RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12089
(467 letters)
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 182 bits (463), Expect = 3e-55
Identities = 89/199 (44%), Positives = 136/199 (68%), Gaps = 4/199 (2%)
Query: 42 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLN 101
FI QEA EKAEEI A+AEEEF IEK V+ KI E Y++KEKQ E++K+I SN N
Sbjct: 1 FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60
Query: 102 QARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSR 161
+ARLK L RE+ + +V +EA++RL +++++D+Y L++ LI Q L++L EP V++RSR
Sbjct: 61 EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120
Query: 162 EVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLE 221
E D+++V + L + Y++ GK+ + + +D GG+ L + GKI++ NTLE
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGD----NIDCIGGVVLETEDGKIRVDNTLE 176
Query: 222 ARLELIAQQIIPDIRVAIF 240
ARLE + +Q++P+IR A+F
Sbjct: 177 ARLERVFEQLLPEIRKALF 195
Score = 182 bits (463), Expect = 3e-55
Identities = 89/199 (44%), Positives = 136/199 (68%), Gaps = 4/199 (2%)
Query: 264 FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLN 323
FI QEA EKAEEI A+AEEEF IEK V+ KI E Y++KEKQ E++K+I SN N
Sbjct: 1 FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60
Query: 324 QARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSR 383
+ARLK L RE+ + +V +EA++RL +++++D+Y L++ LI Q L++L EP V++RSR
Sbjct: 61 EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120
Query: 384 EVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLE 443
E D+++V + L + Y++ GK+ + + +D GG+ L + GKI++ NTLE
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGD----NIDCIGGVVLETEDGKIRVDNTLE 176
Query: 444 ARLELIAQQIIPDIRVAIF 462
ARLE + +Q++P+IR A+F
Sbjct: 177 ARLERVFEQLLPEIRKALF 195
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 82.0 bits (203), Expect = 4e-18
Identities = 52/209 (24%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 33 QKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQK 92
+++ ++ I +EA E+AEEI +A EE K + I E + EK+ E ++
Sbjct: 1 LMELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER 60
Query: 93 KIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLL 152
+ S+ L +AR K L+ +E+ + +V + ++L + + + + +++L+I+ L +LL
Sbjct: 61 QRIISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASDPEYES--LQELLIEALEKLL 118
Query: 153 EPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRG 212
+++ E DK + V LK+ + +D GG+ + ++ G
Sbjct: 119 GGELVVYLNEKDKAL--------------VEQILRELKIGVELGEGIDIIGGVVVESRDG 164
Query: 213 KIKISNTLEARLELIAQQIIPDIRVAIFG 241
KI++ NT E+ LE + ++++P+I +FG
Sbjct: 165 KIRLDNTFESILERVLEELLPEISEKLFG 193
Score = 82.0 bits (203), Expect = 4e-18
Identities = 52/209 (24%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 255 QKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQK 314
+++ ++ I +EA E+AEEI +A EE K + I E + EK+ E ++
Sbjct: 1 LMELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER 60
Query: 315 KIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLL 374
+ S+ L +AR K L+ +E+ + +V + ++L + + + + +++L+I+ L +LL
Sbjct: 61 QRIISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASDPEYES--LQELLIEALEKLL 118
Query: 375 EPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRG 434
+++ E DK + V LK+ + +D GG+ + ++ G
Sbjct: 119 GGELVVYLNEKDKAL--------------VEQILRELKIGVELGEGIDIIGGVVVESRDG 164
Query: 435 KIKISNTLEARLELIAQQIIPDIRVAIFG 463
KI++ NT E+ LE + ++++P+I +FG
Sbjct: 165 KIRLDNTFESILERVLEELLPEISEKLFG 193
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional.
Length = 198
Score = 60.5 bits (147), Expect = 1e-10
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 43 IEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQ 102
I +EA +K E I +A++E K + K + + Q EL+K+ +N +
Sbjct: 11 INREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLE 70
Query: 103 ARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSRE 162
R K L V+E+ + VL+ R+RL E+ + D+Y + ++ L + + +L E V++RS E
Sbjct: 71 VRRKRLAVQEELISEVLEAVRERLAELPE--DEYFETLKALTKEAVEELGEDKVVVRSNE 128
Query: 163 VDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEA 222
++++ L + DV E+ L P++T GG+ + + G I++ NT EA
Sbjct: 129 RTLKLIDSRLEEIRDELGDV---EIELGE------PIETIGGVIVETKDGTIRVDNTFEA 179
Query: 223 RLELIAQQIIPDIRVAIFG 241
R+E + ++ I A+FG
Sbjct: 180 RMERLESELRAKIAKALFG 198
Score = 60.5 bits (147), Expect = 1e-10
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 265 IEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQ 324
I +EA +K E I +A++E K + K + + Q EL+K+ +N +
Sbjct: 11 INREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLE 70
Query: 325 ARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSRE 384
R K L V+E+ + VL+ R+RL E+ + D+Y + ++ L + + +L E V++RS E
Sbjct: 71 VRRKRLAVQEELISEVLEAVRERLAELPE--DEYFETLKALTKEAVEELGEDKVVVRSNE 128
Query: 385 VDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEA 444
++++ L + DV E+ L P++T GG+ + + G I++ NT EA
Sbjct: 129 RTLKLIDSRLEEIRDELGDV---EIELGE------PIETIGGVIVETKDGTIRVDNTFEA 179
Query: 445 RLELIAQQIIPDIRVAIFG 463
R+E + ++ I A+FG
Sbjct: 180 RMERLESELRAKIAKALFG 198
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 36.7 bits (84), Expect = 0.032
Identities = 60/337 (17%), Positives = 135/337 (40%), Gaps = 13/337 (3%)
Query: 20 EQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIME 79
+ EA A D+A+ ++ ++EA +KA+ KAEE+ ++ + + K +
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
Query: 80 YYDRKE----KQVELQKKIQSSNMLNQARLKALKVRE-DHVRNVLDEARKRLGEVTKNRD 134
+ K E +KK + ++A+ KA + ++ D + +EA+K E K +
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK--AEEAKKKA 1466
Query: 135 KYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDND 194
+ + ++ + ++ E K A AK D A K+ D
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA-KKAEEAKKAD 1525
Query: 195 QFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQIIPDIRVAIFGRNPNLMALSDADV 254
+ + + + + K ++ L+ EL + A MAL A+
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 255 QKQIK-----HMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQ 309
K+ + +M E+E KAEE E + E+ + + ++ K+ + ++ ++
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Query: 310 VELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARK 346
+ ++++ + N+ + + + + +EA+K
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 35.5 bits (83), Expect = 0.061
Identities = 22/117 (18%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 19 IEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKG-------RLVQ 71
E+EA I ++A +K+ + + EA E+ ++ + E+E + RL+Q
Sbjct: 36 AEEEAKRILEEA--KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ 93
Query: 72 HQRL--KIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRL 126
+ + +E +++E+++E ++K + + + L+ +E+ + +++E + L
Sbjct: 94 KEENLDRKLELLEKREEELEKKEKE------LEQKQQELEKKEEELEELIEEQLQEL 144
Score = 30.9 bits (71), Expect = 1.4
Identities = 16/93 (17%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 265 IEQEANEKAEEIDAKAEEEFNIEKG-------RLVQHQRL--KIMEYYDRKEKQVELQKK 315
EA E+ ++ + E+E + RL+Q + + +E +++E+++E ++K
Sbjct: 58 ALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEK 117
Query: 316 IQSSNMLNQARLKALKVREDHVRNVLDEARKRL 348
+ + + L+ +E+ + +++E + L
Sbjct: 118 E------LEQKQQELEKKEEELEELIEEQLQEL 144
Score = 30.5 bits (70), Expect = 2.0
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 45 QEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDR-KEKQVELQKKIQSSNMLNQA 103
+EA E+A+ I +A++E K + ++E + + + E +K+++ Q
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIK-------KEALLEAKEEIHKLRNEFEKELRERRNELQK 86
Query: 104 RLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKL 143
K L +E+++ L+ KR E+ K + Q ++L
Sbjct: 87 LEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126
Score = 30.5 bits (70), Expect = 2.0
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 267 QEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDR-KEKQVELQKKIQSSNMLNQA 325
+EA E+A+ I +A++E K + ++E + + + E +K+++ Q
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIK-------KEALLEAKEEIHKLRNEFEKELRERRNELQK 86
Query: 326 RLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKL 365
K L +E+++ L+ KR E+ K + Q ++L
Sbjct: 87 LEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126
>gnl|CDD|238323 cd00578, L-fuc_L-ara-isomerases, L-fucose isomerase (FucIase) and
L-arabinose isomerase (AI) family; composed of FucIase,
AI and similar proteins. FucIase converts L-fucose, an
aldohexose, to its ketose form, which prepares it for
aldol cleavage (similar to the isomerization of glucose
in glycolysis). L-fucose (or 6-deoxy-L-galactose) is
found in various oligo- and polysaccharides in mammals,
bacteria and plants. AI catalyzes the isomerization of
L-arabinose to L-ribulose, the first reaction in its
conversion to D-xylulose-5-phosphate, an intermediate in
the pentose phosphate pathway, which allows L-arabinose
to be used as a carbon source. AI can also convert
D-galactose to D-tagatose at elevated temperatures in
the presence of divalent metal ions. D-tagatose, rarely
found in nature, is of commercial interest as a
low-calorie sugar substitute.
Length = 452
Score = 34.2 bits (79), Expect = 0.13
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 235 IRVAIFGRNPNLMALSDAD-VQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQ 293
+RV FG MA+++ D V QIK ++ E E ID ++EE
Sbjct: 161 LRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEVGELVRRIDEVSDEEVE-------- 212
Query: 294 HQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLK-ALK 331
+++E Y+ V K + ++ ARL AL+
Sbjct: 213 ----ELLEEYEENYDVVLDAKGLTDESLRKAARLYLALR 247
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 34.3 bits (79), Expect = 0.14
Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 17 AFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLK 76
A IEQ G DV+ Q+ +M+ E + I + E + L H + +
Sbjct: 844 AIIEQRTQDSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGE-ENTVKGQYSELQNHHKTE 902
Query: 77 IMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLG 127
+ ++ ++ Q+++ ++ + + E + +
Sbjct: 903 ALSQNNKYNEEKSAQERMPGAD------------SPEELMKRAKEYQDKHK 941
>gnl|CDD|187767 cd09636, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas1 is the most universal CRISPR system protein thought
to be involved in spacer integration; Cas1 is
metal-dependent deoxyribonuclease, also binds RNA; Shown
to possess a unique fold consisting of a N-terminal
beta-strand domain and a C-terminal alpha-helical
domain.
Length = 260
Score = 33.4 bits (77), Expect = 0.21
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 74 RLKIMEYYDRKEKQVELQKKIQSSNMLNQAR-LKALKVREDHVRNVLDEARKRLGEVTKN 132
R + Y K+++L ++ + NQA L+ L R + +++ L E L + N
Sbjct: 85 RRAQYKAYLNPAKRLKLAREFVEGKLANQAALLRYLTRRREDLKSELAEYIAELLKELDN 144
Query: 133 RDKYTQL--IE----KLIIQGLLQLLEPNVLI--RSREVDKDIVNAVL 172
+ +L IE + L QLL RSR KD NA+L
Sbjct: 145 ANSIEELMGIEGNAARAYYAALAQLLPDEFGFNGRSRRPPKDPFNALL 192
Score = 33.4 bits (77), Expect = 0.21
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 296 RLKIMEYYDRKEKQVELQKKIQSSNMLNQAR-LKALKVREDHVRNVLDEARKRLGEVTKN 354
R + Y K+++L ++ + NQA L+ L R + +++ L E L + N
Sbjct: 85 RRAQYKAYLNPAKRLKLAREFVEGKLANQAALLRYLTRRREDLKSELAEYIAELLKELDN 144
Query: 355 RDKYTQL--IE----KLIIQGLLQLLEPNVLI--RSREVDKDIVNAVL 394
+ +L IE + L QLL RSR KD NA+L
Sbjct: 145 ANSIEELMGIEGNAARAYYAALAQLLPDEFGFNGRSRRPPKDPFNALL 192
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 31.9 bits (73), Expect = 0.43
Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 32/211 (15%)
Query: 31 DVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVEL 90
D++ + + + I EA+E+AEEI A+AE + +I+E +E + E
Sbjct: 9 DIRDEARARASEIRAEADEEAEEIIAEAEADAE------------EILE---DREAEAER 53
Query: 91 QKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQ 150
+ + L+ A+L+A + R + + VL++ R ++ + + D + E+L L
Sbjct: 54 EIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGDKR--EELTKSLLDA 111
Query: 151 LLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQ 210
V + SR+ D+D+V ++L + + AG +D GG+ + ++
Sbjct: 112 ADADGVRVYSRKDDEDLVKSLLSDYDGL--EYAG-------------NIDCLGGVVVESE 156
Query: 211 RGKIKISNTLEARLELIAQQIIPDIRVAIFG 241
G+++++NT ++ LE + + + +I +FG
Sbjct: 157 DGRVRVNNTFDSILEDVWEDNLKEISDRLFG 187
Score = 31.9 bits (73), Expect = 0.43
Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 32/211 (15%)
Query: 253 DVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVEL 312
D++ + + + I EA+E+AEEI A+AE + +I+E +E + E
Sbjct: 9 DIRDEARARASEIRAEADEEAEEIIAEAEADAE------------EILE---DREAEAER 53
Query: 313 QKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQ 372
+ + L+ A+L+A + R + + VL++ R ++ + + D + E+L L
Sbjct: 54 EIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGDKR--EELTKSLLDA 111
Query: 373 LLEPNVLIRSREVDKDIVNAVLPNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQ 432
V + SR+ D+D+V ++L + + AG +D GG+ + ++
Sbjct: 112 ADADGVRVYSRKDDEDLVKSLLSDYDGL--EYAG-------------NIDCLGGVVVESE 156
Query: 433 RGKIKISNTLEARLELIAQQIIPDIRVAIFG 463
G+++++NT ++ LE + + + +I +FG
Sbjct: 157 DGRVRVNNTFDSILEDVWEDNLKEISDRLFG 187
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 31.6 bits (72), Expect = 0.98
Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 1 MALSDADVQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEE 60
A S A KQ+K + I I + D + +++ + +E E ++ A++
Sbjct: 29 AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD 88
Query: 61 EFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRN 117
+ K + RL +E +R++++ L +++ + + AL V + +
Sbjct: 89 LKKLRKQIADLNARLNALEVQEREQRRR-LAEQLAALQRSGRNPPPALLVSPEDAQR 144
>gnl|CDD|233592 TIGR01834, PHA_synth_III_E, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaE subunit. This model represents the PhaE
subunit of the heterodimeric class (class III) of
polymerase for poly(R)-hydroxyalkanoic acids (PHAs),
carbon and energy storage polymers of many bacteria. The
most common PHA is polyhydroxybutyrate but about 150
different constituent hydroxyalkanoic acids (HAs) have
been identified in various species. This model must be
designated subfamily to indicate the heterogeneity of
PHAs [Cellular processes, Adaptations to atypical
conditions, Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 320
Score = 30.3 bits (68), Expect = 2.1
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 23 ANAIGDDADVQKQIKHMMAFIEQEANEKAEEI--DAKAEEEFNIEKGRLVQHQRLKIMEY 80
+ + A K +K A + AEE + A EE G+ + M
Sbjct: 214 MSDLLARAKSGKPVKTAKALYDLWV-IAAEEAYAEVFASEENAKVHGKFINAL----MRL 268
Query: 81 YDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKN 132
R ++Q ++ ++ N+ ++ L R +R + +KRLGE+ N
Sbjct: 269 --RIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGELEAN 318
Score = 28.8 bits (64), Expect = 6.2
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 249 LSDADVQKQIKHMMAFIEQEANEKAEEI--DAKAEEEFNIEKGRLVQHQRLKIMEYYDRK 306
L+ A K +K A + AEE + A EE G+ + M R
Sbjct: 218 LARAKSGKPVKTAKALYDLWV-IAAEEAYAEVFASEENAKVHGKFINAL----MRL--RI 270
Query: 307 EKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKN 354
++Q ++ ++ N+ ++ L R +R + +KRLGE+ N
Sbjct: 271 QQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGELEAN 318
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 30.1 bits (69), Expect = 2.3
Identities = 10/54 (18%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 236 RVAIFGRNPNLMALSDADVQKQIKHMMA-FIEQEANEKAEEIDAKAEEEFNIEK 288
+V +F R ++ L D +V KQ + +++ + + K ++ +E+ +
Sbjct: 194 KVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELE 247
>gnl|CDD|214006 cd12807, Esterase_713, Novel bacterial esterase 713 that cleaves
esters on halogenated cyclic compounds. This family
contains proteins similar to a novel bacterial esterase
(esterase 713) with the alpha/beta hydrolase fold that
cleaves esters on halogenated cyclic compounds. This
Alcaligenes esterase, however, does not contain the
GXSXXG pentapeptide around the active site serine
residue as seen in other esterase families. This enzyme
is active as a dimer though its natural substrate is
unknown. It has two distinct disulfide bridges; one
formed between adjacent cysteines appears to facilitate
the correct formation of the oxyanion cleft in the
catalytic site. Esterase 713 also resembles human
pancreatic lipase in its location of the acidic residue
of the catalytic triad. It is possibly exported from the
cytosol to the periplasmic space. A large majority of
sequences in this family have yet to be characterized.
Length = 315
Score = 30.0 bits (68), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 220 LEARLELIAQQIIPDIRVAIFGRNPNLMALSD 251
+EA E +Q++PD+ + NP AL+
Sbjct: 153 VEAVAEF-YKQVVPDLNATLPTPNPTPNALAA 183
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 29.9 bits (68), Expect = 3.6
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 20 EQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR--LKI 77
E+ A I ++A +K+ + + EA E+ ++ A+ E E + L + +R L+
Sbjct: 31 EELAKRIIEEA--KKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQR 88
Query: 78 MEYYDRK-EKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVT 130
E DRK E + ++ ++ + K L +E+ + ++ E R+ L ++
Sbjct: 89 EETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERIS 142
Score = 28.4 bits (64), Expect = 9.9
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 265 IEQEANEKAEEIDAKAEEEFNIEKGRLVQHQR--LKIMEYYDRK-EKQVELQKKIQSSNM 321
EA E+ ++ A+ E E + L + +R L+ E DRK E + ++ ++
Sbjct: 52 ALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEK 111
Query: 322 LNQARLKALKVREDHVRNVLDEARKRLGEVT 352
+ K L +E+ + ++ E R+ L ++
Sbjct: 112 ELSNKEKNLDEKEEELEELIAEQREELERIS 142
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 28.9 bits (65), Expect = 4.4
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 231 IIPDIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEK 288
D+ A P L + ++++ ++ +E A E E I+ A E +
Sbjct: 19 EFKDLANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGF 76
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 29.1 bits (66), Expect = 5.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 73 QRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARK 124
QR ++ Y D+ +K +L+ S L L+ L ++D + +L A +
Sbjct: 180 QREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPE 231
Score = 29.1 bits (66), Expect = 5.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 295 QRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARK 346
QR ++ Y D+ +K +L+ S L L+ L ++D + +L A +
Sbjct: 180 QREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPE 231
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.3 bits (66), Expect = 6.0
Identities = 23/142 (16%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 8 VQKQIKHMMAFIEQEANAIGDDADVQKQIKHMMAFIEQEANEKAEEIDAKAE--EEFNIE 65
V+++I + A I +I + + + +A +E E ++ EI+ EE
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351
Query: 66 KGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKR 125
+ +L EY + KE+ +L+ +++ + + R L++ ++
Sbjct: 352 RDKL-------TEEYAELKEELEDLRAELEEVD----KEFAETRDELKDYREKLEKLKRE 400
Query: 126 LGEVTKNRDKYTQLIEKLIIQG 147
+ E+ + D+ + +++L +
Sbjct: 401 INELKRELDRLQEELQRLSEEL 422
>gnl|CDD|187766 cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas1 is the most universal CRISPR system protein thought
to be involved in spacer integration; Cas1 is
metal-dependent deoxyribonuclease, also binds RNA; Shown
to possess a unique fold consisting of a N-terminal
beta-strand domain and a C-terminal alpha-helical
domain.
Length = 317
Score = 28.4 bits (64), Expect = 8.6
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 72 HQRLKIMEYYDRKEKQVELQKKIQSSNMLNQAR-LKALKVREDHVRNVLDEARKRLGEVT 130
R E Y EK++EL ++I + NQ R LK + L E + L ++
Sbjct: 85 LLRRAQYEAYLDPEKRLELAREIVRGKIRNQRRVLKRYARDGKELLLALAELEELLEKLD 144
Query: 131 KNRDKYTQL--IE----KLIIQGLLQLLEPNVLI--RSREVDKDIVNAVL 172
K + +L IE K+ + L QLL RSR KD VNA+L
Sbjct: 145 KAKSI-EELRGIEGNAAKIYFEALFQLLPKEFRFEGRSRRPPKDPVNALL 193
Score = 28.4 bits (64), Expect = 8.6
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 294 HQRLKIMEYYDRKEKQVELQKKIQSSNMLNQAR-LKALKVREDHVRNVLDEARKRLGEVT 352
R E Y EK++EL ++I + NQ R LK + L E + L ++
Sbjct: 85 LLRRAQYEAYLDPEKRLELAREIVRGKIRNQRRVLKRYARDGKELLLALAELEELLEKLD 144
Query: 353 KNRDKYTQL--IE----KLIIQGLLQLLEPNVLI--RSREVDKDIVNAVL 394
K + +L IE K+ + L QLL RSR KD VNA+L
Sbjct: 145 KAKSI-EELRGIEGNAAKIYFEALFQLLPKEFRFEGRSRRPPKDPVNALL 193
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 28.6 bits (65), Expect = 8.9
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 2 ALSDADV----QKQI---KHMMAFIEQEANAIGDDA--------DVQKQIKHMMAFIEQE 46
A D +KQ K ++ F ++ A+ +V+ +I + E E
Sbjct: 505 AFDPVDTYCPPEKQYEMLKLILTFYDEAFKALEKGVPVSEILELEVRDRIARLKYIPENE 564
Query: 47 ANEKAEEIDAKAEEEFN 63
EK +EI K EEE
Sbjct: 565 YLEKIDEIFEKLEEELE 581
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.5 bits (64), Expect = 9.4
Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 32 VQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRK--EKQVE 89
+ K++ + A E+E +E + + E ++ + + + + ++ E
Sbjct: 175 LSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEE 234
Query: 90 LQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLI 144
L+KK + L Q + + E ++N L L ++ + I++ +
Sbjct: 235 LRKKYEEK--LRQELERQAEAHEQKLKNELALQAIELQR------EFNKEIKEKV 281
Score = 28.5 bits (64), Expect = 9.4
Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 254 VQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRK--EKQVE 311
+ K++ + A E+E +E + + E ++ + + + + ++ E
Sbjct: 175 LSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEE 234
Query: 312 LQKKIQSSNMLNQARLKALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLI 366
L+KK + L Q + + E ++N L L ++ + I++ +
Sbjct: 235 LRKKYEEK--LRQELERQAEAHEQKLKNELALQAIELQR------EFNKEIKEKV 281
>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 28.5 bits (63), Expect = 9.6
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 184 GKEVNL--KLDNDQFLPVDTTGGIELL----AQRGKIKISNTLEARLELIAQQIIPDIRV 237
K++ + ++D F P+ T + L Q GK+K S +++LE+I Q+ D+R
Sbjct: 192 TKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLK-SPKSDSKLEVICQEAGGDLRS 250
Query: 238 AI 239
AI
Sbjct: 251 AI 252
Score = 28.5 bits (63), Expect = 9.6
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 406 GKEVNL--KLDNDQFLPVDTTGGIELL----AQRGKIKISNTLEARLELIAQQIIPDIRV 459
K++ + ++D F P+ T + L Q GK+K S +++LE+I Q+ D+R
Sbjct: 192 TKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLK-SPKSDSKLEVICQEAGGDLRS 250
Query: 460 AI 461
AI
Sbjct: 251 AI 252
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 27.4 bits (61), Expect = 9.7
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 46 EANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARL 105
++ EI+ K EE+ E+ L ++ K + +R+ KQ+EL+K Q
Sbjct: 32 SKEKRRAEIEQKLEEQEKQEREEL---RKEKRELFEERRRKQLELRKLEQK-----MEDE 83
Query: 106 KALKVREDHVRNV 118
K + +H +
Sbjct: 84 KLQETWHEHNLAL 96
Score = 27.4 bits (61), Expect = 9.7
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 268 EANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARL 327
++ EI+ K EE+ E+ L ++ K + +R+ KQ+EL+K Q
Sbjct: 32 SKEKRRAEIEQKLEEQEKQEREEL---RKEKRELFEERRRKQLELRKLEQK-----MEDE 83
Query: 328 KALKVREDHVRNV 340
K + +H +
Sbjct: 84 KLQETWHEHNLAL 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.350
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,122,561
Number of extensions: 2513416
Number of successful extensions: 4227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3974
Number of HSP's successfully gapped: 364
Length of query: 467
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 367
Effective length of database: 6,502,202
Effective search space: 2386308134
Effective search space used: 2386308134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)