RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12090
(371 letters)
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 466 bits (1202), Expect = e-164
Identities = 97/248 (39%), Positives = 159/248 (64%), Gaps = 4/248 (1%)
Query: 2 REICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVP 61
REI LQ GQCGNQIG +FW+ + EHGI P + +R +V++ +A Y+P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAVLDV 119
RA+L+DLEP + ++ + P+ +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSP-KVSDT 178
+ +EA+ D L+GF L HS+ GGTGSG+G+ ++ ++ + YP +++ T+S+ P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VV+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGRM 246
LR+PG M
Sbjct: 242 TLRYPGYM 249
Score = 197 bits (504), Expect = 3e-59
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP---RGLKMAATFI 293
G + +V + + I+ + + F+ W P + + A+ P +++ +
Sbjct: 319 AILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMM 378
Query: 294 GNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA 353
N T+I LF R Q+D + KR+AFL + E M + F E ++ + +Y A
Sbjct: 379 ANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAA 438
Query: 354 AVDDEGGEDDNEEGDGDA 371
D E+ D D
Sbjct: 439 TRPDYISWGTQEQVDVDG 456
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 464 bits (1196), Expect = e-164
Identities = 103/247 (41%), Positives = 158/247 (63%), Gaps = 2/247 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAY-HGDSDLQLERINVYYNEASGSKY 59
+REI + GQCGNQI FW + EHG+ G G + + V++++ KY
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 60 VPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDV 119
VPRA+LVDLEPG + + G Q+F + V GA NNWA+G+ EG +++D +++V
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 179
+ E LQGF +THS+GGG+GSG+G+L++ ++R+ YP + + TFS+VPSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 239
VEPYNA L++ ++++N D +DNEAL+ I L +P Y DLN++++ +S VT
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTAS 239
Query: 240 LRFPGRM 246
LRFPG++
Sbjct: 240 LRFPGKL 246
Score = 181 bits (461), Expect = 2e-53
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIP--NNCKTAVCDIPPRGLKMAATFIG 294
F G + K+VDE M I + + + ++P K + P G + +
Sbjct: 312 AASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETAPEGFASSGLALV 369
Query: 295 NTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
N T I +F R+ QFD M+ A+ HWY G+ +A + + L Y+
Sbjct: 370 NHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYRD 424
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 462 bits (1191), Expect = e-163
Identities = 227/246 (92%), Positives = 243/246 (98%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIMNTFS++PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGRM 246
RFPG++
Sbjct: 241 RFPGQL 246
Score = 223 bits (569), Expect = 3e-69
Identities = 99/132 (75%), Positives = 115/132 (87%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNT 296
T F GRMSMKEVDEQMLNIQNKN+SYFVEWIPNN KTAVCDIPPRGLKM++TFIGN+
Sbjct: 312 TVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNS 371
Query: 297 TAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVD 356
TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+A D
Sbjct: 372 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431
Query: 357 DEGGEDDNEEGD 368
++G ++ E D
Sbjct: 432 EQGEFEEEEGED 443
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 459 bits (1183), Expect = e-161
Identities = 111/249 (44%), Positives = 158/249 (63%), Gaps = 2/249 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + HS GGGTGSG +L++ ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 239 CLRFPGRMS 247
LRF G ++
Sbjct: 241 SLRFDGALN 249
Score = 198 bits (504), Expect = 1e-59
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKM 288
CL + G + K+V+ + I+ K + FV+W P K + PP ++
Sbjct: 314 ACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQR 373
Query: 289 AATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQ 348
A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYE 433
Query: 349 QYQEAAVDDEGGEDDNE 365
+ +V+ EG E+ E
Sbjct: 434 EVGVDSVEGEGEEEGEE 450
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 457 bits (1177), Expect = e-160
Identities = 91/262 (34%), Positives = 148/262 (56%), Gaps = 7/262 (2%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGS 57
+ + GQ GNQI A FW+ + EHGIDP + +++ E+S
Sbjct: 3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62
Query: 58 KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVL 117
YVPRAI+VDLEP +D V++ G +F P N + GAG N+A G+ G E++ V+
Sbjct: 63 SYVPRAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 121
Query: 118 DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSD 177
+ E + CD + G + H++GGGTGSG G L+I ++E+Y + + + +++PSP+VS
Sbjct: 122 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 181
Query: 178 TVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVT 237
V EPYN +++ L + D DNEAL+++ R + +PT DLN L++ A++G+T
Sbjct: 182 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 241
Query: 238 TCLRFPGRMSMKEVDEQMLNIQ 259
+RF G ++ V+ + +
Sbjct: 242 ASMRFSGFLT---VEISLRELL 260
Score = 205 bits (524), Expect = 3e-62
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNT 296
+T + + G M K + + L + WIP K + P + + + N
Sbjct: 318 STAVLYRGIMEDKPLADAALAAM-REKLPLTYWIPTAFKIGYVEQPGISHRKSMVLLANN 376
Query: 297 TAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVD 356
T I + RI FD +++RKAF +WYL EGM E + ++ +L+ YQ +E+
Sbjct: 377 TEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEESGAK 436
Query: 357 DEGGEDDNEEGDGDA 371
+ + + G A
Sbjct: 437 AKVQDSAGDTGMRAA 451
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 3e-10
Identities = 65/395 (16%), Positives = 117/395 (29%), Gaps = 135/395 (34%)
Query: 13 GNQIGAKF------------WEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG-SKY 59
++ KF I E P+ + + +E+ + YN+ +KY
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSM----MTRMYIEQRDRLYNDNQVFAKY 129
Query: 60 -VPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVF--GQSGAGNNWAKGHYTEGAELVDAV 116
V R L+P +R RP V G G+G W +
Sbjct: 130 NVSR-----LQP--YLKLRQAL--LELRPAKNVLIDGVLGSGKTW----------VA--- 167
Query: 117 LDVVRKEAESCDCLQGFQ---LTHSLGGGTGSGMGTLMISKIREEYPDRIM---NTFSIV 170
LDV + C F+ L + P+ ++
Sbjct: 168 LDVCL--SYKVQCKMDFKIFWLN----------LK-------NCNSPETVLEMLQKLLYQ 208
Query: 171 PSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEIC---------------F--- 212
P + N L IH + YE C F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 213 -RTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIP 271
+ L LTT V+ +S TT +S+ + + K S ++++
Sbjct: 266 CKIL-LTT---RFKQ--VTDFLSAATTT-----HISLDHHSMTLTPDEVK--SLLLKYL- 311
Query: 272 NNCKTA-----VCDIPPRGLKMAATFIGNTTAIQELFRRI-SDQFDSMYKRKAFLHWYLG 325
+C+ V PR L + A I + A + ++ + D+ ++ ++ L
Sbjct: 312 -DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSL----- 363
Query: 326 EGMDEMEFTEAASNVLDLISEYQQ-YQEAAV--DD 357
NVL+ +EY++ + +V
Sbjct: 364 -------------NVLE-PAEYRKMFDRLSVFPPS 384
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 49.3 bits (117), Expect = 9e-07
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 18/173 (10%)
Query: 93 GQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMI 152
G G K ++ + ++ SCD ++ GG GSG+ ++
Sbjct: 56 YAEGCGKERKKA-VGYAQTYYKQIIAQIMEKFSSCD---IVIFVATMAGGAGSGITPPIL 111
Query: 153 SKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDET-----FCIDNEAL 207
++ YP++ ++P ++ + E NA + ++ +T+E + +DN
Sbjct: 112 GLAKQMYPNKHFGFVGVLPKA--TEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKR 169
Query: 208 YEICFRTLKLTTPTYGDLNHLVSAAMSGVT------TCLRFPGRMSMKEVDEQ 254
E K + D ++ + GV L + E D++
Sbjct: 170 -EKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLLTMKKSNVILEFDDK 221
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 42.4 bits (99), Expect = 2e-04
Identities = 35/163 (21%), Positives = 56/163 (34%), Gaps = 15/163 (9%)
Query: 96 GAGNNWAKGHYTEGAEL-VDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISK 154
GA N G E + + V++E E D + + +T LGGGTG+G I
Sbjct: 82 GAARNPQVGE--EAFVKHETKIFEAVKQEFEDRDFI--W-ITCGLGGGTGTGALLKAIEM 136
Query: 155 IREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFC---IDNEALYEIC 211
+ E N ++ P+ ++ + NAT I + N + IDN LY
Sbjct: 137 LYEHD----YNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKF 192
Query: 212 FRTLKLTTPT--YGDLNHLVSAAMSGVTTCLRFPGRMSMKEVD 252
N ++ A+ + S D
Sbjct: 193 EEENPSALANEYTSYSNKYIADALHEINLVTSSFTPFSDTHFD 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.010
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 40/133 (30%)
Query: 32 PTGA-YHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNF 90
P + +H S AS I DL + F +
Sbjct: 422 PVASPFH--SH--------LLVPAS------DLINKDLVKNNVS----------FNAKDI 455
Query: 91 ---VFGQSGAGNNWAKGHYTEGAELVDAVL-DVVRKEAESCDCLQGFQLTHSL--GGGTG 144
V+ + G++ + +VD ++ V+ E F+ TH L G G
Sbjct: 456 QIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWET-----TTQFKATHILDFGPGGA 509
Query: 145 SGMGTLMISKIRE 157
SG+G L + ++
Sbjct: 510 SGLGVLT-HRNKD 521
Score = 28.5 bits (63), Expect = 4.2
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 316 RKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNE 365
++ F L E + + + +L+ ++ Y + V+ ++
Sbjct: 34 QEQFNKI-LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 33.7 bits (76), Expect = 0.100
Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 27/200 (13%)
Query: 10 GQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLE 69
GQ GN+ F +G + +N ++ + + + +
Sbjct: 51 GQKGNKEADLFAGY----------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHF- 99
Query: 70 PGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDC 129
G A R +L + E
Sbjct: 100 DGLKGAAR-----------TPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIV 148
Query: 130 LQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSI 189
F + GGG G+G G+L++ IRE++ ++ +PS + NA + +
Sbjct: 149 -DQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI----NNALVLL 203
Query: 190 HQLVENTDETFCIDNEALYE 209
++ E E + + +
Sbjct: 204 SEIDEFMREQDRLFGNSDIK 223
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 31.7 bits (72), Expect = 0.29
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 295 NTTAIQELFRRISDQFDSMYKR-KAFLHWYLGEGMDEMEFTEAASNVLDL 343
+ + I+ F +S ++D ++ + G + ++LDL
Sbjct: 2 SLSEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDL 51
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Length = 33
Score = 28.2 bits (62), Expect = 0.41
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 300 QELFRRISDQFDSMYKRKAFLHWY 323
QEL RRI D+F+ Y R+ F + Y
Sbjct: 10 QEL-RRIGDEFNETYTRRVFANDY 32
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four
helix bundle, hydrolase/hydrolase inhibitor complex;
1.90A {Actinidia chinensis}
Length = 153
Score = 30.0 bits (67), Expect = 0.73
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 217 LTTPTYGDLNHLVSAAMSGVTTCLR-FPGRMSMK-EVDEQMLNIQN--KNASYFVEWIPN 272
LT+ Y LN SAA G TC F G ++ ++ + L +++ +P
Sbjct: 93 LTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLPG 152
Query: 273 N 273
+
Sbjct: 153 S 153
>1x91_A Invertase/pectin methylesterase inhibitor family protein;
four-helix bundle, alpha hairpin, disulfide bridge,
domain- swapping, linker; 1.50A {Arabidopsis thaliana}
SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Length = 153
Score = 29.6 bits (66), Expect = 0.90
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 217 LTTPTYGDLNHLVSAAMSGVTTCL-----RFPGRMSMKEVDEQMLNIQNKNASYFVEWIP 271
L + +N VSAA+ G TCL S+ + + N+ A +P
Sbjct: 93 LASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCG-IALVISNMLP 151
Query: 272 NN 273
N
Sbjct: 152 RN 153
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 29.9 bits (66), Expect = 1.4
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 93 GQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMI 152
G GAG N + V + ++ + + +SLGGG+GS +G L+
Sbjct: 52 GTRGAGGNRKVI--------LPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLIT 103
Query: 153 SKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFC-IDNE 205
++ + + + S ++ TL + ++ + N
Sbjct: 104 GQLADRKASFVSFVVGAMESTDNLGNDIDTMK-TLEAIAVNKHLPIVVNYVPNT 156
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 3.3
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 112 LVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVP 171
+ + + + + + G +GSGMG + S +R + DR
Sbjct: 1024 FIASGITDPYEMYKYVHVSEV-------GNCSGSGMGGV--SALRGMFKDRFK------D 1068
Query: 172 SPKVSDTVVEPYNATLSIHQL 192
P +D + E + T+S
Sbjct: 1069 EPVQNDILQESFINTMSAWVN 1089
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 28.6 bits (63), Expect = 4.5
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 55 SGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPD-NFVFGQSGAGNNWAKGHYTEGA 110
+ V+ + + GP I D V G++ K Y G
Sbjct: 128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK-GYRGGT 183
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 28.2 bits (62), Expect = 5.4
Identities = 16/144 (11%), Positives = 38/144 (26%), Gaps = 26/144 (18%)
Query: 226 NHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIP-------------- 271
+ S + + L G + + + Q +
Sbjct: 484 DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543
Query: 272 NNCKTAVCDIPPRGLKMAATF--------IGNTTAIQELFRRISDQFDSMYKRKAFLHWY 323
++ T + L+ F GN +A++ L + +R A
Sbjct: 544 DDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAV---- 599
Query: 324 LGEGMDEMEFTEAASNVLDLISEY 347
+ G + ++ L+S+
Sbjct: 600 IALGFVLLRDYTTVPRIVQLLSKS 623
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical
hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB:
2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Length = 150
Score = 26.5 bits (58), Expect = 8.6
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 217 LTTPTYGDLNHLVSAAMSGVTTCLR-FPGRMS-MKEVDEQMLNI 258
LT + + C F G S ++ + +
Sbjct: 95 LTKGDPKFAEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHEL 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,902,422
Number of extensions: 359380
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 31
Length of query: 371
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,049,298
Effective search space: 1117606248
Effective search space used: 1117606248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)