ss_pred --CCCCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence 3467999999999999999999999999999999999999999984
No 10
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.96 E-value=2e-27 Score=222.85 Aligned_cols=191 Identities=28% Similarity=0.464 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12089 36 IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHV 115 (467)
Q Consensus 36 i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l 115 (467)
+..|+++|.++|++++++|...|.++++..+.+........+..-+.+..+++++.+++++|++.+++|+.+|.+++++|
T Consensus 4 ~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l 83 (194)
T COG1390 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEIL 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCC
Q psy12089 116 RNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQ 195 (467)
Q Consensus 116 ~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~ 195 (467)
+.+|+.+.++|.+++.+| .|.. |..|+.+++..+.+++++|++++.|..++..++.+. + ....+.
T Consensus 84 ~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~~--------~--~~~~~~--- 148 (194)
T COG1390 84 ESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILREL--------K--IGVELG--- 148 (194)
T ss_pred HHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhhc--------c--cchhcc---
Confidence 999999999999999997 4555 999999999999999999999999999988776541 1 112222
Q ss_pred CCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccC
Q psy12089 196 FLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 242 (467)
Q Consensus 196 ~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~ 242 (467)
.+++|.|||++++.||+|.+||||++||+.++..+.|.|+..||+.
T Consensus 149 -~~~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~ 194 (194)
T COG1390 149 -EGIDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV 194 (194)
T ss_pred -ccCCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999999999999999999999999984
No 11
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.96 E-value=1e-27 Score=224.27 Aligned_cols=178 Identities=24% Similarity=0.383 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12089 258 IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQ-VELQKKIQSSNMLNQARLKALKVREDH 336 (467)
Q Consensus 258 l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~-~~~~r~i~~S~a~~~aR~~~L~ar~e~ 336 (467)
|++|++.|.++|+.+|++|...|+++++.-.. -.+++.+++.++|.++.+. +...++...|++.+++|+.+|.+|+++
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~aeei~~-ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~ 81 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIEKLEK-ECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREI 81 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 78999999999999999999999999986322 4445557888888888754 555444447999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCC
Q psy12089 337 VRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDND 416 (467)
Q Consensus 337 i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~ 416 (467)
|++||+.|+++|.++++++ .|+++|.+||.+|+..+ +|+++|+|+++|.+++++. ++++
T Consensus 82 I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~----------------~l~~--- 140 (185)
T PRK01194 82 LKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA----------------KIKF--- 140 (185)
T ss_pred HHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC----------------ceee---
Confidence 9999999999999999765 89999999999999984 6899999999999988763 2333
Q ss_pred CCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccC
Q psy12089 417 QFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463 (467)
Q Consensus 417 ~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg 463 (467)
++++|.|||||+|.||+|++||||++++ ++++|.||..||.
T Consensus 141 --~~~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~ 181 (185)
T PRK01194 141 --ADIDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYE 181 (185)
T ss_pred --CCccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHh
Confidence 3467999999999999999999999988 5788999999995
No 12
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.96 E-value=9.3e-27 Score=218.27 Aligned_cols=192 Identities=28% Similarity=0.441 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12089 257 QIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDH 336 (467)
Q Consensus 257 ~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~ 336 (467)
.+++|+++|.++|+++|++|...|.++++..+.+........+...+.+..++++..++...|+|.+++|+.+|++++++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999988888888888777777888888887778999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCC
Q psy12089 337 VRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDND 416 (467)
Q Consensus 337 i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~ 416 (467)
++.+|+.+.++|.+++.+| .|.. |..|+.+++..+.+++++||+++.|..++.+++.+ .+. ...+
T Consensus 83 l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~--------~~~--~~~~--- 147 (194)
T COG1390 83 LESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRE--------LKI--GVEL--- 147 (194)
T ss_pred HHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh--------ccc--chhc---
Confidence 9999999999999999987 4555 99999999999999999999999999998877643 111 1222
Q ss_pred CCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccCC
Q psy12089 417 QFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 464 (467)
Q Consensus 417 ~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg~ 464 (467)
..+++|.|||++++.||++++||||++||+.+++.+.|.|+..|||+
T Consensus 148 -~~~~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~ 194 (194)
T COG1390 148 -GEGIDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV 194 (194)
T ss_pred -cccCCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 24578999999999999999999999999999999999999999984
No 13
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.89 E-value=5.1e-21 Score=181.10 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=153.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy12089 251 DADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKAL 330 (467)
Q Consensus 251 d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L 330 (467)
+.++|.=+++|.+.|..+|+.+|++|+.+|+++++. |+.+.+.+...-..+-.+++...+++..|++.+.+|..+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe~----Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAEE----IIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999986 6666654433333333344555555558999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcce
Q psy12089 331 KVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVN 410 (467)
Q Consensus 331 ~ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~ 410 (467)
.+++.+++.+.+.+.+.+.+.. +++.|..++.+|+.... +++++.|+++|+|...+++.|.... +..+|.+
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~~~---~~~l~~g-- 148 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRAAL---GNKLKKG-- 148 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHHHH---HHHhcCC--
Confidence 9999999766444444445433 44579999999999865 4678999999999999999876543 4444533
Q ss_pred EEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhc
Q psy12089 411 LKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAI 461 (467)
Q Consensus 411 i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~L 461 (467)
+++. .+.+|.|||+|.+.||+|.+|||||++++.+.+.+.|.++++|
T Consensus 149 i~i~----~~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l 195 (198)
T PRK01558 149 IELK----PFKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI 195 (198)
T ss_pred eEEc----ccCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence 5555 3567999999999999999999999999999999999999987
No 14
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.86 E-value=1.9e-19 Score=170.37 Aligned_cols=188 Identities=20% Similarity=0.187 Sum_probs=140.6
Q ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12089 18 FIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSS 97 (467)
Q Consensus 18 ~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S 97 (467)
.++.+...++++++.+++ .|+.+|+.+|++|..+|+++++. + .++-.++++..+++..|
T Consensus 8 l~dki~~~~~eeA~~eA~------~Ii~eA~~eAe~Ii~eA~~eAe~----i-----------~~kAe~ea~~~~~~~~s 66 (198)
T PRK01558 8 LINKIKKDGLEEAERLAN------EIILEAKEEAEEIIAKAEEEAKE----L-----------KAKAEKEANDYKRHALE 66 (198)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH----H-----------HHHHHHHHHHHHHHHHH
Confidence 456666666666666666 67777777777777777666542 2 22235567777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHH
Q psy12089 98 NMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAK 177 (467)
Q Consensus 98 ~~~~~~R~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~ 177 (467)
.+....|..+|.+++++++.+.+.+.+.+.+.. +++.|..++..|+.... +++++.|+++|+|...+++.+.+
T Consensus 67 aa~l~~r~~ll~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~--- 139 (198)
T PRK01558 67 ASRQAGRDLLISFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA--- 139 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---
Confidence 999999999999999999755444444445433 45589999999998754 56778999999999888876543
Q ss_pred HHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHh
Q psy12089 178 AYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAI 239 (467)
Q Consensus 178 ~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~L 239 (467)
.++...|. .+++.. +.+|.|||+|.+.||++.+|||||++++++.+.+.|.++++|
T Consensus 140 ~~~~~l~~--gi~i~~----~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l 195 (198)
T PRK01558 140 ALGNKLKK--GIELKP----FKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI 195 (198)
T ss_pred HHHHHhcC--CeEEcc----cCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence 23444443 355654 457999999999999999999999999999999999999987
No 15
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=99.81 E-value=1.1e-17 Score=158.49 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=141.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy12089 251 DADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR---LKIMEYYDRKEKQVELQKKIQSSNMLNQARL 327 (467)
Q Consensus 251 d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~---~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~ 327 (467)
+..+|.=+++|...|+.+|+.+|++|+..|+++++. |+.+.+ .+|.+.+. ++++..+....|++.+.+|.
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae~----Ii~eA~~EAe~ii~~A~---~eae~ek~r~~s~a~l~~R~ 79 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAKR----IIAEAQEEAEKIIRSAE---ETADQKLKQGESALVQAGKR 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 566777799999999999999999999999999975 666555 44444443 33455555567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-cChhHHHHHHHHHHHHHHHhcCCC--------ceEEEeccccHHHHHhhHHHH-
Q psy12089 328 KALKVREDHVRNVLDEARKRLGEVT-KNRDKYTQLIEKLIIQGLLQLLEP--------NVLIRSREVDKDIVNAVLPNV- 397 (467)
Q Consensus 328 ~~L~ar~e~i~~v~~~a~~~L~~l~-~~~~~Y~~~L~~Li~e~~~~l~~~--------~~~I~~~~~D~~~v~~~~~~~- 397 (467)
.+|.+++++++.+|..+.+.+.+-. .+ ++||.+||..-+...... -+...++|.++.- .+...
T Consensus 80 ~~l~aKqevi~~vf~~a~~~lv~~~~~d----~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~ 152 (207)
T PRK01005 80 SLESLKQAVENKIFRESLGEWLEHVLTD----PEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNE---LLGKEV 152 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHH---HHHHHH
Confidence 9999999999999999999987743 34 678888888655544221 1344566666544 23222
Q ss_pred HHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccCC
Q psy12089 398 AKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 464 (467)
Q Consensus 398 ~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg~ 464 (467)
.+.+ ...+ |+++. ..|||+|.+.||++.+|||++++++.+|+.++|.++.+|||+
T Consensus 153 ~~~l---~~~g--v~~~~-------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~ 207 (207)
T PRK01005 153 TKKL---KEKG--VSVGS-------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG 207 (207)
T ss_pred HHHH---HHcC--eEEec-------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence 2222 1233 45553 269999999999999999999999999999999999999984
No 16
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=99.79 E-value=4.8e-17 Score=154.28 Aligned_cols=185 Identities=14% Similarity=0.148 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12089 36 IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHV 115 (467)
Q Consensus 36 i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l 115 (467)
+++|...|+.+|+.+|++|...|..+++. |+.+.+.....-.+.-.++++..++...|.+...+|..+|.++++++
T Consensus 14 ~dki~~eiL~eA~~eA~~Il~eAk~~Ae~----Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi 89 (207)
T PRK01005 14 CDALREETLKPAEEEAGAIVHNAKEQAKR----IIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVE 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555444432 33333333333333335566777778999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc-ChhHHHHHHHHHHHHHHHhcCCC--------cEEEEeccccHHHHHhhHHHHHHHHHHHhCCc
Q psy12089 116 RNVLDEARKRLGEVTK-NRDKYTQLIEKLIIQGLLQLLEP--------NVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE 186 (467)
Q Consensus 116 ~~v~~~a~e~L~~~~~-~~~~Y~~lL~~Li~q~~~~l~e~--------~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~ 186 (467)
+.+|..+.+.|..-.- | ++||..||..-+...... -+...++|.|+.-. +...+.+.+. ..+
T Consensus 90 ~~vf~~a~~~lv~~~~~d----~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~---~~g 160 (207)
T PRK01005 90 NKIFRESLGEWLEHVLTD----PEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLK---EKG 160 (207)
T ss_pred HHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHH---HcC
Confidence 9999999999777544 4 677788777555444221 13345666654432 3333233332 122
Q ss_pred eeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccC
Q psy12089 187 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 242 (467)
Q Consensus 187 ~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~ 242 (467)
++++. ..|||+|.+.||++.+|||+|++++.+|+.+.|.++..|||.
T Consensus 161 --v~~~~-------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~ 207 (207)
T PRK01005 161 --VSVGS-------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG 207 (207)
T ss_pred --eEEec-------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence 45543 269999999999999999999999999999999999999984
No 17
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=99.20 E-value=9.1e-09 Score=101.39 Aligned_cols=186 Identities=16% Similarity=0.194 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHH-----HHHHHHH------HHHHHHHHHhHH-H
Q psy12089 261 MMAFIEQEANEKAEEIDAKAEEEFNIEKGRLV------QHQRLKIMEY-----YDRKEKQ------VELQKKIQSSNM-L 322 (467)
Q Consensus 261 m~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv------~~e~~~I~~~-----~~~k~k~------~~~~r~i~~S~a-~ 322 (467)
-...++..|+.+|.+|+..|+.+++.....+. +.+..++.+. |+.-..+ ......++.+.. .
T Consensus 41 ~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i~ 120 (255)
T TIGR03825 41 EFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAIV 120 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888877776444331 1122222211 2111111 011111111111 1
Q ss_pred HHHH---HHHH-HHHHHHHHHHHHHHHHHHhhh-hcChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHhhHHH
Q psy12089 323 NQAR---LKAL-KVREDHVRNVLDEARKRLGEV-TKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPN 396 (467)
Q Consensus 323 ~~aR---~~~L-~ar~e~i~~v~~~a~~~L~~l-~~~~~~Y~~~L~~Li~e~~~~l~~-~~~~I~~~~~D~~~v~~~~~~ 396 (467)
..++ ...+ ..+.++++=++.-|..=+... ..+ +..+..|+.+++..++. +.++|+|+|.|.+.+....+.
T Consensus 121 ~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~~----~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~ 196 (255)
T TIGR03825 121 EEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAED----KNAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDE 196 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHH
Confidence 1121 1222 234444444455554445443 233 45678888888888776 469999999999999987665
Q ss_pred HHHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHH
Q psy12089 397 VAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRV 459 (467)
Q Consensus 397 ~~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~ 459 (467)
+. ..+|....+.|-. .|.-..||++|.+.+|. ||+|+++||+.++..++..+..
T Consensus 197 l~----~~~~~~~~i~i~~---D~~l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l~~ 250 (255)
T TIGR03825 197 LQ----SILPACEHLAVYP---DEKLPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEALKE 250 (255)
T ss_pred HH----hhcCCCCceEEEe---CCCCCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHHhc
Confidence 43 3344433434332 23346799999999996 9999999999999988877654
No 18
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=99.18 E-value=1.1e-08 Score=100.75 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC-CcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeE
Q psy12089 111 REDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNL 189 (467)
Q Consensus 111 r~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e-~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i 189 (467)
+.++++=++.-|..=+...-.. -+..+..|+.+++..++. +.++|+|+|.|++.+....+.+... .|....+
T Consensus 135 e~el~~La~~iAeKIi~~el~~---~~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~l~~~----~~~~~~i 207 (255)
T TIGR03825 135 QPLIIELACALAEKVIGVSLAE---DKNAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDELQSI----LPACEHL 207 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHHHHhh----cCCCCce
Confidence 4444544455444445443222 145678888888888876 4799999999999998876655333 3433334
Q ss_pred EecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHH
Q psy12089 190 KLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIR 236 (467)
Q Consensus 190 ~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~ 236 (467)
.|-.+ |.-..||++|.+.+|. ||+|+++||+.++..++-.+.
T Consensus 208 ~i~~D---~~l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l~ 249 (255)
T TIGR03825 208 AVYPD---EKLPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEALK 249 (255)
T ss_pred EEEeC---CCCCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHHh
Confidence 44322 2235799999999996 899999999999998877664
No 19
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=99.12 E-value=4.5e-08 Score=97.84 Aligned_cols=110 Identities=18% Similarity=0.320 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC-CcEEEEeccccHHHHHhhHHHHHHHHHHHhCC--c
Q psy12089 110 VREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGK--E 186 (467)
Q Consensus 110 ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e-~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~--~ 186 (467)
...++++-++.-|..-|..+..+ .+.++..++.+++..+.+ +.++|+++|.|++++.....++...+ +. .
T Consensus 164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l----~~~~~ 236 (281)
T PRK06669 164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLL----DNEEH 236 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhc----CCCCC
Confidence 45556666666666656444433 478888999999988755 57999999999999998877664433 33 3
Q ss_pred eeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchH
Q psy12089 187 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIP 233 (467)
Q Consensus 187 ~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp 233 (467)
+.|..|+ .++ .||++|.+++|. ||+|+++||+.++..++.
T Consensus 237 i~I~~D~--~l~---~GgcvIet~~G~--IDasi~tqLe~l~~~L~e 276 (281)
T PRK06669 237 LKIYEDD--AIS---KGGCVIETDFGN--IDARIDTQLKQLKEKLLE 276 (281)
T ss_pred eEEEECC--CCC---CCCeEEEcCCCe--eeccHHHHHHHHHHHHHh
Confidence 4555554 243 499999999886 999999999999887654
No 20
>PRK06937 type III secretion system protein; Reviewed
Probab=99.07 E-value=3.7e-08 Score=93.90 Aligned_cols=166 Identities=20% Similarity=0.243 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 121 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~ 121 (467)
.|+.+|++.|++|...|+++|+..+..= |+.-..+...+..-.......+...-.-...+++++=++.-
T Consensus 34 ~il~~A~~~A~~i~~~A~~~~e~~~~~G-----------y~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl~i 102 (204)
T PRK06937 34 ELVEAARQRAEEIEAEAQEVYEQQKQLG-----------YQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVLEA 102 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999997644322 32222222221111111112222222334455666655555
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC-CcEEEEeccccHHHHHhhHHHHHHHHHHHhCC-ceeEEecCCCCCCC
Q psy12089 122 ARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGK-EVNLKLDNDQFLPV 199 (467)
Q Consensus 122 a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e-~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~-~~~i~i~~~~~l~~ 199 (467)
|++=+..+. -++++..++.+++..+.+ +.++|+++|+|.+.+...+......+. |. .+.|..|+. +
T Consensus 103 a~kil~~~~-----~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~---~~~~l~i~~D~~--L-- 170 (204)
T PRK06937 103 VRKILNDYD-----DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFP---EVGYLEVVADAR--L-- 170 (204)
T ss_pred HHHHHhccC-----cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCC---CCccEEEEeCCC--C--
Confidence 555555432 267788888888888754 479999999999999987776543332 21 245555542 3
Q ss_pred CCCccEEEEecCCceEEeccHHHHHHHHHHhchH
Q psy12089 200 DTTGGIELLAQRGKIKISNTLEARLELIAQQIIP 233 (467)
Q Consensus 200 ~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp 233 (467)
..||++|.+..|. ||+||++||+.+...+..
T Consensus 171 -~~Ggc~iET~~G~--vDasl~tql~~l~~al~~ 201 (204)
T PRK06937 171 -DQGGCILETEVGI--IDASLDGQLEALEQAFHS 201 (204)
T ss_pred -CCCCeEEecCCce--EEccHHHHHHHHHHHHHH
Confidence 4699999999885 999999999988876643
No 21
>PRK06937 type III secretion system protein; Reviewed
Probab=99.05 E-value=8.5e-08 Score=91.43 Aligned_cols=184 Identities=22% Similarity=0.270 Sum_probs=119.1
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhH
Q psy12089 243 NPNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQ--VELQKKIQSSN 320 (467)
Q Consensus 243 ~~~r~~~~d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~--~~~~r~i~~S~ 320 (467)
.|.++-+...+...-++ -+.|+.+|+++|++|...|++.++..+. +.|+.-..+ .+....+..+
T Consensus 15 ~~~~~vl~a~~~~~~~~--A~~il~~A~~~A~~i~~~A~~~~e~~~~-----------~Gy~~G~~~a~~e~~e~l~~~- 80 (204)
T PRK06937 15 APGLRVLRAEDYQSLLS--AEELVEAARQRAEEIEAEAQEVYEQQKQ-----------LGYQAGLDEARTEQAELILET- 80 (204)
T ss_pred CcccccccHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH-
Confidence 46677777777776655 4689999999999999999999886333 222222222 1111222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHhhHHHHHH
Q psy12089 321 MLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAK 399 (467)
Q Consensus 321 a~~~aR~~~L~ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~-~~~~I~~~~~D~~~v~~~~~~~~~ 399 (467)
..+.....-...+++++=++.-++.=+..+. + ++++..++.+++..+.+ +.++|+++|.|.+.+...+.....
T Consensus 81 -~~~~~~~~~~~e~~l~~Lvl~ia~kil~~~~-~----~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~ 154 (204)
T PRK06937 81 -VLQCQEFYRGVEQQMSEVVLEAVRKILNDYD-D----VERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLK 154 (204)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c----HHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 1122222234455566655555555554432 2 57788888888887754 469999999999999987766543
Q ss_pred HHHHHhC-CcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHH
Q psy12089 400 AYQDVAG-KEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPD 456 (467)
Q Consensus 400 ~~~~~~g-~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~ 456 (467)
.+ -| ..+.|..|+ .=..||++|.+..|. ||+||++||+.+...+...
T Consensus 155 ~~---~~~~~l~i~~D~-----~L~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~ 202 (204)
T PRK06937 155 DF---PEVGYLEVVADA-----RLDQGGCILETEVGI--IDASLDGQLEALEQAFHST 202 (204)
T ss_pred hC---CCCccEEEEeCC-----CCCCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence 32 11 124555554 225799999999885 9999999999888776543
No 22
>PRK09098 type III secretion system protein HrpB; Validated
Probab=99.04 E-value=2e-07 Score=90.48 Aligned_cols=182 Identities=19% Similarity=0.162 Sum_probs=113.9
Q ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HH
Q psy12089 16 MAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQ--KK 93 (467)
Q Consensus 16 ~~~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~--k~ 93 (467)
.+-+.-....++..+.-+++ .|+.+|+++|++|...|.++|+..+.+= |..-..+...+ .+
T Consensus 34 ~~~~~~~~~~ila~Ar~~A~------~Il~~A~~~A~~I~~~A~~e~e~~~~~G-----------y~eG~~~a~~e~~~~ 96 (233)
T PRK09098 34 LAAVHAERDAVLAAARARAE------RIVAEARAQAEAILEAARREADRSARRG-----------YAAGLRQALAEWHAR 96 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 34445555666666666666 7888888888888888888876544322 22222222111 11
Q ss_pred HH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhc--CCCcEEEEeccccHHHHHh
Q psy12089 94 IQ-SSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQL--LEPNVLIRSREVDKDIVNA 170 (467)
Q Consensus 94 i~-~S~~~~~~R~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l--~e~~vvv~~~~~D~~~v~~ 170 (467)
+. ........+ ...++++++=++..+++-+... + +..|-..+.+++..+ +.+.++|+++|.|.+.+..
T Consensus 97 ~~~~~~~~~~~~---~~~e~~Lv~lv~~~v~kiv~~~--d----~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~ 167 (233)
T PRK09098 97 GADHAFAERRAA---RRMRERLAEIVAAAVEQIVLGE--D----RAALFARAAQTLERVVDGASYLTVRVHPADLDAARA 167 (233)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHH
Confidence 11 111111222 2247778887887777777653 3 345556666777654 3568999999999999998
Q ss_pred hHHHHHHHHHHHhCCc--eeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHH
Q psy12089 171 VLPNVAKAYQDVAGKE--VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPD 234 (467)
Q Consensus 171 ~i~~~~~~~~~~~g~~--~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~ 234 (467)
.+...... .|.. +.|.-|+ .++ -||+++.+..| .||+||++||+.+.+-+...
T Consensus 168 ~~~~~~~~----~g~~~~l~Iv~Dp--~L~---~GgCviET~~G--~IDasl~~ql~~L~~al~~~ 222 (233)
T PRK09098 168 AFGAAAAA----GGRNVPVEVVGDP--RLA---PGACVCEWDFG--VFDASLDTQLRALRRALARA 222 (233)
T ss_pred HHHHHHHh----cCCCcceEEEeCC--CCC---CCCeEEEeCCC--eEecCHHHHHHHHHHHHHHH
Confidence 87765332 3443 3444444 244 59999999988 67999999998887766544
No 23
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=98.99 E-value=2.4e-07 Score=92.65 Aligned_cols=110 Identities=18% Similarity=0.326 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHhhHHHHHHHHHHHhCC--c
Q psy12089 332 VREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGK--E 408 (467)
Q Consensus 332 ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~-~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~--~ 408 (467)
...++++-++.-|+.-|..+..+ .+.++..++.+++..+.+ +.++|+++|.|.+++.......... .+. +
T Consensus 164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~----l~~~~~ 236 (281)
T PRK06669 164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISL----LDNEEH 236 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHh----cCCCCC
Confidence 45556666676666666444433 477888888888887765 5799999999999999887665433 343 4
Q ss_pred ceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhH
Q psy12089 409 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIP 455 (467)
Q Consensus 409 ~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p 455 (467)
+.|..|+. + ..||++|.+++|. ||+|+++||+.+++.++.
T Consensus 237 i~I~~D~~--l---~~GgcvIet~~G~--IDasi~tqLe~l~~~L~e 276 (281)
T PRK06669 237 LKIYEDDA--I---SKGGCVIETDFGN--IDARIDTQLKQLKEKLLE 276 (281)
T ss_pred eEEEECCC--C---CCCCeEEEcCCCe--eeccHHHHHHHHHHHHHh
Confidence 55655542 3 3599999999886 999999999998887654
No 24
>PRK09098 type III secretion system protein HrpB; Validated
Probab=98.98 E-value=4.5e-07 Score=88.09 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhc--CCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCc-
Q psy12089 332 VREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQL--LEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE- 408 (467)
Q Consensus 332 ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l--~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~- 408 (467)
.++.+++=++.-++.-+... + +..|-..+.+++..+ +.+.++|+|+|.|.+.+...+..... ..|..
T Consensus 111 ~e~~Lv~lv~~~v~kiv~~~--d----~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~----~~g~~~ 180 (233)
T PRK09098 111 MRERLAEIVAAAVEQIVLGE--D----RAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAA----AGGRNV 180 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHH----hcCCCc
Confidence 46777777777777777643 3 344455666666543 35679999999999999988766533 24443
Q ss_pred -ceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHH
Q psy12089 409 -VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDI 457 (467)
Q Consensus 409 -~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I 457 (467)
+.|.-|+. + .-||+++.+..| .||+||++||+.+...+...+
T Consensus 181 ~l~Iv~Dp~--L---~~GgCviET~~G--~IDasl~~ql~~L~~al~~~l 223 (233)
T PRK09098 181 PVEVVGDPR--L---APGACVCEWDFG--VFDASLDTQLRALRRALARAL 223 (233)
T ss_pred ceEEEeCCC--C---CCCCeEEEeCCC--eEecCHHHHHHHHHHHHHHHh
Confidence 44554542 3 369999999988 679999999998877665433
No 25
>PRK06328 type III secretion system protein; Validated
Probab=98.94 E-value=5.3e-07 Score=87.06 Aligned_cols=170 Identities=17% Similarity=0.236 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 121 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~ 121 (467)
.|+..|++.|++|...|.++++..+..--++. |+.-..+... ....+......-.-...+++++=++.-
T Consensus 33 ~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eG-------y~eG~~~~~~----~~~~l~~~~~~~~~~~e~~lv~Lal~i 101 (223)
T PRK06328 33 ELLEKTKEDSEAYTQETHEECEKLREEAKNQG-------FKEGSKAWSK----QLAFLEEETQKLREQVKEALVPLAIAS 101 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999988888876554333222 2222221110 111122222211122345666666666
Q ss_pred HHHHHhhhh-cChhHHHHHHHHHHHHHHHhcCC-CcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCC
Q psy12089 122 ARKRLGEVT-KNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPV 199 (467)
Q Consensus 122 a~e~L~~~~-~~~~~Y~~lL~~Li~q~~~~l~e-~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~ 199 (467)
|++=+..-. .+ ++.+..++.+++..+.. ..++|+|+|.|++++....+++...+... ..+.|..|+. +
T Consensus 102 a~kVi~~el~~d----~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~--~~~~I~~D~~--L-- 171 (223)
T PRK06328 102 VKKIIGKELELH----PETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYA--DSLIISPKAD--V-- 171 (223)
T ss_pred HHHHHHHHHhhC----HHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCC--CceEEEeCCC--C--
Confidence 666665532 33 56777888888887754 36999999999999998766554333211 2345555542 4
Q ss_pred CCCccEEEEecCCceEEeccHHHHHHHHHHhchHHH
Q psy12089 200 DTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDI 235 (467)
Q Consensus 200 ~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I 235 (467)
.-||++|.+..| .||.|+++||+.+...+.-.+
T Consensus 172 -~~GgCiIET~~G--~VDasle~ql~~l~~al~~~l 204 (223)
T PRK06328 172 -TPGGCIIETEAG--IINAQLDVQLAALEKAFSTIL 204 (223)
T ss_pred -CCCCeEEEeCCc--eEEecHHHHHHHHHHHHHHHH
Confidence 369999999988 678999999988877665444
No 26
>PRK06328 type III secretion system protein; Validated
Probab=98.83 E-value=2.2e-06 Score=82.76 Aligned_cols=191 Identities=17% Similarity=0.251 Sum_probs=123.1
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12089 243 NPNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNML 322 (467)
Q Consensus 243 ~~~r~~~~d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~ 322 (467)
.|+++-+...+.+.-++ -+.|+..|++.|++|...|.++++..+..- . .+.|+.-..+. ...+ ..+.
T Consensus 14 ~~~~~vl~~~~~~~~~~--A~~il~~a~~~ae~i~~ea~~e~E~i~eeA----~---~eGy~eG~~~~--~~~~--~~l~ 80 (223)
T PRK06328 14 APNKKVLSPEAFSALLD--AQELLEKTKEDSEAYTQETHEECEKLREEA----K---NQGFKEGSKAW--SKQL--AFLE 80 (223)
T ss_pred CCccccccHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHH--HHHH--HHHH
Confidence 47888888888887766 578999999999999999999998633322 2 12333222221 1111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHhhHHHHHHH
Q psy12089 323 NQARLKALKVREDHVRNVLDEARKRLGEV-TKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKA 400 (467)
Q Consensus 323 ~~aR~~~L~ar~e~i~~v~~~a~~~L~~l-~~~~~~Y~~~L~~Li~e~~~~l~~-~~~~I~~~~~D~~~v~~~~~~~~~~ 400 (467)
.....-.-...+.+++=++.-|+.=+..- ..+ ++.+..++.+++..+.. ..++|+|||.|.+++....++....
T Consensus 81 ~~~~~~~~~~e~~lv~Lal~ia~kVi~~el~~d----~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~ 156 (223)
T PRK06328 81 EETQKLREQVKEALVPLAIASVKKIIGKELELH----PETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKI 156 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHh
Confidence 21121112234566666666666666553 333 56777888888877754 3599999999999998876554332
Q ss_pred HHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHH
Q psy12089 401 YQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRV 459 (467)
Q Consensus 401 ~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~ 459 (467)
+... ..+.|..|+. + --||++|.+..| .||.|+++||+.+...+...+..
T Consensus 157 ~~~~--~~~~I~~D~~--L---~~GgCiIET~~G--~VDasle~ql~~l~~al~~~l~~ 206 (223)
T PRK06328 157 VEYA--DSLIISPKAD--V---TPGGCIIETEAG--IINAQLDVQLAALEKAFSTILKH 206 (223)
T ss_pred ccCC--CceEEEeCCC--C---CCCCeEEEeCCc--eEEecHHHHHHHHHHHHHHHHcc
Confidence 2111 2355655542 3 469999999888 67999999999888777655543
No 27
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.71 E-value=4e-06 Score=82.22 Aligned_cols=168 Identities=23% Similarity=0.339 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 342 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~ 342 (467)
...+++|+.++.+|...|..+++.++..++.+....+....++....++.+ ....+-..|.++.+-++.
T Consensus 63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E-----------~~~a~~~l~~ei~~la~~ 131 (246)
T TIGR03321 63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRRE-----------QAALSDELRRRTGAEVFA 131 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 347788999999999999999998888888777765544333222222222 222223345555555555
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHHHHHHhc--------------CCCceEEEe-ccccHHHHHhhHHHHHHHHHHHhCC
Q psy12089 343 EARKRLGEVTKNRDKYTQLIEKLIIQGLLQL--------------LEPNVLIRS-REVDKDIVNAVLPNVAKAYQDVAGK 407 (467)
Q Consensus 343 ~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l--------------~~~~~~I~~-~~~D~~~v~~~~~~~~~~~~~~~g~ 407 (467)
-|..-|...... .....++...|.+ +..+ ++..++|++ .|=+-.... .+...+...+|.
T Consensus 132 ~A~kil~~~~d~-~~~~~lid~~i~~-l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~----~i~~~l~~~~~~ 205 (246)
T TIGR03321 132 IARKVLTDLADT-DLEERMVDVFVQR-LRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQRE----QIRDTIRETLGP 205 (246)
T ss_pred HHHHHHHHhcCh-HHHHHHHHHHHHH-hhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHH----HHHHHHHHHHCC
Confidence 555555553322 2344444444432 1111 122355543 222222222 222233445676
Q ss_pred cceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhh
Q psy12089 408 EVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 453 (467)
Q Consensus 408 ~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~ 453 (467)
.+.++.. .+++++|||+|.. |+.++|+|+.++|+.+...+
T Consensus 206 ~v~~~~~----vdp~ligGi~l~~--g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 206 EIRLRFQ----TEPDLIGGIELTA--GGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred CeeEEee----eCchhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence 6555544 3458999999999 89999999999999887653
No 28
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=98.70 E-value=1.8e-06 Score=79.12 Aligned_cols=150 Identities=16% Similarity=0.100 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHH
Q psy12089 261 MMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALK-VREDHVRN 339 (467)
Q Consensus 261 m~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~-ar~e~i~~ 339 (467)
--+.|+.+|+.+|+.|+..|+++++..+..-.++...+-..+....... ... .+...+. ....+++
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~-----------~~~-~~~~~~~~~e~~l~~- 80 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAE-----------WQQ-EAEQLEASLEERLAE- 80 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-HHHHHHHHHHHHHHH-
Confidence 3578999999999999999999998755544333332222222211111 111 1111111 1233333
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCCCC
Q psy12089 340 VLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQF 418 (467)
Q Consensus 340 v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~-~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~~~ 418 (467)
+.-.+-+++..-.. .++++..++.+++..+.. +.++|+|+|.|.+.+...+..... ..| ++|.-|
T Consensus 81 l~~~~~~kil~~~~----~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~----~~~--~~i~~D---- 146 (166)
T TIGR02499 81 LVLQALEQILGEYD----EPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLA----LEP--WELEPD---- 146 (166)
T ss_pred HHHHHHHHHhCCCC----CHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhc----cCC--eEEeeC----
Confidence 33333333322222 356777777777766654 579999999999999988765421 112 444444
Q ss_pred CCCCCCCcEEEEecCCcEEE
Q psy12089 419 LPVDTTGGIELLAQRGKIKI 438 (467)
Q Consensus 419 ~~~~~~GGvvl~s~dG~I~v 438 (467)
|.-..||++|.+.+|.|.+
T Consensus 147 -~~l~~G~c~vet~~G~vda 165 (166)
T TIGR02499 147 -ASLAPGACVLETESGVVDL 165 (166)
T ss_pred -CCCCCCCEEEEeCCceeeC
Confidence 3346899999999998754
No 29
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=98.68 E-value=2.8e-06 Score=77.93 Aligned_cols=148 Identities=17% Similarity=0.106 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALK-VREDHVRNVL 119 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~-ar~e~l~~v~ 119 (467)
..|+.+|+.+|+.|...|+++++..+..-.++....-..+........ . ..+...+. ....++ .+.
T Consensus 16 ~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~-----------~-~~~~~~~~~~e~~l~-~l~ 82 (166)
T TIGR02499 16 QAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEW-----------Q-QEAEQLEASLEERLA-ELV 82 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHHH-HHH
Confidence 479999999999999999999988766554444333322222211111 1 11111111 123333 333
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC-CcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCC
Q psy12089 120 DEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLP 198 (467)
Q Consensus 120 ~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e-~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~ 198 (467)
-.+.+++..-.. .++++..++.+++..+.. +.++|+|+|.|.+.+...+.+... ..| ++|.-|+
T Consensus 83 ~~~~~kil~~~~----~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~----~~~--~~i~~D~----- 147 (166)
T TIGR02499 83 LQALEQILGEYD----EPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLA----LEP--WELEPDA----- 147 (166)
T ss_pred HHHHHHHhCCCC----CHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhc----cCC--eEEeeCC-----
Confidence 333333333222 367777888877777655 589999999999999988775421 112 4444443
Q ss_pred CCCCccEEEEecCCceEE
Q psy12089 199 VDTTGGIELLAQRGKIKI 216 (467)
Q Consensus 199 ~~~~GGvvl~s~dG~I~v 216 (467)
.-..||++|.+.+|.|.+
T Consensus 148 ~l~~G~c~vet~~G~vda 165 (166)
T TIGR02499 148 SLAPGACVLETESGVVDL 165 (166)
T ss_pred CCCCCCEEEEeCCceeeC
Confidence 236799999999998754
No 30
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.66 E-value=1.4e-05 Score=78.51 Aligned_cols=169 Identities=21% Similarity=0.327 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 120 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~ 120 (467)
...+++|+.++.+|...|..+++.++..++.+....+....++...+++.+++.... ..|.++.+-.+.
T Consensus 63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~-----------~l~~ei~~la~~ 131 (246)
T TIGR03321 63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSD-----------ELRRRTGAEVFA 131 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 356778999999999999999999999998888776666555555555544333332 234444444444
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHHH--------------HHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCc
Q psy12089 121 EARKRLGEVTKNRDKYTQLIEKLIIQ--------------GLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE 186 (467)
Q Consensus 121 ~a~e~L~~~~~~~~~Y~~lL~~Li~q--------------~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~ 186 (467)
-|..-|....+. +....++...|.+ ++..-+.+-.+....|=+-.....+ ...+...+|..
T Consensus 132 ~A~kil~~~~d~-~~~~~lid~~i~~l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i----~~~l~~~~~~~ 206 (246)
T TIGR03321 132 IARKVLTDLADT-DLEERMVDVFVQRLRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQI----RDTIRETLGPE 206 (246)
T ss_pred HHHHHHHHhcCh-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHH----HHHHHHHHCCC
Confidence 444444443322 1233333333321 1111122322333334333333333 33444566766
Q ss_pred eeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhc
Q psy12089 187 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 231 (467)
Q Consensus 187 ~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~ 231 (467)
+.++.. .+|+.+|||+|.. |+.++|+|+.++|+.+..++
T Consensus 207 v~~~~~----vdp~ligGi~l~~--g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 207 IRLRFQ----TEPDLIGGIELTA--GGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred eeEEee----eCchhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence 555544 2468999999998 68999999999999887653
No 31
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.62 E-value=2.3e-05 Score=76.28 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=123.1
Q ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHH
Q psy12089 26 IGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQV--ELQKKIQSSNMLNQA 103 (467)
Q Consensus 26 ~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~--e~~k~i~~S~~~~~~ 103 (467)
.+.+++.++.+..+...+...+.+.++.|...+++-|+.-++.=.+.. |+.-..+. ..+-...++.+.+
T Consensus 36 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG-------~~~g~~~~~~~e~~~~li~~~~~-- 106 (234)
T COG1317 36 VLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEG-------FEEGQEEGRVLERLAKLIAEFQA-- 106 (234)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 677778888999999999999999999999999998865433222222 11111110 0111111122111
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCC--cEEEEeccccHHHHHhhHHHHHHHH
Q psy12089 104 RLKAL--KVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEP--NVLIRSREVDKDIVNAVLPNVAKAY 179 (467)
Q Consensus 104 R~~~L--~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~--~vvv~~~~~D~~~v~~~i~~~~~~~ 179 (467)
...-+ ....++++-++.-|++=|...... -++.+..++.+++..+... .+.++|+|+|++++...+++..+.+
T Consensus 107 ~~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~ 183 (234)
T COG1317 107 ELEALKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc
Confidence 11111 245667777777777777776654 3788889999888875443 6999999999999999887543322
Q ss_pred HHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHH
Q psy12089 180 QDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDI 235 (467)
Q Consensus 180 ~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I 235 (467)
+..+.|.-|+ .-.-||+++++.-| .||-|+++||..+...+.|..
T Consensus 184 ----~~~l~l~~D~-----~l~~GgC~IeTe~G--~iDasld~ql~~L~~~~~~~~ 228 (234)
T COG1317 184 ----GWRLELVADP-----ALSPGGCIIETEFG--IIDASLDTQLAALKRALLESL 228 (234)
T ss_pred ----chheeeccCC-----CCCCCCeEEEecCc--cccccHHHHHHHHHHHHHhhh
Confidence 2222333333 22469999999877 578999999999988887764
No 32
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.56 E-value=4.7e-05 Score=74.12 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=124.7
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12089 244 PNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLN 323 (467)
Q Consensus 244 ~~r~~~~d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~ 323 (467)
|+-..+.+++.++.+..+...+...+++.++.|...+++-++. -.+.....=..+...+.+ +.++.+..-...
T Consensus 32 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~ee----g~q~G~~eG~~~g~~~~~---~~e~~~~li~~~ 104 (234)
T COG1317 32 PEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEE----GFQLGYEEGFEEGQEEGR---VLERLAKLIAEF 104 (234)
T ss_pred ccccccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3444677778889999999999999999999999999998876 333333211111111000 011111111111
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCC--ceEEEeccccHHHHHhhHHHHHH
Q psy12089 324 QARLKAL--KVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEP--NVLIRSREVDKDIVNAVLPNVAK 399 (467)
Q Consensus 324 ~aR~~~L--~ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~--~~~I~~~~~D~~~v~~~~~~~~~ 399 (467)
.....-+ .....+++-++.-|++=|...... -++.|..++.+++..+... .++|+|||.|.++++..+++..+
T Consensus 105 ~~~~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~ 181 (234)
T COG1317 105 QAELEALKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELS 181 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHh
Confidence 1111111 245667777777777777776543 3678888888887765543 69999999999999999875533
Q ss_pred HHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHH
Q psy12089 400 AYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDI 457 (467)
Q Consensus 400 ~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I 457 (467)
. .+-...|.-|+ .-.-||+++.+.-| .+|-|+++||..+...+.+..
T Consensus 182 ~----~~~~l~l~~D~-----~l~~GgC~IeTe~G--~iDasld~ql~~L~~~~~~~~ 228 (234)
T COG1317 182 L----LGWRLELVADP-----ALSPGGCIIETEFG--IIDASLDTQLAALKRALLESL 228 (234)
T ss_pred h----cchheeeccCC-----CCCCCCeEEEecCc--cccccHHHHHHHHHHHHHhhh
Confidence 3 22223343333 23569999999877 679999999999888887754
No 33
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.36 E-value=5.3e-05 Score=71.53 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12089 261 MMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNV 340 (467)
Q Consensus 261 m~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v 340 (467)
-...|+.+|+.+|++|+..|+++++. ++......+...+-.+.... ..... ..|..+...-......+
T Consensus 31 ~a~~IL~~A~~qA~~Il~~Ae~eAe~----l~~~a~e~a~~~~~q~a~~l-------l~~~~-~~~e~l~~~l~~~~~~l 98 (191)
T PF06188_consen 31 QAREILEDARQQAEQILQQAEEEAEA----LLEQAYEQAEAQFWQQANAL-------LQEWQ-QQREQLLQQLEEQAEEL 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999986 55555555544443332211 11111 23455555567777888
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCCCCCC
Q psy12089 341 LDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLP 420 (467)
Q Consensus 341 ~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~ 420 (467)
+..+.++|..=..++..+..++++|+... .+.+.++++|+|.+.+-|...+.+- .-...++.-|++ ++
T Consensus 99 l~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~~-------~~~~w~l~~D~s--l~ 166 (191)
T PF06188_consen 99 LSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAEH-------PALHWQLQADES--LA 166 (191)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHhC-------CCcceeeccCCC--CC
Confidence 88888886554444557888888887653 3467899999999999988776542 112356666653 44
Q ss_pred CCCCCcEEEEecCCcEEEec
Q psy12089 421 VDTTGGIELLAQRGKIKISN 440 (467)
Q Consensus 421 ~~~~GGvvl~s~dG~I~vdn 440 (467)
-|..++.+..|...+|.
T Consensus 167 ---~~~l~L~t~~G~~~l~w 183 (191)
T PF06188_consen 167 ---PDQLKLETANGEFRLDW 183 (191)
T ss_pred ---CCceEEEcCCCcEEECH
Confidence 58899999999988874
No 34
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.32 E-value=0.00016 Score=68.35 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 120 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~ 120 (467)
..|+.+|+.+|+.|...|+++++. +++.....+.+.+-.+ ..-...... ..|..+...-.+.+..++.
T Consensus 33 ~~IL~~A~~qA~~Il~~Ae~eAe~----l~~~a~e~a~~~~~q~-------a~~ll~~~~-~~~e~l~~~l~~~~~~ll~ 100 (191)
T PF06188_consen 33 REILEDARQQAEQILQQAEEEAEA----LLEQAYEQAEAQFWQQ-------ANALLQEWQ-QQREQLLQQLEEQAEELLS 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888865 3333322232222211 111112222 2345566666778888899
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCC
Q psy12089 121 EARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVD 200 (467)
Q Consensus 121 ~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~ 200 (467)
.+.++|.+-..++..+..+++.|+.+. .++..++++|+|.+.+-|...+.+- .-...++.-|+ .++
T Consensus 101 ~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~~-------~~~~w~l~~D~--sl~-- 166 (191)
T PF06188_consen 101 QALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAEH-------PALHWQLQADE--SLA-- 166 (191)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHhC-------CCcceeeccCC--CCC--
Confidence 888887666555667888888887543 3567899999999999998877752 11234565554 355
Q ss_pred CCccEEEEecCCceEEec
Q psy12089 201 TTGGIELLAQRGKIKISN 218 (467)
Q Consensus 201 ~~GGvvl~s~dG~I~vdN 218 (467)
.|..++.+..|...+|.
T Consensus 167 -~~~l~L~t~~G~~~l~w 183 (191)
T PF06188_consen 167 -PDQLKLETANGEFRLDW 183 (191)
T ss_pred -CCceEEEcCCCcEEECH
Confidence 48899999999988874
No 35
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.18 E-value=0.00018 Score=70.10 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC--CcEEEEeccccHHHHHhhHHHHHHHHHHHhCCcee
Q psy12089 111 REDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE--PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVN 188 (467)
Q Consensus 111 r~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e--~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~ 188 (467)
++.+++=++.-|+.-+..--.. -++.+..+|.+++..+.. +.++|+|+|.|+.+++..+++. -...+
T Consensus 121 ~~~ll~La~~iA~~vi~~el~~---~p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~--------~~~~~ 189 (236)
T PRK13386 121 RDELLDLVEKVTRQVIRCELTL---QPQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK--------VQAWG 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc--------ccCeE
Confidence 4455555555555555443222 256677999999999854 5899999999999999876541 12345
Q ss_pred EEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccC
Q psy12089 189 LKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGR 242 (467)
Q Consensus 189 i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~ 242 (467)
|..|+. + ..||++|.+.+| .||.|+++||+.+.+. ++..|.+.
T Consensus 190 l~~D~~--l---~~GgC~Iet~~g--~iDa~ietRl~~~~~~----l~~~l~~~ 232 (236)
T PRK13386 190 LVADPS--L---SAGECRIVTDTS--EADAGCEHRLDACMDA----VKEHLLTE 232 (236)
T ss_pred EEeCCC--c---CCCCEEEEeCCc--eEeeCHHHHHHHHHHH----HHHhcccc
Confidence 666643 3 469999999866 6799999999776544 44555543
No 36
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.14 E-value=0.00025 Score=69.15 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcChhHHHHHHHHHHHHHHHhcCC--CceEEEeccccHHHHHhhHHHHHHHHHHHhCCcc
Q psy12089 333 REDHVRNVLDEARKRLGEV-TKNRDKYTQLIEKLIIQGLLQLLE--PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEV 409 (467)
Q Consensus 333 r~e~i~~v~~~a~~~L~~l-~~~~~~Y~~~L~~Li~e~~~~l~~--~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~ 409 (467)
++.+++=++.-|+.-+..- ..+ +..+..++.+++..+.. +.++|+|||.|.+++...+++. -...
T Consensus 121 ~~~ll~La~~iA~~vi~~el~~~----p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~--------~~~~ 188 (236)
T PRK13386 121 RDELLDLVEKVTRQVIRCELTLQ----PQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK--------VQAW 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc--------ccCe
Confidence 4455555555555555443 333 56777999999998854 5799999999999999876542 1235
Q ss_pred eEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccC
Q psy12089 410 NLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463 (467)
Q Consensus 410 ~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg 463 (467)
+|..|+. + .-||++|.+.+| .||.|+++||+.+.+. +...|++
T Consensus 189 ~l~~D~~--l---~~GgC~Iet~~g--~iDa~ietRl~~~~~~----l~~~l~~ 231 (236)
T PRK13386 189 GLVADPS--L---SAGECRIVTDTS--EADAGCEHRLDACMDA----VKEHLLT 231 (236)
T ss_pred EEEeCCC--c---CCCCEEEEeCCc--eEeeCHHHHHHHHHHH----HHHhccc
Confidence 6666652 3 469999999766 7899999999866554 4444544
No 37
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.09 E-value=0.00038 Score=68.24 Aligned_cols=107 Identities=23% Similarity=0.280 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcC--CCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcce
Q psy12089 333 REDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLL--EPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVN 410 (467)
Q Consensus 333 r~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~--~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~ 410 (467)
.+.+++=++.-|+.-+...... -+..+..+|.+++..+. .+.++|+|+|.|.++|+..+.... . ..+..
T Consensus 134 e~~Lv~Lal~ia~~vi~~el~~---~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~~~----~--~~~~~ 204 (246)
T PRK05687 134 ESRLVQLALELARQVIGQELKT---DPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGAEL----S--LHGWR 204 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc---CHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhhHH----H--hCCeE
Confidence 4555665566666655553322 25678888999888864 467999999999999999876321 1 13466
Q ss_pred EEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhH
Q psy12089 411 LKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIP 455 (467)
Q Consensus 411 i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p 455 (467)
|..|+. + .-||++|.+.+|. ||.|+++|++.+.+.+.+
T Consensus 205 l~~D~~--l---~~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~ 242 (246)
T PRK05687 205 LLADPS--L---HRGGCRISAEEGD--VDASLETRWQEVCRLLAP 242 (246)
T ss_pred EEeCCC--c---CCCCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence 776653 3 3699999998886 788999999988887654
No 38
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.07 E-value=0.00038 Score=68.23 Aligned_cols=107 Identities=23% Similarity=0.283 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcC--CCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCcee
Q psy12089 111 REDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLL--EPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVN 188 (467)
Q Consensus 111 r~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~--e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~ 188 (467)
...+++=++.-|+.-+...... -+..+..+|.+++..+. .+.++|+|+|+|+.+|+..+... .. .....
T Consensus 134 e~~Lv~Lal~ia~~vi~~el~~---~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~~---~~---~~~~~ 204 (246)
T PRK05687 134 ESRLVQLALELARQVIGQELKT---DPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGAE---LS---LHGWR 204 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc---CHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhhH---HH---hCCeE
Confidence 4455555555555555553322 25677788999988864 46899999999999999987632 11 22356
Q ss_pred EEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchH
Q psy12089 189 LKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIP 233 (467)
Q Consensus 189 i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp 233 (467)
|..|+. + ..||++|.+.+|. ||.|+++|++.+...+.+
T Consensus 205 l~~D~~--l---~~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~ 242 (246)
T PRK05687 205 LLADPS--L---HRGGCRISAEEGD--VDASLETRWQEVCRLLAP 242 (246)
T ss_pred EEeCCC--c---CCCCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence 666653 3 3699999999886 778999999999887754
No 39
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=98.00 E-value=0.00039 Score=60.63 Aligned_cols=100 Identities=24% Similarity=0.286 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hcChhHHHHHHHHHHHHHH-Hhc-CCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCc
Q psy12089 110 VREDHVRNVLDEARKRLGEV-TKNRDKYTQLIEKLIIQGL-LQL-LEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKE 186 (467)
Q Consensus 110 ar~e~l~~v~~~a~e~L~~~-~~~~~~Y~~lL~~Li~q~~-~~l-~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~ 186 (467)
.++++++=++.-|..-+... ..+ +..+..+|.+++ ..+ ..+.++|+++|+|++.++..+.+... +.+
T Consensus 25 ~~~~l~~l~~~iae~vi~~~l~~~----~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~------~~~ 94 (128)
T PF02108_consen 25 LEQELVELALAIAEKVIGRELEED----PEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELP------ELG 94 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHh------hcC
Confidence 45666666666666666543 333 556677777777 333 34479999999999999988774321 223
Q ss_pred eeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHH
Q psy12089 187 VNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLEL 226 (467)
Q Consensus 187 ~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~ 226 (467)
..+..|+. + ..||++|.+++| .||.|+++||+.
T Consensus 95 ~~l~~D~~--l---~~G~c~iet~~g--~iD~~i~~ql~~ 127 (128)
T PF02108_consen 95 WELVADPS--L---APGDCRIETEDG--IIDASIETQLEA 127 (128)
T ss_pred CEEEecCC--C---CCCCEEEEECCe--eEEeCHHHHHhc
Confidence 36766653 4 469999999866 678999999964
No 40
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=97.97 E-value=0.00044 Score=60.25 Aligned_cols=101 Identities=24% Similarity=0.299 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhcChhHHHHHHHHHHHHHH-Hhc-CCCceEEEeccccHHHHHhhHHHHHHHHHHHhCC
Q psy12089 331 KVREDHVRNVLDEARKRLGE-VTKNRDKYTQLIEKLIIQGL-LQL-LEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGK 407 (467)
Q Consensus 331 ~ar~e~i~~v~~~a~~~L~~-l~~~~~~Y~~~L~~Li~e~~-~~l-~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~ 407 (467)
..++++++=++.-|..-+.. +..+ +..+..+|.+++ ..+ ..+.++|+++|.|.+.+...++.... +.
T Consensus 24 ~~~~~l~~l~~~iae~vi~~~l~~~----~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~------~~ 93 (128)
T PF02108_consen 24 ELEQELVELALAIAEKVIGRELEED----PEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELP------EL 93 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHh------hc
Confidence 34666666666666666654 3333 456667777777 333 24469999999999999988764322 22
Q ss_pred cceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHH
Q psy12089 408 EVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLEL 448 (467)
Q Consensus 408 ~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~ 448 (467)
+..|..|+. + .-||++|.+++| .+|.|+++||+.
T Consensus 94 ~~~l~~D~~--l---~~G~c~iet~~g--~iD~~i~~ql~~ 127 (128)
T PF02108_consen 94 GWELVADPS--L---APGDCRIETEDG--IIDASIETQLEA 127 (128)
T ss_pred CCEEEecCC--C---CCCCEEEEECCe--eEEeCHHHHHhc
Confidence 347777753 3 469999999766 678999999974
No 41
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=97.81 E-value=0.0061 Score=59.99 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 121 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~ 121 (467)
.-+++|+.++.+|...|..+++.++.+++.+.+..+....++...+++.+++.. .-..+.++.+-++.-
T Consensus 64 ~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a-----------~~~L~~~v~~la~~~ 132 (250)
T PRK14474 64 QKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEF-----------FKALQQQTGQQMVKI 132 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 356688999999999999999999999988887666555555444444443333 223455566666666
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHhc-------------CCCcEEEEec----cccHHHHHhhHHHHHHHHHH-Hh
Q psy12089 122 ARKRLGEVTKNRDKYTQLIEKLIIQGLLQL-------------LEPNVLIRSR----EVDKDIVNAVLPNVAKAYQD-VA 183 (467)
Q Consensus 122 a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l-------------~e~~vvv~~~----~~D~~~v~~~i~~~~~~~~~-~~ 183 (467)
|.+-|....+. +....++..+|. .+..+ +++.++|+.. |.+...+... +.. ..
T Consensus 133 A~kiL~~~~d~-~~~~~lid~~i~-~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~-------l~~~~~ 203 (250)
T PRK14474 133 IRAALADLANA-TLEQQIVGIFIA-RLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILES-------LHQTHL 203 (250)
T ss_pred HHHHHHhhcCH-HHHHHHHHHHHH-HhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHH-------HHHHhc
Confidence 66666665543 234455555442 12222 1222444431 2223333333 334 45
Q ss_pred CCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhc
Q psy12089 184 GKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 231 (467)
Q Consensus 184 g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~ 231 (467)
|.++.+.+.. +|+.++|+.|..+ +-.|.|||++.|+.+-..+
T Consensus 204 ~~~~~~~f~~----~p~li~Giel~~~--~~~i~ws~~~yl~~l~~~~ 245 (250)
T PRK14474 204 IPGTDIHFVT----SPELICGIELKTE--GYKIAWTLAEYLDALESQL 245 (250)
T ss_pred CCCCceeeec----CcccccCeEEecC--CceEeccHHHHHHHHHHHH
Confidence 6666666654 3578999999984 7889999999997775544
No 42
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=97.78 E-value=0.0089 Score=58.86 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 342 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~ 342 (467)
..-+++|+.++.+|...|..+++.++..++.+.+..+....++.. +....+.....-..+.++.+-++.
T Consensus 63 e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~-----------~~ie~Ek~~a~~~L~~~v~~la~~ 131 (250)
T PRK14474 63 RQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWL-----------EQLEREKQEFFKALQQQTGQQMVK 131 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888777766655543333222 222233333334456667777777
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHHHHHHhc-------------CCCceEEEe----ccccHHHHHhhHHHHHHHHHH-H
Q psy12089 343 EARKRLGEVTKNRDKYTQLIEKLIIQGLLQL-------------LEPNVLIRS----REVDKDIVNAVLPNVAKAYQD-V 404 (467)
Q Consensus 343 ~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l-------------~~~~~~I~~----~~~D~~~v~~~~~~~~~~~~~-~ 404 (467)
-|..-|...... .....++..+|.+ +..+ +++.++|+. .|.+...+...+. . .
T Consensus 132 ~A~kiL~~~~d~-~~~~~lid~~i~~-l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~-------~~~ 202 (250)
T PRK14474 132 IIRAALADLANA-TLEQQIVGIFIAR-LEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLH-------QTH 202 (250)
T ss_pred HHHHHHHhhcCH-HHHHHHHHHHHHH-hcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHH-------HHh
Confidence 777777776543 2455555555533 2111 222344443 2344444444443 3 4
Q ss_pred hCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhh
Q psy12089 405 AGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 453 (467)
Q Consensus 405 ~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~ 453 (467)
.|.++.+.+.. .++.++|+.|.. |+-.+.+|+++.|+.+...+
T Consensus 203 ~~~~~~~~f~~----~p~li~Giel~~--~~~~i~ws~~~yl~~l~~~~ 245 (250)
T PRK14474 203 LIPGTDIHFVT----SPELICGIELKT--EGYKIAWTLAEYLDALESQL 245 (250)
T ss_pred cCCCCceeeec----CcccccCeEEec--CCceEeccHHHHHHHHHHHH
Confidence 66666666653 458999999999 78999999999998775544
No 43
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=97.72 E-value=0.00067 Score=62.73 Aligned_cols=91 Identities=21% Similarity=0.162 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12089 258 IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHV 337 (467)
Q Consensus 258 l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i 337 (467)
+..-...++.+|+.+|.+|+..|..+++.++..++.+...... .......+....+.+..+...|++++
T Consensus 75 ~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~-----------~~~~~a~~~ie~Ek~~a~~elk~eii 143 (167)
T PRK08475 75 KKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIE-----------NLIKSFEELMEFEVRKMEREVVEEVL 143 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888888888888888877766655553332 11122356777888889999999999
Q ss_pred HHHHHHHHHHHhhhhcChhHHHHHHHH
Q psy12089 338 RNVLDEARKRLGEVTKNRDKYTQLIEK 364 (467)
Q Consensus 338 ~~v~~~a~~~L~~l~~~~~~Y~~~L~~ 364 (467)
+++|+. +|.+++.+ .|.+++.+
T Consensus 144 ~~~~~~---~~~~l~~~--~y~~~~~~ 165 (167)
T PRK08475 144 NELFES---KKVSLNQQ--EYVNILLK 165 (167)
T ss_pred HHHHHh---hhcCCCHH--HHHHHHhc
Confidence 999999 99999876 79999865
No 44
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=97.69 E-value=0.0019 Score=59.63 Aligned_cols=91 Identities=22% Similarity=0.182 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12089 36 IKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHV 115 (467)
Q Consensus 36 i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l 115 (467)
+..=-..++.+|+.++.+|...|..+++.++.+++.+..... +.......+....+.+..+...|++++
T Consensus 75 ~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea-----------~~~~~~a~~~ie~Ek~~a~~elk~eii 143 (167)
T PRK08475 75 KKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDI-----------ENLIKSFEELMEFEVRKMEREVVEEVL 143 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445688899999999999999999999888887765433 333344566677778888899999999
Q ss_pred HHHHHHHHHHHhhhhcChhHHHHHHHH
Q psy12089 116 RNVLDEARKRLGEVTKNRDKYTQLIEK 142 (467)
Q Consensus 116 ~~v~~~a~e~L~~~~~~~~~Y~~lL~~ 142 (467)
+++|+. +|.+++.+ .|.+++.+
T Consensus 144 ~~~~~~---~~~~l~~~--~y~~~~~~ 165 (167)
T PRK08475 144 NELFES---KKVSLNQQ--EYVNILLK 165 (167)
T ss_pred HHHHHh---hhcCCCHH--HHHHHHhc
Confidence 999999 99998876 79998764
No 45
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=97.57 E-value=0.013 Score=55.44 Aligned_cols=164 Identities=22% Similarity=0.319 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQ--VELQKKIQSSNMLNQARLKALKVREDHVRNV 340 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~--~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v 340 (467)
..+...|+..|..|...|+..|+.++.+ -|+.-..+ .++-+.+..+.+.-..++..| .+++.+=|
T Consensus 33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rar-----------GyeeG~~~g~e~~A~llaqa~a~v~r~~a~L--E~~l~~LV 99 (207)
T PF06635_consen 33 AAFLAAARREAQRIREWARAAYERERAR-----------GYEEGRRAGAEQAARLLAQATAEVARYLAGL--EQELAELV 99 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3567889999999999999999976553 23333222 333445555556666666666 57788888
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCC-ceEEEeccccHHHHHhhHHHHHHHHHHHhCC-cceEEecCCCC
Q psy12089 341 LDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEP-NVLIRSREVDKDIVNAVLPNVAKAYQDVAGK-EVNLKLDNDQF 418 (467)
Q Consensus 341 ~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~-~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~-~~~i~i~~~~~ 418 (467)
++-++.-|..|..+ +++.+.+.+++..+-.+ .++|+++|.|.+.+...|..+ ..+ .|. .+.|..|+ .
T Consensus 100 l~~Vr~ILg~fd~~-----ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~-~~~---~g~~~i~I~aDp--~ 168 (207)
T PF06635_consen 100 LEIVRKILGEFDPD-----ELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAAL-EGR---PGRPKIRIVADP--R 168 (207)
T ss_pred HHHHHHHHhcCChH-----HHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhh-hcc---CCCCceeeecCC--C
Confidence 88888888888654 56667776766665544 699999999999999888654 111 232 34454443 2
Q ss_pred CCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhH
Q psy12089 419 LPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIP 455 (467)
Q Consensus 419 ~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p 455 (467)
+ ..|..||.|.-| .||-+|++-|+.++..+.|
T Consensus 169 L---a~~~Cvlese~G--~VdagL~aQL~ALr~a~~~ 200 (207)
T PF06635_consen 169 L---AAGQCVLESEFG--VVDAGLDAQLRALRLAFGP 200 (207)
T ss_pred C---CCCCeeeecccc--hhhccHHHHHHHHHHHhcc
Confidence 3 468899999888 5688999999888777665
No 46
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=97.47 E-value=0.041 Score=52.29 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEe
Q psy12089 139 LIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKIS 217 (467)
Q Consensus 139 lL~~Li~q~~~~l~e-~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vd 217 (467)
.+..++.+++..+.+ +.++|+|+|.|.+.++..+++.. ...|....+.|-.+..++ .||++|...+|+| +
T Consensus 112 ~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~----~~~~~~~~~~l~~D~~L~---~G~c~vet~~G~v--d 182 (199)
T PRK06032 112 EITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLA----RESGFEGRLVVLADPDMA---PGDCRLEWADGGV--V 182 (199)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHH----HhcCcCccEEEeeCCCCC---CCCeEEEeCCCeE--e
Confidence 466677777666544 56999999999999998877653 344655555554443344 6999999998865 5
Q ss_pred ccHHHHHHHHHHh
Q psy12089 218 NTLEARLELIAQQ 230 (467)
Q Consensus 218 NTle~RL~~~~~~ 230 (467)
+|++++..++.+-
T Consensus 183 ~d~~~~~~~I~~a 195 (199)
T PRK06032 183 RDRAAIEARIEEA 195 (199)
T ss_pred cCHHHHHHHHHHH
Confidence 6677776655543
No 47
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=97.44 E-value=0.027 Score=53.27 Aligned_cols=164 Identities=21% Similarity=0.288 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQ--KKIQSSNMLNQARLKALKVREDHVRNVL 119 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~--k~i~~S~~~~~~R~~~L~ar~e~l~~v~ 119 (467)
.++..|+..|..|+..|+..|+.++.+=-+.. +.+...+ +.+..+...-..++..| .+++.+=|+
T Consensus 34 ~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG-----------~~~g~e~~A~llaqa~a~v~r~~a~L--E~~l~~LVl 100 (207)
T PF06635_consen 34 AFLAAARREAQRIREWARAAYERERARGYEEG-----------RRAGAEQAARLLAQATAEVARYLAGL--EQELAELVL 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 46788999999999999999988776443322 2222222 22333444444555555 577777777
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCC-cEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCC
Q psy12089 120 DEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEP-NVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLP 198 (467)
Q Consensus 120 ~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~-~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~ 198 (467)
+-+.+-|..|.. .++|...+.+++..+..+ .+.|++.|.|.+.+...+..+ ....|.+ .|.|..+--|+
T Consensus 101 ~~Vr~ILg~fd~-----~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~----~~~~g~~-~i~I~aDp~La 170 (207)
T PF06635_consen 101 EIVRKILGEFDP-----DELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAAL----EGRPGRP-KIRIVADPRLA 170 (207)
T ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhh----hccCCCC-ceeeecCCCCC
Confidence 777777888765 467777777777776555 799999999999998877654 2222322 45554432343
Q ss_pred CCCCccEEEEecCCceEEeccHHHHHHHHHHhchH
Q psy12089 199 VDTTGGIELLAQRGKIKISNTLEARLELIAQQIIP 233 (467)
Q Consensus 199 ~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp 233 (467)
-|..+|.|.-| .||-+|++-|+-+..-+.|
T Consensus 171 ---~~~Cvlese~G--~VdagL~aQL~ALr~a~~~ 200 (207)
T PF06635_consen 171 ---AGQCVLESEFG--VVDAGLDAQLRALRLAFGP 200 (207)
T ss_pred ---CCCeeeecccc--hhhccHHHHHHHHHHHhcc
Confidence 58899999977 5678999998887776665
No 48
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=97.41 E-value=0.26 Score=52.60 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 119 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~ 119 (467)
-..++++|+.++.+|...|.++++..+.+++.+....+....+.-..+++.+ ....+-..|.++.+-.+
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~e-----------k~~a~~elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLL-----------RAQLTRQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999998888887766544433333323333322 22222344677778888
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCc
Q psy12089 120 DEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPN 155 (467)
Q Consensus 120 ~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~ 155 (467)
..|.+-|.+--.+++....++...|. .+..++++.
T Consensus 127 ~~A~kil~~~l~d~~~~~~lId~~i~-~l~~~~~~~ 161 (445)
T PRK13428 127 RQAGELVRNHVADPAQQSATVDRFLD-ELDAMAPST 161 (445)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccCCCc
Confidence 88888887533233335667666664 344454443
No 49
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=97.40 E-value=0.055 Score=51.40 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHhhHHHHHHHHHHHhCCcce
Q psy12089 333 REDHVRNVLDEARKRLGEV-TKNRDKYTQLIEKLIIQGLLQLLE-PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVN 410 (467)
Q Consensus 333 r~e~i~~v~~~a~~~L~~l-~~~~~~Y~~~L~~Li~e~~~~l~~-~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~ 410 (467)
++++++=++.-|+.-+... ..+| ...+..++.+++..+.+ +.++|+|+|.|.+.+...++.. ...+|..+.
T Consensus 86 ~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~----~~~~~~~~~ 158 (199)
T PRK06032 86 ETEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERL----ARESGFEGR 158 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHH----HHhcCcCcc
Confidence 3344444444444444443 3332 12466666666666555 4599999999999999887665 344566656
Q ss_pred EEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHh
Q psy12089 411 LKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQ 452 (467)
Q Consensus 411 i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~ 452 (467)
+.|-.+ |.=.-||++|...+|+ +|+|++++..++.+.
T Consensus 159 ~~l~~D---~~L~~G~c~vet~~G~--vd~d~~~~~~~I~~a 195 (199)
T PRK06032 159 LVVLAD---PDMAPGDCRLEWADGG--VVRDRAAIEARIEEA 195 (199)
T ss_pred EEEeeC---CCCCCCCeEEEeCCCe--EecCHHHHHHHHHHH
Confidence 655542 2335799999998885 566677776655544
No 50
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=96.61 E-value=0.026 Score=52.66 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhh
Q psy12089 398 AKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 454 (467)
Q Consensus 398 ~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~ 454 (467)
.+.+...+|..+.++.. ..++++|||++.. |.-++|.|+-++|+.+...+.
T Consensus 128 ~~~l~~~~g~~v~l~~~----vDpslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 128 ESKLSKKLNKKVHLVNK----IDPKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred HHHHHHHHCCeEEEEee----cCHHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence 44445667875554433 3458999999999 899999999999999887664
No 51
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=96.24 E-value=0.064 Score=50.07 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhch
Q psy12089 170 AVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 232 (467)
Q Consensus 170 ~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~l 232 (467)
+.+..+.+.+...+|..+.++.. .+|+++||+++.- |.-++|.|+-++|+.+...+.
T Consensus 122 ~~~~~i~~~l~~~~g~~v~l~~~----vDpslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 122 VQISRFESKLSKKLNKKVHLVNK----IDPKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred HHHHHHHHHHHHHHCCeEEEEee----cCHHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence 33444455566677876554433 3468999999998 589999999999999887764
No 52
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=95.98 E-value=0.13 Score=48.15 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhh
Q psy12089 395 PNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 454 (467)
Q Consensus 395 ~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~ 454 (467)
......+.+.+|+++.++.. ..++++|||++.- |.-++|.|+-++|+++...+.
T Consensus 121 ~~l~~~L~k~~g~~v~l~~~----vDpsLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~ 174 (184)
T PRK13434 121 DKLGSILSEKFKSEFILEVS----EDKNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML 174 (184)
T ss_pred HHHHHHHHHHHCCEeEEEee----eChHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 33344455667875554433 3457999999999 899999999999999988874
No 53
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=95.95 E-value=0.11 Score=51.74 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=38.8
Q ss_pred HHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhh
Q psy12089 398 AKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 453 (467)
Q Consensus 398 ~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~ 453 (467)
...+.+.+|+++.++.. ..++++|||+|.- |.-++|+|+.++|+.+...+
T Consensus 220 ~~~L~k~~g~~V~l~~~----VDpsLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L 269 (271)
T PRK13430 220 AAALSRIYGRPVHLNSE----VDPSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL 269 (271)
T ss_pred HHHHHHHHCCceEEEee----ECccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence 33445667876655443 3458999999999 89999999999999988765
No 54
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=95.91 E-value=0.12 Score=51.54 Aligned_cols=86 Identities=15% Similarity=0.250 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEE-eccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCce
Q psy12089 136 YTQLIEKLIIQGLLQLLEPNVLIR-SREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKI 214 (467)
Q Consensus 136 Y~~lL~~Li~q~~~~l~e~~vvv~-~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I 214 (467)
+..++..+.......-+.-.+.|. ..|=+ +.-...+...+.+.+|.++.++.. .+|+++|||+|.- |.-
T Consensus 183 l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs----~~q~~~L~~~L~k~~g~~V~l~~~----VDpsLIGGivI~v--Gd~ 252 (271)
T PRK13430 183 IEEGLDELSNLAAARRGRSVATVTTAVPLS----DEQKQRLAAALSRIYGRPVHLNSE----VDPSVLGGMRVQV--GDE 252 (271)
T ss_pred HHHHHHHHHHHHHHHcCeeEEEEEecCCCC----HHHHHHHHHHHHHHHCCceEEEee----ECccccCcEEEEE--CCE
Confidence 445555555544444333333332 23333 333444455556677876655543 2468999999998 589
Q ss_pred EEeccHHHHHHHHHHhc
Q psy12089 215 KISNTLEARLELIAQQI 231 (467)
Q Consensus 215 ~vdNTle~RL~~~~~~~ 231 (467)
++|+|+.+||+.+...+
T Consensus 253 viD~Sv~~rL~~L~~~L 269 (271)
T PRK13430 253 VIDGSVAGRLERLRRRL 269 (271)
T ss_pred EEehhHHHHHHHHHHHh
Confidence 99999999999988765
No 55
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=95.49 E-value=0.24 Score=46.39 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhch
Q psy12089 169 NAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 232 (467)
Q Consensus 169 ~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~l 232 (467)
++....+.+.+.+.+|..+.++.. .+|+++|||++.- |.-++|.|+-+||+++...+.
T Consensus 117 ~~q~~~l~~~L~k~~g~~v~l~~~----vDpsLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~ 174 (184)
T PRK13434 117 PAQVDKLGSILSEKFKSEFILEVS----EDKNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML 174 (184)
T ss_pred HHHHHHHHHHHHHHHCCEeEEEee----eChHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 334444455566677876555443 3468999999998 589999999999999998874
No 56
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=95.09 E-value=1.7 Score=40.32 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=38.3
Q ss_pred HhchHHHHHHhccCCCCcccccc--hhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12089 229 QQIIPDIRVAIFGRNPNLMALSD--ADVQKQIKHM-------------MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQ 293 (467)
Q Consensus 229 ~~~lp~I~~~LF~~~~~r~~~~d--~~~~~~l~km-------------~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~ 293 (467)
--++.-+.+.+||+ -..+|+. ..+...++.. -+..+.+|+.+|.+|...|.++++..+..++.
T Consensus 29 lil~~lL~~~l~kp--i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~ 106 (175)
T PRK14472 29 VIVLLILKKIAWGP--ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITE 106 (175)
T ss_pred HHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777774 4444443 3333333322 34566677777777777777777766665554
Q ss_pred HHH
Q psy12089 294 HQR 296 (467)
Q Consensus 294 ~e~ 296 (467)
+..
T Consensus 107 ~A~ 109 (175)
T PRK14472 107 KAH 109 (175)
T ss_pred HHH
Confidence 444
No 57
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=94.87 E-value=0.26 Score=46.05 Aligned_cols=112 Identities=15% Similarity=0.259 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHH-HHHhh----hhcChhHHHHHHHHHHHHHHHhcC--CC--ceEEEeccccHHHHHhhHHHHHHHH
Q psy12089 331 KVREDHVRNVLDEAR-KRLGE----VTKNRDKYTQLIEKLIIQGLLQLL--EP--NVLIRSREVDKDIVNAVLPNVAKAY 401 (467)
Q Consensus 331 ~ar~e~i~~v~~~a~-~~L~~----l~~~~~~Y~~~L~~Li~e~~~~l~--~~--~~~I~~~~~D~~~v~~~~~~~~~~~ 401 (467)
+.|.+++..++...- ..+.+ +..+ .+..+|...+.+...... .+ .+.|+.-. ++-+.-+.......
T Consensus 57 ~~k~~li~~i~~~~~~~~~~nfL~ll~en--~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~---~Ls~~q~~~l~~~l 131 (178)
T COG0712 57 EDKKELLISIFKKIGDPLLQNFLRLLAEN--KRLNLLPEILEEFLKLAAESRGIVEAEVTSAF---ELSDEQLTKLEAKL 131 (178)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHc--cchhhHHHHHHHHHHHHHHhcCceEEEEEEcC---CCCHHHHHHHHHHH
Confidence 445566677766655 33333 2333 355555555555332211 22 34444321 23333444444455
Q ss_pred HHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhh
Q psy12089 402 QDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 453 (467)
Q Consensus 402 ~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~ 453 (467)
...+|+++++... ..++++||+++.. |.-++|.|+.++|.++...+
T Consensus 132 ~k~~~~~v~i~~~----VD~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l 177 (178)
T COG0712 132 EKKFGKKVKLNNK----IDPSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL 177 (178)
T ss_pred HHHhCCCceEEee----eCHHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence 6667776555443 3457999999999 89999999999999887654
No 58
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=94.84 E-value=0.35 Score=45.07 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=37.0
Q ss_pred HHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhh
Q psy12089 400 AYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 454 (467)
Q Consensus 400 ~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~ 454 (467)
.+.+.+|..+.+... ..++++|||++.. |.-++|.|+-++|+.+...++
T Consensus 129 ~l~k~~~~~v~l~~~----vD~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 129 FVRKYVLRDPVFEET----IDESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred HHHHHHCCcceEEee----eChHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence 334556765554432 3457999999999 789999999999999888774
No 59
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=94.80 E-value=1.2 Score=37.87 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12089 43 IEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVRED 113 (467)
Q Consensus 43 I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e 113 (467)
++.+|+.++..|...|..+++..+..++.+.......-.+.-..+++..+..+++.+..+...-.+.+++.
T Consensus 18 ~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k 88 (103)
T PRK08404 18 RIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEEN 88 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444444444443333333333334445444445555555555444444443
No 60
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=94.36 E-value=2.7 Score=39.26 Aligned_cols=78 Identities=18% Similarity=0.050 Sum_probs=40.9
Q ss_pred CceEEeccHHHHHHHHHHhchHHHHHHhccCCCCcccccc--hhHHHHHHHHHH-------------HHHHHHHHHHHHH
Q psy12089 212 GKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSD--ADVQKQIKHMMA-------------FIEQEANEKAEEI 276 (467)
Q Consensus 212 G~I~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r~~~~d--~~~~~~l~km~~-------------~I~~EA~ekA~eI 276 (467)
|-+.+|||+=-.+ ..+--++.-+...+||+ |-+.+|+. ..+...|+..-. .-+++|+.++.+|
T Consensus 21 ~~~~~~~t~~~~~-inflil~~iL~~f~~~~-~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~I 98 (184)
T PRK13455 21 PFFSLSNTDFVVT-LAFLLFIGILVYFKVPG-MIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRI 98 (184)
T ss_pred CCCCCcchHHHHH-HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677766433 33444444455555553 43445543 445544443322 2556666666666
Q ss_pred HHHHHHHHHHHHhHH
Q psy12089 277 DAKAEEEFNIEKGRL 291 (467)
Q Consensus 277 ~~~A~eea~~ek~~i 291 (467)
+..|.++++..+.++
T Consensus 99 i~~A~~~a~~~~e~~ 113 (184)
T PRK13455 99 VAAAKDEAQAAAEQA 113 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666544333
No 61
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=94.22 E-value=0.42 Score=44.63 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=42.8
Q ss_pred HHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhc
Q psy12089 167 IVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 231 (467)
Q Consensus 167 ~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~ 231 (467)
+-+.-+..+.......+|.++++...- +++.+||+++.. |.-++|.|+.++|.++...+
T Consensus 119 Ls~~q~~~l~~~l~k~~~~~v~i~~~V----D~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l 177 (178)
T COG0712 119 LSDEQLTKLEAKLEKKFGKKVKLNNKI----DPSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL 177 (178)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEeee----CHHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence 344445555556666777766555442 358999999998 58999999999999887654
No 62
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=94.05 E-value=2.9 Score=38.70 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=67.3
Q ss_pred HHhchHHHHHHhccCCCCcccccc--hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12089 228 AQQIIPDIRVAIFGRNPNLMALSD--ADVQKQIKHMM-------------AFIEQEANEKAEEIDAKAEEEFNIEKGRLV 292 (467)
Q Consensus 228 ~~~~lp~I~~~LF~~~~~r~~~~d--~~~~~~l~km~-------------~~I~~EA~ekA~eI~~~A~eea~~ek~~iv 292 (467)
+--++.-+.+.+|+ |-+.+|+. ..+...++..- ...+++|+.++.+|+..|.++++..+..++
T Consensus 26 Flil~~iL~~~~~k--pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~ 103 (173)
T PRK13460 26 FLVVVLVLKKFAWD--VILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLL 103 (173)
T ss_pred HHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777776 34444443 44444443332 345777888888888888888887666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHH
Q psy12089 293 QHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQ 368 (467)
Q Consensus 293 ~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e 368 (467)
......+....+... .....+....+-.-|.++.+-.++-|..-|.+-.. ++....++.+.|.+
T Consensus 104 ~~A~~ea~~~~~~a~-----------~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~-~~~~~~lid~~i~~ 167 (173)
T PRK13460 104 EETNNEVKAQKDQAV-----------KEIELAKGKALSQLQNQIVEMTITIASKVLEKQLK-KEDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
Confidence 555433322211111 11111112222244566666666666666666442 23455555555543
No 63
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=93.96 E-value=3.2 Score=38.76 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=72.8
Q ss_pred chHHHHHHhccCCCCcccccc--hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12089 231 IIPDIRVAIFGRNPNLMALSD--ADVQKQIKHMM-------------AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQ 295 (467)
Q Consensus 231 ~lp~I~~~LF~~~~~r~~~~d--~~~~~~l~km~-------------~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e 295 (467)
++--+.+.||+ |-..++.. ..+...++..- ...+++|+.++.+|+..|..+++.++..++.+.
T Consensus 37 ll~lL~~fl~k--PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A 114 (184)
T CHL00019 37 VLGVLIYFGKG--VLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQA 114 (184)
T ss_pred HHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666665 44444443 33444333332 567888888899999999998888777776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHH
Q psy12089 296 RLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQ 368 (467)
Q Consensus 296 ~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e 368 (467)
...+...... +.+....+.+...-..+.++.+-+++-|..-|.+.. +++....++...|.+
T Consensus 115 ~~ea~~~~~~-----------a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~l-d~~~~~~lid~~i~~ 175 (184)
T CHL00019 115 KEDLERLENY-----------KNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCL-NNELHLRTINANIGL 175 (184)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc-CHHHHHHHHHHHHHH
Confidence 5444322211 112233333334445677778888888888887755 333456666665554
No 64
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=93.90 E-value=3.5 Score=37.70 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=32.7
Q ss_pred hHHHHHHhccCCCCcccccc--hhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12089 232 IPDIRVAIFGRNPNLMALSD--ADVQKQIKHM-------------MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQ 293 (467)
Q Consensus 232 lp~I~~~LF~~~~~r~~~~d--~~~~~~l~km-------------~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~ 293 (467)
+--+.+.+|+ |-..+|+. ..+...++.. .+..+.+|+.++.+|+..|.++++..+..++.
T Consensus 22 ~~ll~~~l~~--pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~ 96 (164)
T PRK14471 22 LLLLAKFAWK--PILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKE 96 (164)
T ss_pred HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666 44445543 3444444332 23356677777777777777776654444433
No 65
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=93.52 E-value=0.71 Score=37.63 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=42.2
Q ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12089 19 IEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDR 83 (467)
Q Consensus 19 ~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~ 83 (467)
.++-+..++.++..+.+ .|+.+|...|+.+...+..++..+..+++...+..|..+..+
T Consensus 7 ae~~~~~~l~~A~~ea~------~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~ 65 (85)
T TIGR02926 7 AEEDAEELIEEAEEERK------QRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEK 65 (85)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777 788888888888888888888877777777776655444433
No 66
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=93.52 E-value=1.3 Score=41.33 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhch
Q psy12089 172 LPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 232 (467)
Q Consensus 172 i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~l 232 (467)
+..+.+.+.+.+|..+.+... .+|+++||+++.- |.-++|.|+-++|..+...++
T Consensus 123 ~~~i~~~l~k~~~~~v~l~~~----vD~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 123 LKLLRKFVRKYVLRDPVFEET----IDESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred HHHHHHHHHHHHCCcceEEee----eChHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence 333344455566765554433 2357999999998 578999999999999988875
No 67
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=93.49 E-value=6.3 Score=36.45 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 121 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~ 121 (467)
..+++|+.++.+|...|..+++.++..++.+....+....+.....++. +.....-..+.++.+-+..-
T Consensus 78 ~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~-----------e~~~a~~~l~~qi~~la~~~ 146 (174)
T PRK07352 78 QKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSA-----------EQERVIAQLRREAAELAIAK 146 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999888888776655444333332222222 22222334567777777888
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHH
Q psy12089 122 ARKRLGEVTKNRDKYTQLIEKLII 145 (467)
Q Consensus 122 a~e~L~~~~~~~~~Y~~lL~~Li~ 145 (467)
|...|..--++ +....++..+|.
T Consensus 147 A~kil~~~l~~-~~~~~li~~~i~ 169 (174)
T PRK07352 147 AESQLPGRLDE-DAQQRLIDRSIA 169 (174)
T ss_pred HHHHHHhHcCH-HHHHHHHHHHHH
Confidence 88777765433 245555555554
No 68
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=93.27 E-value=3.3 Score=35.41 Aligned_cols=40 Identities=33% Similarity=0.256 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYY 81 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~ 81 (467)
-|..+|.++|.+|..+|+.++...+..+++.....+..+.
T Consensus 32 ~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea 71 (108)
T COG2811 32 QIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEA 71 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999998888888777655444433
No 69
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=92.72 E-value=2.3 Score=39.36 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=34.3
Q ss_pred HHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhh
Q psy12089 402 QDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 453 (467)
Q Consensus 402 ~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~ 453 (467)
...+|..+.+... .+++.+||+++.. |+-.+|+|+.++|+.....+
T Consensus 130 ~~~~~~~v~l~~~----vd~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l 175 (177)
T PRK05758 130 EKRLGRKVKLNEK----VDPSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL 175 (177)
T ss_pred HHHHCCeeEEEee----EChHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence 4456665443322 2457899999999 78999999999999887765
No 70
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=92.55 E-value=5.9 Score=33.60 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRL 297 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~ 297 (467)
-..++++|+.++.+|+..|..+++.....++.+...
T Consensus 15 ~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~ 50 (103)
T PRK08404 15 AEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEE 50 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777766666655553
No 71
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=92.43 E-value=2.3 Score=39.24 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=33.7
Q ss_pred HHHHhCC-cceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHh
Q psy12089 401 YQDVAGK-EVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQ 452 (467)
Q Consensus 401 ~~~~~g~-~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~ 452 (467)
+...+|. ++++... ..++.+||+++.. |+-.+|.|+.++|+.+...
T Consensus 125 l~~~~~~~~v~~~~~----vd~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~ 171 (172)
T TIGR01145 125 LEKITGAAKVKLNCK----VDKDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ 171 (172)
T ss_pred HHHHhCCCeEEEEEe----ECHHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence 3445665 5544432 2347899999999 7899999999999887654
No 72
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=92.38 E-value=6 Score=36.60 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=38.0
Q ss_pred hchHHHHHHhccCCCCcccccc--hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12089 230 QIIPDIRVAIFGRNPNLMALSD--ADVQKQIKHMM-------------AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQH 294 (467)
Q Consensus 230 ~~lp~I~~~LF~~~~~r~~~~d--~~~~~~l~km~-------------~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~ 294 (467)
-++--+.+.+|+ |-..+|+. ..+...++..- +..+.+|+.++.+|+..|..+++..+..++.+
T Consensus 30 iL~~lL~~~l~~--pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~ 107 (173)
T PRK13453 30 VLLALLKKFAWG--PLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHE 107 (173)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666 44444443 44444444332 35667777777777777777777666655554
Q ss_pred HHH
Q psy12089 295 QRL 297 (467)
Q Consensus 295 e~~ 297 (467)
...
T Consensus 108 A~~ 110 (173)
T PRK13453 108 ANV 110 (173)
T ss_pred HHH
Confidence 443
No 73
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=92.08 E-value=8.4 Score=35.57 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 342 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~ 342 (467)
...+++|+.++.+|+..|..+++..+..++.+....+....+.. ......+.....-..+.++.+-+++
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a-----------~~~i~~e~~~a~~~l~~qi~~la~~ 145 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTA-----------AADLSAEQERVIAQLRREAAELAIA 145 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888766666655444332222111 1222222333344557777888888
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHH
Q psy12089 343 EARKRLGEVTKNRDKYTQLIEKLII 367 (467)
Q Consensus 343 ~a~~~L~~l~~~~~~Y~~~L~~Li~ 367 (467)
-|...|..--.+ .....++.+.|.
T Consensus 146 ~A~kil~~~l~~-~~~~~li~~~i~ 169 (174)
T PRK07352 146 KAESQLPGRLDE-DAQQRLIDRSIA 169 (174)
T ss_pred HHHHHHHhHcCH-HHHHHHHHHHHH
Confidence 888877774432 245555555554
No 74
>PRK15322 invasion protein OrgB; Provisional
Probab=91.65 E-value=12 Score=35.43 Aligned_cols=141 Identities=14% Similarity=0.106 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 119 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~ 119 (467)
..-|.+.|+.+|.+|...|+.|++.-...- -.+-|..-+.++-.. ...-. ++.+.| +.++..+|-
T Consensus 14 a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A-------~~~GYq~Gl~qa~~~----la~~~--a~~~~l--~~~l~~~ie 78 (210)
T PRK15322 14 AERLEQQARRRAKRILRQAEEEAETLRMYA-------YQEGYEQGMIDALQQ----VAAYL--TDNQTM--AWKWMEKIQ 78 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHH--HHHHHH--HHHHHHHHH
Confidence 346899999999999999999997654432 234565444433321 11111 111112 346777777
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCC--CcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCC
Q psy12089 120 DEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLE--PNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFL 197 (467)
Q Consensus 120 ~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e--~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l 197 (467)
+.++.-|...-.+|+ +|-.++.+=+..+.. ..+.|++ |.|..-.. +.+...+.+.+|..+.|+..++
T Consensus 79 ~~~r~lls~~Ld~pd----~LL~~le~Wl~~l~~~~~pL~l~l-P~~ak~~~---~~L~~~l~e~w~~~~~i~yhd~--- 147 (210)
T PRK15322 79 IYARELFSAAVDHPE----TLLTVLDEWLRDFDKPEGQLFLTL-PVNAKKDH---QKLMVLLMENWPGTFNLKYHQE--- 147 (210)
T ss_pred HHHHHHHHHHccCHH----HHHHHHHHHHHhCccccCceeEec-ChhhhhhH---HHHHHHHHHhcCCCeEEEEcCC---
Confidence 778878877777764 444444433332222 2344444 55433222 2223334455665556666542
Q ss_pred CCCCCccEEEEecC
Q psy12089 198 PVDTTGGIELLAQR 211 (467)
Q Consensus 198 ~~~~~GGvvl~s~d 211 (467)
-+||+++++
T Consensus 148 -----~rFV~~~g~ 156 (210)
T PRK15322 148 -----QRFIMSCGD 156 (210)
T ss_pred -----CceEEEeCC
Confidence 478888853
No 75
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=91.65 E-value=13 Score=35.52 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=94.1
Q ss_pred CCCcccccchhHHHHHH----H---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 243 NPNLMALSDADVQKQIK----H---M--MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQ 313 (467)
Q Consensus 243 ~~~r~~~~d~~~~~~l~----k---m--~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~ 313 (467)
.|++.......+.-+|. + | ..-|++.|..||++|...|.++-...+.+ ..++.+++...-..++..
T Consensus 15 lP~g~iI~a~~~~~~L~~~~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~q-aqqqad~L~~~~~~~~E~---- 89 (224)
T PRK15354 15 LPARNIIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVE-QQQELACLRKNTLEKMEV---- 89 (224)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----
Confidence 45555544444333343 2 2 34688899999999998888775542221 122223333322222211
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------cChhHHHHHHHHHHHHHHHhcCCCceEEEeccc
Q psy12089 314 KKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVT--------KNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREV 385 (467)
Q Consensus 314 r~i~~S~a~~~aR~~~L~ar~e~i~~v~~~a~~~L~~l~--------~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~ 385 (467)
.-++..-.-|-+-+++...++..++++|..-. +..+-=.-+...|-.+....-.++.+++++.|.
T Consensus 90 -------~~L~qHV~wLve~e~lE~sLV~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~ 162 (224)
T PRK15354 90 -------EWLEQHVKHLQEDENQFRSLVDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPE 162 (224)
T ss_pred -------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHH
Confidence 11222233334444444444444444443311 111112445666666766666688899999999
Q ss_pred cHHHHHhhHHHHHHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHH
Q psy12089 386 DKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLEL 448 (467)
Q Consensus 386 D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~ 448 (467)
+.+.+... +|..+++.++++ .+ .+--.|.|+ ...+.-+|+.-|..
T Consensus 163 ~~~am~~a-----------fG~R~~~v~d~~--~a---~dQAeLsSp--~l~v~~sL~rHL~q 207 (224)
T PRK15354 163 KEALMRET-----------FGKRFTLIIEPG--FS---PDQAELSST--RYAVEFSLSRHFNA 207 (224)
T ss_pred HHHHHHHH-----------HhcceeeeecCC--cC---hhhHHhcCC--ceEEeeeHHHHHHH
Confidence 98877665 455677777763 22 234455563 55666666665543
No 76
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=91.65 E-value=11 Score=34.82 Aligned_cols=93 Identities=13% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 120 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~ 120 (467)
...+.+|+.+|.+|...|.++++.++..++.+.........+....+++ .+.....-..|.++.+-.+.
T Consensus 76 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~-----------~e~~~a~~~l~~~i~~lA~~ 144 (175)
T PRK14472 76 RELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIE-----------QEKRRALDVLRNEVADLAVK 144 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999888887776664433222222211221 22222222345555555555
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHH
Q psy12089 121 EARKRLGEVTKNRDKYTQLIEKLII 145 (467)
Q Consensus 121 ~a~e~L~~~~~~~~~Y~~lL~~Li~ 145 (467)
-|.+-|....+ ++....++...|.
T Consensus 145 ~a~kil~~~l~-~~~~~~li~~~i~ 168 (175)
T PRK14472 145 GAEKIIRTSLD-ADKQKKVVDSMIQ 168 (175)
T ss_pred HHHHHHHHHCC-HHHHHHHHHHHHH
Confidence 55555555432 2234555555443
No 77
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=91.33 E-value=13 Score=35.59 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 342 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~ 342 (467)
+..+++|+.+|.+|...|.++++..+..++.+....+....+.- .+....+.+...-.-+.++.+-..+
T Consensus 106 e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A-----------~~~Ie~Ek~~a~~~Lk~ei~~lAv~ 174 (205)
T PRK06231 106 KQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQA-----------RQEIEKERRELKEQLQKESVELAML 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888766666554443332111111 1122222222333445666666666
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHHH
Q psy12089 343 EARKRLGEVTKNRDKYTQLIEKLIIQ 368 (467)
Q Consensus 343 ~a~~~L~~l~~~~~~Y~~~L~~Li~e 368 (467)
-|..-|.+-. +++....++.+.|.+
T Consensus 175 iA~kiL~k~l-d~~~~~~lI~~~i~~ 199 (205)
T PRK06231 175 AAEELIKKKV-DREDDDKLVDEFIRE 199 (205)
T ss_pred HHHHHHHhhC-CHHHHHHHHHHHHHH
Confidence 6666666633 233566666666654
No 78
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=91.14 E-value=8.8 Score=41.06 Aligned_cols=104 Identities=8% Similarity=0.054 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 341 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~ 341 (467)
.+.++++|+.++.+|+..|.++++..+..++.+....+....+.-.. ....+....+-..|.++.+-++
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~-----------~Ie~ek~~a~~elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGAR-----------QVQLLRAQLTRQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888888888776666655444333222111111 1122222233345667777777
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCc
Q psy12089 342 DEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPN 377 (467)
Q Consensus 342 ~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~ 377 (467)
+.|..-|.+-..++.....++...|.+ +..++++.
T Consensus 127 ~~A~kil~~~l~d~~~~~~lId~~i~~-l~~~~~~~ 161 (445)
T PRK13428 127 RQAGELVRNHVADPAQQSATVDRFLDE-LDAMAPST 161 (445)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccCCCc
Confidence 777777765322222345666666644 34444443
No 79
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=91.12 E-value=4.6 Score=37.45 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=34.7
Q ss_pred HHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhh
Q psy12089 402 QDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 453 (467)
Q Consensus 402 ~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~ 453 (467)
...+|..+.+... ..++.+||+++.. |+-.+|+|+-++|+.+...+
T Consensus 132 ~~~~~~~~~~~~~----vd~sligG~~i~~--~~~~iD~Si~~~L~~l~~~l 177 (181)
T PRK13429 132 EKMTGKKVELDTA----VDPSLIGGVVVKI--GDKVLDASVRTQLRRLKETL 177 (181)
T ss_pred HHHHCCEEEEEee----eChhhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 4456765554422 2347899999999 78999999999999887765
No 80
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=90.66 E-value=3.1 Score=33.83 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy12089 15 MMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQH 72 (467)
Q Consensus 15 ~~~~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ 72 (467)
++.-.......|++++..++. ++..-+..+|+..+..|..+|..+.+.++..++..
T Consensus 14 ~l~~A~~ea~~Ii~~A~~~A~--~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e 69 (85)
T TIGR02926 14 LIEEAEEERKQRIAEAREEAR--ELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREE 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443332 44444455555555555555555554444444433
No 81
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=90.60 E-value=16 Score=34.83 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 119 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~ 119 (467)
-...+++|+.+|.+|...|.++++..+..++.+....+....+....+++ .+.+...-.-+.++.+-..
T Consensus 105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie-----------~Ek~~a~~~Lk~ei~~lAv 173 (205)
T PRK06231 105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIE-----------KERRELKEQLQKESVELAM 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999988888877665443333222222222 2222222233555555556
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHH
Q psy12089 120 DEARKRLGEVTKNRDKYTQLIEKLIIQ 146 (467)
Q Consensus 120 ~~a~e~L~~~~~~~~~Y~~lL~~Li~q 146 (467)
.-|..-|..-- +++....++.+.|.+
T Consensus 174 ~iA~kiL~k~l-d~~~~~~lI~~~i~~ 199 (205)
T PRK06231 174 LAAEELIKKKV-DREDDDKLVDEFIRE 199 (205)
T ss_pred HHHHHHHHhhC-CHHHHHHHHHHHHHH
Confidence 66666555543 333566666666643
No 82
>PRK15322 invasion protein OrgB; Provisional
Probab=90.57 E-value=16 Score=34.73 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 341 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~ 341 (467)
...+.+.|+.+|.+|...|+.+++.-.. .+-.+.|..-+.++... ++.--+ .-+.| ..++..+|-
T Consensus 14 a~~l~~qA~~kA~~ii~qA~~eaE~ir~-------~A~~~GYq~Gl~qa~~~--la~~~a----~~~~l--~~~l~~~ie 78 (210)
T PRK15322 14 AERLEQQARRRAKRILRQAEEEAETLRM-------YAYQEGYEQGMIDALQQ--VAAYLT----DNQTM--AWKWMEKIQ 78 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHH----HHHHH--HHHHHHHHH
Confidence 4578899999999999999999986332 12235565444432221 111111 12222 447888888
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcC--CCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecCCCCC
Q psy12089 342 DEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLL--EPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFL 419 (467)
Q Consensus 342 ~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~--~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~~~~~ 419 (467)
+.++.-|...-.+|+ +|-.++.+=+..+. ++.+.|++-+.=++.-.++ .. .+.+.+|..+.|+..+
T Consensus 79 ~~~r~lls~~Ld~pd----~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L-~~---~l~e~w~~~~~i~yhd---- 146 (210)
T PRK15322 79 IYARELFSAAVDHPE----TLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKL-MV---LLMENWPGTFNLKYHQ---- 146 (210)
T ss_pred HHHHHHHHHHccCHH----HHHHHHHHHHHhCccccCceeEecChhhhhhHHHH-HH---HHHHhcCCCeEEEEcC----
Confidence 888888888877764 44444443222222 2345555443322222222 22 2233466555666554
Q ss_pred CCCCCCcEEEEecCCcEEEeccHHHHHHHH
Q psy12089 420 PVDTTGGIELLAQRGKIKISNTLEARLELI 449 (467)
Q Consensus 420 ~~~~~GGvvl~s~dG~I~vdnTle~RL~~~ 449 (467)
.-+||++| |.-.+.-+=..-++.+
T Consensus 147 ----~~rFV~~~--g~qIaEFsPq~~v~~a 170 (210)
T PRK15322 147 ----EQRFIMSC--GDQIAEFSPEQFVETA 170 (210)
T ss_pred ----CCceEEEe--CCchhccCHHHHHHHH
Confidence 35899999 4444444444444333
No 83
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=90.54 E-value=4.8 Score=37.18 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=42.5
Q ss_pred cEEEE-eccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhc
Q psy12089 155 NVLIR-SREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 231 (467)
Q Consensus 155 ~vvv~-~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~ 231 (467)
.+.|+ ..|=+-+..+.+.. .+...+|..+.+... .+++.+||+++.- |+-.+|+|+.++|+.+...+
T Consensus 108 ~~~v~sa~~l~~~~~~~i~~----~l~~~~~~~v~l~~~----vd~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l 175 (177)
T PRK05758 108 DAEVTSAFPLSEEQLDKLKA----ALEKRLGRKVKLNEK----VDPSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL 175 (177)
T ss_pred EEEEEEccCCCHHHHHHHHH----HHHHHHCCeeEEEee----EChHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence 34443 33444344443333 344556765443332 2457999999998 57999999999999887765
No 84
>PRK00106 hypothetical protein; Provisional
Probab=90.51 E-value=22 Score=38.89 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12089 103 ARLKALKVREDHVRNVLDEARKRLGEVT 130 (467)
Q Consensus 103 ~R~~~L~ar~e~l~~v~~~a~e~L~~~~ 130 (467)
.|.+-|..+..-++.+..+....|..++
T Consensus 136 ~reeeLee~~~~~~~~~~~~~~~Le~~a 163 (535)
T PRK00106 136 DKSKHIDEREEQVEKLEEQKKAELERVA 163 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555544
No 85
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=90.26 E-value=15 Score=33.90 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 120 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~ 120 (467)
...+++|+.++.+|...|..+++..+..++......+....+....+++.+++ ..+-.-+.++.+-.+.
T Consensus 74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~-----------~a~~el~~ei~~lA~~ 142 (173)
T PRK13460 74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKG-----------KALSQLQNQIVEMTIT 142 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 35678889999999999999999888888776654443333222222222211 1112335566666666
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHH
Q psy12089 121 EARKRLGEVTKNRDKYTQLIEKLII 145 (467)
Q Consensus 121 ~a~e~L~~~~~~~~~Y~~lL~~Li~ 145 (467)
-|.+-|.+-.+ ++....++...|.
T Consensus 143 ~a~kil~~~l~-~~~~~~lid~~i~ 166 (173)
T PRK13460 143 IASKVLEKQLK-KEDYKAFIETELA 166 (173)
T ss_pred HHHHHHHHHCC-HHHHHHHHHHHHH
Confidence 66666666543 2345555555554
No 86
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=90.19 E-value=16 Score=34.09 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 120 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~ 120 (467)
...+++|+.++.+|...|..+++.++..++.+....+....+.-..+++ .+.+...-..+.++.+-+++
T Consensus 82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie-----------~Ek~~a~~~l~~ei~~lav~ 150 (184)
T CHL00019 82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIR-----------FEQQRAINQVRQQVFQLALQ 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999888887775544333333222222 22333333556777777777
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHHH
Q psy12089 121 EARKRLGEVTKNRDKYTQLIEKLIIQ 146 (467)
Q Consensus 121 ~a~e~L~~~~~~~~~Y~~lL~~Li~q 146 (467)
.|..-|...-+ ++....++...|.+
T Consensus 151 ~A~kil~~~ld-~~~~~~lid~~i~~ 175 (184)
T CHL00019 151 RALGTLNSCLN-NELHLRTINANIGL 175 (184)
T ss_pred HHHHHHHhHcC-HHHHHHHHHHHHHH
Confidence 77777777553 33456666666543
No 87
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=89.73 E-value=6.1 Score=36.33 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=34.9
Q ss_pred HHHHHHHhCC-ceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHh
Q psy12089 176 AKAYQDVAGK-EVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQ 230 (467)
Q Consensus 176 ~~~~~~~~g~-~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~ 230 (467)
.+.+...+|. .+++... .+|+.+||+++.- |.-.+|+|+.++|..+...
T Consensus 122 ~~~l~~~~~~~~v~~~~~----vd~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~ 171 (172)
T TIGR01145 122 AEKLEKITGAAKVKLNCK----VDKDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ 171 (172)
T ss_pred HHHHHHHhCCCeEEEEEe----ECHHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence 3344555665 5554442 1357899999998 5799999999999887654
No 88
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=89.68 E-value=11 Score=34.48 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhCCc----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy12089 13 KHMMAFIEQEANAIGDD----ADVQKQIKHM---MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKE 85 (467)
Q Consensus 13 ~~~~~~~~~~~~~~~~d----~~~~~~i~~m---~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~ 85 (467)
+-++.++++=.+.|.++ ....++...+ -...+..|+.++.+|...|.++++.++..+...... +.++..
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~----ea~~~~ 108 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEE----QIKRRA 108 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 33555555555555444 1222222222 234567788888888888888887766665544322 222211
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcChhHHHHHHHHHHHH
Q psy12089 86 KQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGE-VTKNRDKYTQLIEKLIIQ 146 (467)
Q Consensus 86 k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~a~e~L~~-~~~~~~~Y~~lL~~Li~q 146 (467)
.+++. .+...... .+-..|.++.+-....|.+-|.. ++. +....++...|.+
T Consensus 109 ~~A~~----~I~~e~~~---a~~el~~e~~~lAv~~A~kil~~~l~~--~~~~~lid~~i~~ 161 (167)
T PRK14475 109 EMAER----KIAQAEAQ---AAADVKAAAVDLAAQAAETVLAARLAG--AKSDPLVDAAIGQ 161 (167)
T ss_pred HHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHcCH--HHHHHHHHHHHHH
Confidence 11111 11111111 11233555555566666666633 333 3456666666654
No 89
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=89.01 E-value=14 Score=33.57 Aligned_cols=93 Identities=25% Similarity=0.252 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 121 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~ 121 (467)
.-+..|+.++.+|...|..+++.. ++..........++...+++. ....+....+-..|.++.+-.+.-
T Consensus 61 ~~L~~A~~ea~~ii~~A~~~a~~~----~~~a~~~a~~~~~~~~~~a~~-------~I~~ek~~a~~el~~~~~~lA~~~ 129 (159)
T PRK09173 61 RKRKEAEKEAADIVAAAEREAEAL----TAEAKRKTEEYVARRNKLAEQ-------KIAQAETDAINAVRSSAVDLAIAA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777533 323222222222221111111 111111111223345555555555
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHH
Q psy12089 122 ARKRLGEVTKNRDKYTQLIEKLIIQ 146 (467)
Q Consensus 122 a~e~L~~~~~~~~~Y~~lL~~Li~q 146 (467)
|..-|..-. +++....++...|.+
T Consensus 130 A~kil~~~l-~~~~~~~li~~~i~~ 153 (159)
T PRK09173 130 AEKLLAEKV-DAKAASELFKDALAQ 153 (159)
T ss_pred HHHHHHhhc-CHHHHHHHHHHHHHH
Confidence 555555533 333466666666654
No 90
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=88.60 E-value=21 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy12089 43 IEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR 74 (467)
Q Consensus 43 I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek 74 (467)
-+++|+.++.+|+..|..+++.++.++..+..
T Consensus 87 ~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~ 118 (184)
T PRK13455 87 KQREVQEQADRIVAAAKDEAQAAAEQAKADLE 118 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888766665554443
No 91
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=88.26 E-value=12 Score=33.94 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKI 77 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I 77 (467)
...+++|+.+|.+|...|.++++.++..++.+.....
T Consensus 80 e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea 116 (156)
T CHL00118 80 EQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYI 116 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888887777766554433
No 92
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=88.22 E-value=6.2 Score=36.61 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHH
Q psy12089 397 VAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRV 459 (467)
Q Consensus 397 ~~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~ 459 (467)
..+.+.+.+|+.+.++... +.+|||++.. |..++|.| ..|+++...+..-|-+
T Consensus 122 i~~~l~~~~g~~v~l~~~v------D~IGG~ii~i--gd~v~D~s--~~l~~~~~~~~~~~~~ 174 (176)
T PRK08474 122 LEEKLSKKFNAKIKLKQKK------SDYDGIKVEV--DDLGVEVS--FSKDRLKNQLIEYILK 174 (176)
T ss_pred HHHHHHHHhCCeEEEEEEE------cCCCCEEEEE--CCEEEEee--eeHHHHHHHHHHHHHh
Confidence 3444456678766655442 2299999999 88999994 5677777666555443
No 93
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=88.02 E-value=21 Score=32.56 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 341 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~ 341 (467)
....+.+|+.+|.+|+..|..+++..+..++.....+.....+.-..+ ...+.....-..|.++.+-.+
T Consensus 65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~-----------I~~ek~~a~~~L~~~i~~la~ 133 (164)
T PRK14473 65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQ-----------AEQERQRMLSELKSQIADLVT 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777778777777777766666555444332222111111 111122222233455555555
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHH
Q psy12089 342 DEARKRLGEVTKNRDKYTQLIEKLIIQ 368 (467)
Q Consensus 342 ~~a~~~L~~l~~~~~~Y~~~L~~Li~e 368 (467)
+-|..-|..-. +++.+..++...|.+
T Consensus 134 ~~a~kil~~~l-~~~~~~~li~~~i~~ 159 (164)
T PRK14473 134 LTASRVLGAEL-QARGHDALIAESLAA 159 (164)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHHHh
Confidence 55555554422 333455555555543
No 94
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=87.97 E-value=20 Score=32.24 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 341 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~ 341 (467)
....+.+|+.++.+|+..|..+++.++..++......+....+.-. .....+.....-..+.++.+-++
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~-----------~~i~~e~~~a~~~l~~~~~~lA~ 129 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQ-----------AEIEQERKRAREELRKQVADLAV 129 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777888888888888777666665544433322211111 11222222233344666666666
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHH
Q psy12089 342 DEARKRLGEVTKNRDKYTQLIEKLI 366 (467)
Q Consensus 342 ~~a~~~L~~l~~~~~~Y~~~L~~Li 366 (467)
.-|..-|..... +.....++.+.|
T Consensus 130 ~~a~k~l~~~~d-~~~~~~~i~~~i 153 (156)
T PRK05759 130 AGAEKILGRELD-AAAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHhHcC-HHHHHHHHHHHH
Confidence 666666666432 223444544444
No 95
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=87.95 E-value=20 Score=32.42 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 342 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~ 342 (467)
...+.+|+.++.+|+..|..+++..+..++.+.........+.-. ...........-..|.++.+-.+.
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~-----------~~i~~e~~~a~~~l~~ei~~lA~~ 131 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAK-----------LEAQREKEKAEYEIKNQAVDLAVL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888887777666655543322211111 111122222333445555566666
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHH
Q psy12089 343 EARKRLGEVTKNRDKYTQLIEKLII 367 (467)
Q Consensus 343 ~a~~~L~~l~~~~~~Y~~~L~~Li~ 367 (467)
-|..-|..-.+ ++....++...|.
T Consensus 132 ~a~kil~~~~~-~~~~~~li~~~i~ 155 (159)
T PRK13461 132 LSSKALEESID-ESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHhHcC-HHHHHHHHHHHHh
Confidence 66665555433 2244555554443
No 96
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=87.82 E-value=5.1 Score=37.39 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=35.0
Q ss_pred HHHHHHhC-CcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhh
Q psy12089 399 KAYQDVAG-KEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 454 (467)
Q Consensus 399 ~~~~~~~g-~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~ 454 (467)
+.+...+| ..+.+... .+++.+||+++.. |+-.+|.|+.++|+.....+.
T Consensus 130 ~~L~~~~~~~~v~l~~~----vD~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~ 180 (184)
T CHL00119 130 EKLKEMTNAKEIKLVIT----VDPSLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD 180 (184)
T ss_pred HHHHHHhCCCeEEEEee----eChHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 33444555 34433331 2347899999999 789999999999988776654
No 97
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=87.49 E-value=21 Score=32.05 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12089 39 MMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNV 118 (467)
Q Consensus 39 m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v 118 (467)
=....+.+|+.++.+|...|..+++.++..++......+....+.-..+++. +.....-..+.++.+-.
T Consensus 60 e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~-----------e~~~a~~~l~~~~~~lA 128 (156)
T PRK05759 60 KYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQ-----------ERKRAREELRKQVADLA 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999998888888766654443333222222221 12222234456666666
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHHH
Q psy12089 119 LDEARKRLGEVTKNRDKYTQLIEKLI 144 (467)
Q Consensus 119 ~~~a~e~L~~~~~~~~~Y~~lL~~Li 144 (467)
..-|..-|....+ ++....++...|
T Consensus 129 ~~~a~k~l~~~~d-~~~~~~~i~~~i 153 (156)
T PRK05759 129 VAGAEKILGRELD-AAAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHHhHcC-HHHHHHHHHHHH
Confidence 6666666665443 223445555444
No 98
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=86.83 E-value=0.085 Score=48.59 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEec----cccHHHHHhhHHHHHHHHHHHhCC-cceEEecCCCCCCCCCCCcEEEEec
Q psy12089 358 YTQLIEKLIIQGLLQLLEPNVLIRSR----EVDKDIVNAVLPNVAKAYQDVAGK-EVNLKLDNDQFLPVDTTGGIELLAQ 432 (467)
Q Consensus 358 Y~~~L~~Li~e~~~~l~~~~~~I~~~----~~D~~~v~~~~~~~~~~~~~~~g~-~~~i~i~~~~~~~~~~~GGvvl~s~ 432 (467)
+++++..+........+...+.|++. +.....+.+.+ ...+|. .+.++.. ..++++|||++..
T Consensus 85 l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l-------~~~~~~~~v~~~~~----vD~sLigG~~i~~- 152 (172)
T PF00213_consen 85 LPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKL-------KKKYGKKKVELNYK----VDPSLIGGFIIEV- 152 (172)
T ss_dssp HHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTC-------CCTTTT--------------------------
T ss_pred HHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHH-------HHHHCCCeeeEEEE----EccccCcEEEEEE-
Confidence 45555555554444444444444432 33344444433 344554 3333222 3458999999999
Q ss_pred CCcEEEeccHHHHHHHHHHh
Q psy12089 433 RGKIKISNTLEARLELIAQQ 452 (467)
Q Consensus 433 dG~I~vdnTle~RL~~~~~~ 452 (467)
|+-++|.|+-++|+.+...
T Consensus 153 -~~~~iD~Sv~~~L~~l~~~ 171 (172)
T PF00213_consen 153 -GDKVIDASVKSRLEQLKKE 171 (172)
T ss_dssp -----TTTTTTTTTTTT-TT
T ss_pred -CCEEEehhHHHHHHHHHhc
Confidence 8999999999999876654
No 99
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=86.65 E-value=13 Score=34.30 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEE-eccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCce
Q psy12089 136 YTQLIEKLIIQGLLQLLEPNVLIR-SREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKI 214 (467)
Q Consensus 136 Y~~lL~~Li~q~~~~l~e~~vvv~-~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I 214 (467)
+..++..+........+.-.+.|. +.|=+-.....+.. .+...+|..+.+... .+++.+||+++.. |.-
T Consensus 91 l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~----~L~~~~~~~~~~~~~----vd~sligG~~i~~--~~~ 160 (181)
T PRK13429 91 LPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQ----KLEKMTGKKVELDTA----VDPSLIGGVVVKI--GDK 160 (181)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHH----HHHHHHCCEEEEEee----eChhhhCceEEEE--CCE
Confidence 444444444333333333334333 33444344444333 334556766655432 1357899999998 578
Q ss_pred EEeccHHHHHHHHHHhc
Q psy12089 215 KISNTLEARLELIAQQI 231 (467)
Q Consensus 215 ~vdNTle~RL~~~~~~~ 231 (467)
.+|+|+-++|+.+...+
T Consensus 161 ~iD~Si~~~L~~l~~~l 177 (181)
T PRK13429 161 VLDASVRTQLRRLKETL 177 (181)
T ss_pred EEehhHHHHHHHHHHHH
Confidence 99999999999887765
No 100
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=86.27 E-value=19 Score=32.15 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDR 83 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~ 83 (467)
.++++|+.+|..+...+..++..+..+++++....+.....+
T Consensus 66 ~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~ 107 (141)
T PRK08476 66 TILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEA 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666666665555444433
No 101
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=86.10 E-value=32 Score=32.84 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEE
Q psy12089 137 TQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKI 216 (467)
Q Consensus 137 ~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~v 216 (467)
.-+...|-.|....-.++.+++++.|.+.+.+... .|..+++.++++ ++ .+--.|.|+ ...|
T Consensus 136 q~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~a-----------fG~R~~~v~d~~--~a---~dQAeLsSp--~l~v 197 (224)
T PRK15354 136 SVMCHRLARQATAMAEEGALYLRIHPEKEALMRET-----------FGKRFTLIIEPG--FS---PDQAELSST--RYAV 197 (224)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHH-----------HhcceeeeecCC--cC---hhhHHhcCC--ceEE
Confidence 45666677777776678899999999998776543 366677777764 22 234456665 5566
Q ss_pred eccHHHHHH
Q psy12089 217 SNTLEARLE 225 (467)
Q Consensus 217 dNTle~RL~ 225 (467)
.-+|+.-|.
T Consensus 198 ~~sL~rHL~ 206 (224)
T PRK15354 198 EFSLSRHFN 206 (224)
T ss_pred eeeHHHHHH
Confidence 666665553
No 102
>KOG1662|consensus
Probab=86.06 E-value=3.5 Score=38.86 Aligned_cols=49 Identities=24% Similarity=0.406 Sum_probs=35.4
Q ss_pred HHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHH
Q psy12089 399 KAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQ 451 (467)
Q Consensus 399 ~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~ 451 (467)
.......|.+-++++.. .-.++++||+||+. |.=.+|-|+.+|+..+-.
T Consensus 156 ~~l~k~l~~gk~l~v~~--~vdPSI~GGliVei--GdK~vDmSI~tr~q~l~~ 204 (210)
T KOG1662|consen 156 KALQKILGGGKKLKVEN--KVDPSIIGGLIVEI--GDKYVDMSIKTRLQKLNK 204 (210)
T ss_pred HHHHHHhcCCceEEEEe--ecChhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence 33344455544555554 25568999999998 788999999999987655
No 103
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=85.98 E-value=24 Score=31.31 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKI 77 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I 77 (467)
....+++|+.+|.+|...|..+++..+..++.+....+
T Consensus 52 ~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~ 89 (147)
T TIGR01144 52 AQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREER 89 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999888777776654433
No 104
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=85.43 E-value=29 Score=31.62 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVL 119 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~ 119 (467)
-...+.+|+.+|.+|...|..+++..+..++...........+.-..+++.++... .-..|.++.+-.+
T Consensus 65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a-----------~~~L~~~i~~la~ 133 (164)
T PRK14473 65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRM-----------LSELKSQIADLVT 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 44577889999999999999999988888887776555444433333333322221 2233444555555
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHH
Q psy12089 120 DEARKRLGEVTKNRDKYTQLIEKLII 145 (467)
Q Consensus 120 ~~a~e~L~~~~~~~~~Y~~lL~~Li~ 145 (467)
.-|..-|..-- +++.+..++...|.
T Consensus 134 ~~a~kil~~~l-~~~~~~~li~~~i~ 158 (164)
T PRK14473 134 LTASRVLGAEL-QARGHDALIAESLA 158 (164)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHHH
Confidence 55555444432 33345665555554
No 105
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=85.30 E-value=17 Score=33.67 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHH
Q psy12089 170 AVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIR 236 (467)
Q Consensus 170 ~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~ 236 (467)
+.+..+.+.+.+.+|..++++... +.+||+++.- |..++|. ...|+.+..++..-|-
T Consensus 117 ~q~~~i~~~l~~~~g~~v~l~~~v------D~IGG~ii~i--gd~v~D~--s~~l~~~~~~~~~~~~ 173 (176)
T PRK08474 117 ETLKKLEEKLSKKFNAKIKLKQKK------SDYDGIKVEV--DDLGVEV--SFSKDRLKNQLIEYIL 173 (176)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEE------cCCCCEEEEE--CCEEEEe--eeeHHHHHHHHHHHHH
Confidence 334444555666778766666543 2299999998 5788888 4566767666655443
No 106
>PRK12704 phosphodiesterase; Provisional
Probab=85.27 E-value=63 Score=35.39 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=12.3
Q ss_pred HHHhhHHHHHHHHHHHhCCceeEEe
Q psy12089 167 IVNAVLPNVAKAYQDVAGKEVNLKL 191 (467)
Q Consensus 167 ~v~~~i~~~~~~~~~~~g~~~~i~i 191 (467)
..+.++..+.+.|..-+-.+.++++
T Consensus 189 ~a~~i~~~a~qr~a~~~~~e~~~~~ 213 (520)
T PRK12704 189 KAKEILAQAIQRCAADHVAETTVSV 213 (520)
T ss_pred HHHHHHHHHHHhhcchhhhhhceee
Confidence 4455666666666533333333443
No 107
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.17 E-value=62 Score=35.38 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=12.0
Q ss_pred HHHhhHHHHHHHHHHHhCCceeEEe
Q psy12089 167 IVNAVLPNVAKAYQDVAGKEVNLKL 191 (467)
Q Consensus 167 ~v~~~i~~~~~~~~~~~g~~~~i~i 191 (467)
..+.++..+.+.|..-+-.+.++++
T Consensus 183 ~a~~i~~~aiqr~a~~~~~e~~~~~ 207 (514)
T TIGR03319 183 KAKEILATAIQRYAGDHVAETTVSV 207 (514)
T ss_pred HHHHHHHHHHHhccchhhhhheeee
Confidence 3455566666666433323333443
No 108
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=85.07 E-value=29 Score=31.39 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 120 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~ 120 (467)
...+.+|+.++.+|...|..+++..+..++.+.........+.-..+++. +.....-..+.++.+-.+.
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~-----------e~~~a~~~l~~ei~~lA~~ 131 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQR-----------EKEKAEYEIKNQAVDLAVL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999988888877755443333322222222 1122222335555555555
Q ss_pred HHHHHHhhhhcChhHHHHHHHHHHH
Q psy12089 121 EARKRLGEVTKNRDKYTQLIEKLII 145 (467)
Q Consensus 121 ~a~e~L~~~~~~~~~Y~~lL~~Li~ 145 (467)
-|..-|....+ ++....++...|.
T Consensus 132 ~a~kil~~~~~-~~~~~~li~~~i~ 155 (159)
T PRK13461 132 LSSKALEESID-ESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHhHcC-HHHHHHHHHHHHh
Confidence 55555555443 2345555555543
No 109
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=84.73 E-value=13 Score=33.88 Aligned_cols=33 Identities=3% Similarity=-0.129 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQ 73 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~e 73 (467)
...+.+|+.+|.+|...|.+.++.....+..+.
T Consensus 62 e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA 94 (154)
T PRK06568 62 NAQIKKLETLRSQMIEESNEVTKKIIQEKTKEI 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888866555554433
No 110
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=84.08 E-value=32 Score=31.17 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQ 295 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e 295 (467)
+..+++|+.+|.+|...|.++++..+..++.+.
T Consensus 80 e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A 112 (156)
T CHL00118 80 EQELSKARKEAQLEITQSQKEAKEIVENELKQA 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665444444333
No 111
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=83.67 E-value=30 Score=30.44 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRL 75 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~ 75 (467)
-...+.+|+.++.+|...|..+++.++..++.....
T Consensus 62 ~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ 97 (140)
T PRK07353 62 YEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQA 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888888877766543
No 112
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=83.30 E-value=36 Score=30.99 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy12089 39 MMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR 74 (467)
Q Consensus 39 m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek 74 (467)
-....+.+|+.++.+|...|.++++..+..++.+..
T Consensus 64 e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~ 99 (164)
T PRK14471 64 DNERLLKEARAERDAILKEAREIKEKMIADAKEEAQ 99 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888888888888777766665543
No 113
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=82.98 E-value=0.075 Score=48.94 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCC-ceeEEecCCCCCCCCCCccEEEEecCCce
Q psy12089 136 YTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGK-EVNLKLDNDQFLPVDTTGGIELLAQRGKI 214 (467)
Q Consensus 136 Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~-~~~i~i~~~~~l~~~~~GGvvl~s~dG~I 214 (467)
++.++..+..-.....+...+.|.+.. ++-+.....+.+.+...+|. .+.++.. .+|+++|||++.. |+-
T Consensus 85 l~~i~~~~~~~~~~~~~~~~~~V~sA~---~l~~~q~~~l~~~l~~~~~~~~v~~~~~----vD~sLigG~~i~~--~~~ 155 (172)
T PF00213_consen 85 LPEILEEFEELVNEHNGIVEATVTSAF---PLSEEQKKKLEKKLKKKYGKKKVELNYK----VDPSLIGGFIIEV--GDK 155 (172)
T ss_dssp HHHHHHHHHHHHHHHCCTS-B-SSS-B-------SSSTTTTTTCCCTTTT------------------------------
T ss_pred HHHHHHHHHHHHHHHcCeEEEEEEEec---CCCHHHHHHHHHHHHHHHCCCeeeEEEE----EccccCcEEEEEE--CCE
Confidence 455555555544444444444443321 12222222222233445555 4433322 3468999999998 589
Q ss_pred EEeccHHHHHHHHHHh
Q psy12089 215 KISNTLEARLELIAQQ 230 (467)
Q Consensus 215 ~vdNTle~RL~~~~~~ 230 (467)
++|.|+-++|+.+..+
T Consensus 156 ~iD~Sv~~~L~~l~~~ 171 (172)
T PF00213_consen 156 VIDASVKSRLEQLKKE 171 (172)
T ss_dssp -TTTTTTTTTTTT-TT
T ss_pred EEehhHHHHHHHHHhc
Confidence 9999999999877654
No 114
>PRK12704 phosphodiesterase; Provisional
Probab=82.97 E-value=58 Score=35.63 Aligned_cols=28 Identities=14% Similarity=0.442 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12089 325 ARLKALKVREDHVRNVLDEARKRLGEVT 352 (467)
Q Consensus 325 aR~~~L~ar~e~i~~v~~~a~~~L~~l~ 352 (467)
.+.+-|..+.+-++++..+....|...+
T Consensus 121 ~re~eLe~~~~~~~~~~~~~~~~l~~~a 148 (520)
T PRK12704 121 QKQQELEKKEEELEELIEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555543
No 115
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=82.94 E-value=38 Score=31.04 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=4.7
Q ss_pred HHHHHhhHHH
Q psy12089 165 KDIVNAVLPN 174 (467)
Q Consensus 165 ~~~v~~~i~~ 174 (467)
..++..+|.+
T Consensus 152 ~~lid~~i~~ 161 (167)
T PRK14475 152 DPLVDAAIGQ 161 (167)
T ss_pred HHHHHHHHHH
Confidence 3455555443
No 116
>PRK00106 hypothetical protein; Provisional
Probab=82.67 E-value=71 Score=35.09 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12089 43 IEQEANEKAEEIDAKAEEEFN 63 (467)
Q Consensus 43 I~~EA~eka~eI~~~Aeee~~ 63 (467)
|..+|+.+|++|...|..++.
T Consensus 47 IleeAe~eAe~I~keA~~EAk 67 (535)
T PRK00106 47 LRGKAERDAEHIKKTAKRESK 67 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 117
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=82.09 E-value=23 Score=33.02 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhC-CceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhch
Q psy12089 173 PNVAKAYQDVAG-KEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 232 (467)
Q Consensus 173 ~~~~~~~~~~~g-~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~l 232 (467)
..+.+.+...+| ..+.+... .+++.+||+++.. |.-++|+|+.++|+.+...+.
T Consensus 126 ~~l~~~L~~~~~~~~v~l~~~----vD~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~ 180 (184)
T CHL00119 126 EALIEKLKEMTNAKEIKLVIT----VDPSLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD 180 (184)
T ss_pred HHHHHHHHHHhCCCeEEEEee----eChHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 333444455566 34433332 1357899999998 579999999999988877654
No 118
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=81.88 E-value=37 Score=30.15 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR 296 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~ 296 (467)
....+++|+.+|.+|+..|..+++..+..++.+..
T Consensus 52 ~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~ 86 (147)
T TIGR01144 52 AQVILKEAKDEAQEIIENANKRGSEILEEAKAEAR 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888888776665554444
No 119
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.63 E-value=66 Score=35.16 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=12.3
Q ss_pred HHhhHHHHHHHHHHHhCCcceEEec
Q psy12089 390 VNAVLPNVAKAYQDVAGKEVNLKLD 414 (467)
Q Consensus 390 v~~~~~~~~~~~~~~~g~~~~i~i~ 414 (467)
.+.++..+.+-|..-+-.+.++++-
T Consensus 184 a~~i~~~aiqr~a~~~~~e~~~~~v 208 (514)
T TIGR03319 184 AKEILATAIQRYAGDHVAETTVSVV 208 (514)
T ss_pred HHHHHHHHHHhccchhhhhheeeeE
Confidence 4555666666664433333444443
No 120
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=80.80 E-value=48 Score=31.63 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNI 286 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ 286 (467)
+..+.+|+.++.+|+..|.++++.
T Consensus 111 e~~L~~Ar~eA~~Ii~~Ar~ea~~ 134 (204)
T PRK09174 111 EQELAQARAKAHSIAQAAREAAKA 134 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665554
No 121
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=80.31 E-value=51 Score=30.73 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR 74 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek 74 (467)
...++++|+.++.+|...|.++++.++..++.+..
T Consensus 88 ye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~ 122 (181)
T PRK13454 88 YNKALADARAEAQRIVAETRAEIQAELDVAIAKAD 122 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888777666665543
No 122
>KOG1662|consensus
Probab=79.47 E-value=10 Score=35.81 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHH
Q psy12089 172 LPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQ 229 (467)
Q Consensus 172 i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~ 229 (467)
+.++....++..|..-++++.. ..+|++.||++|+. |.=.||-+.-+|+..+..
T Consensus 151 ~k~l~~~l~k~l~~gk~l~v~~--~vdPSI~GGliVei--GdK~vDmSI~tr~q~l~~ 204 (210)
T KOG1662|consen 151 LKQLEKALQKILGGGKKLKVEN--KVDPSIIGGLIVEI--GDKYVDMSIKTRLQKLNK 204 (210)
T ss_pred HHHHHHHHHHHhcCCceEEEEe--ecChhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence 3344444444444443455543 34678999999987 567899999999987765
No 123
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=79.35 E-value=21 Score=30.79 Aligned_cols=38 Identities=29% Similarity=0.247 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy12089 40 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKI 77 (467)
Q Consensus 40 ~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I 77 (467)
....+.+|+..+.+|...|.++++..+..++......+
T Consensus 56 ~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~ 93 (132)
T PF00430_consen 56 YEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEA 93 (132)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888777666665554333
No 124
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=79.08 E-value=51 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.192 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRL 291 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~i 291 (467)
...-+.+|+.++.+|+..|.++++.....+
T Consensus 63 ~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~ 92 (161)
T COG0711 63 YEQELEEAREQASEIIEQAKKEAEQIAEEI 92 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888888887644433
No 125
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=77.94 E-value=48 Score=29.13 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=37.5
Q ss_pred EEeccHHHHHHHHHHhchHHHHHHhccCCCCcccccc--hhHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Q psy12089 215 KISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSD--ADVQKQIKH-------------MMAFIEQEANEKAEEIDAK 279 (467)
Q Consensus 215 ~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r~~~~d--~~~~~~l~k-------------m~~~I~~EA~ekA~eI~~~ 279 (467)
.+|.||=--+ ..+=-++--+...||++ -+.+|+. ..+...++. =.+..+++|+.++.+|+..
T Consensus 3 ~~~~t~~~~~-i~flil~~ll~~~l~~p--i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~ 79 (140)
T PRK07353 3 DFDATLPLMA-VQFVLLTFILNALFYKP--VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAE 79 (140)
T ss_pred ccchhHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665544 23335566677777874 3334432 333333322 2234455555555555555
Q ss_pred HHHHHHHHHhHHHH
Q psy12089 280 AEEEFNIEKGRLVQ 293 (467)
Q Consensus 280 A~eea~~ek~~iv~ 293 (467)
|..+++.++..++.
T Consensus 80 a~~~a~~~~~~~~~ 93 (140)
T PRK07353 80 AEAEADKLAAEALA 93 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444433
No 126
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=77.75 E-value=65 Score=30.52 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy12089 329 ALKVREDHVRNVLDEARKRLGEV 351 (467)
Q Consensus 329 ~L~ar~e~i~~v~~~a~~~L~~l 351 (467)
.+..+..-++.+.......|-++
T Consensus 121 ~l~~~~~e~~~~~~~~~~~Le~i 143 (201)
T PF12072_consen 121 ELEEREEELEELIEEQQQELEEI 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443
No 127
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=76.07 E-value=23 Score=30.61 Aligned_cols=31 Identities=35% Similarity=0.317 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12089 263 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQ 293 (467)
Q Consensus 263 ~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~ 293 (467)
+..+.+|+..+.+|+..|.++++..+..++.
T Consensus 57 ~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ 87 (132)
T PF00430_consen 57 EEKLAEAREEAQEIIEEAKEEAEKEKEEILA 87 (132)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444433
No 128
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=75.52 E-value=50 Score=29.45 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=6.9
Q ss_pred chHHHHHHhccC
Q psy12089 231 IIPDIRVAIFGR 242 (467)
Q Consensus 231 ~lp~I~~~LF~~ 242 (467)
++--+++.||||
T Consensus 20 l~~~l~kfl~kP 31 (141)
T PRK08476 20 LIVILNSWLYKP 31 (141)
T ss_pred HHHHHHHHHHHH
Confidence 344556667774
No 129
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=72.40 E-value=80 Score=29.07 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIME 79 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~ 79 (467)
...+.+|+.++.+|...|..+++.++..++.+.......
T Consensus 76 e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~ 114 (173)
T PRK13453 76 KQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANG 114 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888889999999999988888887766544433
No 130
>PRK12705 hypothetical protein; Provisional
Probab=72.40 E-value=1.5e+02 Score=32.32 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=28.0
Q ss_pred HhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy12089 24 NAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQH 72 (467)
Q Consensus 24 ~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ 72 (467)
+.++.+++- +-+.+.....-+|++++...+..++.+++..+..+-..
T Consensus 36 ~~~~~~a~~--~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 36 ERILQEAQK--EAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345533333 33455566777777777777777777776655554333
No 131
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=72.33 E-value=92 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.015 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQ 73 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~e 73 (467)
...+.+|+.++.+|...|.++++.+...++.+.
T Consensus 111 e~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a 143 (204)
T PRK09174 111 EQELAQARAKAHSIAQAAREAAKAKAEAERAAI 143 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888876655554443
No 132
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=71.39 E-value=82 Score=28.74 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12089 103 ARLKALKVREDHVRNVLDEA 122 (467)
Q Consensus 103 ~R~~~L~ar~e~l~~v~~~a 122 (467)
++..+-..|...+.+|-.++
T Consensus 105 A~~~Ie~Ek~~Al~elr~ev 124 (154)
T PRK06568 105 AIQLIQNQKSTASKELQDEF 124 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 133
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=70.23 E-value=64 Score=27.03 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy12089 331 KVREDHVRNVLDEARKRLGEVTKN 354 (467)
Q Consensus 331 ~ar~e~i~~v~~~a~~~L~~l~~~ 354 (467)
.........+..++..+|..+...
T Consensus 62 ~~~~~~~~~l~~et~~~i~~i~~~ 85 (105)
T PF03179_consen 62 GEAEQEAEELEKETEEKIEEIKKS 85 (105)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666543
No 134
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=67.34 E-value=1.1e+02 Score=28.83 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 258 IKHMMAFIEQEANEKAEEIDAKAEE 282 (467)
Q Consensus 258 l~km~~~I~~EA~ekA~eI~~~A~e 282 (467)
+.++-.....+|+.+|..|...|-+
T Consensus 171 ir~~eeeak~~A~~~Ar~Ii~~AiQ 195 (201)
T PF12072_consen 171 IRRIEEEAKEEADKKARRIIATAIQ 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443
No 135
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=62.49 E-value=92 Score=26.05 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12089 259 KHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRK 306 (467)
Q Consensus 259 ~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k 306 (467)
++-...|..+|+.....+...|..+|+. .+..-+......|...
T Consensus 13 E~eA~~iV~~Ar~~r~~~lk~Ak~eA~~----ei~~~r~~~e~~~~~~ 56 (105)
T PF03179_consen 13 EKEAQEIVEEARKEREQRLKQAKEEAEK----EIEEFRAEAEEEFKEK 56 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4445667777777777777777777765 3333344444444433
No 136
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=56.09 E-value=1.6e+02 Score=26.81 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy12089 41 AFIEQEANEKAEEIDAKAEEEFNIEKGRLVQH 72 (467)
Q Consensus 41 ~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ 72 (467)
.--+.+|+.++.+|+..|..+++.....+..+
T Consensus 64 ~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~ 95 (161)
T COG0711 64 EQELEEAREQASEIIEQAKKEAEQIAEEIKAE 95 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999987766555433
No 137
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=53.93 E-value=1.4e+02 Score=25.57 Aligned_cols=38 Identities=32% Similarity=0.292 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy12089 262 MAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKI 299 (467)
Q Consensus 262 ~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I 299 (467)
-..|..+|.++|.+|+.+|+.++...+..+++.....+
T Consensus 30 ~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~ 67 (108)
T COG2811 30 AEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEA 67 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555555554444433
No 138
>PRK12705 hypothetical protein; Provisional
Probab=53.42 E-value=3.4e+02 Score=29.73 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 261 MMAFIEQEANEKAEEIDAKAEEEFNIEK 288 (467)
Q Consensus 261 m~~~I~~EA~ekA~eI~~~A~eea~~ek 288 (467)
+.....-+|++++...+..++++++..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~e~e~~~~~ 76 (508)
T PRK12705 49 KLEAALLEAKELLLRERNQQRQEARRER 76 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 139
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=49.63 E-value=1.6e+02 Score=26.25 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHH
Q psy12089 105 LKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLP 173 (467)
Q Consensus 105 ~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~ 173 (467)
..+-..+..++..+...+..-+..+.... |+.-+.+...+++..| ..++...++.
T Consensus 101 ~~l~~~~~~~~~~i~~~i~~~v~~~a~~~-------------g~~~Vl~~~~vly~~~-~~DIT~~Vi~ 155 (158)
T PF03938_consen 101 QQLQQEEQELLQPIQKKINKAVEEYAKEN-------------GYDLVLDKNAVLYADP-AYDITDEVIK 155 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------T-SEEEEGGGEEEE-T-TSE-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------CCeEEEeCCceEeeCC-CCChHHHHHH
Confidence 34445566666666666666666655432 2222333444777766 3455555554
No 140
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=49.14 E-value=2e+02 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 96 SSNMLNQARLKALKVREDHVRNVLDEA 122 (467)
Q Consensus 96 ~S~~~~~~R~~~L~ar~e~l~~v~~~a 122 (467)
.+.....++..+-..|+..+.++...+
T Consensus 96 ~~~~~~~a~~~I~~ek~~a~~el~~~~ 122 (159)
T PRK09173 96 VARRNKLAEQKIAQAETDAINAVRSSA 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544433
No 141
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=42.20 E-value=24 Score=24.87 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q psy12089 2 ALSDADVQKQIKHMMAFIEQE 22 (467)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (467)
+|.|+|||.-+--|++|+..+
T Consensus 19 ~l~DpdvqrgL~~ll~~lk~l 39 (42)
T PF07849_consen 19 ALRDPDVQRGLGFLLAFLKAL 39 (42)
T ss_pred HHcCHHHHHHHHHHHHHHHHH
Confidence 478999999999999888765
No 142
>PHA03065 Hypothetical protein; Provisional
Probab=39.73 E-value=5e+02 Score=27.70 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcChhHH-----HHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHH
Q psy12089 106 KALKVREDHVRNVLDEARKRLGEVTKNRDKY-----TQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQ 180 (467)
Q Consensus 106 ~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y-----~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~ 180 (467)
..|..-+.+.+++..+..-+|.+++ .| .+-|+.++.+++..+++.--+++|.--|.+.| +-..+ .++.
T Consensus 111 ~~ld~~d~~yEEikt~~~lrI~Kl~----F~~fLa~~~nlk~~l~~~L~~~~~~v~I~yCdgvDAEfv--MC~~a-k~~a 183 (438)
T PHA03065 111 KNLDVDDEMYEEIKTDLELKIDKLS----FQLFLANSNNLKRLLESALARLGENVEIVYCDGVDAEFV--MCARA-KELA 183 (438)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHH----HHHHHcchhhHHHHHHHHHHhccCCceEEEECCcchhHH--HHHHH-HHHH
Confidence 5566677777888777777777753 11 34588899999999988878999999998776 23333 3344
Q ss_pred HHhCC-ceeEEecCC
Q psy12089 181 DVAGK-EVNLKLDND 194 (467)
Q Consensus 181 ~~~g~-~~~i~i~~~ 194 (467)
..+|. +.=|+.|.+
T Consensus 184 ~~~g~WPl~iStDQD 198 (438)
T PHA03065 184 ATTGEWPLLISTDQD 198 (438)
T ss_pred hhcCCCceEEeccCC
Confidence 45564 444555554
No 143
>KOG4702|consensus
Probab=35.21 E-value=1.7e+02 Score=23.06 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=52.7
Q ss_pred CccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccCCCCcccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy12089 202 TGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQE-ANEKAEEIDAKA 280 (467)
Q Consensus 202 ~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r~~~~d~~~~~~l~km~~~I~~E-A~ekA~eI~~~A 280 (467)
.||++|.. |+..+--||-.-+ .|=-..|++-+.--. .-+.-++.++--++.+..-++|+.. |.+.|..|+..+
T Consensus 1 MG~wkLE~--~rm~~y~tFPV~~--FwlfNQpe~Fee~v~--~~krel~ppe~~~~~EE~~~~lRe~~a~~eaK~~R~a~ 74 (77)
T KOG4702|consen 1 MGGWKLET--GRMLLYITFPVGA--FWLFNQPEIFEEFVR--GYKRELSPPEATKRKEEYENFLREQMAFEEAKKIRGAA 74 (77)
T ss_pred CCceeeeh--hhhhhhhhhhHHH--HHHccChHHHHHHHH--hccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 48898887 4777777776543 666677776554322 4456777777777888889999888 888888887655
Q ss_pred H
Q psy12089 281 E 281 (467)
Q Consensus 281 ~ 281 (467)
+
T Consensus 75 ~ 75 (77)
T KOG4702|consen 75 A 75 (77)
T ss_pred h
Confidence 3
No 144
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=34.91 E-value=65 Score=31.20 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 51 AEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQ 91 (467)
Q Consensus 51 a~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~ 91 (467)
..+|..+ +++-+..|..++.+.+..|...|.....+.+..
T Consensus 122 ~~~i~ek-D~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~ 161 (225)
T PF01086_consen 122 DKRIEEK-DAEEEEKKEEIKEKAKKELDDFYENRNEKKEKN 161 (225)
T ss_dssp TTTSTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 333445677899999999999998876666654
No 145
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=34.54 E-value=1.3e+02 Score=25.82 Aligned_cols=39 Identities=31% Similarity=0.375 Sum_probs=33.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 248 ALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNI 286 (467)
Q Consensus 248 ~~~d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ 286 (467)
.++|.++...++.+-+.+..+|+.+|..+..+=..|...
T Consensus 10 ~~~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkR 48 (109)
T PHA02571 10 ELTDEEVEELLSELQARNEAEAEKKAAKILKKNRREIKR 48 (109)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 467778888899999999999999999999888777665
No 146
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.16 E-value=5.2e+02 Score=26.37 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 302 YYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLD 342 (467)
Q Consensus 302 ~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar~e~i~~v~~ 342 (467)
++....++...+|+...-.....-|......|+++++++-.
T Consensus 149 ~~~~~E~~~~~~rr~~~~~~e~ee~~~~~~~~~~~ld~L~~ 189 (309)
T TIGR00570 149 EALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDELET 189 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333444433445555666677778888887754
No 147
>PF14695 LINES_C: Lines C-terminus
Probab=31.39 E-value=35 Score=23.76 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=16.6
Q ss_pred HHHHHHhhhHHHHHhccCCCCC
Q psy12089 446 LELIAQQIIPDIRVAIFGRNPN 467 (467)
Q Consensus 446 L~~~~~~~~p~I~~~LFg~n~~ 467 (467)
|.+....+..-.++.|||.||+
T Consensus 6 l~~L~~aI~rL~~k~LFPYN~~ 27 (39)
T PF14695_consen 6 LIRLRLAIERLVRKNLFPYNPS 27 (39)
T ss_pred HHHHHHHHHHHHHCCCCCCChH
Confidence 4455566677788999999985
No 148
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=29.30 E-value=3.6e+02 Score=26.18 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHHHH
Q psy12089 29 DADVQKQIKHMMAF 42 (467)
Q Consensus 29 d~~~~~~i~~m~~~ 42 (467)
+.++++-++.|+..
T Consensus 148 p~~v~~a~~~~~~a 161 (261)
T TIGR01933 148 PEEVKEAFDDVIIA 161 (261)
T ss_pred CHHHHHHHHHHHHH
Confidence 34566556665553
No 149
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=28.73 E-value=1.9e+02 Score=24.85 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=34.3
Q ss_pred hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 25 AIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIE 65 (467)
Q Consensus 25 ~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~e 65 (467)
.-++|.++..-++.+-+.+..+|..+|..+..+=..|.++-
T Consensus 9 ~~~~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL 49 (109)
T PHA02571 9 EELTDEEVEELLSELQARNEAEAEKKAAKILKKNRREIKRL 49 (109)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34677888888999999999999999999998887777553
No 150
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=24.56 E-value=6.4e+02 Score=24.32 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred cccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceE-EeccHHHHHHHHHHhchHHHHHHhc
Q psy12089 162 EVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIK-ISNTLEARLELIAQQIIPDIRVAIF 240 (467)
Q Consensus 162 ~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~-vdNTle~RL~~~~~~~lp~I~~~LF 240 (467)
+.-...++.++..+......... .--||+++... .+. ++.+|+.-++...+.+.-+---.+|
T Consensus 91 ~~~~~~l~~l~~~l~~~~~~~~~---------------~~~d~~~l~~~--~~~~~~~~~~~e~e~~~e~lv~~s~g~i~ 153 (229)
T PF11101_consen 91 SNARDRLKQLMDQLKQQVDRRFY---------------QRGDGFVLHAQ--AFSQLDEFFDQEFEQAIEQLVQESMGSIL 153 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhe---------------eCCCcEEEcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666665555543322 12356777754 444 6777777777777666655555555
Q ss_pred cCCCCccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 241 GRNPNLMA-----LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNI 286 (467)
Q Consensus 241 ~~~~~r~~-----~~d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ 286 (467)
....+-|. ..-.....++..|-..|..+-+.++.++..+|++=+..
T Consensus 154 ~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~ 204 (229)
T PF11101_consen 154 QALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDS 204 (229)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444442 22357788899999999999999999999999999875
No 151
>PF10944 DUF2630: Protein of unknown function (DUF2630); InterPro: IPR020311 This entry contains proteins with no known function.
Probab=23.42 E-value=99 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHhhhHHHHHhccCCCCC
Q psy12089 441 TLEARLELIAQQIIPDIRVAIFGRNPN 467 (467)
Q Consensus 441 Tle~RL~~~~~~~~p~I~~~LFg~n~~ 467 (467)
.++..|++||+-+..-=.+.=||.||.
T Consensus 40 ~lE~~LDQCWDLLRqRRA~r~~G~dPd 66 (81)
T PF10944_consen 40 QLEVELDQCWDLLRQRRARREAGEDPD 66 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 578899999999998888888999884
No 152
>PRK10780 periplasmic chaperone; Provisional
Probab=23.24 E-value=5.6e+02 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHH
Q psy12089 107 ALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPN 174 (467)
Q Consensus 107 ~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~ 174 (467)
.-..+++..+.++..+.+-+..+.... .|.-+| +...++|.+|. .++...++..
T Consensus 110 ~~~~~~e~~~~i~~ki~~ai~~vak~~-gy~~Vl------------d~~~v~Y~~~~-~DIT~~Vik~ 163 (165)
T PRK10780 110 RRRRSNEERNKILTRIQTAVKSVANKQ-GYDLVV------------DANAVAYNSSD-KDITADVLKQ 163 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeEEE------------eCCceeeeCCC-CCchHHHHHh
Confidence 334566777788888888887776654 465433 22347777766 5666666543
No 153
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=22.29 E-value=60 Score=29.70 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=41.1
Q ss_pred CCCceEEEeccccHHHHHhhHHHHHHHHHHHhCC------cceEEecCCCCCCCCCCCcEEEEecCCcEEEeccH
Q psy12089 374 LEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGK------EVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTL 442 (467)
Q Consensus 374 ~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~------~~~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTl 442 (467)
.+.++-|.+.++|...+..+|.+....-...... =+...|+. .+.++.|||.+...+| +..++|
T Consensus 36 ~p~DIDI~~D~~d~e~i~~il~~~~~~~~~~~~~~~~ts~F~e~~I~g---v~Vdvmgg~~i~~~~g--~~~~~~ 105 (156)
T cd07749 36 EPHDIDIQTDNEGAYEIERIFHEFVNTEVRFSESEGIRSHFGELQIDG---IKVEIMGDVQKRLEDG--WWETPV 105 (156)
T ss_pred CCCcceEEEchhhHHHHHHHHHHhccCCCccCCCCceeeeeeEEEECC---EEEEEeeceEEecCCC--EEeccc
Confidence 3567999999999999999987653221100000 02344553 4567899999999877 444554
No 154
>PF07052 Hep_59: Hepatocellular carcinoma-associated antigen 59; InterPro: IPR010756 This family represents a conserved region approximately 100 residues long within mammalian hepatocellular carcinoma-associated antigen 59 and similar proteins. Family members are found in a variety of eukaryotes, mainly as hypothetical proteins.
Probab=22.02 E-value=64 Score=27.26 Aligned_cols=14 Identities=50% Similarity=0.707 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHh
Q psy12089 12 IKHMMAFIEQEANA 25 (467)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (467)
=+|||+||+..-.+
T Consensus 13 DkhM~~YIE~eL~k 26 (104)
T PF07052_consen 13 DKHMMKYIEEELAK 26 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 36888888876554
No 155
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=21.34 E-value=1.2e+02 Score=27.47 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=26.8
Q ss_pred cCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCC
Q psy12089 151 LLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGK 185 (467)
Q Consensus 151 l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~ 185 (467)
+|...++|.|...+ ..|..++.++...|++..++
T Consensus 7 fg~~~vvVPC~dg~-~tV~~L~~~A~~RY~K~~~~ 40 (145)
T PF12053_consen 7 FGRTRVVVPCGDGQ-LTVRDLIQQALRRYRKAKEK 40 (145)
T ss_dssp ETTEEEEEEESSS----HHHHHHHHHHHHHHHTT-
T ss_pred eCCeEEEEEeCCCC-ccHHHHHHHHhHhHHHhhcc
Confidence 67788999998888 67899999999999988775
No 156
>KOG0066|consensus
Probab=21.20 E-value=1.9e+02 Score=31.26 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=26.6
Q ss_pred HHhcCCCcEEEEeccc---cHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEE
Q psy12089 148 LLQLLEPNVLIRSREV---DKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKI 216 (467)
Q Consensus 148 ~~~l~e~~vvv~~~~~---D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~v 216 (467)
-..|++|+|+|.--|. |..-+. .+.++.++| -||||+.|+|.+.++
T Consensus 717 eLal~~PDvlILDEPTNNLDIESID-ALaEAIney----------------------~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESID-ALAEAINEY----------------------NGGVIMVSHDERLIV 765 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHH-HHHHHHHhc----------------------cCcEEEEecccceee
Confidence 3445788877765443 333222 345555555 478888888777654
No 157
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=21.13 E-value=93 Score=27.13 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=48.8
Q ss_pred CccEEEEecCCceEEeccHHHHHHHHHHhchHHHH---HHhccCCCCcccccchhHHHHHHHHHHHH
Q psy12089 202 TGGIELLAQRGKIKISNTLEARLELIAQQIIPDIR---VAIFGRNPNLMALSDADVQKQIKHMMAFI 265 (467)
Q Consensus 202 ~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~---~~LF~~~~~r~~~~d~~~~~~l~km~~~I 265 (467)
-=||+++..=|+=++-|.+--+|+.++..+.+.+. .++|-.-+.-...+-.+++++|.++...+
T Consensus 49 R~G~~VsKKvG~AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k~ 115 (122)
T PRK03459 49 RFGLVVSKAVGNAVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGKL 115 (122)
T ss_pred EEEEEEeeeccchhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHHh
Confidence 44999999899999999999999999999988873 45554434444455678888888776643
No 158
>KOG2880|consensus
Probab=20.53 E-value=8.2e+02 Score=25.58 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy12089 13 KHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR 74 (467)
Q Consensus 13 ~~~~~~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek 74 (467)
+-|--||+.+-++-== .-+..+..-+...++.+|..+++++..+--..|+.++..+.+..+
T Consensus 60 ry~tLfiEkipkHrDy-~s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~ 120 (424)
T KOG2880|consen 60 RYITLFIEKIPKHRDY-RSVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKK 120 (424)
T ss_pred HHHHHHHHhcccCcch-hhhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3444566655554311 245556667777889999999999999999999999888876554
No 159
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=20.35 E-value=1.3e+03 Score=26.25 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=34.3
Q ss_pred cCCceEEeccHHHHHHHHHHhchHHHHHHhccCCCCcccccchhHHHHHHHHHHHHH
Q psy12089 210 QRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIE 266 (467)
Q Consensus 210 ~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r~~~~d~~~~~~l~km~~~I~ 266 (467)
.+|.+.+|.+ .|+.+.... |+--..||+..++-....+.-+-.+|..+++.+.
T Consensus 540 ~dG~L~lDe~---KL~~AL~~n-p~~V~~lF~~~~~g~~~~~~Gla~~l~~~l~~~t 592 (661)
T PRK06664 540 QDGYLELDEK---KLDEVLKEN-PDSVRELFAFDSNGDAVMDNGVAKMLLEYLSPYT 592 (661)
T ss_pred CCccEEEcHH---HHHHHHHhC-HHHHHHHhcCCCcccccccCcHHHHHHHHHHHHH
Confidence 5799999864 787788887 5556677765444333334556666666665544
No 160
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=20.10 E-value=1.8e+02 Score=23.19 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=12.4
Q ss_pred cEEEEeccccHHHHHhh
Q psy12089 155 NVLIRSREVDKDIVNAV 171 (467)
Q Consensus 155 ~vvv~~~~~D~~~v~~~ 171 (467)
.++|+|+|....-|...
T Consensus 7 s~vV~~~p~~~~~v~~~ 23 (79)
T PF03927_consen 7 SLVVHARPERLEEVAEA 23 (79)
T ss_dssp EEEEEE-CCCHHHHHHH
T ss_pred EEEEEECchhHHHHHHH
Confidence 47999999987776654
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.04 E-value=2.4e+02 Score=21.74 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=9.1
Q ss_pred CCCCCcEEEEe
Q psy12089 421 VDTTGGIELLA 431 (467)
Q Consensus 421 ~~~~GGvvl~s 431 (467)
....||+|+.+
T Consensus 34 ~~~~GGvV~eD 44 (62)
T PF15513_consen 34 DRLTGGVVMED 44 (62)
T ss_pred CeEeccEEEeC
Confidence 45789999987
Done!