Query psy1209
Match_columns 61
No_of_seqs 104 out of 330
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:25:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8k_A Flap endonuclease 1; he 99.7 1.1E-17 3.8E-22 119.3 0.6 58 2-59 1-65 (341)
2 3ory_A Flap endonuclease 1; hy 99.6 5.1E-17 1.7E-21 117.0 2.8 58 1-59 11-74 (363)
3 1ul1_X Flap endonuclease-1; pr 99.5 3.2E-15 1.1E-19 107.3 -0.7 58 2-59 1-65 (379)
4 1b43_A Protein (FEN-1); nuclea 99.5 1.7E-14 5.8E-19 101.7 2.7 57 1-59 1-60 (340)
5 3qe9_Y Exonuclease 1; exonucle 99.4 3.1E-14 1.1E-18 102.0 1.4 54 1-59 1-57 (352)
6 1a76_A Flap endonuclease-1 pro 99.4 1E-13 3.6E-18 97.2 2.5 56 1-59 1-60 (326)
7 1rxw_A Flap structure-specific 99.4 1.5E-13 5.2E-18 96.7 2.7 57 1-59 1-60 (336)
8 2izo_A FEN1, flap structure-sp 98.8 6.8E-10 2.3E-14 78.5 0.8 40 20-59 17-57 (346)
9 1exn_A 5'-exonuclease, 5'-nucl 97.1 0.00018 6.1E-09 50.7 1.7 33 4-37 2-35 (290)
10 1bgx_T TAQ DNA polymerase; DNA 96.9 6.7E-05 2.3E-09 58.8 -1.8 36 20-59 11-46 (832)
11 3ka1_A RBCX protein; chaperone 34.3 13 0.00044 23.6 0.9 17 28-44 37-54 (126)
12 2peq_A ORF134; helix bundle, p 27.9 16 0.00056 23.2 0.5 17 28-44 37-54 (134)
13 2fe1_A Conserved hypothetical 21.6 33 0.0011 20.5 1.0 14 23-36 27-40 (156)
14 1w8i_A Putative VAPC ribonucle 20.7 54 0.0019 19.3 1.9 14 23-36 2-15 (156)
15 2k8f_B Cellular tumor antigen 20.6 24 0.00083 18.1 0.2 10 5-14 21-30 (39)
No 1
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.65 E-value=1.1e-17 Score=119.32 Aligned_cols=58 Identities=62% Similarity=0.854 Sum_probs=53.3
Q ss_pred cccchhhcccccCCchhh-------hhceeEEehhhHHHHHHHHHHhcCCcccCCCCCceeeeee
Q psy1209 2 GILGLAKLVADVAPSSIR-------ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 2 GI~gL~~ll~~~a~~~i~-------e~k~vAIDAS~~iYQFl~aiR~~G~~L~n~~G~~TsHl~~ 59 (61)
||+|||++|++.+|++++ ++|+||||||+|||||+.|+|.+|.+|+|++|++|+|+.+
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g 65 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMG 65 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHH
T ss_pred CchhHHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHH
Confidence 899999999999997765 3499999999999999999998789999999999999864
No 2
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.64 E-value=5.1e-17 Score=117.00 Aligned_cols=58 Identities=34% Similarity=0.525 Sum_probs=52.3
Q ss_pred CcccchhhcccccCCchh-h----hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 1 MGILGLAKLVADVAPSSI-R----ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 1 MGI~gL~~ll~~~a~~~i-~----e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
||| |||+||++.+++.+ . .+|+||||||+|||||+.++| ++|.+|+|++|+.|||+.+
T Consensus 11 MGv-~L~~ll~~~~~~~~~~l~~l~gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~g 74 (363)
T 3ory_A 11 MGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSG 74 (363)
T ss_dssp CSC-CCGGGCCGGGEEECSSGGGGTTCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHH
T ss_pred cCc-CHHHHhhHhcccccCCHHHhCCCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHH
Confidence 999 99999998777655 2 569999999999999999999 6899999999999999865
No 3
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.46 E-value=3.2e-15 Score=107.25 Aligned_cols=58 Identities=62% Similarity=0.854 Sum_probs=39.8
Q ss_pred cccchhhcccccCCchhh-------hhceeEEehhhHHHHHHHHHHhcCCcccCCCCCceeeeee
Q psy1209 2 GILGLAKLVADVAPSSIR-------ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 2 GI~gL~~ll~~~a~~~i~-------e~k~vAIDAS~~iYQFl~aiR~~G~~L~n~~G~~TsHl~~ 59 (61)
||+|||++|++.+|.+++ .+++||||+|+|||||+.|+|++|.+|+|+.|+.|+|+.+
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~l~~l~g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g 65 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMG 65 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC-------------CCHHHHH
T ss_pred CcChhHHHHHHhccccceeeCHHHcCCCEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHH
Confidence 899999999999985443 3499999999999999999997788999999999999864
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.46 E-value=1.7e-14 Score=101.68 Aligned_cols=57 Identities=30% Similarity=0.487 Sum_probs=46.9
Q ss_pred CcccchhhcccccCCchhh--hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 1 MGILGLAKLVADVAPSSIR--ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 1 MGI~gL~~ll~~~a~~~i~--e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
||| |||++| ..-+..++ .+++||||+|+||||++.|+| ++|.+|+|+.|+.|+|+..
T Consensus 1 MGI-gL~~~l-~~~~~~l~~l~g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g 60 (340)
T 1b43_A 1 MGV-PIGEII-PRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSG 60 (340)
T ss_dssp -CC-CCGGGC-CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHH
T ss_pred CCC-ChHHHh-cccccCHHHhCCCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHH
Confidence 999 999999 22122233 569999999999999999999 7899999999999999854
No 5
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=99.41 E-value=3.1e-14 Score=102.04 Aligned_cols=54 Identities=28% Similarity=0.398 Sum_probs=43.3
Q ss_pred CcccchhhcccccCCch-hh--hhceeEEehhhHHHHHHHHHHhcCCcccCCCCCceeeeee
Q psy1209 1 MGILGLAKLVADVAPSS-IR--ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 1 MGI~gL~~ll~~~a~~~-i~--e~k~vAIDAS~~iYQFl~aiR~~G~~L~n~~G~~TsHl~~ 59 (61)
|||+|||++|++.+++. ++ ++++||||||+||||++.+.+.+ ++.|++|||+..
T Consensus 1 MGI~GL~~~L~~~~~~~~l~~l~Gk~vaIDas~wL~~~~~~~~~~-----l~~G~~t~~l~~ 57 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEK-----LAKGEPTDRYVG 57 (352)
T ss_dssp -CCTTHHHHTTTSEEEEEGGGGTTSEEEEETHHHHHHHHHHTHHH-----HHTTCCCCHHHH
T ss_pred CCcchHHHHHHhhCCcCCHHHhCCcEEEEecHHHHHHhhhccchh-----hcCCCCcHHHHH
Confidence 99999999999998763 33 66999999999999988776521 258999999753
No 6
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.38 E-value=1e-13 Score=97.18 Aligned_cols=56 Identities=30% Similarity=0.492 Sum_probs=46.5
Q ss_pred CcccchhhcccccCCc-hhh--hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 1 MGILGLAKLVADVAPS-SIR--ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 1 MGI~gL~~ll~~~a~~-~i~--e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
||| |||++| ...+ .++ .+++||||+|+||||++.|++ ++|.+|+|+.|+.|+|+..
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g 60 (326)
T 1a76_A 1 MGV-QFGDFI--PKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNG 60 (326)
T ss_dssp -CC-CCGGGS--CCEECCSGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHH
T ss_pred CCC-ChHHHH--hhcccCHHHhCCCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHH
Confidence 999 999999 2222 233 459999999999999999999 7888999999999999854
No 7
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.37 E-value=1.5e-13 Score=96.65 Aligned_cols=57 Identities=28% Similarity=0.442 Sum_probs=45.6
Q ss_pred CcccchhhcccccCCchhh--hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 1 MGILGLAKLVADVAPSSIR--ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 1 MGI~gL~~ll~~~a~~~i~--e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
||| |||++|... +..++ .++++|||+|+||||++.|+| .+|.+|+|++|+.|+|+.+
T Consensus 1 MGI-~L~~~l~~~-~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g 60 (336)
T 1rxw_A 1 MGA-DIGDLFERE-EVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSG 60 (336)
T ss_dssp --C-TGGGGCCCE-ECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHH
T ss_pred CCC-ChHHHHhcc-eeCHHHhCCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHH
Confidence 999 999999322 11233 459999999999999999998 7889999999999999864
No 8
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=98.81 E-value=6.8e-10 Score=78.54 Aligned_cols=40 Identities=35% Similarity=0.569 Sum_probs=33.9
Q ss_pred hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 20 ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 20 e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
.+++||||+|+||||++.|+| ++|.+|+|++|+.|+|+.+
T Consensus 17 ~~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g 57 (346)
T 2izo_A 17 KGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSG 57 (346)
T ss_dssp TTEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHH
T ss_pred CCCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHH
Confidence 449999999999999999998 5788999999999999864
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=97.08 E-value=0.00018 Score=50.70 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=15.7
Q ss_pred cchhhcccccCCchhh-hhceeEEehhhHHHHHHH
Q psy1209 4 LGLAKLVADVAPSSIR-ESRKICIDASMSLYQFLI 37 (61)
Q Consensus 4 ~gL~~ll~~~a~~~i~-e~k~vAIDAS~~iYQFl~ 37 (61)
+||.+||.++.++ ++ .++.++||+|+++|||..
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~lllIDg~~llyRa~~ 35 (290)
T 1exn_A 2 KSWGKFIEEEEAE-MASRRNLMIVDGTNLGFRFKH 35 (290)
T ss_dssp ------------------CEEEEEEHHHHHHHHHH
T ss_pred cchHHHhhhcccc-cccCCCEEEEECcHHHHHHHh
Confidence 6899999877776 43 458999999999999987
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=96.92 E-value=6.7e-05 Score=58.76 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=32.0
Q ss_pred hhceeEEehhhHHHHHHHHHHhcCCcccCCCCCceeeeee
Q psy1209 20 ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 20 e~k~vAIDAS~~iYQFl~aiR~~G~~L~n~~G~~TsHl~~ 59 (61)
.++.++||+|+|+||++.|++ +|+|++|+.|+|+.+
T Consensus 11 ~~~~llIDg~~~l~ra~~a~~----~l~~~~G~~t~av~g 46 (832)
T 1bgx_T 11 KGRVLLVDGHHLAYRTFHALK----GLTTSRGEPVQAVYG 46 (832)
T ss_dssp CTTSCCCCCSTHHHHTTSSCT----TCBCSSSCBCSSSTT
T ss_pred CCCEEEEEChHHHHHHHhcCC----ccccCCCcEehHHHH
Confidence 458999999999999999985 499999999999864
No 11
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=34.34 E-value=13 Score=23.56 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHH-hcCC
Q psy1209 28 ASMSLYQFLIAVR-SEGN 44 (61)
Q Consensus 28 AS~~iYQFl~aiR-~~G~ 44 (61)
++.|+|+|+..-. +||.
T Consensus 37 ~~~wL~~F~~~~~~~DGe 54 (126)
T 3ka1_A 37 RSLWLHQFTSQESIQDGE 54 (126)
T ss_dssp HHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHcCCCccHH
Confidence 4899999999877 6663
No 12
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=27.95 E-value=16 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHH-hcCC
Q psy1209 28 ASMSLYQFLIAVR-SEGN 44 (61)
Q Consensus 28 AS~~iYQFl~aiR-~~G~ 44 (61)
++.|||+|+..-. +||.
T Consensus 37 ~~~wL~~F~~~~~l~DGd 54 (134)
T 2peq_A 37 QAIWLGEFSKRHPIQESD 54 (134)
T ss_dssp HHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHhcCCCccHH
Confidence 4779999999877 7663
No 13
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=21.65 E-value=33 Score=20.45 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=11.7
Q ss_pred eeEEehhhHHHHHH
Q psy1209 23 KICIDASMSLYQFL 36 (61)
Q Consensus 23 ~vAIDAS~~iYQFl 36 (61)
++.+|+|.+++-|.
T Consensus 27 ~ivlDTsvli~~l~ 40 (156)
T 2fe1_A 27 ELVVDASAIAALYV 40 (156)
T ss_dssp EEEECHHHHHTTSS
T ss_pred eEEEEHHHHHHHHh
Confidence 58999999998663
No 14
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=20.73 E-value=54 Score=19.27 Aligned_cols=14 Identities=14% Similarity=0.123 Sum_probs=11.4
Q ss_pred eeEEehhhHHHHHH
Q psy1209 23 KICIDASMSLYQFL 36 (61)
Q Consensus 23 ~vAIDAS~~iYQFl 36 (61)
++.+|+|.++|-|.
T Consensus 2 mi~lDTnvli~~l~ 15 (156)
T 1w8i_A 2 AALIDTGIFFGFYS 15 (156)
T ss_dssp EEEECHHHHHHHHC
T ss_pred eEEEEhHHHHHHHc
Confidence 47899999998764
No 15
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=20.62 E-value=24 Score=18.11 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=8.0
Q ss_pred chhhcccccC
Q psy1209 5 GLAKLVADVA 14 (61)
Q Consensus 5 gL~~ll~~~a 14 (61)
+||+||.++.
T Consensus 21 dLW~LLP~~~ 30 (39)
T 2k8f_B 21 DLWKLLPENN 30 (39)
T ss_dssp HHHHTCSSSC
T ss_pred HHHHhCCccc
Confidence 6999998763
Done!