RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1209
         (61 letters)



>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 216

 Score = 59.4 bits (143), Expect = 2e-13
 Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 7/67 (10%)

Query: 2  GILGLAKLVADVAPSSIRES-------RKICIDASMSLYQFLIAVRSEGNQLMSVDGEPT 54
          GI GLAKL+ADVAPS+IRE+       RK+ IDASMS+YQFLIAVR  G+ L + +GE T
Sbjct: 1  GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETT 60

Query: 55 RYSVYKL 61
           + +   
Sbjct: 61 SHLMGMF 67


>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 219

 Score = 44.4 bits (104), Expect = 7e-08
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 22 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVYKL 61
          +KI IDA  ++YQFL  +R  +G  LM   G  T +     
Sbjct: 21 KKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLF 61


>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 207

 Score = 43.2 bits (101), Expect = 2e-07
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 22 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVYKL 61
          +K+ ID   +LYQFL ++R  +G+ L +  GE T       
Sbjct: 21 KKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVF 61


>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease)
          {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 217

 Score = 42.0 bits (98), Expect = 4e-07
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 22 RKICIDASMSLYQFLIAVR-SEGNQLMSVDGEPTRYSVY 59
          +KI +DA  +LYQF+  +R  +G  L    G  T +   
Sbjct: 20 KKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSG 58


>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
          encephalitis virus [TaxId: 11084]}
          Length = 302

 Score = 23.2 bits (50), Expect = 2.6
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 12 DVAPSSIRESRKICIDASMS 31
           +   +  ++R+ C+ A +S
Sbjct: 47 AIYQENPAKTREYCLHAKLS 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.366 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 191,092
Number of extensions: 5691
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 5
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)