Query psy12090
Match_columns 371
No_of_seqs 178 out of 1364
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:25:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 4E-117 9E-122 832.4 27.8 360 1-360 1-438 (443)
2 PLN00221 tubulin alpha chain; 100.0 7.5E-99 2E-103 757.3 30.5 362 1-362 1-447 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1.6E-97 3E-102 747.3 30.2 354 1-354 1-439 (448)
4 PLN00220 tubulin beta chain; P 100.0 9.7E-97 2E-101 743.6 31.5 354 1-354 1-429 (447)
5 PTZ00010 tubulin beta chain; P 100.0 1.2E-96 3E-101 741.6 30.4 366 1-367 1-441 (445)
6 KOG1374|consensus 100.0 9.1E-95 2E-99 681.9 25.2 353 1-354 2-443 (448)
7 PLN00222 tubulin gamma chain; 100.0 5E-94 1.1E-98 722.4 30.5 354 1-355 2-446 (454)
8 cd02187 beta_tubulin The tubul 100.0 7.2E-93 1.6E-97 711.4 30.2 349 2-350 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 6.3E-93 1.4E-97 713.1 28.5 349 2-350 1-434 (434)
10 cd02188 gamma_tubulin Gamma-tu 100.0 9E-93 2E-97 709.7 27.7 345 2-347 1-431 (431)
11 PTZ00387 epsilon tubulin; Prov 100.0 4.7E-92 1E-96 708.7 30.0 342 1-353 1-452 (465)
12 cd02189 delta_tubulin The tubu 100.0 3.1E-86 6.6E-91 666.7 26.6 340 4-348 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 5.6E-85 1.2E-89 645.2 26.0 304 2-350 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 6.8E-78 1.5E-82 597.4 27.3 306 3-349 1-382 (382)
15 KOG1376|consensus 100.0 3.5E-75 7.5E-80 547.6 14.2 336 1-344 1-406 (407)
16 KOG1375|consensus 100.0 9.4E-58 2E-62 431.5 15.4 281 41-354 5-353 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.7E-54 3.7E-59 422.2 21.9 252 3-296 1-328 (328)
18 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.1E-53 2.4E-58 393.0 9.0 215 3-223 1-215 (216)
19 cd06060 misato Human Misato sh 100.0 7.2E-46 1.6E-50 374.2 23.9 339 2-349 1-493 (493)
20 smart00864 Tubulin Tubulin/Fts 100.0 1.9E-39 4.2E-44 293.2 8.9 185 49-244 3-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 4.8E-32 1E-36 265.3 14.8 291 1-345 1-317 (349)
22 KOG2530|consensus 100.0 7E-32 1.5E-36 260.6 11.7 229 1-244 1-313 (483)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 1.4E-28 3E-33 236.6 13.5 265 4-343 3-274 (303)
24 TIGR00065 ftsZ cell division p 99.9 1.4E-26 3.1E-31 226.1 14.0 202 4-255 20-223 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 3.7E-26 8.1E-31 220.4 12.7 273 4-346 3-278 (304)
26 PRK13018 cell division protein 99.9 7.8E-25 1.7E-29 214.9 13.8 267 4-345 31-303 (378)
27 PRK09330 cell division protein 99.9 5.7E-23 1.2E-27 202.0 12.2 204 3-255 15-220 (384)
28 PF14881 Tubulin_3: Tubulin do 99.9 4.2E-22 9.1E-27 177.6 11.4 152 79-242 14-180 (180)
29 COG0206 FtsZ Cell division GTP 99.5 3.2E-13 6.9E-18 130.7 11.7 142 106-256 75-218 (338)
30 PF10644 Misat_Tub_SegII: Misa 99.4 2.4E-13 5.1E-18 112.8 4.2 65 2-72 1-69 (115)
31 PF03953 Tubulin_C: Tubulin C- 99.1 8.7E-11 1.9E-15 99.1 4.0 68 241-308 56-126 (126)
32 PF13809 Tubulin_2: Tubulin li 98.0 9.9E-05 2.2E-09 72.8 14.1 102 93-195 101-220 (345)
33 smart00865 Tubulin_C Tubulin/F 90.0 0.17 3.6E-06 41.1 1.6 53 245-307 64-119 (120)
34 PLN02847 triacylglycerol lipas 79.3 6.2 0.00013 41.6 7.3 115 48-168 154-287 (633)
35 PF03610 EIIA-man: PTS system 72.3 6.7 0.00014 32.0 4.5 32 112-143 39-70 (116)
36 cd00006 PTS_IIA_man PTS_IIA, P 71.9 9.4 0.0002 31.5 5.4 47 113-163 40-86 (122)
37 PRK14484 phosphotransferase ma 71.3 3.8 8.3E-05 34.4 2.8 29 113-143 41-69 (124)
38 PF06908 DUF1273: Protein of u 70.2 16 0.00034 32.6 6.6 85 112-205 27-111 (177)
39 PF12953 DUF3842: Domain of un 67.4 6.3 0.00014 33.2 3.2 29 141-169 6-35 (131)
40 TIGR00824 EIIA-man PTS system, 65.7 18 0.00039 29.7 5.7 32 113-144 41-72 (116)
41 cd00741 Lipase Lipase. Lipase 50.7 28 0.00061 29.4 4.6 52 104-159 2-53 (153)
42 PF12210 Hrs_helical: Hepatocy 48.4 18 0.00039 28.8 2.7 54 292-350 27-89 (96)
43 TIGR02364 dha_pts dihydroxyace 44.4 21 0.00045 29.9 2.7 30 113-143 41-71 (125)
44 PRK13660 hypothetical protein; 44.0 1E+02 0.0023 27.5 7.3 82 113-203 28-109 (182)
45 COG0572 Udk Uridine kinase [Nu 42.9 29 0.00064 32.0 3.7 27 135-162 9-35 (218)
46 PRK15088 PTS system mannose-sp 42.2 67 0.0015 31.4 6.3 51 113-167 42-92 (322)
47 COG0031 CysK Cysteine synthase 41.2 17 0.00036 35.2 1.9 101 96-213 146-253 (300)
48 cd00519 Lipase_3 Lipase (class 41.2 28 0.0006 31.7 3.3 75 98-177 96-170 (229)
49 PRK09461 ansA cytoplasmic aspa 41.1 86 0.0019 30.8 6.9 93 108-208 63-156 (335)
50 PF09370 TIM-br_sig_trns: TIM- 40.5 15 0.00032 34.9 1.4 36 115-158 2-37 (268)
51 PF03283 PAE: Pectinacetyleste 37.7 39 0.00085 33.6 3.9 83 105-193 132-222 (361)
52 KOG3178|consensus 33.3 48 0.001 32.7 3.6 41 122-167 167-207 (342)
53 cd00411 Asparaginase Asparagin 31.8 1.5E+02 0.0032 29.0 6.8 90 108-205 60-152 (323)
54 COG2893 ManX Phosphotransferas 31.2 1.8E+02 0.0039 24.9 6.5 64 99-167 29-92 (143)
55 PF01713 Smr: Smr domain; Int 31.2 1.4E+02 0.0031 22.4 5.4 53 114-169 9-67 (83)
56 PF04871 Uso1_p115_C: Uso1 / p 31.0 86 0.0019 26.6 4.4 22 329-350 85-106 (136)
57 PRK15414 phosphomannomutase Cp 31.0 3.1E+02 0.0066 28.0 9.3 94 112-206 151-248 (456)
58 KOG2369|consensus 30.3 43 0.00093 34.4 2.8 56 96-157 146-205 (473)
59 PF00710 Asparaginase: Asparag 29.4 1.7E+02 0.0037 28.3 6.8 91 108-205 54-145 (313)
60 PF05728 UPF0227: Uncharacteri 29.0 87 0.0019 28.0 4.4 42 113-162 42-83 (187)
61 PF02879 PGM_PMM_II: Phosphogl 28.8 33 0.00072 27.1 1.5 28 130-157 19-46 (104)
62 PF01764 Lipase_3: Lipase (cla 27.2 51 0.0011 27.0 2.4 56 102-161 35-91 (140)
63 PRK09542 manB phosphomannomuta 27.0 3.3E+02 0.0071 27.7 8.7 90 111-206 144-237 (445)
64 cd03089 PMM_PGM The phosphoman 26.3 2.1E+02 0.0046 28.9 7.2 89 111-206 144-236 (443)
65 PF02353 CMAS: Mycolic acid cy 25.7 1.1E+02 0.0023 29.2 4.6 64 98-168 28-92 (273)
66 PRK14318 glmM phosphoglucosami 25.2 2.8E+02 0.0061 28.2 7.8 42 112-155 157-198 (448)
67 cd03087 PGM_like1 This archaea 25.1 2.9E+02 0.0064 27.9 8.0 88 112-206 145-236 (439)
68 COG1109 {ManB} Phosphomannomut 24.8 3.2E+02 0.0069 28.0 8.2 90 112-206 158-250 (464)
69 TIGR02153 gatD_arch glutamyl-t 24.8 2.4E+02 0.0053 28.5 7.1 91 108-205 120-211 (404)
70 PLN02371 phosphoglucosamine mu 24.3 1.8E+02 0.004 30.8 6.4 73 130-206 261-337 (583)
71 TIGR01732 tiny_TM_bacill conse 24.1 54 0.0012 19.7 1.3 13 140-152 1-13 (26)
72 PRK14317 glmM phosphoglucosami 23.5 4.2E+02 0.0091 27.1 8.8 46 111-156 167-212 (465)
73 cd06408 PB1_NoxR The PB1 domai 23.0 2.5E+02 0.0054 22.0 5.3 52 290-344 15-71 (86)
74 smart00467 GS GS motif. Aa app 23.0 60 0.0013 20.2 1.5 13 140-153 11-23 (30)
75 smart00870 Asparaginase Aspara 22.8 2.6E+02 0.0057 27.2 6.8 95 108-208 57-154 (323)
76 PLN02408 phospholipase A1 22.5 1.8E+02 0.0039 29.1 5.5 63 111-177 179-243 (365)
77 cd05801 PGM_like3 This bacteri 22.3 3.5E+02 0.0076 28.2 8.0 45 111-155 188-233 (522)
78 PTZ00489 glutamate 5-kinase; P 22.1 3.7E+02 0.0079 25.5 7.4 46 155-202 87-132 (264)
79 TIGR00519 asnASE_I L-asparagin 22.1 1.7E+02 0.0037 28.7 5.3 94 108-209 59-158 (336)
80 PF05086 Dicty_REP: Dictyostel 21.5 59 0.0013 35.3 2.0 18 343-360 881-898 (911)
81 COG4053 Uncharacterized protei 21.3 1.5E+02 0.0032 26.9 4.2 58 112-172 67-124 (244)
82 PF13508 Acetyltransf_7: Acety 21.0 1.1E+02 0.0025 22.2 3.1 23 144-166 40-62 (79)
83 COG3969 Predicted phosphoadeno 20.9 2.5E+02 0.0055 27.9 6.0 49 108-161 8-56 (407)
84 KOG4342|consensus 20.7 1E+02 0.0022 33.0 3.5 56 133-191 485-540 (1078)
85 COG4962 CpaF Flp pilus assembl 20.6 78 0.0017 31.4 2.5 37 114-157 160-196 (355)
86 PF12532 DUF3732: Protein of u 20.4 3.1E+02 0.0067 24.7 6.2 40 8-69 70-109 (193)
87 COG0303 MoeA Molybdopterin bio 20.3 2.2E+02 0.0048 28.8 5.8 61 106-173 222-282 (404)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=4.1e-117 Score=832.37 Aligned_cols=360 Identities=55% Similarity=1.017 Sum_probs=350.7
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP 80 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 80 (371)
||||||||+||||||||.+||+++|+||+|.++|.+....+...++.++||+|++.|+|+||||+||+||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999877667777899999999999999999999999999999999999
Q ss_pred CCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCC
Q psy12090 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYP 160 (371)
Q Consensus 81 ~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp 160 (371)
|+.+|+|+|++.+++|+|||||+|+|+.|+++.+.++|+|||++|.||.||||+++||+|||||||+|+.|+|+|+++||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcccc
Q psy12090 161 DRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240 (371)
Q Consensus 161 ~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (371)
||.+.+|+|+|.++.++++|||||++|+++.|.++||+++++||++|++||.+.|++.+|+|.++|++||++++++|+++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---------------------------------------------------------------------------C
Q psy12090 241 RFPG---------------------------------------------------------------------------R 245 (371)
Q Consensus 241 rf~~---------------------------------------------------------------------------~ 245 (371)
|||| +
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 9999 6
Q ss_pred CChHHHHHHHHHhhhcccccceeccCCCccceecCCCC---CCccceeEEeccchHHHHHHHHHHHhHhhhcccccceec
Q psy12090 246 MSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHW 322 (371)
Q Consensus 246 ~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~---~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~ 322 (371)
+++++++.++.+++.|+..+|++|+|+++++++|+.+| .+.++++|+|+|+|+|...|+|+.++|++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 78999999999999999999999999999999999999 688999999999999999999999999999999999999
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy12090 323 YLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGG 360 (371)
Q Consensus 323 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~ 360 (371)
|+++||||+||.||++.+++|..+|++++++..+++++
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~ 438 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE 438 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence 99999999999999999999999999998888766544
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=7.5e-99 Score=757.27 Aligned_cols=362 Identities=42% Similarity=0.796 Sum_probs=334.5
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCc--ccccccccccccCCCCCCCcceeeecCCCCeeccccc
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 78 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~ 78 (371)
||||||||+||||||||.+||+++++||+++++|....... ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643321 2345778999999999999999999999999999999
Q ss_pred CCCCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhh
Q psy12090 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREE 158 (371)
Q Consensus 79 ~~~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (371)
++++.+|+|++++.+++|+|||||+|||..|+++.++++|+||+++|+||+||||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcc
Q psy12090 159 YPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238 (371)
Q Consensus 159 yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (371)
||++.+.+++|+|++..++++++|||++|+|++|.+++|++++|||++|+++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q psy12090 239 CLRFPG-------------------------------------------------------------------------- 244 (371)
Q Consensus 239 ~~rf~~-------------------------------------------------------------------------- 244 (371)
++||||
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 999998
Q ss_pred -CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCC--------CccceeEEeccchHHHHHHHHHHHhHhhhcc
Q psy12090 245 -RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAATFIGNTTAIQELFRRISDQFDSMYK 315 (371)
Q Consensus 245 -~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~ 315 (371)
+++++++.+.+.+++.+++..|++|+|+++++++|.++|. +.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 2334456666666666778899999999999999998874 3568899999999999999999999999999
Q ss_pred cccceeccccCCCChhhHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q psy12090 316 RKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGED 362 (371)
Q Consensus 316 krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~ 362 (371)
||||||||+++||||+||.||+++|++|+++|+++.+...+++++|.
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~~ 447 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEG 447 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999999999999777666644443
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.6e-97 Score=747.33 Aligned_cols=354 Identities=42% Similarity=0.817 Sum_probs=329.9
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCc--ccccccccccccCCCCCCCcceeeecCCCCeeccccc
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 78 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~ 78 (371)
|||||+||+||||||||.+||+++++||+++++|....+.. ...+..++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643221 2345778999999999999999999999999999999
Q ss_pred CCCCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhh
Q psy12090 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREE 158 (371)
Q Consensus 79 ~~~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (371)
++++.+|+|++++++++|+|||||+|||..|+++.++++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcc
Q psy12090 159 YPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238 (371)
Q Consensus 159 yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (371)
||++++++++|+|++..++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..|+|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999766899999999999999999999999999999999999999999899999999999999999999
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q psy12090 239 CLRFPG-------------------------------------------------------------------------- 244 (371)
Q Consensus 239 ~~rf~~-------------------------------------------------------------------------- 244 (371)
++||||
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 999998
Q ss_pred -CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCC--------CccceeEEeccchHHHHHHHHHHHhHhhhcc
Q psy12090 245 -RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAATFIGNTTAIQELFRRISDQFDSMYK 315 (371)
Q Consensus 245 -~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~ 315 (371)
++.++++.+.+.+++.++...|++|+|+++++++|+++|. +.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 2344455666666777788999999999999999998775 3578899999999999999999999999999
Q ss_pred cccceeccccCCCChhhHHHHHHHHHHHHHHHHHHhhcc
Q psy12090 316 RKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 354 (371)
Q Consensus 316 krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~ 354 (371)
||||||||+++||||+||.||+++|++|+++|+++.++.
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999996444
No 4
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=9.7e-97 Score=743.64 Aligned_cols=354 Identities=83% Similarity=1.389 Sum_probs=331.5
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP 80 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 80 (371)
|||||+||+||||||||.+||+++++||+++++|.+....+...+.+++||+|..+++|+||+|+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999887754433334677899999999999999999999999999999999
Q ss_pred CCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCC
Q psy12090 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYP 160 (371)
Q Consensus 81 ~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp 160 (371)
++.+|+|++++++++|+|||||+|||..|+++.++++|+||+++|+||++|||+++||+|||||||+|++|+++|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcccc
Q psy12090 161 DRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240 (371)
Q Consensus 161 ~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (371)
++.+++++|+|++..++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..|+|+++|++||+.++++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999976789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---------------------------------------------------------------------------C
Q psy12090 241 RFPG---------------------------------------------------------------------------R 245 (371)
Q Consensus 241 rf~~---------------------------------------------------------------------------~ 245 (371)
|||| +
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 9999 1
Q ss_pred CChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHHhHhhhcccccceecccc
Q psy12090 246 MSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLG 325 (371)
Q Consensus 246 ~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~ 325 (371)
++++++.+.+.+++.++..+|++|+|+++++++|.++|.+.++++++++|+|+|..+|++++++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 23334445555555567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhcc
Q psy12090 326 EGMDEMEFTEAASNVLDLISEYQQYQEAA 354 (371)
Q Consensus 326 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~ 354 (371)
+||||+||.||+++|++|+++|+++.+..
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~~ 429 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999997654
No 5
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.2e-96 Score=741.64 Aligned_cols=366 Identities=83% Similarity=1.386 Sum_probs=340.1
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP 80 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 80 (371)
|||||+||+||||||||.+||+++++||+++++|.+....+...+..++||+|+.+++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999987654333334567899999999999999999999999999999888
Q ss_pred CCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCC
Q psy12090 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYP 160 (371)
Q Consensus 81 ~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp 160 (371)
++.+|+|++++++++|+|||||+|||..|+++.++++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcccc
Q psy12090 161 DRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240 (371)
Q Consensus 161 ~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (371)
++.+.+++|+|++..++++++|||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999986789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---------------------------------------------------------------------------C
Q psy12090 241 RFPG---------------------------------------------------------------------------R 245 (371)
Q Consensus 241 rf~~---------------------------------------------------------------------------~ 245 (371)
|||| +
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 9998 2
Q ss_pred CChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHHhHhhhcccccceecccc
Q psy12090 246 MSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLG 325 (371)
Q Consensus 246 ~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~ 325 (371)
+.++++.+.+..++.++..+|++|+|+++++++|.++|.+.++++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 34445566666666677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q psy12090 326 EGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNEEG 367 (371)
Q Consensus 326 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~~ 367 (371)
+||||+||.||+++|++|+++|+++.+...+.+++ .||||+
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~~~~~-~~~~~~ 441 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGE-FDEEEE 441 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhcccccccc-ccchhh
Confidence 99999999999999999999999998777666644 444444
No 6
>KOG1374|consensus
Probab=100.00 E-value=9.1e-95 Score=681.86 Aligned_cols=353 Identities=37% Similarity=0.729 Sum_probs=331.8
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP 80 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 80 (371)
||||||||+||||||||.+||+++|.||+|.++|...+..+...++.++||++..++.|+||||+||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 68999999999999999999999999999999999776666777889999999999999999999999999999999999
Q ss_pred CCccccCCccccc--ccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhh
Q psy12090 81 FGQIFRPDNFVFG--QSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREE 158 (371)
Q Consensus 81 ~~~~f~~~~~~~~--~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (371)
|+.+|+|+|+... ++|+|||||.||. .|+++.|+|+|.|+|++|.||+|+||+++||++||||||+||.|+|+|+|+
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999999765 4689999999985 599999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCC-CCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCc
Q psy12090 159 YPDRIMNTFSIVPSPK-VSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVT 237 (371)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (371)
||||.+.+++|||... .+|++|||||++|+|++|.+.+|+++++||.+|.++|.+.+++.+|+|+++|.+||..|++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999863 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-------------------------------------------------------------------------
Q psy12090 238 TCLRFPG------------------------------------------------------------------------- 244 (371)
Q Consensus 238 ~~~rf~~------------------------------------------------------------------------- 244 (371)
.++||||
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 9999998
Q ss_pred -------CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCC---CccceeEEeccchHHHHHHHHHHHhHhhhc
Q psy12090 245 -------RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR---GLKMAATFIGNTTAIQELFRRISDQFDSMY 314 (371)
Q Consensus 245 -------~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~---~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~ 314 (371)
.+.+..+...+.+++.++..+|++|.|.++++++.+..|. .++.|+.+|+|||+|..+|++++.+||||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 3456667777777888888999999999999998766654 688999999999999999999999999999
Q ss_pred ccccceeccccCCCChh---hHHHHHHHHHHHHHHHHHHhhcc
Q psy12090 315 KRKAFLHWYLGEGMDEM---EFTEAASNVLDLISEYQQYQEAA 354 (371)
Q Consensus 315 ~krAflH~Y~~~Gmee~---eF~ea~~~l~~l~~~Y~~~~~~~ 354 (371)
+||||+|+|+++||+++ ||.|+++.|++|+++|..++...
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~ 443 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPD 443 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999988 99999999999999999996554
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=5e-94 Score=722.37 Aligned_cols=354 Identities=35% Similarity=0.674 Sum_probs=324.5
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP 80 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 80 (371)
|||||+||+||||||||.+||+++++||+++++|.+..+.....+..++||+|+.+++|+||||+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999999887644333335678999999999999999999999999999999888
Q ss_pred CCccccCCccccccc--CCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhh
Q psy12090 81 FGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREE 158 (371)
Q Consensus 81 ~~~~f~~~~~~~~~~--g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (371)
++.+|+|++++++++ |+|||||+||+ .|+++.++++|+||+++|.||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 899999999999986 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCC-CCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCc
Q psy12090 159 YPDRIMNTFSIVPSPK-VSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVT 237 (371)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (371)
||++.+++++|+|++. .++++++|||++|+|++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999863 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-------------------------------------------------------------------------
Q psy12090 238 TCLRFPG------------------------------------------------------------------------- 244 (371)
Q Consensus 238 ~~~rf~~------------------------------------------------------------------------- 244 (371)
+++||||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999998
Q ss_pred --------CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCC---CccceeEEeccchHHHHHHHHHHHhHhhh
Q psy12090 245 --------RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR---GLKMAATFIGNTTAIQELFRRISDQFDSM 313 (371)
Q Consensus 245 --------~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~---~~~~s~~~l~Nst~i~~~l~~~~~~~~~m 313 (371)
+++++++.+.+.+++.+++++|++|+|+++++++|.++|. +.++++++|+|+|+|.++|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 0122234444555566667899999999999999999885 57789999999999999999999999999
Q ss_pred cccccceeccccCCCC----hhhHHHHHHHHHHHHHHHHHHhhccc
Q psy12090 314 YKRKAFLHWYLGEGMD----EMEFTEAASNVLDLISEYQQYQEAAV 355 (371)
Q Consensus 314 ~~krAflH~Y~~~Gme----e~eF~ea~~~l~~l~~~Y~~~~~~~~ 355 (371)
|+||||||||+++||+ ++||.||+++|++|+++|++++...+
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y 446 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDY 446 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999993 89999999999999999999875554
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=7.2e-93 Score=711.38 Aligned_cols=349 Identities=89% Similarity=1.444 Sum_probs=326.9
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCC
Q psy12090 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPF 81 (371)
Q Consensus 2 ~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 81 (371)
||||+||+||||||||.+||+++++||+++++|.+....+...+..++||+|..+++|+||+|+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999988876433332345678999999999999999999999999999988888
Q ss_pred CccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCC
Q psy12090 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD 161 (371)
Q Consensus 82 ~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (371)
+.+|+|++++.+++|+|||||+||+..|+++.++++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccC
Q psy12090 162 RIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 241 (371)
Q Consensus 162 ~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (371)
+.+++++|+|++..++++++|||++|+|++|.+++|++++|||++|.++|.+.+++..|+|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999999866699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---------------------------------------------------------------------------CC
Q psy12090 242 FPG---------------------------------------------------------------------------RM 246 (371)
Q Consensus 242 f~~---------------------------------------------------------------------------~~ 246 (371)
||| ++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 998 23
Q ss_pred ChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHHhHhhhcccccceeccccC
Q psy12090 247 SMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGE 326 (371)
Q Consensus 247 ~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~ 326 (371)
.++++.+.+.+++.++...|++|+|+++++++|+++|.+.++++++++|+|+|.++|++++++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 34455555666666777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q psy12090 327 GMDEMEFTEAASNVLDLISEYQQY 350 (371)
Q Consensus 327 Gmee~eF~ea~~~l~~l~~~Y~~~ 350 (371)
||||+||.||++.|++|+++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999986
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=6.3e-93 Score=713.06 Aligned_cols=349 Identities=42% Similarity=0.818 Sum_probs=324.4
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCc--ccccccccccccCCCCCCCcceeeecCCCCeecccccC
Q psy12090 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 79 (371)
Q Consensus 2 ~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~ 79 (371)
||||+||+||||||||.+||+++++||+++++|.+..... ...+..++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987644322 23567899999999999999999999999999999988
Q ss_pred CCCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhC
Q psy12090 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEY 159 (371)
Q Consensus 80 ~~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~y 159 (371)
+++.+|+|++++.+++|+|||||+|||..|+++.++++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccc
Q psy12090 160 PDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 239 (371)
Q Consensus 160 p~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (371)
|++++++++|+|++..++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997667899999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCCCC---------------------------------------------------------------------------
Q psy12090 240 LRFPG--------------------------------------------------------------------------- 244 (371)
Q Consensus 240 ~rf~~--------------------------------------------------------------------------- 244 (371)
+||||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99998
Q ss_pred CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCC--------CccceeEEeccchHHHHHHHHHHHhHhhhccc
Q psy12090 245 RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAATFIGNTTAIQELFRRISDQFDSMYKR 316 (371)
Q Consensus 245 ~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~k 316 (371)
+++++++.+.+.+++.++...|++|+|+++++++|+++|. +.++++++++|+|+|.++|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 2334455555556666777899999999999999998875 34578999999999999999999999999999
Q ss_pred ccceeccccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy12090 317 KAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQY 350 (371)
Q Consensus 317 rAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~ 350 (371)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999873
No 10
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=9e-93 Score=709.72 Aligned_cols=345 Identities=39% Similarity=0.752 Sum_probs=316.7
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCC
Q psy12090 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPF 81 (371)
Q Consensus 2 ~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 81 (371)
||||+||+||||||||.+||+++++||+++++|....+.+...+..++||+|..+++|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999998876543333456789999999999999999999999999999999988
Q ss_pred CccccCCccccccc--CCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhC
Q psy12090 82 GQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEY 159 (371)
Q Consensus 82 ~~~f~~~~~~~~~~--g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~y 159 (371)
+.+|+|++++.+++ |+|||||+||+ .|+++.++++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999987 99999999975 6999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeeCCCCC-CCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcc
Q psy12090 160 PDRIMNTFSIVPSPKV-SDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238 (371)
Q Consensus 160 p~~~i~~~~v~P~~~~-~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (371)
|++.+++++|+|++.. ++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..|+|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998753 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q psy12090 239 CLRFPG-------------------------------------------------------------------------- 244 (371)
Q Consensus 239 ~~rf~~-------------------------------------------------------------------------- 244 (371)
++||||
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999998
Q ss_pred ---CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCC---CccceeEEeccchHHHHHHHHHHHhHhhhccccc
Q psy12090 245 ---RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR---GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKA 318 (371)
Q Consensus 245 ---~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~---~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krA 318 (371)
++.++++.+.+.+++.+..++|++|+|+++++++|.++|. +.++++++++|+|+|.++|++++++|++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 0112233333444555555679999999999999999885 5678999999999999999999999999999999
Q ss_pred ceeccccCCCC---hhhHHHHHHHHHHHHHHH
Q psy12090 319 FLHWYLGEGMD---EMEFTEAASNVLDLISEY 347 (371)
Q Consensus 319 flH~Y~~~Gme---e~eF~ea~~~l~~l~~~Y 347 (371)
|||||+++||| ++||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 11
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=4.7e-92 Score=708.66 Aligned_cols=342 Identities=34% Similarity=0.673 Sum_probs=313.9
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcc-cCCCCCCcCCCcccccccccccccCC-----CC--CCCcceeeecCCCCe
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHG-IDPTGAYHGDSDLQLERINVYYNEAS-----GS--KYVPRAILVDLEPGT 72 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~l~vD~e~~~ 72 (371)
|||||+||+||||||||.+||+++++||+ ++++|.+ .+.+++||++.. .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 6777654 345789998532 23 499999999999999
Q ss_pred ecccccCCCCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHH
Q psy12090 73 MDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMI 152 (371)
Q Consensus 73 i~~i~~~~~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~ll 152 (371)
|++++.++++.+|+|++++++++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCC-------------
Q psy12090 153 SKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTT------------- 219 (371)
Q Consensus 153 e~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~------------- 219 (371)
|.|+|+||++.+++++|||+. .++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 999999999999999999986 688999999999999999999999999999999999998877653
Q ss_pred --------------CCccchhhHHHhhhcCCccccCCCC-----------------------------------------
Q psy12090 220 --------------PTYGDLNHLVSAAMSGVTTCLRFPG----------------------------------------- 244 (371)
Q Consensus 220 --------------~~~~~~N~~ia~~i~~~t~~~rf~~----------------------------------------- 244 (371)
++|+++|++||++|+++|+++||||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 8899999999999999999999999
Q ss_pred ----------------------------------CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCcccee
Q psy12090 245 ----------------------------------RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAA 290 (371)
Q Consensus 245 ----------------------------------~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~ 290 (371)
++.++++.+.+.+++ +..+|++|+|+++++++|.++|.+.++++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk--~~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLK--EQLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHh--ccccccccCCCceEEEeeccCCCCCceeE
Confidence 122233333333343 34789999999999999999999999999
Q ss_pred EEeccchHHHHHHHHHHHhHhhhcccccceeccccCCCChhhHHHHHHHHHHHHHHHHHHhhc
Q psy12090 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353 (371)
Q Consensus 291 ~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 353 (371)
++++|+|+|.++|++++++|++||+||||||||+ +|||++||.||+++|++|+++|++++..
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 7999999999999999999999999733
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=3.1e-86 Score=666.73 Aligned_cols=340 Identities=26% Similarity=0.557 Sum_probs=307.9
Q ss_pred EEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCC--
Q psy12090 4 ICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPF-- 81 (371)
Q Consensus 4 IItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~-- 81 (371)
||+|||||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||+|+||+||+||++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998887653 2245678999999999999999999999999999998653
Q ss_pred CccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCC
Q psy12090 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD 161 (371)
Q Consensus 82 ~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (371)
+.+|+|++++++++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccC
Q psy12090 162 RIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 241 (371)
Q Consensus 162 ~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (371)
+.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+|+|
T Consensus 158 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 999999999986 6899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------C---------------------------C-----------CChHHHHHHHHH------------------
Q psy12090 242 F-P-------G---------------------------R-----------MSMKEVDEQMLN------------------ 257 (371)
Q Consensus 242 f-~-------~---------------------------~-----------~~~~~i~~~~~~------------------ 257 (371)
| | | + ++..++...+.+
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 6 5 2 0 111122111110
Q ss_pred -------------------------h-----------hhcccccceeccCCCccceecCCCCC--CccceeEEeccchHH
Q psy12090 258 -------------------------I-----------QNKNASYFVEWIPNNCKTAVCDIPPR--GLKMAATFIGNTTAI 299 (371)
Q Consensus 258 -------------------------l-----------~~~~~~~~~~w~p~~~~~~~~~~~~~--~~~~s~~~l~Nst~i 299 (371)
+ +.++...|++|+|+++++++|..+|. +.++++++++|+|+|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i 396 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKFRDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVSNSQTI 396 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHHHhccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEeCCchH
Confidence 0 01344678999999999999998876 478999999999999
Q ss_pred HHHHHHHHHhHhhhcccccceeccccCCCChhhHHHHHHHHHHHHHHHH
Q psy12090 300 QELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQ 348 (371)
Q Consensus 300 ~~~l~~~~~~~~~m~~krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 348 (371)
...|++++++|++||+||||||||+++||||+||.||++.|++|+++|+
T Consensus 397 ~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 397 IDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=5.6e-85 Score=645.16 Aligned_cols=304 Identities=38% Similarity=0.733 Sum_probs=284.8
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCC
Q psy12090 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPF 81 (371)
Q Consensus 2 ~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~ 81 (371)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 799999999999999999999999988 67999999999999999999888
Q ss_pred CccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCC
Q psy12090 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD 161 (371)
Q Consensus 82 ~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (371)
+.+|+|++++.+++|+|||||+||+..|+++.++++|+||+++|+||++|||+++||+|||||||+|+.|+|.|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccC
Q psy12090 162 RIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 241 (371)
Q Consensus 162 ~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (371)
+.+++++|+|++. ++++++|||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++|
T Consensus 131 ~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 9999999999984 899999999999999999999999999999997 699999999999999999999
Q ss_pred CCC---------------------------------------------------------------------------CC
Q psy12090 242 FPG---------------------------------------------------------------------------RM 246 (371)
Q Consensus 242 f~~---------------------------------------------------------------------------~~ 246 (371)
||| ++
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 998 12
Q ss_pred ChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHHhHhhhcccccceeccccC
Q psy12090 247 SMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGE 326 (371)
Q Consensus 247 ~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~ 326 (371)
++.++.+.+.+++. ...|++|+|+++++++|+++|.+.++++++++|+|+|..+|++++++|++||+||||||||+++
T Consensus 278 ~~~ei~~~~~~l~~--~~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~e 355 (379)
T cd02190 278 SVSDLRRNIERLKP--KLKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQV 355 (379)
T ss_pred CHHHHHHHHHHHhc--cCcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCC
Confidence 22233333333333 3679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q psy12090 327 GMDEMEFTEAASNVLDLISEYQQY 350 (371)
Q Consensus 327 Gmee~eF~ea~~~l~~l~~~Y~~~ 350 (371)
||||+||.||+++|++|+++|+++
T Consensus 356 G~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 356 GMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=6.8e-78 Score=597.37 Aligned_cols=306 Identities=52% Similarity=0.972 Sum_probs=283.8
Q ss_pred eEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCC
Q psy12090 3 EICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFG 82 (371)
Q Consensus 3 EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~ 82 (371)
|||+|||||||||||.+||+++ |+||+||++|+.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999965 9999999999999998888
Q ss_pred ccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCc
Q psy12090 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDR 162 (371)
Q Consensus 83 ~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (371)
.+|+|++++++++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|+.++|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCC
Q psy12090 163 IMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRF 242 (371)
Q Consensus 163 ~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf 242 (371)
.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++||
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999998655689999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CC---------------------------------------------------------------------------CCC
Q psy12090 243 PG---------------------------------------------------------------------------RMS 247 (371)
Q Consensus 243 ~~---------------------------------------------------------------------------~~~ 247 (371)
|| ++.
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 98 112
Q ss_pred hHHHHHHHHHhhhcccccceeccCCCccceecCCCCC-CccceeEEeccchHHHHHHHHHHHhHhhhcccccceeccccC
Q psy12090 248 MKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGE 326 (371)
Q Consensus 248 ~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~-~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~ 326 (371)
.+++.+.+.+++.+.... +|+|+++++++|+++|. +.++++++++|+|+|.++|++++++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 223333333333333232 89999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q psy12090 327 GMDEMEFTEAASNVLDLISEYQQ 349 (371)
Q Consensus 327 Gmee~eF~ea~~~l~~l~~~Y~~ 349 (371)
||||+||.||+++|++|+++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999974
No 15
>KOG1376|consensus
Probab=100.00 E-value=3.5e-75 Score=547.56 Aligned_cols=336 Identities=43% Similarity=0.795 Sum_probs=303.8
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCc--ccccccccccccCCCCCCCcceeeecCCCCeeccccc
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 78 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~ 78 (371)
|||||+|++||+|.|||+.+|+++|.||+++++|.+..+.+ ...+.++.||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 99999999999999999999999999999999999876443 234467899999999999999999999999 999999
Q ss_pred CCCCccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhh
Q psy12090 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREE 158 (371)
Q Consensus 79 ~~~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (371)
++||.+|||+++++++++++||+|+|+|+.|+|+++..+++||+.++.|..||||.++||+|||||||+++.++|.|..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCcc
Q psy12090 159 YPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238 (371)
Q Consensus 159 yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (371)
|+||..+.++++|.+..+..+++|||++|+.+...+++|+.+++||++.+.+|++++.+..|+|.++|++|+|+++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC--------------------------------------------------------------------CCChHH
Q psy12090 239 CLRFPG--------------------------------------------------------------------RMSMKE 250 (371)
Q Consensus 239 ~~rf~~--------------------------------------------------------------------~~~~~~ 250 (371)
++||+| ++.|++
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyplyap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyrgdvvP~~ 319 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYPLYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKD 319 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCcccccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhccCCcCccc
Confidence 999998 233444
Q ss_pred HHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHHhHhhhcccccceeccccCCCCh
Q psy12090 251 VDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDE 330 (371)
Q Consensus 251 i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~Gmee 330 (371)
+..++..+|.+.+.+|++-. +..-.-.+..++.|+++|+|+|++.+.++..+|+.||.||||||||+++||||
T Consensus 320 v~~A~a~ikt~rt~qfvd~~-------v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwyvgegmee 392 (407)
T KOG1376|consen 320 VNAAIATIKTKRTIQFVDTV-------VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 392 (407)
T ss_pred chHHHHhhhhccccccceee-------ccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeeccCCCccc
Confidence 44444444444444444310 00000014568999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q psy12090 331 MEFTEAASNVLDLI 344 (371)
Q Consensus 331 ~eF~ea~~~l~~l~ 344 (371)
+||.||++.|..|.
T Consensus 393 gef~ea~ed~a~le 406 (407)
T KOG1376|consen 393 GEFSEAREDLAALE 406 (407)
T ss_pred cchhhhhhhHHhhc
Confidence 99999999998875
No 16
>KOG1375|consensus
Probab=100.00 E-value=9.4e-58 Score=431.45 Aligned_cols=281 Identities=88% Similarity=1.404 Sum_probs=261.7
Q ss_pred cccccccccccccCCCCCCCcceeeecCCCCeecccccCCCCccccCCcccccccCCCccCCCcccccchhhHHHHHHHH
Q psy12090 41 DLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120 (371)
Q Consensus 41 ~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~i 120 (371)
+.+..+++++|.+...++|+||+|+||++|++++.++++++..+|+|++ +++| .|+|..|.++.|.
T Consensus 5 ~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----- 70 (369)
T KOG1375|consen 5 DLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----- 70 (369)
T ss_pred cceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-----
Confidence 4567789999999999999999999999999999999999999999999 4333 8899999888776
Q ss_pred HHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeee
Q psy12090 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETF 200 (371)
Q Consensus 121 r~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i 200 (371)
.||++|||++.||+|||||||+|++++..++++||.+++.+++|+|++. ++++++|||+.|++..|.+++|.++
T Consensus 71 -----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ 144 (369)
T KOG1375|consen 71 -----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETF 144 (369)
T ss_pred -----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccc
Confidence 8999999999999999999999999999999999999999999999986 9999999999999999999999999
Q ss_pred EecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCCCC------------------------------------
Q psy12090 201 CIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPG------------------------------------ 244 (371)
Q Consensus 201 ~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~~------------------------------------ 244 (371)
++||++|++||.+.++++.|+ ++|.++||||
T Consensus 145 cidNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q 211 (369)
T KOG1375|consen 145 CIDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ 211 (369)
T ss_pred ccccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccc
Confidence 999999999999999998887 7888888888
Q ss_pred --------------------------------CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEE
Q psy12090 245 --------------------------------RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATF 292 (371)
Q Consensus 245 --------------------------------~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~ 292 (371)
.=+.+++++++.+++.+++.+|++|+|+++|+.+|..||.+.+.+.+.
T Consensus 212 ~~a~tv~eltqq~fdaknmm~a~dyLt~a~~~rGsmkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glkms~tf 291 (369)
T KOG1375|consen 212 YRALTVPELTQQMFDAKNMMTACDYLTVAAMFRGSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLKMSSTF 291 (369)
T ss_pred cccccccccccccccCcchhhhhhhhhhHHHhccchhhhHHHhhhccccCcchhhhhcccccceeeccCCCccccccccc
Confidence 003556778888888899999999999999999999999999999999
Q ss_pred eccchHHHHHHHHHHHhHhhhcccccceeccccCCCChhhHHHHHHHHHHHHHHHHHHhhcc
Q psy12090 293 IGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 354 (371)
Q Consensus 293 l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~ 354 (371)
++|+|+|..+|+++.++|..||+||||+|||+++||+|+||.||..++++|+.+|+++....
T Consensus 292 ~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~ 353 (369)
T KOG1375|consen 292 IGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDA 353 (369)
T ss_pred cccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999995443
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.7e-54 Score=422.16 Aligned_cols=252 Identities=46% Similarity=0.851 Sum_probs=226.3
Q ss_pred eEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCC
Q psy12090 3 EICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFG 82 (371)
Q Consensus 3 EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~ 82 (371)
|||+||+||||||||++||+++ |+||+|+++++.++..+.+
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999843 9999999999999988877
Q ss_pred ccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCc
Q psy12090 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDR 162 (371)
Q Consensus 83 ~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (371)
.+|++.+.+++++|+||||+.||+..|++..++++|+||+++|+||++|||+++||+|||||||+|+++++.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCC
Q psy12090 163 IMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRF 242 (371)
Q Consensus 163 ~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf 242 (371)
++++++|+|+... ++++++||++|+|++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++||
T Consensus 122 ~~~~~~v~P~~~~-~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDE-GVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCC-cchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 9999999999743 369999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CC---------------------------------------------------------------------------CCC
Q psy12090 243 PG---------------------------------------------------------------------------RMS 247 (371)
Q Consensus 243 ~~---------------------------------------------------------------------------~~~ 247 (371)
|| +.+
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 98 112
Q ss_pred hHHHHHHHHHhhhcccccceeccCCCccceecCCCCC-CccceeEEeccc
Q psy12090 248 MKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-GLKMAATFIGNT 296 (371)
Q Consensus 248 ~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~-~~~~s~~~l~Ns 296 (371)
.+++.+.+..++.+.+.. +|+|++++++.|..++. +.+.++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 222333333333333333 89999999999999887 788999999996
No 18
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.1e-53 Score=393.02 Aligned_cols=215 Identities=48% Similarity=0.922 Sum_probs=201.6
Q ss_pred eEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCC
Q psy12090 3 EICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFG 82 (371)
Q Consensus 3 EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~ 82 (371)
|||+|||||||||||.+||+++++||+++++. .......+.++||++...++|+||+|+||+||+++++++..+.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~----~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS----KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS----SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc----ccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998871 22344567799999999999999999999999999999988877
Q ss_pred ccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCc
Q psy12090 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDR 162 (371)
Q Consensus 83 ~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (371)
.+|+|++++.+++|+||||+.||+..|+++.++++++||+++|+||.++||+++||+|||||||++|.|++.|+++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCcc
Q psy12090 163 IMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYG 223 (371)
Q Consensus 163 ~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~ 223 (371)
++++++|+|+. .++++++||++++|++|.+++|++++|||++|.++|.+.+++.+|+|+
T Consensus 157 ~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 99999999995 399999999999999999999999999999999999999999888775
No 19
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=7.2e-46 Score=374.19 Aligned_cols=339 Identities=20% Similarity=0.310 Sum_probs=244.9
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCC----CCCCCcceeeecCCCCeecccc
Q psy12090 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAS----GSKYVPRAILVDLEPGTMDAVR 77 (371)
Q Consensus 2 ~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~l~vD~e~~~i~~i~ 77 (371)
|||||||+||++|+||+||||.|...+...+++. ....+.+++||++. ..+|+||+|++|+++++-..-+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999977765554432 22345799999964 5799999999999998632211
Q ss_pred c----------------CCCCccccCCcccccc-----cCCCccCCCcccc---cchhhHHHHHHHHHHHhhhcCCCCcc
Q psy12090 78 S----------------GPFGQIFRPDNFVFGQ-----SGAGNNWAKGHYT---EGAELVDAVLDVVRKEAESCDCLQGF 133 (371)
Q Consensus 78 ~----------------~~~~~~f~~~~~~~~~-----~g~gnnwa~G~~~---~g~~~~~~~~d~ir~~~E~cD~lqgf 133 (371)
. .-.+..|||++++... .+.+++|+.|+-. .+.+..++++|+||+++|+||+||||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 1 1125569999997663 3455566665521 34567899999999999999999999
Q ss_pred eEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCC----CCccchhhHHHHHHHHHhhccCeeeEecchH-HH
Q psy12090 134 QLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKV----SDTVVEPYNATLSIHQLVENTDETFCIDNEA-LY 208 (371)
Q Consensus 134 ~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~----~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~-L~ 208 (371)
++++|++||| ||+|+.++|.|+||||++.++++++.|.+.. .+.++++||++|++.+|.+++|+++|+.-.. +|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999997532 2578999999999999999999999997543 23
Q ss_pred HHh-----hhcCCCCCCCccchhhHHHhhhcCCccccCCCC-CCChHHHHHH----------------------------
Q psy12090 209 EIC-----FRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPG-RMSMKEVDEQ---------------------------- 254 (371)
Q Consensus 209 ~~~-----~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~~-~~~~~~i~~~---------------------------- 254 (371)
... ...+.+...+..+..+++|.+|.++|.+.|..+ ...+.++...
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~~~m~~l~~~l~~~gRki~~~~~a~P~p~~~~~~l~d~ 313 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSPSSLSGLCDDLSFSGRKVVAAGLALPFPMVGGQDLIDF 313 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCCccHHHHHHHhhhccchhhhhccCCCCCCCCCCcHHHH
Confidence 221 122344455677889999999999999999864 0000000000
Q ss_pred HHH----------------------------------hhh------------------------------cccccceecc
Q psy12090 255 MLN----------------------------------IQN------------------------------KNASYFVEWI 270 (371)
Q Consensus 255 ~~~----------------------------------l~~------------------------------~~~~~~~~w~ 270 (371)
+.. +++ ..+.....-.
T Consensus 314 L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~~~~~~~ 393 (493)
T cd06060 314 LDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSMSALSVL 393 (493)
T ss_pred HHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcchhheec
Confidence 000 000 0000000001
Q ss_pred CCCcccee-------cCCCCCC----------c---cc---eeEEeccchHHHHHHHHHHHhHhhhcccccceeccccCC
Q psy12090 271 PNNCKTAV-------CDIPPRG----------L---KM---AATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEG 327 (371)
Q Consensus 271 p~~~~~~~-------~~~~~~~----------~---~~---s~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~G 327 (371)
+.++++.. ..+...| . -. .++.|.|++++...|+.+..++.|+--+| +|.|...|
T Consensus 394 ~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~~~~~~g 471 (493)
T cd06060 394 PLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KASFFESG 471 (493)
T ss_pred CCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hhcccccc
Confidence 11111100 0000000 0 01 23567899999999999999999999999 88999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q psy12090 328 MDEMEFTEAASNVLDLISEYQQ 349 (371)
Q Consensus 328 mee~eF~ea~~~l~~l~~~Y~~ 349 (371)
+|+|||.|+.+.|.++.++|++
T Consensus 472 ~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 472 LEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred cCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999973
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=1.9e-39 Score=293.25 Aligned_cols=185 Identities=39% Similarity=0.692 Sum_probs=172.3
Q ss_pred cccccCCCCCCCcceeeecCCCCeecccccCCCCccccCCcccccccCCCccCCCcccc-----cchhhHHHHHHHHHHH
Q psy12090 49 VYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELVDAVLDVVRKE 123 (371)
Q Consensus 49 ~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~~f~~~~~~~~~~g~gnnwa~G~~~-----~g~~~~~~~~d~ir~~ 123 (371)
.||.++ ++.||+|++|+++++++.+..++.+..|+|.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 455554 88999999999999999988777778899988888999999999999998 8999999999999999
Q ss_pred hhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEec
Q psy12090 124 AESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCID 203 (371)
Q Consensus 124 ~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~d 203 (371)
+|.| ++|+++||+|||||||+++.+++.++ +||+.. ++++|+|. ..|+++++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999995 47889999999999999999999999999
Q ss_pred chHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCCCC
Q psy12090 204 NEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPG 244 (371)
Q Consensus 204 N~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~~ 244 (371)
|++|.++|.+.+.+ .++|.++|++|++.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999887776 88999999999999999999999997
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.98 E-value=4.8e-32 Score=265.34 Aligned_cols=291 Identities=20% Similarity=0.254 Sum_probs=211.4
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCC
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGP 80 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~ 80 (371)
|+ |..|.+|+||+.|-+++++.- . ..+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~-----------------------~~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----K-----------------------RSGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----C-----------------------CcCCccceeEEEEECCHHHHHhhhc--
Confidence 55 788999999999999987511 0 0112688999999999999887754
Q ss_pred CCccccCCccccccc-----CCCccCCCcccccchhhHHHHHHHHHHHhhhcCC--CCcceEEeecCCCcccCchHHHHH
Q psy12090 81 FGQIFRPDNFVFGQS-----GAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDC--LQGFQLTHSLGGGTGSGMGTLMIS 153 (371)
Q Consensus 81 ~~~~f~~~~~~~~~~-----g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~i~~sl~GGTGSG~~s~lle 153 (371)
.+.|+.++.+++ |+|+|| ..|+++.++.+|.||+++|.||. +|+|+|++|||||||||+++.|++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~-----~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae 121 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADR-----ELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCCh-----HHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHH
Confidence 335666766654 566665 45789999999999999999997 999999999999999999999999
Q ss_pred HHHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhh
Q psy12090 154 KIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAM 233 (371)
Q Consensus 154 ~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i 233 (371)
.++++|| +++++++++|+. .+.++++||++++|++|.+++|.+++|||++|.++|.. + .++|+++|++|++.|
T Consensus 122 ~lke~~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i 194 (349)
T cd02202 122 ELKERYE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRI 194 (349)
T ss_pred HHHHhCC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHH
Confidence 9999999 899999999997 45689999999999999999999999999999998742 2 488999999999999
Q ss_pred cCCccccCC-----CC--CCChHHHHHHHHHhhhcccc--cce----eccCCCccceecCCCCCCccceeEEeccchHHH
Q psy12090 234 SGVTTCLRF-----PG--RMSMKEVDEQMLNIQNKNAS--YFV----EWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQ 300 (371)
Q Consensus 234 ~~~t~~~rf-----~~--~~~~~~i~~~~~~l~~~~~~--~~~----~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~ 300 (371)
+.++.++|| || .++..++...+. ..... .+. .-.+.++...+ .+...+.-...+...+.
T Consensus 195 ~~l~~~~r~~~~~~~g~invD~~dv~~~L~---~~G~~~iG~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~r~~ 266 (349)
T cd02202 195 GLLLRAGEANAGDSVGESVLDASEVINTLS---GGGFATIGYAREDLETGPSDGKFRL-----REEDDEVDEKESISRIT 266 (349)
T ss_pred HHHHHhhhcccCCCCCeEeccHHHHHHHhc---cCCeEEEEEEEEccccccccccccc-----ccccccccccchhhHHH
Confidence 999999999 77 566767655442 21000 000 00000111000 01111122223444555
Q ss_pred HHHHHH-----HHhHhhhcccccceeccccC-CCChhhHHHHHHHHHHHHH
Q psy12090 301 ELFRRI-----SDQFDSMYKRKAFLHWYLGE-GMDEMEFTEAASNVLDLIS 345 (371)
Q Consensus 301 ~~l~~~-----~~~~~~m~~krAflH~Y~~~-Gmee~eF~ea~~~l~~l~~ 345 (371)
...++. +...+--=.+||.+|---.. -|..+++.++.+-|++.+.
T Consensus 267 ~a~~~a~~~~L~~~~d~~~A~~~Li~i~g~~~~l~~~~~~~~~~~i~~~~~ 317 (349)
T cd02202 267 TLARKAAYGELTVPCDLTSADRALIVIAGPPEELSRKGIEDGRKWLDEEIG 317 (349)
T ss_pred HHHHHHHcCCCCCCCCcccCcEEEEEEEeCccccCHHHHHHHHHHHHHHcC
Confidence 555542 22233334588888755333 3777778888877777665
No 22
>KOG2530|consensus
Probab=99.97 E-value=7e-32 Score=260.63 Aligned_cols=229 Identities=24% Similarity=0.384 Sum_probs=173.2
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCC----CCCCCcceeeecCCCCeecc-
Q psy12090 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAS----GSKYVPRAILVDLEPGTMDA- 75 (371)
Q Consensus 1 M~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~l~vD~e~~~i~~- 75 (371)
||||+|||+|+..|++|+||||+|..-.++.++...... ..-..+++|+.+. ..+|+||+|++|++..+-..
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~---~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~ 77 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG---ELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTLK 77 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh---hcCcchhhhhccccccCceeeccceeEEecCccccccc
Confidence 999999999999999999999999877776655332211 1111289999874 36899999999999875210
Q ss_pred -----------------------cccCC-------------------------------------------CCccccCCc
Q psy12090 76 -----------------------VRSGP-------------------------------------------FGQIFRPDN 89 (371)
Q Consensus 76 -----------------------i~~~~-------------------------------------------~~~~f~~~~ 89 (371)
+++.+ .|..|||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~t 157 (483)
T KOG2530|consen 78 YQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRT 157 (483)
T ss_pred cchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccc
Confidence 00000 155689998
Q ss_pred cccccc-----CCCccCCCcccccch-hhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCce
Q psy12090 90 FVFGQS-----GAGNNWAKGHYTEGA-ELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRI 163 (371)
Q Consensus 90 ~~~~~~-----g~gnnwa~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (371)
+...++ ++-++|..|+-..-+ .+.+++.|+||.++|+||.||||+++.++.+|+| |+++.++|.|+|||+++.
T Consensus 158 l~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 158 LNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKA 236 (483)
T ss_pred cccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCc
Confidence 865543 344666777644333 3678999999999999999999999999999996 999999999999999999
Q ss_pred eeEEEeeCCCCC-CCccc---h---hhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCC
Q psy12090 164 MNTFSIVPSPKV-SDTVV---E---PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGV 236 (371)
Q Consensus 164 i~~~~v~P~~~~-~e~~~---~---~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 236 (371)
+.+++..|.+.. .+... . ..|.+|++.+|.+.|++++|+.--.. +. ......+++|.++.++
T Consensus 237 v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ds~ 305 (483)
T KOG2530|consen 237 VFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAFDSI 305 (483)
T ss_pred eeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhcccc
Confidence 999999996532 22222 2 46899999999999999999852221 11 2346678899999999
Q ss_pred ccccCCCC
Q psy12090 237 TTCLRFPG 244 (371)
Q Consensus 237 t~~~rf~~ 244 (371)
|.|.|..+
T Consensus 306 tlptr~~s 313 (483)
T KOG2530|consen 306 TLPTRLIS 313 (483)
T ss_pred cccceecc
Confidence 99888755
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.96 E-value=1.4e-28 Score=236.56 Aligned_cols=265 Identities=19% Similarity=0.219 Sum_probs=193.4
Q ss_pred EEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCCc
Q psy12090 4 ICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQ 83 (371)
Q Consensus 4 IItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~ 83 (371)
|..|.+|+||+.+-+++++. ++ .-.+.+.+|++...++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~----------------------------~~~~~iainTd~~~L~~~~a-~~ki 48 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK----------------------------EGRSAVAVNTDAQDLLGLEA-ENRV 48 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC----------------------------CCccEEEEECcHHHHhcCCC-CcEE
Confidence 77899999999999998651 00 01468999999887766553 2333
Q ss_pred cccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCce
Q psy12090 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRI 163 (371)
Q Consensus 84 ~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (371)
++.++- +...|+|+||..| +++.++++++||+.+|.||. |+|+++||||||||+++.+++.+++.|+
T Consensus 49 ~iG~~~--t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--- 115 (303)
T cd02191 49 LIGQAR--TKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--- 115 (303)
T ss_pred ecCCcc--ccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC---
Confidence 443332 3456899998755 58899999999999999995 7999999999999999999999999996
Q ss_pred eeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCCC
Q psy12090 164 MNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFP 243 (371)
Q Consensus 164 i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~ 243 (371)
.+++|+|.|...|..+++||+.++|++|.+++|+++++||++|.++|.+ +.+ .++|+.+|++|++.++++|.++|||
T Consensus 116 -~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~-~~af~~~N~~ia~~i~~it~~i~~~ 192 (303)
T cd02191 116 -LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASL-EGAFDHADEVLVRAVGGLFGAIEIE 192 (303)
T ss_pred -CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CCh-HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3455555554578899999999999999999999999999999999976 777 5699999999999999999999999
Q ss_pred C--CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHH----h-Hhhhccc
Q psy12090 244 G--RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISD----Q-FDSMYKR 316 (371)
Q Consensus 244 ~--~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~----~-~~~m~~k 316 (371)
| +++..++...+. ... +. .+++ ..-.....+...+++.++ . .+---.+
T Consensus 193 g~invD~~dv~~~l~---~~G---~a-------~ig~------------g~~~g~~~~~~a~~~Al~~pll~~~~~~~A~ 247 (303)
T cd02191 193 GEINVDFADVKNVMD---GGG---VA-------MVGY------------GSEDVTNRATEAVRKAALGPLLLPCEIEGAE 247 (303)
T ss_pred CcccCCHHHHHHHhc---cCC---eE-------EEEE------------EEecCchHHHHHHHHHHhCCCCCCCCcccCC
Confidence 9 566777654432 110 00 0000 001122334444443333 1 2222236
Q ss_pred ccceeccccCCCChhhHHHHHHHHHHH
Q psy12090 317 KAFLHWYLGEGMDEMEFTEAASNVLDL 343 (371)
Q Consensus 317 rAflH~Y~~~Gmee~eF~ea~~~l~~l 343 (371)
++.+|-.-..-|..+|+.++.+.|.+.
T Consensus 248 ~~Lv~i~g~~~l~~~e~~~~~~~i~~~ 274 (303)
T cd02191 248 GALLVMAGPPDLNLKEIERVRKWLEEQ 274 (303)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 788887655567777777777776664
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.94 E-value=1.4e-26 Score=226.13 Aligned_cols=202 Identities=20% Similarity=0.312 Sum_probs=162.0
Q ss_pred EEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCCc
Q psy12090 4 ICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQ 83 (371)
Q Consensus 4 IItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~ 83 (371)
|..|.+|+||+.+-+.+++. ++ .-...+.+|++...++.+.. +.+-
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~----------------------------~~~~~iainTD~~~L~~~~a-~~ki 65 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV----------------------------EGVEFIAINTDAQHLKTTKA-DKKI 65 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC----------------------------CceEEEEEECCHHHHhcCCC-CeEE
Confidence 77899999999999998652 00 01467889998776665542 2333
Q ss_pred cccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCce
Q psy12090 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRI 163 (371)
Q Consensus 84 ~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (371)
++.++ .+...|+|+||+. |+++.++.+++||+.+|.||.+ +|++|||||||||+++.+++.+++ |+ +.
T Consensus 66 ~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~-~l 133 (349)
T TIGR00065 66 LIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG-AL 133 (349)
T ss_pred EcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC-CC
Confidence 33333 1344589999875 6799999999999999999997 999999999999999977766665 64 45
Q ss_pred eeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCCC
Q psy12090 164 MNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFP 243 (371)
Q Consensus 164 i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~ 243 (371)
++++.++|+. .|..+++||+.++|.+|.+++|+++++||++|.++|.+ +.+ ..+|+.+|++|++.+.++|.++|||
T Consensus 134 ~vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i-~~af~~~N~iia~~i~~it~~ir~~ 209 (349)
T TIGR00065 134 TVAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPL-NDAFKVADDVLVRAVKGISELITKP 209 (349)
T ss_pred EEEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCH-HHHHHHHHHHHHHHHHhHHHhhccC
Confidence 5555555654 78899999999999999999999999999999999977 777 4599999999999999999999999
Q ss_pred C--CCChHHHHHHH
Q psy12090 244 G--RMSMKEVDEQM 255 (371)
Q Consensus 244 ~--~~~~~~i~~~~ 255 (371)
| +++..++...+
T Consensus 210 g~iNvDf~dv~~vl 223 (349)
T TIGR00065 210 GLINIDFADVRAVM 223 (349)
T ss_pred CcCcCCHHHHHHHH
Confidence 9 56777776654
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.93 E-value=3.7e-26 Score=220.40 Aligned_cols=273 Identities=17% Similarity=0.244 Sum_probs=193.5
Q ss_pred EEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCCc
Q psy12090 4 ICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQ 83 (371)
Q Consensus 4 IItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~ 83 (371)
|..|.+|+||+.+-+.+++. ++ . -...+.+|+|...++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA-PNKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-CcEE
Confidence 67899999999999998651 00 0 0367899998877766553 3344
Q ss_pred cccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCce
Q psy12090 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRI 163 (371)
Q Consensus 84 ~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (371)
++.++- +...|+|+||+.| ++..++.+|+||+.+|.||.+ +|++|||||||||+++.+++..++ |+ +.
T Consensus 49 ~ig~~~--t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~e-~g-~~ 116 (304)
T cd02201 49 QLGKEL--TRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAKE-MG-AL 116 (304)
T ss_pred EcCCCC--CCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHHH-cC-CC
Confidence 444432 4556899998866 477889999999999999986 999999999999999998776665 64 45
Q ss_pred eeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCCC
Q psy12090 164 MNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFP 243 (371)
Q Consensus 164 i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~ 243 (371)
++++.++|+. .|..+++||+.++|+.|.+++|+++++||++|.++|.+.+.+.. .|+.+|++|++.++++|.++|+|
T Consensus 117 ~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~ 193 (304)
T cd02201 117 TVAVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKP 193 (304)
T ss_pred EEEEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 6666666664 67789999999999999999999999999999999988777744 89999999999999999999999
Q ss_pred C--CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccchHHHHHHHHHHHhHh-hhcccccce
Q psy12090 244 G--RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFD-SMYKRKAFL 320 (371)
Q Consensus 244 ~--~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~~~~~~~-~m~~krAfl 320 (371)
| +++..++...+. ..... .+++.... +.. .=.+++.+.++.-+-... ---.+++.+
T Consensus 194 g~invD~~dv~~vl~---~~G~a----------~ig~g~~~--g~~------r~~~Av~~Al~~pLl~~~~i~~A~~~Lv 252 (304)
T cd02201 194 GLINLDFADVKTVMK---NKGVA----------LMGIGEAS--GEN------RAIEAAEKAISSPLLEDDSISGAKGVLV 252 (304)
T ss_pred ccccCCHHHHHHHhc---cCCeE----------EEEEEEec--Cch------HHHHHHHHHHhCcCcCCCChhcccEEEE
Confidence 9 566767665432 11100 00000000 000 001233333333221111 223477888
Q ss_pred eccccCCCChhhHHHHHHHHHHHHHH
Q psy12090 321 HWYLGEGMDEMEFTEAASNVLDLISE 346 (371)
Q Consensus 321 H~Y~~~Gmee~eF~ea~~~l~~l~~~ 346 (371)
|-.-..-+..+|+.++.+.|.+.+..
T Consensus 253 ~I~~~~~l~l~e~~~~~~~i~~~~~~ 278 (304)
T cd02201 253 NITGGSDLTLEEVNEAAEIIKEKVDP 278 (304)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence 87777777777788877777766543
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.92 E-value=7.8e-25 Score=214.92 Aligned_cols=267 Identities=19% Similarity=0.290 Sum_probs=191.9
Q ss_pred EEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCCc
Q psy12090 4 ICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQ 83 (371)
Q Consensus 4 IItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~~ 83 (371)
|..|.+|+||+.+-+++++. ++ .+ ...+.++++...+..+... .+-
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~~---v~~iaiNTD~q~L~~~~a~-~ki 76 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-------------------------EG---AETIAINTDAQHLAMIKAD-KKI 76 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEECCHHHHhcCCCC-cEE
Confidence 77899999999999998751 10 00 3578999988766654432 233
Q ss_pred cccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCce
Q psy12090 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRI 163 (371)
Q Consensus 84 ~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (371)
++.++ ++...|+|++|..| ++..++.+|.||+.+|.||. |+|++|||||||||+++.|++.+++ ++ ..
T Consensus 77 ~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~l 144 (378)
T PRK13018 77 LIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-AL 144 (378)
T ss_pred ecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CC
Confidence 33332 23456888887665 47788889999999999998 7999999999999999999999997 43 56
Q ss_pred eeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCCC
Q psy12090 164 MNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFP 243 (371)
Q Consensus 164 i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~ 243 (371)
++++++.|+. .|...+..|+.++|.+|.+++|+++++||++|.++| +.+.+. ..|+.+|++|++.+.++|.++|||
T Consensus 145 tv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~ 220 (378)
T PRK13018 145 VVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKP 220 (378)
T ss_pred eEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC
Confidence 7788899986 677889999999999999999999999999999999 777764 589999999999999999999999
Q ss_pred C--CCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccceeEEeccc----hHHHHHHHHHHHhHhhhcccc
Q psy12090 244 G--RMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNT----TAIQELFRRISDQFDSMYKRK 317 (371)
Q Consensus 244 ~--~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s~~~l~Ns----t~i~~~l~~~~~~~~~m~~kr 317 (371)
| +++..++...+. ... . .+ +++. .-... .++.+.++.-+-..+---.++
T Consensus 221 G~iN~Df~dv~~vl~---~~G---~-a~------iG~G------------~a~g~~r~~~Av~~Al~spLL~~di~~A~~ 275 (378)
T PRK13018 221 SLINLDFADVKSVMK---GGG---V-AM------MGVG------------EAKGQNRAMEAVRAALANPLLDVDYRGAKG 275 (378)
T ss_pred CceecCHHHHHHHhc---cCC---E-EE------EEEE------------EecCCcHHHHHHHHHHhCCCcCCChhhhce
Confidence 9 566777765442 110 0 00 0100 00112 223333332221222223466
Q ss_pred cceeccccCCCChhhHHHHHHHHHHHHH
Q psy12090 318 AFLHWYLGEGMDEMEFTEAASNVLDLIS 345 (371)
Q Consensus 318 AflH~Y~~~Gmee~eF~ea~~~l~~l~~ 345 (371)
+.+|---..-|..+|+.++.+.|.+.+.
T Consensus 276 ~Lv~I~g~~~l~l~ev~~~~~~i~~~~~ 303 (378)
T PRK13018 276 ALVHITGGPDLTLKEANEAASRITEELD 303 (378)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 7777665555777777777777766543
No 27
>PRK09330 cell division protein FtsZ; Validated
Probab=99.89 E-value=5.7e-23 Score=201.96 Aligned_cols=204 Identities=21% Similarity=0.321 Sum_probs=161.6
Q ss_pred eEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCCCCeecccccCCCC
Q psy12090 3 EICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFG 82 (371)
Q Consensus 3 EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~i~~~~~~ 82 (371)
.|..|.||+||+.+-+++++. ++ .+ ...+.+++|...++.+... .+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~-------------------------~~---v~fia~NTD~q~L~~~~a~-~k 60 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI-------------------------QG---VEFIAANTDAQALLKSKAP-VK 60 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEeCcHHHHhcCCCC-eE
Confidence 377899999999999998651 10 00 2468888887766554432 23
Q ss_pred ccccCCcccccccCCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCc
Q psy12090 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDR 162 (371)
Q Consensus 83 ~~f~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (371)
-++.++ ++...|+|+||. .|++..++..+.||+.++.||.+ +|+++||||||||.++. +..+..+|+
T Consensus 61 i~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g-- 127 (384)
T PRK09330 61 IQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG-- 127 (384)
T ss_pred EEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC--
Confidence 333332 234458888877 56789999999999999999998 99999999999999995 545555675
Q ss_pred eeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCC
Q psy12090 163 IMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRF 242 (371)
Q Consensus 163 ~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf 242 (371)
+++++|+|.|...|..+++||+.++|..|.+++|.+|+++|++|.+++.+.+.+ ..+|+.+|++|++.+.+++..+++
T Consensus 128 -~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l-~~Af~~ad~vL~~~v~~It~~i~~ 205 (384)
T PRK09330 128 -ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPL-LDAFKAADDVLRQAVQGITDLITK 205 (384)
T ss_pred -CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666665555899999999999999999999999999999999999877776 448999999999999999999999
Q ss_pred CC--CCChHHHHHHH
Q psy12090 243 PG--RMSMKEVDEQM 255 (371)
Q Consensus 243 ~~--~~~~~~i~~~~ 255 (371)
|| +++..++...+
T Consensus 206 pG~iNvDfaDvk~vm 220 (384)
T PRK09330 206 PGLINLDFADVKTVM 220 (384)
T ss_pred CCcccCCHHHHHHHH
Confidence 99 66777877654
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=4.2e-22 Score=177.57 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=115.8
Q ss_pred CCCCccccCCcccccccC-------CCccCCCcccccch-hhHHHHHHH-HHHHhhhcCCCCcceEEeecCCCcccCchH
Q psy12090 79 GPFGQIFRPDNFVFGQSG-------AGNNWAKGHYTEGA-ELVDAVLDV-VRKEAESCDCLQGFQLTHSLGGGTGSGMGT 149 (371)
Q Consensus 79 ~~~~~~f~~~~~~~~~~g-------~gnnwa~G~~~~g~-~~~~~~~d~-ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s 149 (371)
.-.|.+|||++++..++- ..++|..|.-.... +..+++.|+ ||+++|+||.+||||++.++.+|+| |+++
T Consensus 14 Dy~r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas 92 (180)
T PF14881_consen 14 DYNRVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFAS 92 (180)
T ss_pred CCCcceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHH
Confidence 335678999998766542 23556666533332 234566665 9999999999999999999999997 9999
Q ss_pred HHHHHHHhhCCCcee-eEEEeeCCCCCCC-----ccchhhHHHHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCcc
Q psy12090 150 LMISKIREEYPDRIM-NTFSIVPSPKVSD-----TVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYG 223 (371)
Q Consensus 150 ~lle~l~d~yp~~~i-~~~~v~P~~~~~e-----~~~~~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~ 223 (371)
.++|.|+|||||+.+ +.+++.|...... ...+..|.++++..|.++|++++|+.... ...+..
T Consensus 93 ~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~ 161 (180)
T PF14881_consen 93 SLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNW 161 (180)
T ss_pred HHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcH
Confidence 999999999999996 6666554432111 12456899999999999999999997210 235567
Q ss_pred chhhHHHhhhcCCccccCC
Q psy12090 224 DLNHLVSAAMSGVTTCLRF 242 (371)
Q Consensus 224 ~~N~~ia~~i~~~t~~~rf 242 (371)
+..+++|.+|.++|.|.|.
T Consensus 162 htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 162 HTSAILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHHHHhccccCCC
Confidence 9999999999999999984
No 29
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.47 E-value=3.2e-13 Score=130.67 Aligned_cols=142 Identities=19% Similarity=0.300 Sum_probs=122.6
Q ss_pred cccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhhHH
Q psy12090 106 YTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNA 185 (371)
Q Consensus 106 ~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~ 185 (371)
...|++..++..+.|++.++..| -++++.++|||||+|.+|.+++.+++ .+...++++++|+. .|...+.-|+
T Consensus 75 P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~~~A 147 (338)
T COG0206 75 PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRMENA 147 (338)
T ss_pred cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHHHHH
Confidence 77889999999999999988777 45889999999999999999999999 38899999999997 6777788899
Q ss_pred HHHHHHHhhccCeeeEecchHHHHHhhhcCCCCCCCccchhhHHHhhhcCCccccCCCC--CCChHHHHHHHH
Q psy12090 186 TLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPG--RMSMKEVDEQML 256 (371)
Q Consensus 186 ~lsl~~l~e~sd~~i~~dN~~L~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~rf~~--~~~~~~i~~~~~ 256 (371)
..++..|.+++|.+|+++|+.|.+... ...+ ..+|...|.++++.+.+++..+.-|| ++...++...+.
T Consensus 148 ~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~ 218 (338)
T COG0206 148 EEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMK 218 (338)
T ss_pred HHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHh
Confidence 999999999999999999999988764 3333 45788999999999999998888888 566777776543
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.39 E-value=2.4e-13 Score=112.82 Aligned_cols=65 Identities=34% Similarity=0.554 Sum_probs=49.3
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCC----CCCCCcceeeecCCCCe
Q psy12090 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAS----GSKYVPRAILVDLEPGT 72 (371)
Q Consensus 2 ~EIItiqiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~l~vD~e~~~ 72 (371)
|||||||+|+.+|+||+||||.|..-...+++ .....-+++++||++. ..+|+||+|++|++.+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~------~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPD------EKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCcc------ccCcccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 79999999999999999999987443321211 1111235799999974 36999999999999986
No 31
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.08 E-value=8.7e-11 Score=99.08 Aligned_cols=68 Identities=38% Similarity=0.766 Sum_probs=60.1
Q ss_pred CCCCCCChHHHHHHHHHhhhcccccceeccCCCccceecCCCCCCccce---eEEeccchHHHHHHHHHHH
Q psy12090 241 RFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMA---ATFIGNTTAIQELFRRISD 308 (371)
Q Consensus 241 rf~~~~~~~~i~~~~~~l~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~s---~~~l~Nst~i~~~l~~~~~ 308 (371)
-|.|+++++|+.+.+.+++.+..++|++|+|+++|+++|+++|.+...+ +++|+|+|+|.+.|+++.+
T Consensus 56 l~RG~v~~~di~~~i~~ik~~~~~~Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 56 LYRGDVSPKDINEAIAKIKQKNSIQFVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp EEEESSTHHHHHHHHHHHHCTSTTSB-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred ccccccccchhhhHHHhhhhccccceeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 3557999999999999999988899999999999999999999977666 9999999999999999864
No 32
>PF13809 Tubulin_2: Tubulin like
Probab=98.03 E-value=9.9e-05 Score=72.76 Aligned_cols=102 Identities=21% Similarity=0.145 Sum_probs=64.1
Q ss_pred cccCCCccCCCcccccchhhHHHHHHHHHHHhh----h--cCCC--C--cceEEeecCCCcccCchHHHHHHHHhhC---
Q psy12090 93 GQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAE----S--CDCL--Q--GFQLTHSLGGGTGSGMGTLMISKIREEY--- 159 (371)
Q Consensus 93 ~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E----~--cD~l--q--gf~i~~sl~GGTGSG~~s~lle~l~d~y--- 159 (371)
...|+|..-+.|.... ....+++.+.|++.+. + -... + -++|++||+||||||+---++-.||+.+
T Consensus 101 ~~~GAgq~R~~GRla~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~ 179 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAF-FSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQP 179 (345)
T ss_pred hhcCCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhcc
Confidence 4567777777775332 1223344444444444 1 1111 1 2788899999999999999999999976
Q ss_pred --CCceeeEEEeeCCCCCCC---ccchhhHHHHHHHHHhhc
Q psy12090 160 --PDRIMNTFSIVPSPKVSD---TVVEPYNATLSIHQLVEN 195 (371)
Q Consensus 160 --p~~~i~~~~v~P~~~~~e---~~~~~yN~~lsl~~l~e~ 195 (371)
....+..+.++|...... .....-|+.=+|.+|...
T Consensus 180 ~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 180 GQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred cCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 455789999999842211 133345777777666433
No 33
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=90.03 E-value=0.17 Score=41.14 Aligned_cols=53 Identities=28% Similarity=0.434 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHhhhccc-ccceeccC-CCccceecCCCCCCccceeEEecc-chHHHHHHHHHH
Q psy12090 245 RMSMKEVDEQMLNIQNKNA-SYFVEWIP-NNCKTAVCDIPPRGLKMAATFIGN-TTAIQELFRRIS 307 (371)
Q Consensus 245 ~~~~~~i~~~~~~l~~~~~-~~~~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-st~i~~~l~~~~ 307 (371)
+++.+++.+.+..++.+.. ..|+.|+| ..+++ ..+.++++| +|+|...|+++.
T Consensus 64 ~~~~~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~----------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 64 DLTLKEVNEAMERIREKADPDAFIIWGPVIDEEL----------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEccccCCcC----------CCCcEEEEEEecccCccccccC
Confidence 5688899999888877655 78999998 44431 155789999 999999988763
No 34
>PLN02847 triacylglycerol lipase
Probab=79.28 E-value=6.2 Score=41.62 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=64.7
Q ss_pred ccccccCCCCCCCcce-eeecCCCCeecccccCCCC------------ccccCCcccccccCCC----ccCCCcccccch
Q psy12090 48 NVYYNEASGSKYVPRA-ILVDLEPGTMDAVRSGPFG------------QIFRPDNFVFGQSGAG----NNWAKGHYTEGA 110 (371)
Q Consensus 48 ~~~F~e~~~~~~~pR~-l~vD~e~~~i~~i~~~~~~------------~~f~~~~~~~~~~g~g----nnwa~G~~~~g~ 110 (371)
++++....++.|.|.- |++|-+.+.|=-.-.|+.. ..|++..+. ..|.. ..=..|++...+
T Consensus 154 DVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l~--~gG~~n~~~G~AH~Gml~AAr 231 (633)
T PLN02847 154 DVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVLH--DGGVSNLVLGYAHCGMVAAAR 231 (633)
T ss_pred HEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCccccc--ccCcccCcCCccCccHHHHHH
Confidence 4555555567777665 7888777754332223211 112221111 11111 112345555555
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHh--hCCCceeeEEE
Q psy12090 111 ELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIRE--EYPDRIMNTFS 168 (371)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d--~yp~~~i~~~~ 168 (371)
.+.+.+...|++.++++...+=+++=||||||+ ++.+.-.|+. .||+...++|+
T Consensus 232 wI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 232 WIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 667777778888888888776677779998776 4555555664 46665555665
No 35
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=72.34 E-value=6.7 Score=31.99 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCcceEEeecCCCc
Q psy12090 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGT 143 (371)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGT 143 (371)
-.+++.+++++.+++.+.-+|++++.+++|||
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 35667788888888888899999999999886
No 36
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=71.90 E-value=9.4 Score=31.46 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCce
Q psy12090 113 VDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRI 163 (371)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (371)
.+++.+++++.+++.+.-+|++++.++-|||= ..+...+...+++..
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp----~n~~~~~~~~~~~~~ 86 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP----NNAAARLSMEHPPVE 86 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH----HHHHHHHHhcCCCEE
Confidence 45677778888888887889999999998872 333444444444433
No 37
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=71.28 E-value=3.8 Score=34.35 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhcCCCCcceEEeecCCCc
Q psy12090 113 VDAVLDVVRKEAESCDCLQGFQLTHSLGGGT 143 (371)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGT 143 (371)
.+...++|+..+++++. +|++++.+| |||
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gss 69 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSA 69 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CCh
Confidence 34566888999999999 999999999 775
No 38
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=70.21 E-value=16 Score=32.62 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHH
Q psy12090 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQ 191 (371)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~ 191 (371)
+...+.+.|+..+|+ .+. .++.+.+-|+- -.++.++-.|+.+||... ..+++|+...+..- +-..-.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ik--L~~v~Pf~~q~~~W--~~~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIK--LALVLPFENQGNNW--NEANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-E--EEEEESSB-TTTTS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheE--EEEEEcccchhhcC--CHHHHHHHHH
Confidence 345555667777764 222 34444444442 347778888899999644 46788986433321 1123456677
Q ss_pred HhhccCeeeEecch
Q psy12090 192 LVENTDETFCIDNE 205 (371)
Q Consensus 192 l~e~sd~~i~~dN~ 205 (371)
|.+.||-++++...
T Consensus 98 il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 98 ILEQADFVVVVSER 111 (177)
T ss_dssp HHHH-SEEEESSSS
T ss_pred HHHhCCEEEEccCC
Confidence 77888888887654
No 39
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=67.44 E-value=6.3 Score=33.20 Aligned_cols=29 Identities=28% Similarity=0.654 Sum_probs=23.8
Q ss_pred CCcccCchHHHHHHHHhhCCC-ceeeEEEe
Q psy12090 141 GGTGSGMGTLMISKIREEYPD-RIMNTFSI 169 (371)
Q Consensus 141 GGTGSG~~s~lle~l~d~yp~-~~i~~~~v 169 (371)
.|-|.|+|..+++.||.++|+ ..+++...
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 355778999999999999998 67777763
No 40
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=65.71 E-value=18 Score=29.69 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhcCCCCcceEEeecCCCcc
Q psy12090 113 VDAVLDVVRKEAESCDCLQGFQLTHSLGGGTG 144 (371)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTG 144 (371)
.+++.+++++.+++.+.=+|++++.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 55677888888888777789999999999974
No 41
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=50.66 E-value=28 Score=29.43 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=35.4
Q ss_pred cccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhC
Q psy12090 104 GHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEY 159 (371)
Q Consensus 104 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~y 159 (371)
|++.....+...+...+++...++..-+-+++=||+||+ ++..+...++...
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~ 53 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRG 53 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhcc
Confidence 566666677777777777777666666667777999765 4556666666653
No 42
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=48.39 E-value=18 Score=28.77 Aligned_cols=54 Identities=22% Similarity=0.371 Sum_probs=40.4
Q ss_pred EeccchHHHHHHH-------HHHHhHhhhcccccceeccccCCC--ChhhHHHHHHHHHHHHHHHHHH
Q psy12090 292 FIGNTTAIQELFR-------RISDQFDSMYKRKAFLHWYLGEGM--DEMEFTEAASNVLDLISEYQQY 350 (371)
Q Consensus 292 ~l~Nst~i~~~l~-------~~~~~~~~m~~krAflH~Y~~~Gm--ee~eF~ea~~~l~~l~~~Y~~~ 350 (371)
.++|-++|..+|. ++++.-.++--+|+|. ||+ .-..+.||+..|..|..++++=
T Consensus 27 sIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 27 SIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888887 4566777777788655 565 3567999999999999999864
No 43
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=44.40 E-value=21 Score=29.89 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhcCC-CCcceEEeecCCCc
Q psy12090 113 VDAVLDVVRKEAESCDC-LQGFQLTHSLGGGT 143 (371)
Q Consensus 113 ~~~~~d~ir~~~E~cD~-lqgf~i~~sl~GGT 143 (371)
.....++|++.+|+++. =+|++++.++ |||
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 34566778888888866 8899999999 664
No 44
>PRK13660 hypothetical protein; Provisional
Probab=44.02 E-value=1e+02 Score=27.53 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHHH
Q psy12090 113 VDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQL 192 (371)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l 192 (371)
...+.+.|+..+|+ .+. .++.|..=|+- =.++-++-.|+.+||... ..+++|+...++.- .-..-.-+..+
T Consensus 28 K~aL~~~l~~~~e~--G~~--wfi~ggalG~d-~wAaEvvl~LK~~yp~lk--L~~~~PF~~q~~~W--~e~~q~~y~~i 98 (182)
T PRK13660 28 KKAIKRKLIALLEE--GLE--WVIISGQLGVE-LWAAEVVLELKEEYPDLK--LAVITPFEEHGENW--NEANQEKLANI 98 (182)
T ss_pred HHHHHHHHHHHHHC--CCC--EEEECCcchHH-HHHHHHHHHHHhhCCCeE--EEEEeCccchhhcC--CHHHHHHHHHH
Confidence 44455666666663 333 22222221221 137788889999999654 44577886433211 11223445677
Q ss_pred hhccCeeeEec
Q psy12090 193 VENTDETFCID 203 (371)
Q Consensus 193 ~e~sd~~i~~d 203 (371)
.+.||-+..+.
T Consensus 99 ~~~aD~v~~vs 109 (182)
T PRK13660 99 LKQADFVKSIS 109 (182)
T ss_pred HHhCCEEEEec
Confidence 78888888874
No 45
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=42.88 E-value=29 Score=31.98 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=22.4
Q ss_pred EEeecCCCcccCchHHHHHHHHhhCCCc
Q psy12090 135 LTHSLGGGTGSGMGTLMISKIREEYPDR 162 (371)
Q Consensus 135 i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (371)
++-+++||+|||= +.++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5678999999998 66888888988754
No 46
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=42.23 E-value=67 Score=31.42 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEE
Q psy12090 113 VDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTF 167 (371)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~ 167 (371)
.+++.+++++.+++.+.-+|++++.++-|||= ...+-.+..++++..+++=
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP----~N~a~~~~~~~~~v~vItG 92 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP----FNAASRIVVDKENYEVITG 92 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH----HHHHHHHHhccCCeEEEEc
Confidence 56677788888888877789999999999984 2232222234566554443
No 47
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=41.22 E-value=17 Score=35.23 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCC-
Q psy12090 96 GAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPK- 174 (371)
Q Consensus 96 g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~- 174 (371)
..-.||..-|++.|+|++++.... ++ .|+.++ ||| |.-+-+.+.||+.+|+..+ ++|=|...
T Consensus 146 ~NpaN~~aH~~tT~~EI~~~~~g~----------~d--~fVagv--GTG-GTitGvar~Lk~~~p~i~i--v~vdP~~S~ 208 (300)
T COG0031 146 ENPANPEAHYETTGPEIWQQTDGK----------VD--AFVAGV--GTG-GTITGVARYLKERNPNVRI--VAVDPEGSV 208 (300)
T ss_pred CCCccHHHHHhhhHHHHHHHhCCC----------CC--EEEEeC--Ccc-hhHHHHHHHHHhhCCCcEE--EEECCCCCc
Confidence 445667666667776666443332 33 335566 565 6777889999999998544 44445421
Q ss_pred -C--C--Cccch-hhHHHHHHHHHhhccCeeeEecchHHHHHhhh
Q psy12090 175 -V--S--DTVVE-PYNATLSIHQLVENTDETFCIDNEALYEICFR 213 (371)
Q Consensus 175 -~--~--e~~~~-~yN~~lsl~~l~e~sd~~i~~dN~~L~~~~~~ 213 (371)
. + ...+| .=+......-..+..|-++-++++.....+++
T Consensus 209 ~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~ 253 (300)
T COG0031 209 LLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARR 253 (300)
T ss_pred ccCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHH
Confidence 0 1 00011 00111112222344677777777776666543
No 48
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=41.19 E-value=28 Score=31.70 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=47.1
Q ss_pred CccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCC
Q psy12090 98 GNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSD 177 (371)
Q Consensus 98 gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e 177 (371)
+....+|++.....+.+.+...++..++++...+=++.=|||||+ +++.+.-.|+..++...+ ...+|-.|..++
T Consensus 96 ~~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i-~~~tFg~P~vg~ 170 (229)
T cd00519 96 GGKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDV-TVYTFGQPRVGN 170 (229)
T ss_pred CcEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCce-EEEEeCCCCCCC
Confidence 344566777666677777888888888877766666777999765 456666667766533322 233333443444
No 49
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=41.11 E-value=86 Score=30.81 Aligned_cols=93 Identities=20% Similarity=0.206 Sum_probs=56.5
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCC-CCCccchhhHHH
Q psy12090 108 EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPK-VSDTVVEPYNAT 186 (371)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~e~~~~~yN~~ 186 (371)
...+.+.++.+.|+..+ +..+||+|+|+.. | =--++.++..+-...+|-.+++=+-.|... ..|.....++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45677777888887765 5689999999654 4 245677777655545566777778888754 245555555554
Q ss_pred HHHHHHhhccCeeeEecchHHH
Q psy12090 187 LSIHQLVENTDETFCIDNEALY 208 (371)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~~L~ 208 (371)
. +..-....-..++| |+.++
T Consensus 137 ~-~A~~~~~~GV~V~f-~~~i~ 156 (335)
T PRK09461 137 Y-VAANYPINEVTLFF-NNKLF 156 (335)
T ss_pred H-HHcCCCCCeEEEEE-CCEee
Confidence 4 32211223344555 44444
No 50
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=40.48 E-value=15 Score=34.87 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhh
Q psy12090 115 AVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREE 158 (371)
Q Consensus 115 ~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (371)
++++++|+.+.+-..+ +|+|.|+|++++..|.=--+
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~gGaD 37 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEKGGAD 37 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHHTT-S
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHhcCCC
Confidence 6888999998876665 67788999998888765333
No 51
>PF03283 PAE: Pectinacetylesterase
Probab=37.72 E-value=39 Score=33.59 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=48.9
Q ss_pred ccccchhhHHHHHHHHHHH-hhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCC-ceeeEE---EeeCCCC---CC
Q psy12090 105 HYTEGAELVDAVLDVVRKE-AESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD-RIMNTF---SIVPSPK---VS 176 (371)
Q Consensus 105 ~~~~g~~~~~~~~d~ir~~-~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~-~~i~~~---~v~P~~~---~~ 176 (371)
.|-.|....+.+++.|... +.+.+. +++..+-+||.| +-.-++.+++.+|. +.+..+ +.++... ..
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a~~---vlltG~SAGG~g---~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~~~~~~~ 205 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNAKQ---VLLTGCSAGGLG---AILHADYVRDRLPSSVKVKCLSDSGFFLDNPDYSGN 205 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcccce---EEEeccChHHHH---HHHHHHHHHHHhccCceEEEeccccccccccCcccc
Confidence 3456778888888877766 544444 477777777765 33448899999995 333322 2333211 12
Q ss_pred CccchhhHHHHHHHHHh
Q psy12090 177 DTVVEPYNATLSIHQLV 193 (371)
Q Consensus 177 e~~~~~yN~~lsl~~l~ 193 (371)
..+.+.|+.++.++...
T Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (361)
T PF03283_consen 206 PCIRSFYSDVVGLQNWS 222 (361)
T ss_pred hhHHHHHHHHHHHHHhh
Confidence 34445566666665553
No 52
>KOG3178|consensus
Probab=33.29 E-value=48 Score=32.69 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=29.2
Q ss_pred HHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEE
Q psy12090 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTF 167 (371)
Q Consensus 122 ~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~ 167 (371)
+.++.+..+.||-...++|||+| ..+-..+. .||+.-.+++
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 44677777888999999998876 34444455 8998665554
No 53
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=31.79 E-value=1.5e+02 Score=28.98 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=53.8
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCC-CCccchhhHHH
Q psy12090 108 EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKV-SDTVVEPYNAT 186 (371)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~-~e~~~~~yN~~ 186 (371)
...+.+..+.+.|++.+++ .+||+|+|+.. |= --++..+..+-+. +|-.+++=+-.|.... +|.....++++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4566677788888877653 89999999653 32 4456666655444 6667777788887542 34444444444
Q ss_pred HHHHHHhh--ccCeeeEecch
Q psy12090 187 LSIHQLVE--NTDETFCIDNE 205 (371)
Q Consensus 187 lsl~~l~e--~sd~~i~~dN~ 205 (371)
. +....+ .....++|++.
T Consensus 133 ~-~A~~~~~~~~gV~V~f~~~ 152 (323)
T cd00411 133 Y-VAANYDSRGRGVLVVFNDR 152 (323)
T ss_pred H-HHcCcccCCCeEEEEECCE
Confidence 3 332212 33566666544
No 54
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=31.23 E-value=1.8e+02 Score=24.92 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=40.0
Q ss_pred ccCCCcccccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEE
Q psy12090 99 NNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTF 167 (371)
Q Consensus 99 nnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~ 167 (371)
|-++..++. +....+...+.+...++.-|+=+|++|+.++-||| -..++-++..+.|..-+++=
T Consensus 29 nv~~v~~~~-~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGS----P~N~A~~l~~~~~~~~viaG 92 (143)
T COG2893 29 NVEAVDFVP-GEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGS----PFNVASRLAMEGPRVEVIAG 92 (143)
T ss_pred ceEEEEeec-CCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCC----HhHHHHHHHhhCCCceEEec
Confidence 444555432 22334445555666666667778999999999887 45566666667766544443
No 55
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=31.16 E-value=1.4e+02 Score=22.41 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhc--CCCCcceEEeecC----CCcccCchHHHHHHHHhhCCCceeeEEEe
Q psy12090 114 DAVLDVVRKEAESC--DCLQGFQLTHSLG----GGTGSGMGTLMISKIREEYPDRIMNTFSI 169 (371)
Q Consensus 114 ~~~~d~ir~~~E~c--D~lqgf~i~~sl~----GGTGSG~~s~lle~l~d~yp~~~i~~~~v 169 (371)
++....++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 34555566666665 3567789999888 554 78888888876555555555543
No 56
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=31.00 E-value=86 Score=26.62 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=19.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHH
Q psy12090 329 DEMEFTEAASNVLDLISEYQQY 350 (371)
Q Consensus 329 ee~eF~ea~~~l~~l~~~Y~~~ 350 (371)
+.++....+..+..=+.-|+.-
T Consensus 85 EldDLL~ll~Dle~K~~kyk~r 106 (136)
T PF04871_consen 85 ELDDLLVLLGDLEEKRKKYKER 106 (136)
T ss_pred hHHHHHHHHHhHHHHHHHHHHH
Confidence 7788999999999999999885
No 57
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=30.99 E-value=3.1e+02 Score=28.03 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCc---cchhhHHHHH
Q psy12090 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDT---VVEPYNATLS 188 (371)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~---~~~~yN~~ls 188 (371)
+.+...+.|.+.+. .+.++++-|+.+.+.|+|+++.+.|++.|+..--...+++.--.|....... +..+.|--..
T Consensus 151 ~~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 44555555655542 2346899999999999999999988666655311222333322333211111 1222232222
Q ss_pred HHHH-hhccCeeeEecchH
Q psy12090 189 IHQL-VENTDETFCIDNEA 206 (371)
Q Consensus 189 l~~l-~e~sd~~i~~dN~~ 206 (371)
...+ ...+|+.+.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 2222 23479999998775
No 58
>KOG2369|consensus
Probab=30.30 E-value=43 Score=34.36 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=42.0
Q ss_pred CCCccCCCcccccchhhHHHHHHHHHHHhhhcCCCCc----ceEEeecCCCcccCchHHHHHHHHh
Q psy12090 96 GAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQG----FQLTHSLGGGTGSGMGTLMISKIRE 157 (371)
Q Consensus 96 g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqg----f~i~~sl~GGTGSG~~s~lle~l~d 157 (371)
+++-+|-.+| ...+..++...++++.+|..-.+.| ++|-||||| =+.-+.+....+
T Consensus 146 ga~YDwRls~--~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~----l~~lyFl~w~~~ 205 (473)
T KOG2369|consen 146 GAPYDWRLSY--HNSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGG----LYVLYFLKWVEA 205 (473)
T ss_pred ccccchhhcc--CChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCcc----HHHHHHHhcccc
Confidence 6667777777 3467788899999999999999999 788899963 234555555555
No 59
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=29.45 E-value=1.7e+02 Score=28.35 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=49.7
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCC-CCCccchhhHHH
Q psy12090 108 EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPK-VSDTVVEPYNAT 186 (371)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~e~~~~~yN~~ 186 (371)
...+.+.++.+.|++.+++ .+||+|+|+.. |= -.++.++..+-+..++-.+++=+..|... ..|.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 4456677777888877743 99999999653 32 34555555554544566677778888753 345555555555
Q ss_pred HHHHHHhhccCeeeEecch
Q psy12090 187 LSIHQLVENTDETFCIDNE 205 (371)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~ 205 (371)
....+-. ..-.+++|++.
T Consensus 128 ~~A~~~~-~~GV~v~f~~~ 145 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGR 145 (313)
T ss_dssp HHHHSGG-TSSEEEEETTE
T ss_pred HHHhccc-CCceEEEeCCC
Confidence 4444332 44455555544
No 60
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.99 E-value=87 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCc
Q psy12090 113 VDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDR 162 (371)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (371)
.++..+.+.+.++++..-. +.++ ||.+|...+..|.+.|+-+
T Consensus 42 p~~a~~~l~~~i~~~~~~~-~~li-------GSSlGG~~A~~La~~~~~~ 83 (187)
T PF05728_consen 42 PEEAIAQLEQLIEELKPEN-VVLI-------GSSLGGFYATYLAERYGLP 83 (187)
T ss_pred HHHHHHHHHHHHHhCCCCC-eEEE-------EEChHHHHHHHHHHHhCCC
Confidence 4455667777777765333 3444 4555556677777777543
No 61
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=28.80 E-value=33 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=20.7
Q ss_pred CCcceEEeecCCCcccCchHHHHHHHHh
Q psy12090 130 LQGFQLTHSLGGGTGSGMGTLMISKIRE 157 (371)
Q Consensus 130 lqgf~i~~sl~GGTGSG~~s~lle~l~d 157 (371)
..+|.|+.+.+.|+|+.+.+.|++.|.-
T Consensus 19 ~~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 19 KSGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp HTTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3467999999999987777777777644
No 62
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=27.17 E-value=51 Score=26.97 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=36.1
Q ss_pred CCcccccch-hhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCC
Q psy12090 102 AKGHYTEGA-ELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD 161 (371)
Q Consensus 102 a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (371)
..|++..-. ...+.+.+.|++.+++.....=++.=|||||+ ++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 345544444 66677888888888776643334445899654 567777777776654
No 63
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=27.00 E-value=3.3e+02 Score=27.69 Aligned_cols=90 Identities=10% Similarity=0.220 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhh--HHHHH
Q psy12090 111 ELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPY--NATLS 188 (371)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~y--N~~ls 188 (371)
+..+...+.|.+.+. -..++++-|+.+.+.|+|+++.+.+++.|. ..+...--.|.+.......+|- -.+-.
T Consensus 144 ~~~~~Y~~~l~~~i~-~~~i~~lkVvvd~~~Ga~~~~~~~ll~~lg-----~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~ 217 (445)
T PRK09542 144 DVLADYAAFLRSLVD-LSGIRPLKVAVDAGNGMGGHTVPAVLGGLP-----ITLLPLYFELDGTFPNHEANPLDPANLVD 217 (445)
T ss_pred ChHHHHHHHHHHhcc-cccCCCCEEEEECCCCchhHHHHHHHHhCC-----CEEEEEecCcCCCCCCCCcCCCCHHHHHH
Confidence 445555566655542 123579999999999999888888887552 2233332223321111111111 12223
Q ss_pred HHHHh--hccCeeeEecchH
Q psy12090 189 IHQLV--ENTDETFCIDNEA 206 (371)
Q Consensus 189 l~~l~--e~sd~~i~~dN~~ 206 (371)
+..+. ..+|+.+.+|-|+
T Consensus 218 l~~~v~~~~adlGia~DgD~ 237 (445)
T PRK09542 218 LQAFVRETGADIGLAFDGDA 237 (445)
T ss_pred HHHHHHHcCCCEEEEECCCC
Confidence 33332 2389999998776
No 64
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=26.29 E-value=2.1e+02 Score=28.94 Aligned_cols=89 Identities=9% Similarity=0.178 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhhH--HHHH
Q psy12090 111 ELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYN--ATLS 188 (371)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN--~~ls 188 (371)
+..+...+.|.+.+.. ..+++-|+.+...|+|+++.+.+++.|.- .+...--.|.+.......+|.+ .+-.
T Consensus 144 d~~~~Y~~~l~~~i~~--~~~~lkVvvd~~~G~~~~~~~~ll~~lG~-----~v~~i~~~~d~~F~~~~p~p~~~~~l~~ 216 (443)
T cd03089 144 DILPDYIDRLLSDIKL--GKRPLKVVVDAGNGAAGPIAPQLLEALGC-----EVIPLFCEPDGTFPNHHPDPTDPENLED 216 (443)
T ss_pred CCHHHHHHHHHHhccc--ccCCCeEEEECCCCchHHHHHHHHHHCCC-----EEEEecCCCCCCCCCCCcCCCCHHHHHH
Confidence 3445555555555521 13799999999999998888888887632 2333333343321111222211 1112
Q ss_pred HHHH-hh-ccCeeeEecchH
Q psy12090 189 IHQL-VE-NTDETFCIDNEA 206 (371)
Q Consensus 189 l~~l-~e-~sd~~i~~dN~~ 206 (371)
+..+ .+ .+|+.+.+|-|+
T Consensus 217 l~~~v~~~~adlgia~D~Da 236 (443)
T cd03089 217 LIAAVKENGADLGIAFDGDG 236 (443)
T ss_pred HHHHHHHcCCCEEEEecCCc
Confidence 2222 22 379999998776
No 65
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=25.66 E-value=1.1e+02 Score=29.17 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=29.6
Q ss_pred CccCCCcccccchhhHHHHH-HHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEE
Q psy12090 98 GNNWAKGHYTEGAELVDAVL-DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFS 168 (371)
Q Consensus 98 gnnwa~G~~~~g~~~~~~~~-d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~ 168 (371)
.-.|+-|||..+.+-.++.+ .+++..+|+++-=.| .=+-++|.|+| |+ +..+...| +..+..+.
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~----~~~~a~~~-g~~v~git 92 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GL----AIYAAERY-GCHVTGIT 92 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HH----HHHHHHHH---EEEEEE
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HH----HHHHHHHc-CcEEEEEE
Confidence 34566777777666555555 447888888865555 44558887776 33 33444556 44444444
No 66
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=25.18 E-value=2.8e+02 Score=28.18 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHH
Q psy12090 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKI 155 (371)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l 155 (371)
..+...+.|+..+. ...++|-|+.+.+.|+|+++.+.+++.|
T Consensus 157 ~~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~~~~~ll~~l 198 (448)
T PRK14318 157 ATDRYLRHLLGALP--TRLDGLKVVVDCAHGAASGVAPEAYRAA 198 (448)
T ss_pred HHHHHHHHHHHHhc--cccCCCEEEEECCCchHHHHHHHHHHHc
Confidence 34555555665553 2457999999999999999989888887
No 67
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=25.14 E-value=2.9e+02 Score=27.86 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccch--hhHHHHHH
Q psy12090 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE--PYNATLSI 189 (371)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~--~yN~~lsl 189 (371)
+.+...+.|.+.+.. +..++|-|+.+.+.|+|+.+.+.+++.|.- .+..+-..|.+........ +.| +-.+
T Consensus 145 ~~~~Y~~~l~~~~~~-~~~~~lkIvid~~~G~~~~~~~~~l~~lg~-----~v~~~~~~~d~~f~~~~p~p~~~~-l~~l 217 (439)
T cd03087 145 AIDEYIEAILDKVDI-DGGKGLKVVVDCGNGAGSLTTPYLLRELGC-----KVITLNANPDGFFPGRPPEPTPEN-LSEL 217 (439)
T ss_pred cHHHHHHHHHHhcCc-ccCCCCEEEEECCCCchHHHHHHHHHHcCC-----EEEEECCcCCCCCCCCCCCCCHHH-HHHH
Confidence 444445555555431 115799999999999988888888777632 1222222233321111122 222 1122
Q ss_pred HHH--hhccCeeeEecchH
Q psy12090 190 HQL--VENTDETFCIDNEA 206 (371)
Q Consensus 190 ~~l--~e~sd~~i~~dN~~ 206 (371)
..+ ...+|+.+.+|.|+
T Consensus 218 ~~~v~~~~adlgia~D~Dg 236 (439)
T cd03087 218 MELVRATGADLGIAHDGDA 236 (439)
T ss_pred HHHHHhcCCCEEEEEcCCC
Confidence 222 13479999998776
No 68
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=24.78 E-value=3.2e+02 Score=28.01 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCC---CCccchhhHHHHH
Q psy12090 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKV---SDTVVEPYNATLS 188 (371)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~---~e~~~~~yN~~ls 188 (371)
..+...+.|++.+..-..+.++-|+.+.+.|+|+.+.+.+++.|- ..++.....|.... ...+..+.+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 455566666666543346778899999999998777777777754 44555554554321 1223333333232
Q ss_pred HHHHhhccCeeeEecchH
Q psy12090 189 IHQLVENTDETFCIDNEA 206 (371)
Q Consensus 189 l~~l~e~sd~~i~~dN~~ 206 (371)
-.-....+|+.+-+|-|+
T Consensus 233 ~~v~~~~aDlgia~DgDa 250 (464)
T COG1109 233 KAVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHHhcCCCEEEEecCCC
Confidence 222223688888888776
No 69
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=24.77 E-value=2.4e+02 Score=28.53 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=57.5
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCC-CCCccchhhHHH
Q psy12090 108 EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPK-VSDTVVEPYNAT 186 (371)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~e~~~~~yN~~ 186 (371)
...+.+..+.+.|++.++ +..+||+|+|+.. |= -.++..|..+-+..|+=.+++=+-.|... .+|.....++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 445667778888888775 4569999999654 42 45566666554444566777778888653 346655555555
Q ss_pred HHHHHHhhccCeeeEecch
Q psy12090 187 LSIHQLVENTDETFCIDNE 205 (371)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~ 205 (371)
..-.. ..+-.+++|++.
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 43322 345567777664
No 70
>PLN02371 phosphoglucosamine mutase family protein
Probab=24.29 E-value=1.8e+02 Score=30.81 Aligned_cols=73 Identities=12% Similarity=0.292 Sum_probs=41.7
Q ss_pred CCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCC---CccchhhHHHHHHHHHh-hccCeeeEecch
Q psy12090 130 LQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVS---DTVVEPYNATLSIHQLV-ENTDETFCIDNE 205 (371)
Q Consensus 130 lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~---e~~~~~yN~~lsl~~l~-e~sd~~i~~dN~ 205 (371)
+++|-|+.+.+.|+|+++.+.+++.|--+ .+...-.-|..... .....+.|--.....+. ..+|+.|.+|-|
T Consensus 261 ~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgD 336 (583)
T PLN02371 261 LEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTD 336 (583)
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 57999999999999988888888877322 11122222222111 11122333333333332 347999999877
Q ss_pred H
Q psy12090 206 A 206 (371)
Q Consensus 206 ~ 206 (371)
+
T Consensus 337 a 337 (583)
T PLN02371 337 V 337 (583)
T ss_pred c
Confidence 6
No 71
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=24.13 E-value=54 Score=19.65 Aligned_cols=13 Identities=38% Similarity=1.020 Sum_probs=9.1
Q ss_pred CCCcccCchHHHH
Q psy12090 140 GGGTGSGMGTLMI 152 (371)
Q Consensus 140 ~GGTGSG~~s~ll 152 (371)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5788888875544
No 72
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=23.52 E-value=4.2e+02 Score=27.07 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHH
Q psy12090 111 ELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIR 156 (371)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~ 156 (371)
++.+...+.|...+..--..+++-|+.+.+.|+|+++.+.+++.|-
T Consensus 167 ~~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~~~~~~ll~~LG 212 (465)
T PRK14317 167 ELLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAVACAPEVFKALG 212 (465)
T ss_pred ChHHHHHHHHHHhcCcccccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 3445555555544421013579999999999999888888888774
No 73
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=23.03 E-value=2.5e+02 Score=21.99 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=41.5
Q ss_pred eEEeccchHHHHHHHHHHHhHhhhcccccceeccccCC-----CChhhHHHHHHHHHHHH
Q psy12090 290 ATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEG-----MDEMEFTEAASNVLDLI 344 (371)
Q Consensus 290 ~~~l~Nst~i~~~l~~~~~~~~~m~~krAflH~Y~~~G-----mee~eF~ea~~~l~~l~ 344 (371)
...+..+.....+.+++.++|.. +..|.=.|..+| .+.+|+.+|.....+.+
T Consensus 15 ~i~v~~~i~f~dL~~kIrdkf~~---~~~~~iKykDEGD~iti~sq~DLd~Ai~~a~~~~ 71 (86)
T cd06408 15 YIMIGPDTGFADFEDKIRDKFGF---KRRLKIKMKDDGDMITMGDQDDLDMAIDTARSEA 71 (86)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCC---CCceEEEEEcCCCCccccCHHHHHHHHHHHHHHH
Confidence 46677888899999999999874 468888899888 47888888888776643
No 74
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=23.03 E-value=60 Score=20.22 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=8.1
Q ss_pred CCCcccCchHHHHH
Q psy12090 140 GGGTGSGMGTLMIS 153 (371)
Q Consensus 140 ~GGTGSG~~s~lle 153 (371)
..|+|||+ +.+.+
T Consensus 11 tSGSGSG~-p~Lvq 23 (30)
T smart00467 11 TSGSGSGL-PLLVQ 23 (30)
T ss_pred cCCCCCCc-hhHHH
Confidence 45788887 44443
No 75
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.77 E-value=2.6e+02 Score=27.16 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=54.1
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCC-CCCccchhhHHH
Q psy12090 108 EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPK-VSDTVVEPYNAT 186 (371)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~e~~~~~yN~~ 186 (371)
...+.+..+.+.|+..+. -+..+||+|+|+.. |= --++..+..+-+..+|-.+++=+-.|... ..|.....++++
T Consensus 57 ~t~~~w~~la~~i~~~~~-~~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 57 MTPADWLKLAKRINEALA-DDGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHhc-cCCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 345566666677766543 25789999999654 32 44566666555545566677778888753 345555445544
Q ss_pred HHHHHHhh--ccCeeeEecchHHH
Q psy12090 187 LSIHQLVE--NTDETFCIDNEALY 208 (371)
Q Consensus 187 lsl~~l~e--~sd~~i~~dN~~L~ 208 (371)
..-. -.+ ..-..++| |+.++
T Consensus 133 ~~A~-~~~a~~~GV~V~f-~~~i~ 154 (323)
T smart00870 133 RVAA-SPEARGRGVLVVF-NDEIH 154 (323)
T ss_pred HHHc-CcccCCCEEEEEE-CCEee
Confidence 4322 111 22344555 55554
No 76
>PLN02408 phospholipase A1
Probab=22.55 E-value=1.8e+02 Score=29.07 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHhhhcCCC--CcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCC
Q psy12090 111 ELVDAVLDVVRKEAESCDCL--QGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSD 177 (371)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~l--qgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e 177 (371)
.+.+++++.|++.+++...- .-.+.=|||||. ++...+-.|+..++..+.+.+.+|-.|..++
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN 243 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGN 243 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCccc
Confidence 46677888888888876532 223344899644 6777778888887766555566666666665
No 77
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.26 E-value=3.5e+02 Score=28.19 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhh-hcCCCCcceEEeecCCCcccCchHHHHHHH
Q psy12090 111 ELVDAVLDVVRKEAE-SCDCLQGFQLTHSLGGGTGSGMGTLMISKI 155 (371)
Q Consensus 111 ~~~~~~~d~ir~~~E-~cD~lqgf~i~~sl~GGTGSG~~s~lle~l 155 (371)
++.+...+.|.+.+. +.....++-|+.+.+.|+|+.+.+.|++.|
T Consensus 188 ~~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~~~~~~ll~~l 233 (522)
T cd05801 188 DFVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKY 233 (522)
T ss_pred CcHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccHHHHHHHHHHc
Confidence 455555666655552 112346899999999999988888888876
No 78
>PTZ00489 glutamate 5-kinase; Provisional
Probab=22.10 E-value=3.7e+02 Score=25.46 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=26.7
Q ss_pred HHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHHHhhccCeeeEe
Q psy12090 155 IREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCI 202 (371)
Q Consensus 155 l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~l~e~sd~~i~~ 202 (371)
..+.+-+..+.+..++++........+..|+.-++..|.+. .++|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPI 132 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPI 132 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEE
Confidence 44444444555666666543223344455888888888876 34555
No 79
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=22.05 E-value=1.7e+02 Score=28.73 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=56.6
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCC-CCCccchhhHHH
Q psy12090 108 EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPK-VSDTVVEPYNAT 186 (371)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~e~~~~~yN~~ 186 (371)
...+.+..+.+.|++.++ ..+||+|+|+.. |= -.++..+..+-+. +|-.+++=+-.|... .+|.....++++
T Consensus 59 ~tp~~w~~la~~I~~~~~---~~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYD---DYDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 456777788888887775 389999999654 42 4456666654444 666777778888753 345555555555
Q ss_pred HHHHHHhhc-----cCeeeEecchHHHH
Q psy12090 187 LSIHQLVEN-----TDETFCIDNEALYE 209 (371)
Q Consensus 187 lsl~~l~e~-----sd~~i~~dN~~L~~ 209 (371)
..-..- +. -..++++=|+.++.
T Consensus 132 ~~A~~~-~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 132 RAATEY-IAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred HHHcCc-cccccccCceeEEEccCeEee
Confidence 433222 21 22445555666543
No 80
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=21.52 E-value=59 Score=35.31 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=8.9
Q ss_pred HHHHHHHHhhcccCCCCC
Q psy12090 343 LISEYQQYQEAAVDDEGG 360 (371)
Q Consensus 343 l~~~Y~~~~~~~~~~~~~ 360 (371)
|+..|++++.+..+|+++
T Consensus 881 l~~~f~~~~~~d~dE~e~ 898 (911)
T PF05086_consen 881 LISQFQSNGDEDTDEDED 898 (911)
T ss_pred HHHHHHhcCCcccccccc
Confidence 455565555444444333
No 81
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.25 E-value=1.5e+02 Score=26.86 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCC
Q psy12090 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPS 172 (371)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~ 172 (371)
.-..+.|.+|+..|.-|.|.|+ ..--.|.|-|++-..++.-.++||+..|+.|-.+-.
T Consensus 67 vN~aifevlr~y~eg~~Dl~Gi---Se~pdgAGEG~SYAeAa~~~seY~Davi~aFDTYgg 124 (244)
T COG4053 67 VNKAIFEVLRKYAEGFDDLRGI---SEDPDGAGEGLSYAEAASPISEYGDAVIIAFDTYGG 124 (244)
T ss_pred HHHHHHHHHHHHhhcccccccc---cCCCCcCCCCchHhhhcCchhhcCceEEEEEecccc
Confidence 3445778899999998888764 323345577887777777789999999999987654
No 82
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=21.00 E-value=1.1e+02 Score=22.22 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=19.0
Q ss_pred ccCchHHHHHHHHhhCCCceeeE
Q psy12090 144 GSGMGTLMISKIREEYPDRIMNT 166 (371)
Q Consensus 144 GSG~~s~lle~l~d~yp~~~i~~ 166 (371)
|-|+|+.|+..+.+.++.+.+..
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEEE
Confidence 45899999999999998776643
No 83
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=20.93 E-value=2.5e+02 Score=27.89 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=37.1
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCC
Q psy12090 108 EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD 161 (371)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (371)
.++.+.+...++|+..++.-+. |+.|+.||--||+.=.|+-.+++++..
T Consensus 8 ~~~nV~eA~~eRl~~if~~f~~-----VcVSFSGGKDS~lmLhL~~~~ar~~~~ 56 (407)
T COG3969 8 LDENVLEAAIERLEWIFNTFPR-----VCVSFSGGKDSGLMLHLVAEVARENGR 56 (407)
T ss_pred CcchHHHHHHHHHHHHHhcCCe-----EEEEecCCCchhHHHHHHHHHHHHhCC
Confidence 3566788899999998876664 488999999999977766666666543
No 84
>KOG4342|consensus
Probab=20.68 E-value=1e+02 Score=32.99 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=40.9
Q ss_pred ceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCCCCCCccchhhHHHHHHHH
Q psy12090 133 FQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQ 191 (371)
Q Consensus 133 f~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~e~~~~~yN~~lsl~~ 191 (371)
=.++.+.|.| |.|=+..+++.||.. +..-.+.+++|.-+.+-++.|.|.++|.-..
T Consensus 485 gl~lfG~GDG-GGGPT~eML~klrR~--r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtn 540 (1078)
T KOG4342|consen 485 GLFLFGFGDG-GGGPTQEMLDKLRRI--RSLSNTDGVLPRVQLGITVDEFFDAILKRTN 540 (1078)
T ss_pred ceEEEEecCC-CCCCcHHHHHHHHHh--hcccccCCcccceeecCCHHHHHHHHHhhhc
Confidence 3566677777 458899999999886 3445556788887677778888888876543
No 85
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=20.62 E-value=78 Score=31.35 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHh
Q psy12090 114 DAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIRE 157 (371)
Q Consensus 114 ~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 157 (371)
.+.-+.||..+..- ..++ ++||||||=++.+-..+..
T Consensus 160 ~~~a~~L~~av~~r-----~NIL--isGGTGSGKTTlLNal~~~ 196 (355)
T COG4962 160 RRAAKFLRRAVGIR-----CNIL--ISGGTGSGKTTLLNALSGF 196 (355)
T ss_pred HHHHHHHHHHHhhc-----eeEE--EeCCCCCCHHHHHHHHHhc
Confidence 34445566665432 1222 7899999998877666543
No 86
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=20.35 E-value=3.1e+02 Score=24.66 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=26.4
Q ss_pred ecCChhhHHHHHHHHHHHhhcccCCCCCCcCCCcccccccccccccCCCCCCCcceeeecCC
Q psy12090 8 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLE 69 (371)
Q Consensus 8 qiGq~GnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e 69 (371)
.+|-..|.++.|+--.+.. ..||.+.. +.++|+-|++|=-
T Consensus 70 ~~GSgaNwl~~Hla~fLaL---------------------H~~f~~~~-~~~VP~fL~lDQP 109 (193)
T PF12532_consen 70 EMGSGANWLAYHLALFLAL---------------------HEFFAKNE-KRPVPSFLFLDQP 109 (193)
T ss_pred hcCChHHHHHHHHHHHHHH---------------------HHHHHhcC-CCCCCCeeeecCC
Confidence 5788888998887544322 23444332 5789999999933
No 87
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=20.33 E-value=2.2e+02 Score=28.84 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=44.6
Q ss_pred cccchhhHHHHHHHHHHHhhhcCCCCcceEEeecCCCcccCchHHHHHHHHhhCCCceeeEEEeeCCC
Q psy12090 106 YTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSP 173 (371)
Q Consensus 106 ~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~ 173 (371)
+..-++-.+.+.+.|++.+++||-+ ++ .||+.-|-.-.+-+.|+++.+...+.-+.+-|-.
T Consensus 222 ~giv~Dd~~~l~~~i~~a~~~~Dvi---It----sGG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGk 282 (404)
T COG0303 222 LGIVPDDPEALREAIEKALSEADVI---IT----SGGVSVGDADYVKAALERELGEVLFHGVAMKPGK 282 (404)
T ss_pred ccccCCCHHHHHHHHHHhhhcCCEE---EE----eCCccCcchHhHHHHHHhcCCcEEEEeeeecCCC
Confidence 3445677788899999999999966 22 3566667777777777765667778888888864
Done!