Query psy12089
Match_columns 467
No_of_seqs 277 out of 848
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:24:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 5.9E-54 2E-58 414.9 30.9 226 25-250 6-233 (233)
2 4efa_E V-type proton ATPase su 100.0 1.9E-49 6.4E-54 383.4 31.5 223 245-467 4-228 (233)
3 3v6i_A V-type ATP synthase sub 100.0 5.3E-31 1.8E-35 246.0 24.2 171 42-241 17-187 (187)
4 3v6i_A V-type ATP synthase sub 100.0 3.4E-30 1.2E-34 240.6 25.3 182 260-463 2-187 (187)
5 2dm9_A V-type ATP synthase sub 100.0 2.6E-30 8.7E-35 242.0 12.7 198 16-241 1-198 (198)
6 2dm9_A V-type ATP synthase sub 99.9 8.8E-28 3E-32 224.8 11.3 188 254-463 11-198 (198)
7 3lg8_A A-type ATP synthase sub 99.9 1.1E-26 3.9E-31 196.9 -2.8 102 135-240 4-106 (106)
8 3lg8_A A-type ATP synthase sub 99.9 1.9E-25 6.6E-30 189.3 -2.0 102 357-462 4-106 (106)
9 2kk7_A V-type ATP synthase sub 96.2 0.0035 1.2E-07 45.4 3.4 42 19-66 8-49 (52)
10 2kk7_A V-type ATP synthase sub 95.7 0.033 1.1E-06 40.2 6.9 38 257-298 7-44 (52)
11 1l2p_A ATP synthase B chain; a 86.2 3.2 0.00011 30.3 7.6 36 42-77 13-48 (61)
12 1l2p_A ATP synthase B chain; a 85.6 7.8 0.00027 28.1 9.4 31 43-73 3-33 (61)
13 2wss_S ATP synthase subunit O, 74.7 0.19 6.5E-06 45.9 -3.5 33 419-453 154-186 (190)
14 2wss_S ATP synthase subunit O, 64.8 0.43 1.5E-05 43.5 -3.4 32 198-231 155-186 (190)
15 2k6i_A Uncharacterized protein 55.1 24 0.00083 25.5 5.2 18 268-285 23-40 (56)
16 2k6i_A Uncharacterized protein 49.4 29 0.00099 25.1 4.8 21 42-62 30-50 (56)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=5.9e-54 Score=414.88 Aligned_cols=226 Identities=31% Similarity=0.560 Sum_probs=210.6
Q ss_pred hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy12089 25 AIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQAR 104 (467)
Q Consensus 25 ~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R 104 (467)
+.|+|++|++||++|++||++||++||++|..+|++||+++|.+++++++.+|.+.|+++++++++++++..|++.|++|
T Consensus 6 ~al~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR 85 (233)
T 4efa_E 6 TALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMR 85 (233)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhC
Q psy12089 105 LKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAG 184 (467)
Q Consensus 105 ~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g 184 (467)
+.+|.+|+++|++||+.|.++|.+++.+++.|+.+|.+||.+|+..|++|+++|+|+|.|..+|+++++++..+|+..+|
T Consensus 86 ~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~ 165 (233)
T 4efa_E 86 LKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQ 165 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999988
Q ss_pred Cce--eEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhccCCCCccccc
Q psy12089 185 KEV--NLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALS 250 (467)
Q Consensus 185 ~~~--~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~~~~~r~~~~ 250 (467)
..+ .+.++.++.+|++|+|||+|+|.||+|+||||||+||+++|++++|+||+.|||+||||+|||
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~r~f~d 233 (233)
T 4efa_E 166 RAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKTRKFFD 233 (233)
T ss_dssp TSCCCEEEECSSCCCTTTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC-------
T ss_pred CCCccccccccccCCcccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCCC
Confidence 754 566666666677899999999999999999999999999999999999999999999999986
No 2
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=1.9e-49 Score=383.41 Aligned_cols=223 Identities=32% Similarity=0.594 Sum_probs=211.3
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy12089 245 NLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQ 324 (467)
Q Consensus 245 ~r~~~~d~~~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~ 324 (467)
.-.+|||++|+++|++|++||++||++||++|..+|+++|+++|.+++++++.+|.+.|+++.++++.++++..|++.++
T Consensus 4 ~~~al~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~ 83 (233)
T 4efa_E 4 AITALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANK 83 (233)
T ss_dssp CBCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHH
Q psy12089 325 ARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDV 404 (467)
Q Consensus 325 aR~~~L~ar~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~ 404 (467)
+|+.+|.+|+++|++||+.|+++|.+++.++..|+++|.+||.+|+..+++++++|+|+|.|..+++.+++++..+|+..
T Consensus 84 aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~ 163 (233)
T 4efa_E 84 MRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEK 163 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hCCcc--eEEecCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccCCCCC
Q psy12089 405 AGKEV--NLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPN 467 (467)
Q Consensus 405 ~g~~~--~i~i~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg~n~~ 467 (467)
+|..+ .+.++..+..|++|.|||+|++.||+|+||||||+||+.++++++|+||+.|||+|||
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~ 228 (233)
T 4efa_E 164 AQRAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT 228 (233)
T ss_dssp TTTSCCCEEEECSSCCCTTTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred hCCCCccccccccccCCcccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence 88753 5666665666778999999999999999999999999999999999999999999998
No 3
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.98 E-value=5.3e-31 Score=246.04 Aligned_cols=171 Identities=20% Similarity=0.245 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDE 121 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~~S~~~~~~R~~~L~ar~e~l~~v~~~ 121 (467)
.|+.+|+.+|++|..+|+++++..+..+..+. .++......+..|.+.+++|+.+|.+|++++++||+.
T Consensus 17 ~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~-----------e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~ 85 (187)
T 3v6i_A 17 ALLQEAEAKAEAVKREAEEKAKALLQARERAL-----------EAQYRAALRRAESAGELLVATARTQARGEVLEEVRRR 85 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655444433332 3345555667899999999999999999999999999
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHHHHHHHHHhCCceeEEecCCCCCCCCC
Q psy12089 122 ARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDT 201 (467)
Q Consensus 122 a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~ 201 (467)
|+++|.+++.++ .|+++|.+||.+|+..+++|+++| |+|.|.++++.++++. |. +++ .|++|
T Consensus 86 a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~~--------~~----~~~----~~~~~ 147 (187)
T 3v6i_A 86 VREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARER--------GV----ELQ----AEPAL 147 (187)
T ss_dssp HHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHHH--------TC----EEE----ECTTC
T ss_pred HHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHhc--------Ce----eeC----CCCcc
Confidence 999999999884 699999999999999999999877 9999999999887642 42 333 25679
Q ss_pred CccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhcc
Q psy12089 202 TGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 241 (467)
Q Consensus 202 ~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~ 241 (467)
.|||+|++.||+|+|||||++||+.+|++++|+|++.|||
T Consensus 148 ~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg 187 (187)
T 3v6i_A 148 RLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187 (187)
T ss_dssp CSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998
No 4
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.97 E-value=3.4e-30 Score=240.56 Aligned_cols=182 Identities=18% Similarity=0.253 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12089 260 HMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLK---IMEYYDRKE-KQVELQKKIQSSNMLNQARLKALKVRED 335 (467)
Q Consensus 260 km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~---I~~~~~~k~-k~~~~~r~i~~S~a~~~aR~~~L~ar~e 335 (467)
|+...|..||+.+|++|..+|+++++. |+.+.+.+ +.....++. ++.........|++.+++|+.+|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a~~----I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKAEA----VKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777765 55544433 333333332 2233333445799999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEecC
Q psy12089 336 HVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDN 415 (467)
Q Consensus 336 ~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i~~ 415 (467)
++++||+.|+++|.+++.++ .|+++|.+||.+|+..+++++++| |+|.|.++++.++++ .|. +++
T Consensus 78 li~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~--------~~~----~~~- 142 (187)
T 3v6i_A 78 VLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE--------RGV----ELQ- 142 (187)
T ss_dssp HHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH--------HTC----EEE-
T ss_pred HHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh--------cCe----eeC-
Confidence 99999999999999999884 699999999999999999998877 999999999987654 132 333
Q ss_pred CCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccC
Q psy12089 416 DQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463 (467)
Q Consensus 416 ~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg 463 (467)
.|++|.|||+|++.||+|+|||||++||+.+|++++|.|++.|||
T Consensus 143 ---~~~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg 187 (187)
T 3v6i_A 143 ---AEPALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187 (187)
T ss_dssp ---ECTTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---CCCcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence 356899999999999999999999999999999999999999998
No 5
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.97 E-value=2.6e-30 Score=242.03 Aligned_cols=198 Identities=27% Similarity=0.443 Sum_probs=108.1
Q ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 16 MAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQ 95 (467)
Q Consensus 16 ~~~~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I~~~~e~k~k~~e~~k~i~ 95 (467)
|.-++++++.|+.+++-..+ +|+++|+++|++|..+|+++|+.++.+++++.. ++++..+++.
T Consensus 1 M~~le~l~~~il~~A~~~a~------~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~ 63 (198)
T 2dm9_A 1 MNGAELIIQEINKEAERKIE------YILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRI 63 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 66789999999998877777 999999999999999999999999999987773 4566677788
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhhHHHH
Q psy12089 96 SSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNV 175 (467)
Q Consensus 96 ~S~~~~~~R~~~L~ar~e~l~~v~~~a~e~L~~~~~~~~~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~i~~~ 175 (467)
.|.+.++.|+.++.+|+++++.+|..|.+.|.+++ ++.|+.+|.+||.+++..++++.++|+|+|.|.++++.+++.+
T Consensus 64 ~s~~~~~~r~~~l~~~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~ 141 (198)
T 2dm9_A 64 IANARLEVRRKRLAIQEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEI 141 (198)
T ss_dssp -----------------CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 3479999999999999998889999999999999999999987
Q ss_pred HHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCceEEeccHHHHHHHHHHhchHHHHHHhcc
Q psy12089 176 AKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 241 (467)
Q Consensus 176 ~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~lp~I~~~LF~ 241 (467)
...|. ++++++++ |+.+.|||+|.+.+|+|.|||||++||+.+++.++|.|++.|||
T Consensus 142 ~~~~~-----~~~l~i~~----~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~ 198 (198)
T 2dm9_A 142 KSELG-----DVSIELGE----TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198 (198)
T ss_dssp HHHCT-----TCEEEECC----CCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHhc-----CceEEECC----CCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence 77664 45777754 56799999999999999999999999999999999999999997
No 6
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.95 E-value=8.8e-28 Score=224.76 Aligned_cols=188 Identities=26% Similarity=0.465 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12089 254 VQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVR 333 (467)
Q Consensus 254 ~~~~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~I~~~~~~k~k~~~~~r~i~~S~a~~~aR~~~L~ar 333 (467)
+.++-+.+.++|+++|+++|++|..+|+++|+.++.++++++... ++..++.+.|.+.++.|+.++.+|
T Consensus 11 il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e-----------~~~~~~~~~s~~~~~~r~~~l~~~ 79 (198)
T 2dm9_A 11 INKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQ-----------AELEKQRIIANARLEVRRKRLAIQ 79 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888999999999999988888888777666543 333444557999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhhHHHHHHHHHHHhCCcceEEe
Q psy12089 334 EDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKL 413 (467)
Q Consensus 334 ~e~i~~v~~~a~~~L~~l~~~~~~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~~~~~~~~~~~~~g~~~~i~i 413 (467)
+++++.+|..|...|.+++ ++.|+++|.+||.+++..+++++++|+|+|.|.+.+...++.+...|. ++++++
T Consensus 80 ~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~-----~~~l~i 152 (198)
T 2dm9_A 80 EEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG-----DVSIEL 152 (198)
T ss_dssp -CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT-----TCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc-----CceEEE
Confidence 9999999999999999976 347999999999999998888899999999999999999888766653 467787
Q ss_pred cCCCCCCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhhhHHHHHhccC
Q psy12089 414 DNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFG 463 (467)
Q Consensus 414 ~~~~~~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~~p~I~~~LFg 463 (467)
++ |..+.|||+|.+.+|+|.|||||++||+.+++.+.|.|++.|||
T Consensus 153 ~~----~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~ 198 (198)
T 2dm9_A 153 GE----TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198 (198)
T ss_dssp CC----CCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CC----CCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence 63 66899999999999999999999999999999999999999997
No 7
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=1.1e-26 Score=196.86 Aligned_cols=102 Identities=26% Similarity=0.378 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeccccHHHHHhh-HHHHHHHHHHHhCCceeEEecCCCCCCCCCCccEEEEecCCc
Q psy12089 135 KYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAV-LPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGK 213 (467)
Q Consensus 135 ~Y~~lL~~Li~q~~~~l~e~~vvv~~~~~D~~~v~~~-i~~~~~~~~~~~g~~~~i~i~~~~~l~~~~~GGvvl~s~dG~ 213 (467)
.|+++|++||.||+..+++|+++|+||++|.++|++. ++++.++|++++|+++++++++ |.+|+|||++++.||+
T Consensus 4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~~~v~~~~----~~~~~GGvil~s~dg~ 79 (106)
T 3lg8_A 4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKVTVLKKGE----PVDIAGGCIIETADGL 79 (106)
T ss_dssp STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSCCCCCCCC----CCSSSCBCBCSSCSCB
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCeEEEEeCC----CccccccEEEEeCCCC
Confidence 6999999999999999999999999999999999999 9999999999999998888864 6789999999999999
Q ss_pred eEEeccHHHHHHHHHHhchHHHHHHhc
Q psy12089 214 IKISNTLEARLELIAQQIIPDIRVAIF 240 (467)
Q Consensus 214 I~vdNTle~RL~~~~~~~lp~I~~~LF 240 (467)
|+||||||+||++++++++|+|++.||
T Consensus 80 I~vdNTle~rL~~l~~~~~~eI~~~LF 106 (106)
T 3lg8_A 80 KSLDNSLEAIFNRNLNVIRARITEKLF 106 (106)
T ss_dssp CCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999
No 8
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.9e-25 Score=189.31 Aligned_cols=102 Identities=26% Similarity=0.366 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHhh-HHHHHHHHHHHhCCcceEEecCCCCCCCCCCCcEEEEecCCc
Q psy12089 357 KYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAV-LPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGK 435 (467)
Q Consensus 357 ~Y~~~L~~Li~e~~~~l~~~~~~I~~~~~D~~~v~~~-~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~GGvvl~s~dG~ 435 (467)
+|+++|++||.+|+..+++++++|+||++|.+++++. ++++.++|++++|++++|+++ .|.+|+|||++++.||+
T Consensus 4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~~~v~~~----~~~~~~GGvil~s~dg~ 79 (106)
T 3lg8_A 4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKVTVLKKG----EPVDIAGGCIIETADGL 79 (106)
T ss_dssp STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSCCCCCCC----CCCSSSCBCBCSSCSCB
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCeEEEEeC----CCccccccEEEEeCCCC
Confidence 6999999999999999999999999999999999999 999999999999999888876 36799999999999999
Q ss_pred EEEeccHHHHHHHHHHhhhHHHHHhcc
Q psy12089 436 IKISNTLEARLELIAQQIIPDIRVAIF 462 (467)
Q Consensus 436 I~vdnTle~RL~~~~~~~~p~I~~~LF 462 (467)
|+||||||+||++++++++|+|++.||
T Consensus 80 I~vdNTle~rL~~l~~~~~~eI~~~LF 106 (106)
T 3lg8_A 80 KSLDNSLEAIFNRNLNVIRARITEKLF 106 (106)
T ss_dssp CCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=96.17 E-value=0.0035 Score=45.43 Aligned_cols=42 Identities=31% Similarity=0.318 Sum_probs=28.4
Q ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12089 19 IEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEK 66 (467)
Q Consensus 19 ~~~~~~~~~~d~~~~~~i~~m~~~I~~EA~eka~eI~~~Aeee~~~ek 66 (467)
+++++++|+++++.+.+ .|+.+|+.+|++|...|+.+++..+
T Consensus 8 le~i~~kI~~eA~~eA~------~Il~eA~~eA~~Ii~eA~~~Ae~~~ 49 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEAN------KIISEAEAEKAKILEKAKEEAEKRK 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777766666666 6777777777777777777665443
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=95.73 E-value=0.033 Score=40.24 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy12089 257 QIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLK 298 (467)
Q Consensus 257 ~l~km~~~I~~EA~ekA~eI~~~A~eea~~ek~~iv~~e~~~ 298 (467)
-|+++++.|+.+|+.+|+.|..+|+.+++. |+.....+
T Consensus 7 gle~i~~kI~~eA~~eA~~Il~eA~~eA~~----Ii~eA~~~ 44 (52)
T 2kk7_A 7 GVDKIKSKILDDAKAEANKIISEAEAEKAK----ILEKAKEE 44 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 378999999999999999999999999986 66555433
No 11
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=86.23 E-value=3.2 Score=30.26 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKI 77 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~~~ek~~iv~~ek~~I 77 (467)
.|+.+|+..++.|...+..++..+-.+++.+....|
T Consensus 13 ~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~ei 48 (61)
T 1l2p_A 13 VIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEI 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 12
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=85.56 E-value=7.8 Score=28.11 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy12089 43 IEQEANEKAEEIDAKAEEEFNIEKGRLVQHQ 73 (467)
Q Consensus 43 I~~EA~eka~eI~~~Aeee~~~ek~~iv~~e 73 (467)
.+.+|+.++.+|+..|..+++.....++...
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A 33 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEA 33 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766555555444
No 13
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=74.68 E-value=0.19 Score=45.95 Aligned_cols=33 Identities=9% Similarity=0.318 Sum_probs=15.4
Q ss_pred CCCCCCCcEEEEecCCcEEEeccHHHHHHHHHHhh
Q psy12089 419 LPVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 453 (467)
Q Consensus 419 ~~~~~~GGvvl~s~dG~I~vdnTle~RL~~~~~~~ 453 (467)
..++++|||+|.- |.-++|.|+.++|+++...+
T Consensus 154 vDpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 154 IDPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp -----------------CCTTTTTTTTTTTTCTTT
T ss_pred EChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 3457999999999 88999999999998776655
No 14
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=64.76 E-value=0.43 Score=43.51 Aligned_cols=32 Identities=9% Similarity=0.298 Sum_probs=15.2
Q ss_pred CCCCCccEEEEecCCceEEeccHHHHHHHHHHhc
Q psy12089 198 PVDTTGGIELLAQRGKIKISNTLEARLELIAQQI 231 (467)
Q Consensus 198 ~~~~~GGvvl~s~dG~I~vdNTle~RL~~~~~~~ 231 (467)
+|+++|||+|.- |.-++|.|+.++|+.+...+
T Consensus 155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp ----------------CCTTTTTTTTTTTTCTTT
T ss_pred ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 468999999998 57899999999998776654
No 15
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=55.08 E-value=24 Score=25.51 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12089 268 EANEKAEEIDAKAEEEFN 285 (467)
Q Consensus 268 EA~ekA~eI~~~A~eea~ 285 (467)
+|+.+|++|..+|.++++
T Consensus 23 eAE~~A~~iVeeA~~ea~ 40 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAE 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555554
No 16
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=49.37 E-value=29 Score=25.10 Aligned_cols=21 Identities=43% Similarity=0.379 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12089 42 FIEQEANEKAEEIDAKAEEEF 62 (467)
Q Consensus 42 ~I~~EA~eka~eI~~~Aeee~ 62 (467)
.|..+|++++++|...|.+++
T Consensus 30 ~iVeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 30 KEIEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555
Done!