RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12089
(467 letters)
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 118
Score = 96.4 bits (240), Expect = 1e-24
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 113 DHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVL 172
+ + +VL+E ++RL +++ D+Y + ++ L+ + + +L E V + S E ++ + +
Sbjct: 1 EIISSVLEEVKRRLETMSE--DEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58
Query: 173 PNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 232
+ +V+++L VDT GG+ + + G+I+I NT EAR+E +I
Sbjct: 59 EEIKSEL-----GDVSIELGE----TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIR 109
Query: 233 PDIRVAIFG 241
I +FG
Sbjct: 110 STIAKVLFG 118
Score = 96.4 bits (240), Expect = 1e-24
Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 335 DHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDKDIVNAVL 394
+ + +VL+E ++RL +++ D+Y + ++ L+ + + +L E V + S E ++ + +
Sbjct: 1 EIISSVLEEVKRRLETMSE--DEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58
Query: 395 PNVAKAYQDVAGKEVNLKLDNDQFLPVDTTGGIELLAQRGKIKISNTLEARLELIAQQII 454
+ +V+++L VDT GG+ + + G+I+I NT EAR+E +I
Sbjct: 59 EEIKSEL-----GDVSIELGE----TVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIR 109
Query: 455 PDIRVAIFG 463
I +FG
Sbjct: 110 STIAKVLFG 118
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 28.2 bits (63), Expect = 2.0
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 234 DIRVAIFGRNPNLMALSDADVQKQIKHMMAFIEQ-EANEKAEEIDAKAEEEFNIEKGRLV 292
++V FG N +A++D D + + + +++ ++ + N
Sbjct: 175 HLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVN------- 227
Query: 293 QHQRLKIMEYYDRKEKQVELQK-KIQSSNMLNQARL 327
+ EY Q + N+L AR+
Sbjct: 228 ----ALVDEYESCYTMTPATQIHGEKRQNVLEAARI 259
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 186
Score = 27.5 bits (61), Expect = 3.0
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 246 LMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDR 305
+ D ++++I ++ I+ N KA ID+ + + I Y
Sbjct: 123 ACPVLDPTLRREIIDILE-IQLRDNIKACRIDSSLNNIYKHNSDEKPVRAQAAIYRYLKG 181
Query: 306 KEKQ 309
KE+
Sbjct: 182 KEET 185
Score = 26.3 bits (58), Expect = 6.6
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 29 DADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQ 87
D ++++I ++ I+ N KA ID+ + + I Y KE+
Sbjct: 128 DPTLRREIIDILE-IQLRDNIKACRIDSSLNNIYKHNSDEKPVRAQAAIYRYLKGKEET 185
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 27.8 bits (62), Expect = 3.5
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 204 GIELLAQRGKIKISNTLEARLELIA----------QQIIPDIRVAIFGRNPNLMALSDAD 253
G E+L + G ++++ + +I Q I P + ++ +
Sbjct: 294 GNEVLMRHGIPACTHSVSQEMAMITGALDAMILDYQCIQPSVATIAECTGTTVITTMEMS 353
Query: 254 VQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQ 293
H+ F E+ A E A++I A + F KG+ V+
Sbjct: 354 KITGATHV-NFAEEAAVENAKQILRLAIDTFKRRKGKPVE 392
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 26.7 bits (58), Expect = 8.0
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 106 KALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDK 165
+A ++ D +++ EV +R L +K++ + + ++V++
Sbjct: 11 QAEVLKADMT-----DSKLGPAEVWTSRQALQDLYQKML------VTDLE-YALDKKVEQ 58
Query: 166 DIVNAVLPNVAKAYQDVAGKEVN 188
D+ N N Q A N
Sbjct: 59 DLWNHAFKNQITTLQGQAKNRAN 81
Score = 26.7 bits (58), Expect = 8.0
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 328 KALKVREDHVRNVLDEARKRLGEVTKNRDKYTQLIEKLIIQGLLQLLEPNVLIRSREVDK 387
+A ++ D +++ EV +R L +K++ + + ++V++
Sbjct: 11 QAEVLKADMT-----DSKLGPAEVWTSRQALQDLYQKML------VTDLE-YALDKKVEQ 58
Query: 388 DIVNAVLPNVAKAYQDVAGKEVN 410
D+ N N Q A N
Sbjct: 59 DLWNHAFKNQITTLQGQAKNRAN 81
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 26.0 bits (57), Expect = 9.2
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 246 LMALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDR 305
L D +++++ ++ I KA ID + + R +L I +Y
Sbjct: 124 ATPLLDPRLKQRVLDIID-ILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIKS 182
Query: 306 KEK 308
E+
Sbjct: 183 LEQ 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.350
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,630,283
Number of extensions: 80016
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 62
Length of query: 467
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,185,626
Effective search space: 448166628
Effective search space used: 448166628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)