BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12090
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 216/247 (87%), Positives = 231/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 108/118 (91%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 216/247 (87%), Positives = 231/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 108/118 (91%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust.
Identities = 216/247 (87%), Positives = 231/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 94/117 (80%), Positives = 107/117 (91%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQE 352
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 215/247 (87%), Positives = 231/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 108/118 (91%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust.
Identities = 215/247 (87%), Positives = 230/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 108/118 (91%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 214/247 (86%), Positives = 230/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/119 (79%), Positives = 108/119 (90%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLNIQNKN+SYFVEWIPNN KTAVCDIPPRGLKM++TFIGN
Sbjct: 311 LTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 354
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 214/247 (86%), Positives = 230/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 108/118 (91%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 214/247 (86%), Positives = 230/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 108/118 (91%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 214/247 (86%), Positives = 230/247 (93%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/119 (79%), Positives = 108/119 (90%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN
Sbjct: 311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 354
+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A
Sbjct: 371 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 169/247 (68%), Positives = 201/247 (81%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+ GQCGNQIGA FWE I EHG+D G YHG D+Q ER+NVY+NEAS K+V
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PR+I VDLEPGT+DAVR+ G +FRPDN++FGQS AGN WAKGHYTEGAELVD+V+DV+
Sbjct: 61 PRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVI 120
Query: 121 RKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
R+EAE CD LQGFQ+TH ISKIREE+PDR+M TFS++PSPK SDT V
Sbjct: 121 RREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVE++DETFCIDNEALY+IC RTLKL P+YGDLN+LVS+ MSGVTT L
Sbjct: 181 EPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSL 240
Query: 241 RFPGRMS 247
R+PG+++
Sbjct: 241 RYPGQLN 247
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 112/150 (74%), Gaps = 6/150 (4%)
Query: 212 FRTL---KLTTPTYGDLNHLVSAAMSG---VTTCLRFPGRMSMKEVDEQMLNIQNKNASY 265
FR+L +LT + N + +A +T F G++S+KEV+++M +Q+KN+ Y
Sbjct: 281 FRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDY 340
Query: 266 FVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLG 325
FVEWIPNN +TAVC + P+GL MAATFI N+T+IQELF+R+ DQF +M+KRKAFLHWY
Sbjct: 341 FVEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTS 400
Query: 326 EGMDEMEFTEAASNVLDLISEYQQYQEAAV 355
EGMDE+EF+EA SN+ DL+SEYQQYQEA V
Sbjct: 401 EGMDELEFSEAESNMNDLVSEYQQYQEATV 430
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 208/434 (47%), Gaps = 85/434 (19%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGRMSM-----------------------------KEVDEQMLNIQNKNASY---- 265
LRF G +++ K EQ+ + NA +
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 266 -FVEWIPNNCKTAVC------DIPPRGLKMAATFIGNTTAIQ------------------ 300
V+ P + K C D+ P+ + A I +IQ
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 301 -------------------------ELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTE 335
E + R+ +FD MY ++AF+HWY+GEGM+E EF+E
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 336 AASNVLDLISEYQQ 349
A ++ L +Y++
Sbjct: 421 AREDMAALEKDYEE 434
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 207/434 (47%), Gaps = 85/434 (19%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGRMSM-----------------------------KEVDEQMLNIQNKNASY---- 265
LRF G +++ K EQ+ + NA +
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 266 -FVEWIPNNCKTAVC------DIPPRGLKMAATFIGNTTAIQ------------------ 300
V+ P + K C D+ P+ + A I +IQ
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 301 -------------------------ELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTE 335
E + R+ +FD MY ++AF+HWY+GEGM+E EF+E
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 336 AASNVLDLISEYQQ 349
A ++ L +Y++
Sbjct: 421 AREDMAALEKDYEE 434
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 148/250 (59%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 148/250 (59%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 148/250 (59%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
VRK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTA+ E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + H + ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 152/253 (60%), Gaps = 7/253 (2%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL-----ERINVYYNEAS 55
MRE+ + GQ G QIG WE+ S EHGI P G H + L E + +++E
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDG--HLEDGLSKPKGGEEGFSTFFHETG 58
Query: 56 GSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDA 115
K+VPRAI VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G E++
Sbjct: 59 YGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGD 118
Query: 116 VLDVVRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKV 175
VLD +RK A+ CD LQGF TH + ++ EY + F++ P+P+V
Sbjct: 119 VLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQV 178
Query: 176 SDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSG 235
S +VVEPYN L+ H +E+ D TF +DNEA+Y++C R L + P++ +LN+L++ +S
Sbjct: 179 STSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSS 238
Query: 236 VTTCLRFPGRMSM 248
VT LRF G +++
Sbjct: 239 VTASLRFDGSLNV 251
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRG--------LK 287
+ TCL + G + ++V + ++NK V+W P K +C PP +
Sbjct: 314 MATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVD 373
Query: 288 MAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEY 347
A + NTT+I E ++RI +FD MY ++AF+HWY+GEGM+E EFTEA ++ L +Y
Sbjct: 374 RAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 145/248 (58%), Gaps = 2/248 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAY-HGDSDLQLERINVYYNEASGSKY 59
+REI + GQCGNQI FW + EHG+ G G + + V++++ KY
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 60 VPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDV 119
VPRA+LVDLEPG + + G Q+F + V GA NNWA+G+ EG +++D +++V
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 120 VRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTV 179
+ E LQGF +TH + ++R+ YP + + TFS+VPSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 239
VEPYNA L++ ++++N D +DNEAL+ I L +P Y DLN++++ +S VT
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTAS 239
Query: 240 LRFPGRMS 247
LRFPG+++
Sbjct: 240 LRFPGKLN 247
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 242 FPGRMSMKEVDEQMLNIQNKNASYFVEWIP--NNCKTAVCDIPPRGLKMAATFIGNTTAI 299
F G + K+VDE M I+ K+ +Y ++P K + P G + + N T I
Sbjct: 317 FRGDVKAKDVDENMATIR-KSLNY-ASYMPASGGLKLGYAETAPEGFASSGLALVNHTGI 374
Query: 300 QELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQ 348
+F R+ QFD M+ A+ HWY G+ +A + + L Y+
Sbjct: 375 AAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYR 423
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 148/249 (59%), Gaps = 4/249 (1%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI LQ GQCGNQIG +FW+ + EHGI P + +R +V++ +A Y+P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
RA+L+DLEP + ++ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSP-KVSDT 178
+ +EA+ D L+GF L H + ++ + YP +++ T+S+ P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGRMS 247
LR+PG M+
Sbjct: 242 TLRYPGYMN 250
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 244 GRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP---RGLKMAATFIGNTTAIQ 300
G + +V + + I+ + + F+ W P + + A+ P +++ + N T+I
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSIS 385
Query: 301 ELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASN---VLDLISEYQ 348
LF R Q+D + KR+AFL + E M + F E ++ V LI EY
Sbjct: 386 SLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 436
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 148/249 (59%), Gaps = 4/249 (1%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI LQ GQCGNQIG +FW+ + EHGI P + +R +V++ +A Y+P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
RA+L+DLEP + ++ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRKEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSP-KVSDT 178
+ +EA+ D L+GF L H + ++ + YP +++ T+S+ P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGRMS 247
LR+PG M+
Sbjct: 242 TLRYPGYMN 250
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 244 GRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP---RGLKMAATFIGNTTAIQ 300
G + +V + + I+ + + F+ W P + + A+ P +++ + N T+I
Sbjct: 326 GEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSIS 385
Query: 301 ELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASN---VLDLISEYQ 348
LF R Q+D + KR+AFL + E M + F E ++ V LI EY
Sbjct: 386 SLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 436
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 142/262 (54%), Gaps = 5/262 (1%)
Query: 10 GQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILV 66
GQ GNQI A FW+ + EHGIDP + +++ E+S YVPRAI+V
Sbjct: 12 GQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMV 71
Query: 67 DLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAES 126
DLEP +D V++ G +F P N + GAG N+A G+ G E++ V+ + E +
Sbjct: 72 DLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDK 130
Query: 127 CDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNAT 186
CD + G + H I ++E+Y + + + +++PSP+VS V EPYN
Sbjct: 131 CDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTV 190
Query: 187 LSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRM 246
+++ L + D DNEAL+++ R + +PT DLN L++ A++G+T +RF G +
Sbjct: 191 FALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRFSGFL 250
Query: 247 SMK-EVDEQMLNIQNKNASYFV 267
+++ + E + N+ + + +F+
Sbjct: 251 TVEISLRELLTNLVPQPSLHFL 272
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 269 WIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGM 328
WIP K + P + + + N T I + RI FD +++RKAF +WYL EGM
Sbjct: 349 WIPTAFKIGYVEQPGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGM 408
Query: 329 DEMEFTEAASNVLDLISEYQQYQEA 353
E + ++ +L+ YQ +E+
Sbjct: 409 SEEQINVLRASAQELVQSYQVAEES 433
>pdb|3VHL|A Chain A, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 288
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 3 EICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNE 53
EI H G G GA+F E+I D +D T + +Q+ + Y++E
Sbjct: 46 EISHRLEGFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQITFVEPYFDE 96
>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At
2.8a Resolution
Length = 372
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 166 TFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEIC 211
T ++V P V + V NA + +L ++TD I NE L+EI
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii)
pdb|1W59|A Chain A, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W59|B Chain B, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W5A|A Chain A, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5A|B Chain B, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5B|A Chain A, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|1W5B|B Chain B, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|2VAP|A Chain A, Ftsz Gdp M. Jannaschii
Length = 364
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 166 TFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEIC 211
T ++V P V + V NA + +L ++TD I NE L+EI
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|B Chain B, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|C Chain C, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|D Chain D, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|E Chain E, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|F Chain F, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|G Chain G, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|H Chain H, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|I Chain I, Ftsz W319y Mutant, P1 (m. Jannaschii)
Length = 364
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 166 TFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEIC 211
T ++V P V + V NA + +L ++TD I NE L+EI
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
>pdb|1M2X|A Chain A, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|B Chain B, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|C Chain C, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|D Chain D, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
Length = 223
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 323 YLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 354
Y+ G D+ + + + LDLI+EYQQ Q+A+
Sbjct: 191 YVVAGHDDWKDQRSIQHTLDLINEYQQKQKAS 222
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 36 YHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIF 85
+ GD + R+ V Y +SGS RA LE G+M V S + Q+
Sbjct: 94 FAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMM 143
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 45 ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GAGNNWA 102
E+I+ EASG+ + A+ L GT+D ++ + F+FG + A
Sbjct: 630 EQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVKQVKAILA 689
Query: 103 KGHYTEGAELVDAVLDVVRKEAES 126
KG+ D VLD V KE ES
Sbjct: 690 KGYDPVKWRKKDKVLDAVLKELES 713
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 45 ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GAGNNWA 102
E+I+ EASG+ + A+ L GT+D ++ + F+FG + A
Sbjct: 629 EQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVKQVKAILA 688
Query: 103 KGHYTEGAELVDAVLDVVRKEAES 126
KG+ D VLD V KE ES
Sbjct: 689 KGYDPVKWRKKDKVLDAVLKELES 712
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 45 ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GAGNNWA 102
E+I+ EASG+ + A+ L GT+D ++ + F+FG + A
Sbjct: 629 EQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILA 688
Query: 103 KGHYTEGAELVDAVLDVVRKEAES 126
KG+ D VLD V KE ES
Sbjct: 689 KGYDPVKWRKKDKVLDAVLKELES 712
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 45 ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GAGNNWA 102
E+I+ EASG+ + A+ L GT+D ++ + F+FG + A
Sbjct: 629 EQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILA 688
Query: 103 KGHYTEGAELVDAVLDVVRKEAES 126
KG+ D VLD V KE ES
Sbjct: 689 KGYDPVKWRKKDKVLDAVLKELES 712
>pdb|2HW4|A Chain A, Crystal Structure Of Human Phosphohistidine Phosphatase
Length = 144
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 98 GNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTH 137
G WA+ H A++ D V ++K+ C+CL G +++H
Sbjct: 65 GYKWAEYH----ADIYDKVSGDMQKQGCDCECLGGGRISH 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,527,573
Number of Sequences: 62578
Number of extensions: 428316
Number of successful extensions: 943
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 65
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)