RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12090
(371 letters)
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 563 bits (1453), Expect = 0.0
Identities = 221/243 (90%), Positives = 235/243 (96%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI H+QAGQCGNQIGAKFWE+ISDEHG+DPTG Y GDSDLQLERINVY+NEASG KYVP
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVR 121
RAILVDLEPGTMD+VRSGPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVR
Sbjct: 61 RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120
Query: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 181
KEAESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIM TFS+ PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180
Query: 182 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 241
PYNATLS+HQLVEN+DETFCIDNEALY+ICFRTLKLT PTYGDLNHLVSA MSG+TTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240
Query: 242 FPG 244
FPG
Sbjct: 241 FPG 243
Score = 239 bits (612), Expect = 1e-75
Identities = 92/110 (83%), Positives = 104/110 (94%)
Query: 242 FPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQE 301
F GR+SMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN+TAIQE
Sbjct: 316 FRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQE 375
Query: 302 LFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQ 351
LF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ
Sbjct: 376 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 425
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 539 bits (1389), Expect = 0.0
Identities = 209/247 (84%), Positives = 233/247 (94%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+Q GQCGNQIGAKFWE++ DEHGIDPTG YHGDSDLQLERINVYYNEASG +YV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRA+L+DLEPGTMD+VRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKEAE+CDCLQGFQ+ HSLGGGTGSGMGTL+ISKIREEYPDR+M TFS+ PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVEN DE +DNEALY+ICFRTLKLTTP++GDLNHL+SA MSGVT CL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
Query: 241 RFPGRMS 247
RFPG+++
Sbjct: 241 RFPGQLN 247
Score = 243 bits (621), Expect = 1e-76
Identities = 95/145 (65%), Positives = 120/145 (82%), Gaps = 8/145 (5%)
Query: 227 HLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 286
+L ++AM F G+MS KEVDEQM+N+QNKN+SYFVEWIPNN K++VCDIPP+GL
Sbjct: 310 YLTASAM--------FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL 361
Query: 287 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 346
KMA+TFIGN+T+IQE+FRR+S+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 347 YQQYQEAAVDDEGGEDDNEEGDGDA 371
YQQYQ+A D+EG +D EE +
Sbjct: 422 YQQYQDATADEEGEYEDEEEEEEYE 446
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 538 bits (1388), Expect = 0.0
Identities = 213/246 (86%), Positives = 236/246 (95%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIG+KFWE+ISDEHGIDPTG Y GDSDLQLERINVYYNEA+G +YV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRA+L+DLEPGTMD+VR+GP+GQ+FRPDNF+FGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKEAESCDCLQGFQ+THSLGGGTGSGMGTL+ISK+REEYPDRIM TFS+ PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVEN DE+ CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVT CL
Sbjct: 181 EPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240
Query: 241 RFPGRM 246
RFPG++
Sbjct: 241 RFPGQL 246
Score = 242 bits (619), Expect = 2e-76
Identities = 94/131 (71%), Positives = 114/131 (87%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGN 295
+T F GRMS KEVDEQMLN+QNKN+SYFVEWIPNN K++VCDIPP+GLKM+ TFIGN
Sbjct: 311 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGN 370
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAV 355
+TAIQE+FRR+ +QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A V
Sbjct: 371 STAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATV 430
Query: 356 DDEGGEDDNEE 366
++EG D+ EE
Sbjct: 431 EEEGEFDEEEE 441
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 445 bits (1146), Expect = e-156
Identities = 149/246 (60%), Positives = 191/246 (77%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI LQ GQCGNQIG FWE + EHGI P G SD ER +V++ EAS K+V
Sbjct: 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPG +D VR+GP+G +F P+N +FG+ GAGNNWA+GHYT G E++D V+D++
Sbjct: 61 PRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMI 120
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
R+EA+ CD LQGF L HSLGGGTGSG+G+L++ ++REEYP +I TFS+ P+PKVSD VV
Sbjct: 121 RREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYN+ L++H+L+EN+D TF +DNEALY+IC R L++ P+Y DLN L+S MS VTT L
Sbjct: 181 EPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240
Query: 241 RFPGRM 246
RFPG +
Sbjct: 241 RFPGYL 246
Score = 184 bits (469), Expect = 3e-54
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 226 NHLVSAAM---SGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIP 282
N +VS + CL F G + ++V + +Q+K FVEW P K A+C P
Sbjct: 298 NQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRP 357
Query: 283 P---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASN 339
P + ++ + NTT+I E F+RI DQFD M+K++AFLHWY+GEGM+E EF+EA +
Sbjct: 358 PSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEARED 417
Query: 340 VLDLISEYQQYQEAAVDDEGGEDDNEE 366
V DL EY+ ++ + D+ ED+ E
Sbjct: 418 VADLEEEYEAAEQDSYLDD-EEDEEEM 443
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 283 bits (725), Expect = 7e-94
Identities = 104/246 (42%), Positives = 143/246 (58%), Gaps = 40/246 (16%)
Query: 3 EICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPR 62
EI +Q GQ GNQIGAKFWE +
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------- 22
Query: 63 AILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRK 122
+LVD EPG +D SGP+ +F + GAGNNWA GH T G E + +LD++RK
Sbjct: 23 -VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRK 81
Query: 123 EAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEP 182
EAE CD LQGF +THSLGGGTGSG+G ++ ++++EYP R+ TFSI+P P +V P
Sbjct: 82 EAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VIVRP 140
Query: 183 YNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRF 242
YN+ L++H L E++D IDNEAL++IC R L + PT+ +N L++ A+S +TT LRF
Sbjct: 141 YNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200
Query: 243 PGRMSM 248
G +++
Sbjct: 201 DGSLNV 206
Score = 48.9 bits (117), Expect = 2e-06
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-GLKMAATFIGNT 296
L G +S EV E + + + + W P K V PP K++A + N+
Sbjct: 272 LLLVRGPVSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 284 bits (728), Expect = 2e-93
Identities = 108/251 (43%), Positives = 153/251 (60%), Gaps = 41/251 (16%)
Query: 3 EICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPR 62
EI +Q GQCGNQIG KFWE+
Sbjct: 1 EIISIQIGQCGNQIGNKFWEL--------------------------------------- 21
Query: 63 AILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRK 122
ILVDL+P ++ + G ++F P+ V G+ G+GNNWA+G+YT G EL+D +LD +RK
Sbjct: 22 LILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRK 81
Query: 123 EAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEP 182
+ E CD LQGFQ+THSLGGGTGSG+G+L++ + +EYP ++NTFSI PSP+ S VVEP
Sbjct: 82 QVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEP 141
Query: 183 YNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRF 242
YN+ LS++ L+EN+D DNEALY I R L + P++ DLN++++ +S +T LRF
Sbjct: 142 YNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201
Query: 243 PG--RMSMKEV 251
PG ++++
Sbjct: 202 PGYLNFDLRKL 212
Score = 130 bits (330), Expect = 1e-34
Identities = 54/114 (47%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRG-LKMAATFIGN 295
L F G + E+ E + ++NK WIP+ K + C PPR L +A F+ N
Sbjct: 271 AAALIFRGDVFQSEIQEAINKLKNKL--NIQSWIPDGFKVSNCKKPPRAELGKSALFLSN 328
Query: 296 TTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+T+I E R+ ++FD +YKRKAFLHWYLGEGMDEMEFTEA S++ DLI YQ+
Sbjct: 329 STSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 276 bits (707), Expect = 9e-90
Identities = 104/248 (41%), Positives = 160/248 (64%), Gaps = 4/248 (1%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI LQ GQCGNQIG++FW+ + EHGI P G + +R +V++ +A YVP
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVP 60
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDAVLDV 119
RAIL+DLEP ++++++ + ++ P+N + GAGNNWA G Y++G E+ + +LD+
Sbjct: 61 RAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASG-YSQGEEVQEEILDI 119
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVP-SPKVSDT 178
+ +EA+ D L+GF L HS+ GGTGSGMG+ ++ ++ + YP +++ T+S+ P + SD
Sbjct: 120 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDV 179
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VV+PYN+ L++ +L+ N D +DN AL I L + PT+ +N LVS MS TT
Sbjct: 180 VVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239
Query: 239 CLRFPGRM 246
LR+PG M
Sbjct: 240 TLRYPGYM 247
Score = 67.3 bits (165), Expect = 3e-12
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 226 NHLVSAAMSG----VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDI 281
N +VS A ++ G + +V + + I+ + + F+ W P + + A+
Sbjct: 300 NIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKK 359
Query: 282 PP---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEM---EFTE 335
P +++ + N T+I LF RI QFD + KR+AFL Y E M EF E
Sbjct: 360 SPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDE 419
Query: 336 AASNVLDLISEY 347
+ V LI EY
Sbjct: 420 SREVVQSLIEEY 431
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 274 bits (704), Expect = 3e-89
Identities = 109/245 (44%), Positives = 159/245 (64%), Gaps = 2/245 (0%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS--DLQLERINVYYNEASGSKY 59
RE+ + GQ G QIG WE+ EHGI P G D + N +++E K+
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 60 VPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDV 119
VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDR 120
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 179
+RK A++C LQGF + HS GGGTGSG G+L++ ++ +Y + F++ PSP+VS V
Sbjct: 121 IRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAV 180
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 239
VEPYN+ L+ H L+E++D +F +DNEA+Y+IC R L + PTY +LN L++ +S +T
Sbjct: 181 VEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240
Query: 240 LRFPG 244
LRF G
Sbjct: 241 LRFDG 245
Score = 100 bits (250), Expect = 2e-23
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 238 TCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR---GLKMA----- 289
CL + G + K+V+ + I+ K FV+W P K + PP G +A
Sbjct: 314 CCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 373
Query: 290 ATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
+ NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 374 VCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 269 bits (689), Expect = 8e-87
Identities = 110/246 (44%), Positives = 161/246 (65%), Gaps = 2/246 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGSK 58
MRE+ + GQ G Q+G WE+ EHGI P G D ++ +E N +++E K
Sbjct: 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPR + +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A++C LQGF + H++GGGTGSG+G+L++ ++ +Y + F+I PSP+VS
Sbjct: 121 RIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ LS H L+E+TD +DNEA+Y+IC R L + PTY +LN L++ +S +T
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240
Query: 239 CLRFPG 244
LRF G
Sbjct: 241 SLRFDG 246
Score = 98.6 bits (246), Expect = 1e-22
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 11/136 (8%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAV-----CDIPPRGL---KMAA 290
CL + G + K+V+ + I+ K FV+W P K + +P L + A
Sbjct: 316 CLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQY 350
I N+TAI E+F RI +FD MY ++AF+HWY+GEGM+E EF+EA DL + + Y
Sbjct: 376 CMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE---DLAALEKDY 432
Query: 351 QEAAVDDEGGEDDNEE 366
+E + E + +
Sbjct: 433 EEVGAESADEEGEEDV 448
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 264 bits (677), Expect = 6e-85
Identities = 110/250 (44%), Positives = 163/250 (65%), Gaps = 2/250 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A++C LQGF + +++GGGTGSG+G+L++ ++ +Y + F++ PSP+VS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ LS H L+E+TD +DNEA+Y+IC R+L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240
Query: 239 CLRFPGRMSM 248
LRF G +++
Sbjct: 241 SLRFDGALNV 250
Score = 99.9 bits (249), Expect = 3e-23
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 13/138 (9%)
Query: 239 CLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAA 290
CL + G + K+V+ + I+ K FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 291 TFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQY 350
I N+TA+ E+F RI +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y++
Sbjct: 376 CMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE- 434
Query: 351 QEAAVDDEGGEDDNEEGD 368
V E E + +EG+
Sbjct: 435 ----VGAESAEGEGDEGE 448
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 240 bits (614), Expect = 2e-76
Identities = 120/411 (29%), Positives = 188/411 (45%), Gaps = 96/411 (23%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI +Q GQCGNQIG +FW++ EH L+
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH-------------LK-----------------A 30
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVR 121
RA+L+D+E G ++ + GP +F V SGAGNNWA G++ G + +D++L+ +R
Sbjct: 31 RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIR 90
Query: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 181
K AE CD LQ F + HSLGGGTGSG+GT ++ + +E+P+ S+ PS D +
Sbjct: 91 KAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPS-ADDDVITS 149
Query: 182 PYNATLSIHQLVENTDETFCIDNEALYEICFRT---------LKLTT------PTYGDLN 226
PYN+ L++ +L+E+ D I+N+AL + F L LT+ DLN
Sbjct: 150 PYNSVLALRELIEHADCVLPIENQAL--VPFDAMNSIVANLLLNLTSSMRFEGSLNVDLN 207
Query: 227 ------------HLVSAAMSGVTTCLRF-PGRMSMKEV-------DEQMLNIQNKNASY- 265
H + +++S + + ++ + Q++ K+ Y
Sbjct: 208 EITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYL 267
Query: 266 ---------------------------FVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTA 298
FV+W K +C +PP G + + N T
Sbjct: 268 ACALLVRGNVSVSDLRRNIERLKPKLKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTC 327
Query: 299 IQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
I+ F + ++F +YKRKA LH Y GM++ +FTEA ++ +LI EY
Sbjct: 328 IKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESISNLIDEYDY 378
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 234 bits (599), Expect = 2e-76
Identities = 84/221 (38%), Positives = 124/221 (56%), Gaps = 11/221 (4%)
Query: 4 ICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRA 63
I + G GN IG WE++ EHGIDP G ++INV++ E+ Y PR
Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDG-----MLFHADKINVFFEESGDGVYGPRF 55
Query: 64 ILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKE 123
I +D +P ++ +++G +F +N G GAGNN A G+YT E + L+ +RKE
Sbjct: 56 IAIDTDPQVLNEIKAGNK--LFIGNNLTKGLEGAGNNPAVGYYT-HKEAAEESLEEIRKE 112
Query: 124 AESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPY 183
E CD L GF +T LGGGTGSG ++ ++E Y + T ++V P S+ VV PY
Sbjct: 113 LEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELY-GAL--TVAVVTFPFTSEGVVRPY 169
Query: 184 NATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGD 224
NA L + +L+E++D IDN+AL EIC L + +P + +
Sbjct: 170 NAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 228 bits (584), Expect = 2e-74
Identities = 75/203 (36%), Positives = 107/203 (52%), Gaps = 16/203 (7%)
Query: 47 INVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 106
+ P A+ VDLEPG +D VR+ Q P++ G+ AGNNW +G
Sbjct: 1 KIKVFGVG---GGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLG 57
Query: 107 T-----EGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD 161
G E + LD +R+E E D G +T +GGGTG+G + I++I +EY
Sbjct: 58 AGADPEVGREAAEESLDEIREELEGAD---GVFITAGMGGGTGTGAAPV-IAEIAKEYGI 113
Query: 162 RIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPT 221
T ++V P + VV PYNA L + +L E+ D IDN+AL +IC R L L P
Sbjct: 114 L---TVAVVTKPFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRKLPL-RPA 169
Query: 222 YGDLNHLVSAAMSGVTTCLRFPG 244
+ D N L++ A+SG+T +RFPG
Sbjct: 170 FKDANDLLAQAVSGITDLIRFPG 192
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 234 bits (599), Expect = 2e-73
Identities = 98/249 (39%), Positives = 152/249 (61%), Gaps = 4/249 (1%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIP 62
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDAVLDV 119
RA+L+DLEP ++ +++ + ++ +N GAGNNWA G Y +G ++ + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASG-YHQGEQVEEDIMDM 121
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPS-PKVSDT 178
+ +EA+ D L+GF L HS+ GGTGSGMG+ ++ + + Y +++ T+S+ P+ + SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDV 181
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VV+PYN+ L++ +L N D +DN AL I L L PT+ N LVS MS TT
Sbjct: 182 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTT 241
Query: 239 CLRFPGRMS 247
LR+PG M+
Sbjct: 242 TLRYPGYMN 250
Score = 53.7 bits (129), Expect = 6e-08
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 244 GRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP---RGLKMAATFIGNTTAIQ 300
G + +V + + I+ + + F+EW P + + A+ P +++ + N T+I+
Sbjct: 328 GEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIR 387
Query: 301 ELFRRISDQFDSMYKRKAFLHWYLGEGM----DEMEFTEAASNVLDLISEYQQYQEAAVD 356
LF + Q+D + K++AFL Y M D EF E+ V L+ EY+ +
Sbjct: 388 HLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYI 447
Query: 357 DEGGEDD 363
G ED
Sbjct: 448 KWGMEDP 454
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 203 bits (519), Expect = 2e-61
Identities = 93/276 (33%), Positives = 142/276 (51%), Gaps = 29/276 (10%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEH-GIDPTGAYHGDSDLQLERINVYYNEASGSKY 59
REI +Q GQCGNQ+G +FW++ EH I+ Y D E ++ N
Sbjct: 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENL 60
Query: 60 VPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDV 119
RA+LVD+E G ++ + P G +F + FV SGAGNNWA GH G + +D++ +
Sbjct: 61 KARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISES 120
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 179
VR++ E CD LQ F L HSLGGGTGSG+GT ++ + +E+P + PS V D +
Sbjct: 121 VRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPS-AVDDVI 179
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKL---------------------T 218
PYN+ ++ +L+E+ D +DN+AL I L
Sbjct: 180 TSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVA 239
Query: 219 TPT------YGDLNHLVSAAMSGVTTCLRFPGRMSM 248
PT Y +N++V+ +S +T+ +RF G +++
Sbjct: 240 KPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNV 275
Score = 68.6 bits (168), Expect = 1e-12
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 261 KNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFL 320
K + W + KT +C++ P G + + N I+ F + ++F+ +YKRK+ +
Sbjct: 361 KEQLNMIYWNEDGFKTGLCNVSPLGQPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHV 420
Query: 321 HWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 354
H Y E +++ F E + +LI +Y Q A
Sbjct: 421 HHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAE 453
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 195 bits (498), Expect = 2e-58
Identities = 75/237 (31%), Positives = 133/237 (56%), Gaps = 15/237 (6%)
Query: 6 HLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYN--EASGSKYVPRA 63
+Q GQCGNQ+G + ++ ++ E + D + ER E S + + R+
Sbjct: 4 TVQLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIARS 57
Query: 64 ILVDLEPGTMDAVRSGPFGQI--FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVR 121
+LVD+EP +++ S G + N + QSG+GNNWA G+Y G ++ + +LD++R
Sbjct: 58 VLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIR 117
Query: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDR-IMNTFSIVPSP-KVSDTV 179
KE E CD +GF + HSL GGTGSG+G+ + +R+EYP+ ++N IV P + +
Sbjct: 118 KEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLN---IVVWPYTTGEVI 174
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGV 236
V+ YN L++ L E++D ++N+ ++ IC + L + D+N +++ ++ +
Sbjct: 175 VQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASL 231
Score = 48.8 bits (117), Expect = 2e-06
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 266 FVEWIPNNCKTAVCDIPPRGL----KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLH 321
+V W P+ R K + T I L I ++ +M+ A+LH
Sbjct: 361 YVNWSPS-PVRFSISSHKRSFSKYEKSVTLVSNSQTIIDPLDN-ILEKAWNMFASGAYLH 418
Query: 322 WYLGEGMDEMEFTEAASNVLDLISEYQ 348
Y G++E +F +A + + +I+ Y+
Sbjct: 419 QYEKYGLEEEDFLDAFATLEQIIASYK 445
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 116 bits (292), Expect = 8e-32
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 226 NHLVSAAMSG---VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIP 282
N +V+ ++ L G +S KEV + + IQ KN++ FVEWIPN+ K A+CD+P
Sbjct: 38 NMMVACDPRHGKYLSCALLIRGDVSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVP 97
Query: 283 PRGLKM---AATFIGNTTAIQELFRRISD 308
P GL + + NTTAIQELF+RI +
Sbjct: 98 PYGLPGSDVSGLMLANTTAIQELFKRILE 126
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 55.4 bits (134), Expect = 2e-08
Identities = 54/236 (22%), Positives = 84/236 (35%), Gaps = 48/236 (20%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
RE+ LQ G N +G +W + G DP L R Y P
Sbjct: 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPASELDHDVLYR--EGRTRQGQVTYTP 58
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNW-----AKGH----------- 105
R +L+DL+ GT+ + +++ + V N W A+ H
Sbjct: 59 RLLLLDLK-GTLGHLPEEGSLKVYNLEASV-------NVWSDYLYARLHPRSINVINQYN 110
Query: 106 ----------YTEGAEL------VDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGT 149
+ +G L + D +R E CD LQGFQ+ L G SG+G
Sbjct: 111 HDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVGA 169
Query: 150 LMISKIREEYPDRIMNTFSIVP---SPKVSDT-VVEPYNATLSIHQLVENTDETFC 201
+ +++EY + + P SD + N L + QL E++ F
Sbjct: 170 KCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSS-LFV 224
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 54.7 bits (132), Expect = 2e-08
Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 50/209 (23%)
Query: 10 GQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLE 69
GQ G +I +++ SG Y A+ ++
Sbjct: 9 GQAGGRIVDALNR----------------------------HDKRSGFGYCVGALAINTA 40
Query: 70 PGTMDAVRSGPFGQIFRPDNFVFGQS-------GAGNNWAKGHYTEGAELV-DAVLDVVR 121
+ ++ P D + GQS GA E E V A+ D
Sbjct: 41 KNDLKGLKHIP-----AEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGT 95
Query: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 181
+A+ + LGGGTGSG G +++K +E + + ++P+ +
Sbjct: 96 SDAD------AILVIAGLGGGTGSG-GAPVLAKELKERYEEPVYALGVLPAR--EEGERY 146
Query: 182 PYNATLSIHQLVENTDETFCIDNEALYEI 210
NA S+ L E D DN+A
Sbjct: 147 SANAARSLDALSEEADAIILFDNDAWKRK 175
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 48.3 bits (116), Expect = 3e-07
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 245 RMSMKEVDEQMLNIQNKNAS-YFVEWIPNNCKTAVCDIPPRGLKMAATFIGN-TTAIQEL 302
+++KEV+E M I+ K F+ W P + L + T I L
Sbjct: 64 DLTLKEVNEAMERIREKADPDAFIIWGPVIDEE---------LGGDEIRVTVIATGIGSL 114
Query: 303 FRRISD 308
F+R+S+
Sbjct: 115 FKRLSE 120
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 39.9 bits (93), Expect = 0.002
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 133 FQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQL 192
+T LGGGTG+G G ++++ + T ++V P + + NA L
Sbjct: 88 VFITAGLGGGTGTG-GAPVVAEHLKRIG---TLTVAVVTLPFSDEGGIRMLNAAEGFQTL 143
Query: 193 VENTDETFCIDNEALYEI 210
V D I NE L +I
Sbjct: 144 VREVDNLMVIPNEKLRQI 161
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 39.6 bits (93), Expect = 0.002
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 135 LTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVE 194
+T +GGGTG+G ++++I +E + +P +E NA I +L E
Sbjct: 101 VTAGMGGGTGTG-AAPVVAEIAKEL-GALTVAVVTLPFSFEGSPRME--NAEEGIEELRE 156
Query: 195 NTDETFCIDNEALYEI 210
D I N+ L +
Sbjct: 157 VVDTLIVIPNDKLLKG 172
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 38.4 bits (90), Expect = 0.002
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 128 DCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATL 187
D L +L + +GMG +I +I EE +++ V +++P T
Sbjct: 75 DGLAVLELEDEIDVIVIAGMGGTLIREILEEGKEKL---------KGVERLILQPNIHTY 125
Query: 188 SIHQ-LVEN----TDETFCIDNEALYEI 210
+ + L N ET ++ +YEI
Sbjct: 126 ELREWLSANSYEIKAETILEEDGKIYEI 153
>gnl|CDD|218278 pfam04816, DUF633, Family of unknown function (DUF633). This
family of proteins are uncharacterized have no known
function.
Length = 204
Score = 35.0 bits (81), Expect = 0.039
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 128 DCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATL 187
D L + + +GMG L+I+ I E+ +++ V +++P N
Sbjct: 56 DGLAVLEELDVIDVIVIAGMGGLLIADILEQGKNKL---------AGVKRLILQPNNNEE 106
Query: 188 SIHQ-LVEN----TDETFCIDNEALYEI--CFRTLKLTTPTYGDL 225
+ + L N ET + +YEI + K + DL
Sbjct: 107 ELREWLSNNSYQIKAETILEERGKIYEILVAEKGKKPDKLSEEDL 151
>gnl|CDD|220832 pfam10644, Misat_Myo_SegII, Misato Segment II myosin-like domain.
The misato protein contains three distinct, conserved
domains, segments I, II and III. Segments I and III are
common to Tubulins pfam00091, but segment II aligns
with myosin heavy chain sequences from D. melanogaster
(PIR C35815), rabbit (SP P04460), and human (PIR
S12458). Segment II of misato is a major contributor to
its greater length compared with the various tubulins.
The most significant sequence similarities to this
54-amino acid region are from a motif found in the
heavy chains of myosins from different organisms. A
comparison of segment II with the vertebrate myosin
heavy chains reveals that it is homologous to a myosin
peptide in the hinge region linking the S2 and LMM
domains. Segment II also contains heptad repeats which
are characteristic of the myosin tail alpha-helical
coiled-coils.
Length = 103
Score = 32.7 bits (75), Expect = 0.058
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI---NVYYNE---AS 55
REI LQ GQ N +G FW +Y E + +V + E
Sbjct: 4 REIITLQLGQYANYVGTHFWNQQE---------SYFTYDPDAPESLIDHDVLFREGLTQD 54
Query: 56 GSK-YVPRAILVDLE 69
G + Y PR +L DL+
Sbjct: 55 GVETYTPRLLLYDLK 69
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 32.7 bits (75), Expect = 0.27
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 96 GAGNNWAKGHYTEGAELVDAVLDVVRKEAESCD-CLQGFQLTHSLGGGTGSGMGTLMISK 154
GAG N G + + D +RK E D +T +GGGTG+G +++K
Sbjct: 76 GAGGNPEIG-----RKAAEESRDEIRKLLEGADMVF----ITAGMGGGTGTG-AAPVVAK 125
Query: 155 IREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRT 214
I +E + T ++V P + + A + +L + D I N+ L E+
Sbjct: 126 IAKEL--GAL-TVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPNL 182
Query: 215 LKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMS---------MKEVDEQMLNI 258
+ + ++ A+ G++ + PG ++ M M+ I
Sbjct: 183 --PLNDAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVAMMGI 233
>gnl|CDD|193426 pfam12953, DUF3842, Domain of unknown function (DUF3842). This
short protein is found mainly in firmicute bacteria. It
is functionally uncharacterized.
Length = 131
Score = 30.9 bits (71), Expect = 0.40
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 142 GTGSGMGTLMISKIREEYPDRI 163
G G G+G +I K+R+E P+RI
Sbjct: 7 GQGGGIGKQIIEKLRKELPERI 28
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor.
This domain inhibits pectin methylesterases (PMEs) and
invertases through formation of a non-covalent 1:1
complex. It has been implicated in the regulation of
fruit development, carbohydrate metabolism and cell wall
extension. It may also be involved in inhibiting
microbial pathogen PMEs. It has been observed that it is
often expressed as a large inactive preprotein. It is
also found at the N-termini of PMEs predicted from DNA
sequences (personal obs:C Yeats), suggesting that both
PMEs and their inhibitor are expressed as a single
polyprotein and subsequently processed. It has two
disulphide bridges and is mainly alpha-helical.
Length = 145
Score = 27.9 bits (62), Expect = 4.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 217 LTTPTYGDLNHLVSAAMSGVTTCL 240
L + Y D +SAA++ TC
Sbjct: 91 LKSGDYDDARTWLSAALTNQDTCE 114
>gnl|CDD|216659 pfam01715, IPPT, IPP transferase. This is a family of IPP
transferases EC:2.5.1.8 also known as tRNA
delta(2)-isopentenylpyrophosphate transferase. These
enzymes modify both cytoplasmic and mitochondrial tRNAs
at A(37) to give isopentenyl A(37).
Length = 253
Score = 28.4 bits (64), Expect = 5.2
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 283 PRGLKMAATFIGNTTAIQELFRRISDQFDSMYKR------KAFLHWYLGEG 327
L IG + L RI+ + D M + KA L E
Sbjct: 147 KNALPYDIVQIGLARDREVLHERIARRVDDMLESGLVEEVKALYAQGLNED 197
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 28.6 bits (64), Expect = 5.5
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 320 LHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNEEGDGDA 371
++W+LGE +DE + + D Y A+ D D NEE D
Sbjct: 272 VYWFLGEAIDEDSDYSSDEDDDD-YDSYDSSDSASSDSNSDVDTNEEDDRGE 322
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor.
This domain inhibits pectin methylesterases (PMEs) and
invertases through formation of a non-covalent 1:1
complex. It has been implicated in the regulation of
fruit development, carbohydrate metabolism and cell wall
extension. It may also be involved in inhibiting
microbial pathogen PMEs. It has been observed that it is
often expressed as a large inactive preprotein. It is
also found at the N-termini of PMEs predicted from DNA
sequences, suggesting that both PMEs and their
inhibitors are expressed as a single polyprotein and
subsequently processed. It has two disulphide bridges
and is mainly alpha-helical.
Length = 148
Score = 27.7 bits (62), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 217 LTTPTYGDLNHLVSAAMSGVTTCL 240
L + Y D+ +SAA++ TCL
Sbjct: 94 LKSGDYDDVATWLSAALTDQDTCL 117
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 28.4 bits (63), Expect = 7.6
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 17/85 (20%)
Query: 280 DIPPRG---LKMAATFIG-NTTAIQ---ELFR--RISDQFDSMYKRK--AFLHWYLGEGM 328
D+P L A FIG N++AI ELF R +F++M ++ F H+ LG G+
Sbjct: 1786 DVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGL 1845
Query: 329 DEMEFTEAASNVLDLISEYQQYQEA 353
++ ++A ++V Y Q+ E
Sbjct: 1846 IDLALSQAVTDV------YAQFGEE 1864
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,068,608
Number of extensions: 1832663
Number of successful extensions: 1756
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1702
Number of HSP's successfully gapped: 59
Length of query: 371
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 273
Effective length of database: 6,590,910
Effective search space: 1799318430
Effective search space used: 1799318430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)