Query psy1209
Match_columns 61
No_of_seqs 104 out of 330
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 18:25:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1209.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1209hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ul1x2 c.120.1.2 (X:2-217) Fl 99.5 4.3E-16 3.1E-20 101.4 -0.5 58 2-59 1-65 (216)
2 d1a77a2 c.120.1.2 (A:2-208) Fl 99.3 5.5E-13 4E-17 87.1 3.3 54 5-59 3-59 (207)
3 d1rxwa2 c.120.1.2 (A:3-219) Fl 99.3 5.1E-13 3.7E-17 87.6 3.0 54 5-59 2-58 (217)
4 d1b43a2 c.120.1.2 (A:1-219) Fl 99.2 2.6E-12 1.9E-16 84.4 3.0 54 5-59 3-59 (219)
5 d1cmwa2 c.120.1.2 (A:10-173) 5 59.7 2.1 0.00015 25.2 1.8 32 21-56 3-34 (164)
6 d1chua3 d.168.1.1 (A:238-353) 55.8 2.1 0.00016 24.5 1.3 17 37-53 23-39 (116)
7 d2bs2a3 d.168.1.1 (A:251-371) 46.9 3.2 0.00023 24.0 1.0 16 38-53 21-36 (121)
8 d1neka3 d.168.1.1 (A:236-355) 42.1 4.1 0.0003 23.5 1.0 16 38-53 21-36 (120)
9 d2de6a2 d.129.3.3 (A:143-384) 40.7 1.3 9.7E-05 29.3 -1.6 30 2-32 81-124 (242)
10 d1kf6a3 d.168.1.1 (A:226-357) 39.2 5.7 0.00042 22.9 1.3 16 38-53 21-36 (132)
11 d2py8a1 a.280.1.1 (A:2-121) Ru 36.0 4.4 0.00032 24.0 0.4 17 28-44 36-53 (120)
12 d2peqa1 a.280.1.1 (A:2-109) Ru 34.3 5.2 0.00038 23.2 0.5 17 28-44 36-53 (108)
13 d1lk5a1 c.124.1.4 (A:1-130,A:2 29.5 15 0.0011 20.8 2.1 38 3-40 3-40 (149)
14 d1qo8a3 d.168.1.1 (A:360-505) 26.2 13 0.00091 20.4 1.3 15 38-52 15-29 (146)
15 d3d32a1 d.15.1.3 (A:1-118) GAB 24.6 20 0.0014 20.4 2.0 20 22-41 49-68 (118)
16 d1vkwa_ d.90.1.2 (A:) Putative 22.7 18 0.0013 22.2 1.6 33 26-58 180-214 (217)
17 d1d4ca3 d.168.1.1 (A:360-505) 21.5 17 0.0013 20.4 1.3 15 38-52 19-33 (146)
No 1
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=4.3e-16 Score=101.41 Aligned_cols=58 Identities=62% Similarity=0.854 Sum_probs=40.1
Q ss_pred cccchhhcccccCCchhh-------hhceeEEehhhHHHHHHHHHHhcCCcccCCCCCceeeeee
Q psy1209 2 GILGLAKLVADVAPSSIR-------ESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 2 GI~gL~~ll~~~a~~~i~-------e~k~vAIDAS~~iYQFl~aiR~~G~~L~n~~G~~TsHl~~ 59 (61)
||+|||++|++.+|.+++ .+++||||||+|||||+.+.+..+.++.+..|+.++|+..
T Consensus 1 GIkgL~~~l~~~~~~~i~~~~l~~l~gk~vaIDas~~l~~~l~~~~~~~~~l~~~~~~~~~~l~~ 65 (216)
T d1ul1x2 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMG 65 (216)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC-------------CCHHHHH
T ss_pred CcchHHHHHHHhCcCceEEecHHHcCCCEEEEEeHHHHHHHHHHhccccchhhccCCCCcHHHHH
Confidence 899999999999988665 3399999999999999999998889999999999998763
No 2
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.29 E-value=5.5e-13 Score=87.06 Aligned_cols=54 Identities=28% Similarity=0.425 Sum_probs=43.4
Q ss_pred chhhcccccCCchhh--hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 5 GLAKLVADVAPSSIR--ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 5 gL~~ll~~~a~~~i~--e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
.|.+++..+.-. ++ ++|+||||||+|||||+.++| ++|.++.+..|+.|+|+..
T Consensus 3 ~~~~~~~~~~i~-l~~l~gk~vaIDas~~L~~~l~~~~~~~~~~l~~~~g~~~~~l~~ 59 (207)
T d1a77a2 3 QFGDFIPKNIIS-FEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNG 59 (207)
T ss_dssp CCGGGSCCEECC-SGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHH
T ss_pred ChhhccCCceeC-HHHhCCCEEEEEChHHHHHHHHHhhcccCchhhhccCCcCHHHHH
Confidence 466777432111 22 669999999999999999999 8899999999999999853
No 3
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.29 E-value=5.1e-13 Score=87.63 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=45.0
Q ss_pred chhhcccccCCchhh--hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 5 GLAKLVADVAPSSIR--ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 5 gL~~ll~~~a~~~i~--e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
.|++|++..-- .++ .+|+||||||+|||||+.++| .+|.++.|..|++++|+.+
T Consensus 2 ~~~~l~~~~~~-~l~~l~Gk~vAIDas~wL~k~l~~~~~~~~~~l~~~~~~~~~~l~~ 58 (217)
T d1rxwa2 2 DIGDLFEREEV-ELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSG 58 (217)
T ss_dssp TGGGGCCCEEC-CGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHH
T ss_pred ChhHhccCccc-CHHHhCCCEEEEECHHHHHHHHHHhccccCCchhhccCCccHHHHH
Confidence 47888874221 233 679999999999999999999 8899999999999999865
No 4
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=99.20 E-value=2.6e-12 Score=84.45 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=43.6
Q ss_pred chhhcccccCCchhh--hhceeEEehhhHHHHHHHHHH-hcCCcccCCCCCceeeeee
Q psy1209 5 GLAKLVADVAPSSIR--ESRKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59 (61)
Q Consensus 5 gL~~ll~~~a~~~i~--e~k~vAIDAS~~iYQFl~aiR-~~G~~L~n~~G~~TsHl~~ 59 (61)
.|.++++...-. ++ .+|+||||||+|||||+.++| ..|.+|.+..|++++||.+
T Consensus 3 ~~~~~~~~k~~~-l~~l~gk~iaIDas~~L~k~l~~~~~~~~~~l~~~~~~~~~~l~~ 59 (219)
T d1b43a2 3 PIGEIIPRKEIE-LENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSG 59 (219)
T ss_dssp CCGGGCCCEECC-GGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHH
T ss_pred chhhccCcCccC-HHHcCCCEEEEEChHHHHHHHHHhcccccchhhhccCCCchHHHH
Confidence 366677632222 33 569999999999999999999 8899999999999999754
No 5
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=59.72 E-value=2.1 Score=25.17 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=23.9
Q ss_pred hceeEEehhhHHHHHHHHHHhcCCcccCCCCCceee
Q psy1209 21 SRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTRY 56 (61)
Q Consensus 21 ~k~vAIDAS~~iYQFl~aiR~~G~~L~n~~G~~TsH 56 (61)
.|.+-||++..+|....|+ .++.|++|+.|+-
T Consensus 3 ~~~lLIDg~~l~~R~~~a~----~~~~~~~g~~~~~ 34 (164)
T d1cmwa2 3 GRVLLVDGHHLAYRTFHAL----KGLTTSRGEPVQA 34 (164)
T ss_dssp EEEEEEETTHHHHHHHTSS----TTCBCTTSCBCHH
T ss_pred CeEEEEeChHHHHHHHHcC----CcccCCCCCeeHH
Confidence 3678899999999876666 3467888877653
No 6
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=55.83 E-value=2.1 Score=24.54 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=14.6
Q ss_pred HHHHhcCCcccCCCCCc
Q psy1209 37 IAVRSEGNQLMSVDGEP 53 (61)
Q Consensus 37 ~aiR~~G~~L~n~~G~~ 53 (61)
-|+|.+|.-|.|++||-
T Consensus 23 Ea~RGeGa~L~n~~Ger 39 (116)
T d1chua3 23 EALRGEGAYLKRPDGTR 39 (116)
T ss_dssp HHHHHTTCEEECTTSCB
T ss_pred HhhcCCceEEEeCCCcc
Confidence 47898899999999985
No 7
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=46.94 E-value=3.2 Score=24.03 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=14.1
Q ss_pred HHHhcCCcccCCCCCc
Q psy1209 38 AVRSEGNQLMSVDGEP 53 (61)
Q Consensus 38 aiR~~G~~L~n~~G~~ 53 (61)
|+|.+|.-|.|++|+-
T Consensus 21 avRGeGa~L~n~~G~r 36 (121)
T d2bs2a3 21 GCRGDGGILRDVDGHR 36 (121)
T ss_dssp HHHHHTCEEECTTCCB
T ss_pred hhccCceEEEecCCcc
Confidence 7898899999999985
No 8
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=42.05 E-value=4.1 Score=23.49 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.9
Q ss_pred HHHhcCCcccCCCCCc
Q psy1209 38 AVRSEGNQLMSVDGEP 53 (61)
Q Consensus 38 aiR~~G~~L~n~~G~~ 53 (61)
|+|.+|..|.|++|+-
T Consensus 21 avRGeGa~L~n~~ger 36 (120)
T d1neka3 21 GCRGEGGYLLNKHGER 36 (120)
T ss_dssp HHHHHTCEEECTTSCC
T ss_pred HHcCCCCEEECcchhh
Confidence 7898899999999973
No 9
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}
Probab=40.74 E-value=1.3 Score=29.28 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=20.9
Q ss_pred cccchhhcccccCCchhhhh--------------ceeEEehhhHH
Q psy1209 2 GILGLAKLVADVAPSSIRES--------------RKICIDASMSL 32 (61)
Q Consensus 2 GI~gL~~ll~~~a~~~i~e~--------------k~vAIDAS~~i 32 (61)
|-||..+|+.+..-+ +.|+ +.++++.||||
T Consensus 81 gPKGv~~l~~~~~~P-v~e~~~~g~~~~~~~~g~~~~~~~~SiwL 124 (242)
T d2de6a2 81 GRKGVYDLIGEHGVP-VFEGTIGGEVVREGAYGEKIVANDISIWL 124 (242)
T ss_dssp CCCEEEECGGGTCEE-ECEEEETTEEEEECEECSBCCCCEEEEET
T ss_pred CCcchhhccccccee-eccCccCcceeeccccCCccCceeeEEEc
Confidence 567888888777644 2222 77888999987
No 10
>d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli [TaxId: 562]}
Probab=39.16 E-value=5.7 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=14.0
Q ss_pred HHHhcCCcccCCCCCc
Q psy1209 38 AVRSEGNQLMSVDGEP 53 (61)
Q Consensus 38 aiR~~G~~L~n~~G~~ 53 (61)
|+|.+|.-|.|++|+-
T Consensus 21 a~RGeGa~Lvn~~g~r 36 (132)
T d1kf6a3 21 GCRGEGGILVNKNGYR 36 (132)
T ss_dssp HHHHTTCEEECTTCCC
T ss_pred hhcCCccEEEecCCcc
Confidence 7898899999999973
No 11
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=35.99 E-value=4.4 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHH-hcCC
Q psy1209 28 ASMSLYQFLIAVR-SEGN 44 (61)
Q Consensus 28 AS~~iYQFl~aiR-~~G~ 44 (61)
.+.|||+|+..-. +||.
T Consensus 36 ~~~wL~~f~~~~~~~DGd 53 (120)
T d2py8a1 36 QAIWLNQYLASHSIQNGE 53 (120)
T ss_dssp HHHHHHHHHHHSCCSSHH
T ss_pred HHHHHHHHHhcCCCCCHH
Confidence 4899999999877 6663
No 12
>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}
Probab=34.29 E-value=5.2 Score=23.17 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHH-hcCC
Q psy1209 28 ASMSLYQFLIAVR-SEGN 44 (61)
Q Consensus 28 AS~~iYQFl~aiR-~~G~ 44 (61)
.+.|||+|+..-. +||.
T Consensus 36 ~~~wL~~F~~~~~~~DGd 53 (108)
T d2peqa1 36 QAIWLGEFSKRHPIQESD 53 (108)
T ss_dssp HHHHHHHHHHHSCTTSHH
T ss_pred hHHHHHHHHhcCCCCCHH
Confidence 3789999999876 6663
No 13
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.50 E-value=15 Score=20.79 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.2
Q ss_pred ccchhhcccccCCchhhhhceeEEehhhHHHHHHHHHH
Q psy1209 3 ILGLAKLVADVAPSSIRESRKICIDASMSLYQFLIAVR 40 (61)
Q Consensus 3 I~gL~~ll~~~a~~~i~e~k~vAIDAS~~iYQFl~aiR 40 (61)
+....+.|...|-+-++++..|.||++-..+.+...+.
T Consensus 3 ~~E~K~~IA~~Aa~lI~dg~~I~ldsGTT~~~la~~L~ 40 (149)
T d1lk5a1 3 VEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLG 40 (149)
T ss_dssp HHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHH
Confidence 33334455544545566889999999999988888886
No 14
>d1qo8a3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=26.24 E-value=13 Score=20.39 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=12.1
Q ss_pred HHHhcCCcccCCCCC
Q psy1209 38 AVRSEGNQLMSVDGE 52 (61)
Q Consensus 38 aiR~~G~~L~n~~G~ 52 (61)
++|.+|.-+.|++|+
T Consensus 15 ~~rG~GgIlVn~~G~ 29 (146)
T d1qo8a3 15 TVRGVGAVMVNKDGN 29 (146)
T ss_dssp HHHHTTCEEECTTSC
T ss_pred hhhcCCeEEECCCCC
Confidence 567778888899986
No 15
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.55 E-value=20 Score=20.40 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.5
Q ss_pred ceeEEehhhHHHHHHHHHHh
Q psy1209 22 RKICIDASMSLYQFLIAVRS 41 (61)
Q Consensus 22 k~vAIDAS~~iYQFl~aiR~ 41 (61)
++..|...+.+.||+..||+
T Consensus 49 ~KflVp~d~tv~qf~~~iRk 68 (118)
T d3d32a1 49 KKYLVPSDLTVGQFYFLIRK 68 (118)
T ss_dssp SEEEEETTCBHHHHHHHHHH
T ss_pred ceEEecCCccHHHHHHHHHH
Confidence 88999999999999999993
No 16
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]}
Probab=22.67 E-value=18 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=28.3
Q ss_pred EehhhHHHHHHHHHH--hcCCcccCCCCCceeeee
Q psy1209 26 IDASMSLYQFLIAVR--SEGNQLMSVDGEPTRYSV 58 (61)
Q Consensus 26 IDAS~~iYQFl~aiR--~~G~~L~n~~G~~TsHl~ 58 (61)
||.-+.+|-|=++.+ =.-.|.-|.+|+-|-|++
T Consensus 180 iDlGI~~~hfe~~a~e~~~~~p~~~~~~~~~~~~~ 214 (217)
T d1vkwa_ 180 VDLGIALSHAYLTAREIFKREPVIQKRGEDTYCLI 214 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCEEEEETTTEEEEE
T ss_pred cchhHHHHHHHHhhhhhcccCccccccCCceEEEE
Confidence 699999999988888 335688999999999986
No 17
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}
Probab=21.46 E-value=17 Score=20.36 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=11.9
Q ss_pred HHHhcCCcccCCCCC
Q psy1209 38 AVRSEGNQLMSVDGE 52 (61)
Q Consensus 38 aiR~~G~~L~n~~G~ 52 (61)
++|.+|.-+.|++|+
T Consensus 19 a~rg~GgI~VN~~G~ 33 (146)
T d1d4ca3 19 AVRGNGAIVVNREGN 33 (146)
T ss_dssp HHHHTTCEEECTTSC
T ss_pred hhccCCEEEECCccc
Confidence 577778888888886
Done!