BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12093
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
Length = 3084
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
WQY+AVSD EC T+Y I P + +D++VICTS+YSKL PLE GE+
Sbjct: 156 WQYYAVSDTECLTRYKITPRRGPPTYRADNEVICTSYYSKLVPLEHGEI 204
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
Length = 3075
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
WQY+AVSD EC ++Y I P + +D +VICTS+YS+L PLE GE+
Sbjct: 149 WQYYAVSDSECLSRYNITPRRGPPTYRADDEVICTSYYSRLVPLEHGEI 197
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4
Length = 3122
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
WQY AV+D EC T Y I P + D +VICTS YSK+ PLE GE+
Sbjct: 166 WQYHAVTDTECLTLYNIYPRTGPPSYAKDDEVICTSFYSKIHPLENGEI 214
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
WQY AV+D EC T Y I P + D +VICTS YSK+ PLE GE+
Sbjct: 162 WQYHAVTDTECLTLYNIYPRTGPPSYAKDDEVICTSFYSKIHPLENGEI 210
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2
Length = 3333
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
WQYFA S +C ++G AN D DV+C + YS++ PLE GE+
Sbjct: 184 WQYFAHSKVDCLKEFG---REANMAVTRDDDVLCVTEYSRIVPLENGEV 229
>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3
Length = 3333
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
WQYFA S +C Q+G AN D ++C + YS++ PLE GE+
Sbjct: 181 WQYFAHSRRDCVEQFG---QEANMAITQDDQMLCVTEYSRIVPLENGEI 226
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 16/68 (23%)
Query: 19 TSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFL----SDSDVICTSHYSKL 74
++ F H Q WQ+FA S +C ++G P L D DVICT+ YS++
Sbjct: 180 STDFGHTYQ-----PWQFFASSKRDCLERFG-------PRTLERITQDDDVICTTEYSRI 227
Query: 75 KPLEGGEL 82
PLE GE+
Sbjct: 228 VPLENGEI 235
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
WQ+F+ + +C T +G P+ D DVICT+ YSK+ PLE GE+
Sbjct: 158 WQHFSDTPADCETYFG--KDTYKPI-TRDDDVICTTEYSKIVPLENGEI 203
>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8
Length = 3695
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 11/53 (20%)
Query: 34 WQYFAVSDDECWTQYGILASPANPLFLS----DSDVICTSHYSKLKPLEGGEL 82
WQ+FA S +C ++G P L D ICT+ YS++ PLE GE+
Sbjct: 185 WQFFASSKRDCLERFG-------PQTLERITRDDAAICTTEYSRIVPLENGEI 230
>sp|Q9WX71|BCSC4_GLUXY Cellulose synthase 2 operon protein C OS=Gluconacetobacter xylinus
GN=bcsCII PE=3 SV=1
Length = 1307
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 4 TYVGNKDPGTTEVF--VTSRFSHGIQHWVINSWQYFA 38
+Y G +DPGT +++ VT F HG W W +A
Sbjct: 1094 SYAGERDPGTGKLWGGVTRLFGHGALEWSARGWNAYA 1130
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1
SV=4
Length = 1788
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 16 VFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFLSD-SDVICTSHYSKL 74
+++ F G Q W I ++YFA E + P P L + +DV+CTS YS +
Sbjct: 166 MYIERSFDFG-QTWHI--YRYFAYDCKESF--------PGVPTVLENITDVMCTSRYSNV 214
Query: 75 KPLEGGEL 82
+P GE+
Sbjct: 215 EPSRNGEV 222
>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis elegans GN=lam-2 PE=1
SV=3
Length = 1633
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 15 EVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKL 74
E F + +H W WQ+++ S C YG L+ A L +++ CT +S +
Sbjct: 160 ESFTIYKKTHTDSEW--EPWQFYSGS---CRATYG-LSDRAPILPGNEATAQCTKEFSDI 213
Query: 75 KPLEGGEL 82
P+ GG +
Sbjct: 214 SPITGGNI 221
>sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1
Length = 1761
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 32 NSWQYFAVSDDECWTQY-GILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
++W+ F +C T + I + A + D++C S YS ++P GGE+
Sbjct: 151 HNWKVFKYFAKDCATSFPNITSGQAQGV----GDIVCDSKYSDIEPSTGGEV 198
>sp|Q8JHV6|LAMB4_DANRE Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1
Length = 1827
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 33 SWQYFAVSDDECWTQY-GILASPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
+W+ F ++C + GI PA+ S D++C S YS +P GE+
Sbjct: 154 TWKVFRYFAEDCANSFPGISEGPAH----SIDDLVCDSRYSGAEPSTEGEV 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,438,591
Number of Sequences: 539616
Number of extensions: 1878887
Number of successful extensions: 3449
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3434
Number of HSP's gapped (non-prelim): 15
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)