RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12090
(371 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 390 bits (1004), Expect = e-138
Identities = 228/243 (93%), Positives = 241/243 (99%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYV 60
MREI H+QAGQCGNQIGAKFWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV 120
PRAILVDLEPGTMD+VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 180
RKE+ESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIMNTFS+VPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 240
EPYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFP 243
RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 360 bits (926), Expect = e-126
Identities = 109/244 (44%), Positives = 154/244 (63%), Gaps = 2/244 (0%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSK 58
MRE + GQ G QIG WE+ EHGI P G D + + N +++E K
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 59 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLD 118
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 119 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDT 178
+RK A+ C LQGF + HS GGGTGSG +L++ ++ +Y + FSI P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 179 VVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTT 238
VVEPYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 239 CLRF 242
LRF
Sbjct: 241 SLRF 244
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 339 bits (870), Expect = e-118
Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 4/245 (1%)
Query: 1 MREICHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGS 57
+ + GQ GNQI A FW+ + EHGIDP + +++ E+S
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 58 KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVL 117
YVPRAI+VDLEP +D V++ G +F P N + GAG N+A G+ G E++ V+
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 118 DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSD 177
+ E + CD + G + H++GGGTGSG G L+I ++E+Y + + + +++PSP+VS
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 179
Query: 178 TVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVT 237
V EPYN +++ L + D DNEAL+++ R + +PT DLN L++ A++G+T
Sbjct: 180 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 239
Query: 238 TCLRF 242
+RF
Sbjct: 240 ASMRF 244
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 168 bits (428), Expect = 6e-52
Identities = 94/116 (81%), Positives = 106/116 (91%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNT 296
T F GRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM+ATFIGN+
Sbjct: 69 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS 128
Query: 297 TAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQE 352
TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQQYQ+
Sbjct: 129 TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 184
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 157 bits (399), Expect = 2e-47
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 236 VTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL--------K 287
+ CL + G + K+V+ + I+ K FV+W P K + PP + +
Sbjct: 68 MACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQ 127
Query: 288 MAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEY 347
A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++ L +Y
Sbjct: 128 RAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 187
Query: 348 QQYQEAAV 355
++ +V
Sbjct: 188 EEVGVDSV 195
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 150 bits (381), Expect = 5e-45
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 237 TTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNT 296
+T + + G M K + + L + WIP K + P + + + N
Sbjct: 66 STAVLYRGIMEDKPLADAALAAMREK-LPLTYWIPTAFKIGYVEQPGISHRKSMVLLANN 124
Query: 297 TAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQE 352
T I + RI FD +++RKAF +WYL EGM E + ++ +L+ YQ +E
Sbjct: 125 TEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEE 180
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 42.6 bits (100), Expect = 2e-05
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 123 EAESCDCLQGFQLTH---SLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 179
+ L+G + +GGGTG+G ++ +E + T ++V P +
Sbjct: 76 RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMG----ILTVAVVTRPFPFEGR 131
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 239
A I L E+ D I NE L I + L + + +++ A+ G++
Sbjct: 132 KRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGISDI 190
Query: 240 LRFPG 244
++ PG
Sbjct: 191 IKRPG 195
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 41.5 bits (97), Expect = 5e-05
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 123 EAESCDCLQGFQLTH---SLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 179
E + + LQ + GGGTG+G ++ +E + +IV +P +
Sbjct: 75 EEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTV----AIVTTPFYFEGP 130
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 239
A + +L ++ D I N L E R +K+ + + + + G++
Sbjct: 131 ERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGISEL 189
Query: 240 LRFPG 244
+ G
Sbjct: 190 ITKRG 194
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 39.2 bits (91), Expect = 3e-04
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 102 AKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPD 161
A G+ G E + ++ + D +T LGGGTG+G ++ ++
Sbjct: 75 AGGNPKIGEEAAKESAEEIKAAIQDSDM---VFITCGLGGGTGTGSAPVVAEISKKIG-- 129
Query: 162 RIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEI 210
T ++V P V + V NA + +L ++TD I NE L+EI
Sbjct: 130 --ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEI 176
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 38.3 bits (89), Expect = 6e-04
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
Query: 123 EAESCDCLQGFQLTH---SLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 179
+ E + L+G + GGGTG+G ++ S R+ T +V P +
Sbjct: 76 KDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLG----ALTVGVVTRPFSFEGK 131
Query: 180 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 239
A I L E+ D I N+ L ++ + L + + ++ + G+T
Sbjct: 132 RRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGITDL 190
Query: 240 LRFPG 244
+ PG
Sbjct: 191 ITTPG 195
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 29.6 bits (66), Expect = 0.33
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 201 CIDN--EALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGRMSMKEVDEQMLNI 258
C+D A+ + L + +N VSAA+ G TCL ++ VD ++N
Sbjct: 71 CVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLD--DVKRLRSVDSSVVNN 128
Query: 259 QNK------NASYFVEWIPNN 273
A +P N
Sbjct: 129 SKTIKNLCGIALVISNMLPRN 149
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 147
Score = 27.4 bits (60), Expect = 1.7
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 217 LTTPTYGDLNHLVSAAMSGVTTCLR-FPGRMS-MKEVDEQMLNI 258
LT + + C F G S ++ + +
Sbjct: 92 LTKGDPKFAEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHEL 135
>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
[TaxId: 5061]}
Length = 261
Score = 26.7 bits (58), Expect = 4.8
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTG 144
+ F G+Y + D V +V+++A HSLG
Sbjct: 80 YTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGA--- 136
Query: 145 SGMGTLMISKIREEYPDRIMNTFSIVP 171
M L +++ Y + + TF
Sbjct: 137 -SMAALTAAQLSATYDNVRLYTFGEPR 162
>d2vhla2 c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Bacillus subtilis
[TaxId: 1423]}
Length = 301
Score = 25.6 bits (54), Expect = 9.8
Identities = 11/125 (8%), Positives = 30/125 (24%)
Query: 230 SAAMSGVTTCLRFPGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMA 289
G T+ L + + ++N + A+ + + P K A
Sbjct: 29 RLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRA 88
Query: 290 ATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ 349
++ Q ++ K + E+ +++ +
Sbjct: 89 GAQPKEWIRPSDVELFKKWQQEAGGLIKIVTLAPEEDQHFELIRHLKDESIIASMGHTDA 148
Query: 350 YQEAA 354
Sbjct: 149 DSALL 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.407
Gapped
Lambda K H
0.267 0.0366 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,424,818
Number of extensions: 65658
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 18
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.6 bits)