BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12093
         (118 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
          Length = 403

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 16/68 (23%)

Query: 19  TSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFL----SDSDVICTSHYSKL 74
           ++ F H  Q      WQ+FA S  +C  ++G       P  L     D DVICT+ YS++
Sbjct: 141 STDFGHTYQ-----PWQFFASSKRDCLERFG-------PRTLERITQDDDVICTTEYSRI 188

Query: 75  KPLEGGEL 82
            PLE GE+
Sbjct: 189 VPLENGEI 196


>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
          Length = 525

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 34  WQYFAVSDDECWTQY-GILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
           ++YFA    +C + + GI   P   +     D+IC S YS ++P   GE+
Sbjct: 146 YRYFAY---DCESSFPGISTGPMKKV----DDIICDSRYSDIEPSTEGEV 188


>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
           Gtf180(D1025n)-Sucrose Complex
          Length = 1039

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 47  QYGILASPANPLFLSDSDVICTSHYSKL 74
           QYG L   + P F +D+D    +HYS+L
Sbjct: 128 QYGNLLPASLPSFSTDADSAELNHYSEL 155


>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
           Truncated Glucansucrase Gtf180-Maltose Complex
          Length = 1039

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 47  QYGILASPANPLFLSDSDVICTSHYSKL 74
           QYG L   + P F +D+D    +HYS+L
Sbjct: 128 QYGNLLPASLPSFSTDADSAELNHYSEL 155


>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
           Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
          Length = 1039

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 47  QYGILASPANPLFLSDSDVICTSHYSKL 74
           QYG L   + P F +D+D    +HYS+L
Sbjct: 128 QYGNLLPASLPSFSTDADSAELNHYSEL 155


>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
           Phosphate Bound
 pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
           Phosphate Bound
 pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
           Magnesium In M3
 pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
           Magnesium In M3
          Length = 478

 Score = 25.4 bits (54), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 90  YLHRDTNVGKLSSYTWNQTDLISVGI 115
           +L    + G  +SY WN+ DL++V I
Sbjct: 233 WLDDKASQGATASYVWNRDDLLAVDI 258


>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
 pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
          Length = 476

 Score = 25.4 bits (54), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 90  YLHRDTNVGKLSSYTWNQTDLISVGI 115
           +L    + G  +SY WN+ DL++V I
Sbjct: 233 WLDDKASQGATASYVWNRDDLLAVDI 258


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,008,487
Number of Sequences: 62578
Number of extensions: 158296
Number of successful extensions: 232
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)