Query psy12093
Match_columns 118
No_of_seqs 103 out of 339
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:34:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00136 LamNT Laminin N-ter 100.0 2E-31 4.4E-36 210.9 8.5 103 5-115 104-214 (238)
2 PF00055 Laminin_N: Laminin N- 100.0 5.5E-31 1.2E-35 208.0 5.2 103 5-114 102-212 (237)
3 KOG3512|consensus 99.9 1.9E-24 4.2E-29 185.0 6.8 97 7-110 144-242 (592)
4 KOG0994|consensus 99.9 1.1E-22 2.4E-27 186.3 8.1 100 6-115 138-245 (1758)
5 KOG1836|consensus 99.8 3.4E-19 7.4E-24 169.2 3.8 89 11-104 145-235 (1705)
6 PF02012 BNR: BNR/Asp-box repe 92.5 0.076 1.6E-06 24.4 1.1 11 21-33 2-12 (12)
7 PRK15244 virulence protein Spv 38.7 34 0.00075 31.1 3.3 36 9-46 183-218 (591)
8 PF13088 BNR_2: BNR repeat-lik 30.3 76 0.0016 24.0 3.6 36 3-40 5-41 (275)
9 PF06219 DUF1005: Protein of u 28.9 36 0.00077 30.1 1.7 65 13-86 281-349 (460)
10 cd00260 Sialidase Sialidases o 27.5 57 0.0012 25.9 2.6 32 7-40 38-69 (351)
11 PF14921 APCDDC: Adenomatosis 27.1 50 0.0011 26.7 2.2 33 12-46 34-67 (240)
12 KOG0632|consensus 25.3 19 0.00041 30.7 -0.5 25 22-48 68-93 (388)
13 PF05895 DUF859: Siphovirus pr 24.6 48 0.001 30.3 1.8 25 13-40 535-559 (624)
No 1
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=99.97 E-value=2e-31 Score=210.86 Aligned_cols=103 Identities=25% Similarity=0.393 Sum_probs=88.5
Q ss_pred eeccCCCCCcceEEEeecCCCCCCceeeeeeeccCCccchHhhhCCCCCCCCCCCCCCCceEEecCCCCCccCCCCeEEE
Q psy12093 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGELTK 84 (118)
Q Consensus 5 ~~~~~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s~~dC~~~FG~~~~~~~~~~~~ddeViCTs~YS~i~Pl~~GeV~f 84 (118)
.++|++|++ ++|||||| |+ |+||+|||||| +||.+.||+++...... .++++|+||++||++.|++||||+|
T Consensus 104 ~l~F~s~RP-a~~i~erS-d~--G~tW~p~qyfa---~dC~~~f~~~~~~~~~~-~n~~~v~Ct~~ys~~~P~~~g~V~f 175 (238)
T smart00136 104 ILKFCSPRP-SLWILERS-DF--GKTWQPWQYFS---SDCRRTFGRPPRGPITK-GNEDEVICTSEYSDIVPLEGGEIAF 175 (238)
T ss_pred EEEecCCCC-ceEEEeec-CC--CCCCcEeeeee---cchhhhcCCCCCCCCCC-CCCCccEECCCCCCCcCCCCCEEEE
Confidence 367896655 99999999 77 89999999999 58999999986443332 3799999999999999999999999
Q ss_pred EeeCCCCCCCC--CccccceeEE------eeeeeEEeee
Q psy12093 85 FKTKAYLHRDT--NVGKLSSYTW------NQTDLISVGI 115 (118)
Q Consensus 85 s~L~gRps~~d--~s~~Lqd~~~------~~~~~~~~~~ 115 (118)
++|+|||++.| +|++||||+= +|++|+++|-
T Consensus 176 s~l~~rps~~~~~~S~~LQd~vtaTdiRi~l~rl~t~g~ 214 (238)
T smart00136 176 SLLEGRPSATDFDNSPVLQEWVTATNIRVRLTRLRTLGD 214 (238)
T ss_pred EecCCCCCCcCCCCCHHHHhheeeeEEEEEEEccCcCCc
Confidence 99999999996 7999999973 5888888774
No 2
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=99.96 E-value=5.5e-31 Score=207.98 Aligned_cols=103 Identities=27% Similarity=0.483 Sum_probs=79.4
Q ss_pred eeccCCCCCcceEEEeecCCCCCCceeeeeeeccCCccchHhhhCCCCCCCCCCCCCCCceEEecCCCCCccCCCCeEEE
Q psy12093 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGELTK 84 (118)
Q Consensus 5 ~~~~~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s~~dC~~~FG~~~~~~~~~~~~ddeViCTs~YS~i~Pl~~GeV~f 84 (118)
-|+|++|+ |++||||||.|+ | +|+|||||| .||.+.||+++........++++|+||++||++.|++||||+|
T Consensus 102 ~l~F~spR-P~~miierS~D~--g-tW~p~qYfA---~~C~~~f~~~~~~~~~~~~~~~~v~Ct~~yS~~~P~~~g~V~f 174 (237)
T PF00055_consen 102 ILQFCSPR-PAAMIIERSSDF--G-TWQPWQYFA---SDCSRTFGMPPNGPPPKFANPDEVICTSRYSDIEPLTGGEVIF 174 (237)
T ss_dssp EEEESS----SEEEEEEESST--T-SEEEEEEEE---SSHHHHCS--BTTGGG-STSTT---EESTTTTSSSTSTTEEEE
T ss_pred EEEEcCCC-CCeEEEEEccCC--C-ceeEeHHhh---cCChhhcCCcccccccccCCCCcCeecCcCCCCcCccccceee
Confidence 36899765 699999999999 8 999999999 5799999998655444456789999999999999999999999
Q ss_pred EeeCCCCCCC--CCccccceeE------EeeeeeEEee
Q psy12093 85 FKTKAYLHRD--TNVGKLSSYT------WNQTDLISVG 114 (118)
Q Consensus 85 s~L~gRps~~--d~s~~Lqd~~------~~~~~~~~~~ 114 (118)
++|+|||++. |+|++||||+ .+|++|+++|
T Consensus 175 ~~l~grP~~~~~~~S~~Lq~~~~aT~lRi~l~~~~t~~ 212 (237)
T PF00055_consen 175 SLLEGRPSANDFDPSPELQDWVTATNLRIRLTRLHTLG 212 (237)
T ss_dssp ESHHCCCCCTTHHHSHHHHHHCEEEEEEEEEEE----T
T ss_pred eeccCCCCCCcCCCCHHHHhhhceeEEEEEEeeeccCC
Confidence 9999999999 5799999985 3477777776
No 3
>KOG3512|consensus
Probab=99.90 E-value=1.9e-24 Score=184.95 Aligned_cols=97 Identities=15% Similarity=0.268 Sum_probs=85.0
Q ss_pred ccCCCCCcceEEEeecCCCCCCceeeeeeeccCCccchHhhhCCCCCCCCCCCCCCCceEEecCCCCCccCCCCeEEEEe
Q psy12093 7 GNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGELTKFK 86 (118)
Q Consensus 7 ~~~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s~~dC~~~FG~~~~~~~~~~~~ddeViCTs~YS~i~Pl~~GeV~fs~ 86 (118)
.|- -+||++|+|+||.|+ |+||+|||||| ++|++.|||.+........+++||+||++||...+..+|.|+|++
T Consensus 144 ~Fc-S~rPdsmaL~KS~D~--GrTWqPfQFYs---s~C~~~fgr~~~~a~isk~n~~Ea~Ct~s~~~~~~~~~~~~af~~ 217 (592)
T KOG3512|consen 144 TFC-SGRPDSMALEKSLDY--GRTWQPFQFYS---SDCRKAFGRSPRRADISKSNEQEALCTESYSDGAGSGGGKIAFFE 217 (592)
T ss_pred EEe-cCCCceeeeeecccc--CCcccccchhH---HHHHHHhCCCCcccccccCCccceeeccccccCCCCCCceEEeee
Confidence 455 479999999999999 99999999999 689999999555556666789999999999999999999999999
Q ss_pred eCCCCCCC--CCccccceeEEeeeee
Q psy12093 87 TKAYLHRD--TNVGKLSSYTWNQTDL 110 (118)
Q Consensus 87 L~gRps~~--d~s~~Lqd~~~~~~~~ 110 (118)
|++||++. |+|++||||. -+|||
T Consensus 218 l~~Rps~~dldss~vLqDwv-TaTDi 242 (592)
T KOG3512|consen 218 LEDRPSAFDLDSSPVLQDWV-TATDI 242 (592)
T ss_pred ecCCccccccccchhhhhhe-eeeee
Confidence 99999999 5899999985 24554
No 4
>KOG0994|consensus
Probab=99.87 E-value=1.1e-22 Score=186.30 Aligned_cols=100 Identities=26% Similarity=0.362 Sum_probs=85.8
Q ss_pred eccCCCCCcceEEEeecCCCCCCceeeeeeeccCCccchHhhh-CCCCCCCCCCCCCCCceEEecCCCCCccCCCCeEEE
Q psy12093 6 VGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY-GILASPANPLFLSDSDVICTSHYSKLKPLEGGELTK 84 (118)
Q Consensus 6 ~~~~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s~~dC~~~F-G~~~~~~~~~~~~ddeViCTs~YS~i~Pl~~GeV~f 84 (118)
+-||.| ||++|+||||.|| |+||++|+||| .||..+| |++. ..+ ..-++||||++||++.|+++|||+|
T Consensus 138 mtFktf-RPAAMliERS~DF--GkTW~vYrYFA---yDC~asFPGv~~--~~~--kk~~DviCtSrYS~~~PstgGEVif 207 (1758)
T KOG0994|consen 138 MTFKTF-RPAAMLIERSSDF--GKTWHVYRYFA---YDCSATFPGVPT--GPP--KKWDDVICTSRYSDPEPSTGGEVIF 207 (1758)
T ss_pred EeeccC-Ccceeeeeecccc--cccceeeeeee---cccccCCCCCCC--CCc--ccccceeeecccCCCCCCCCCeEEE
Confidence 467877 7899999999999 99999999999 5899999 8873 323 5568999999999999999999999
Q ss_pred EeeCCCCCCCCC-cc------ccceeEEeeeeeEEeee
Q psy12093 85 FKTKAYLHRDTN-VG------KLSSYTWNQTDLISVGI 115 (118)
Q Consensus 85 s~L~gRps~~d~-s~------~Lqd~~~~~~~~~~~~~ 115 (118)
++|++.....|+ |+ ++.....|||+||+||-
T Consensus 208 rvl~P~~~iedPYs~~IQ~~LKITNLRvn~tklhtlgd 245 (1758)
T KOG0994|consen 208 RVLDPAIDIEDPYSAKIQELLKITNLRVNFTKLHTLGD 245 (1758)
T ss_pred EecCCCCCCCCchhHHHHHHhhhhheeeeeEeeccccc
Confidence 999999999874 43 34456688999999984
No 5
>KOG1836|consensus
Probab=99.75 E-value=3.4e-19 Score=169.16 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=79.7
Q ss_pred CCCcceEEEeecCCCCCCceeeeeeeccCCccchHhhhCCCCCCCCCCCCCCCceEEecCCCCCccCCCCeEEEEeeCCC
Q psy12093 11 PGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGELTKFKTKAY 90 (118)
Q Consensus 11 ~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s~~dC~~~FG~~~~~~~~~~~~ddeViCTs~YS~i~Pl~~GeV~fs~L~gR 90 (118)
-.||++|+|+|+.|. +++|.||||||.|+.+|++.+++.+ .....++++++||++||+|.||+||||+|++|+||
T Consensus 145 sprp~s~~l~k~~~~--~g~~~p~q~~s~s~~~~~~~~~~~~---l~~~~~d~~~~Ct~e~S~i~PL~ng~i~~s~l~gr 219 (1705)
T KOG1836|consen 145 SPRPESFGLYKSTDE--DGPWCPWQFCSGSCRDCLSRPDRQA---LRGGENDDAAICTTEFSDISPLENGEIAFSTLEGR 219 (1705)
T ss_pred CCCCccceeeccccc--CCCcCCceeecccCccccccCCccc---ccCCCCCccceeccccccCcccccchhhhhhhcCC
Confidence 368999999999998 8999999999999999999988753 22234889999999999999999999999999999
Q ss_pred CCCCC--CccccceeE
Q psy12093 91 LHRDT--NVGKLSSYT 104 (118)
Q Consensus 91 ps~~d--~s~~Lqd~~ 104 (118)
||+.+ .|+.||+|+
T Consensus 220 psa~~f~~S~~L~ef~ 235 (1705)
T KOG1836|consen 220 PSAYNFETSPELQEFT 235 (1705)
T ss_pred CcccccCCCHHHHhhh
Confidence 99996 699999997
No 6
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=92.51 E-value=0.076 Score=24.40 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=8.6
Q ss_pred ecCCCCCCceeee
Q psy12093 21 RFSHGIQHWVINS 33 (118)
Q Consensus 21 RS~d~~~G~tW~P 33 (118)
+|.|+ |+||++
T Consensus 2 ~S~D~--G~TW~~ 12 (12)
T PF02012_consen 2 YSTDG--GKTWKK 12 (12)
T ss_dssp EESST--TSS-EE
T ss_pred EeCCC--cccCcC
Confidence 68899 999985
No 7
>PRK15244 virulence protein SpvB; Provisional
Probab=38.69 E-value=34 Score=31.12 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=32.0
Q ss_pred CCCCCcceEEEeecCCCCCCceeeeeeeccCCccchHh
Q psy12093 9 KDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWT 46 (118)
Q Consensus 9 ~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s~~dC~~ 46 (118)
.+|++..+|++|++.|. ..+-.-|||-++++..|..
T Consensus 183 ~~~~rIa~WLLEesvD~--~Gn~I~Y~YkaED~~g~d~ 218 (591)
T PRK15244 183 QAASHTAQWLVEESVTP--AGEHIYYSYLAENGDNVDL 218 (591)
T ss_pred CCCCceeEEEEEEEECC--CCCEEEEEEecCcccCCCh
Confidence 34789999999999999 8999999999998888866
No 8
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=30.35 E-value=76 Score=24.04 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=21.8
Q ss_pred eeeeccCCCCCcceE-EEeecCCCCCCceeeeeeeccCC
Q psy12093 3 CTYVGNKDPGTTEVF-VTSRFSHGIQHWVINSWQYFAVS 40 (118)
Q Consensus 3 ~~~~~~~~~~~~e~~-i~eRS~d~~~G~tW~PwQYFA~s 40 (118)
|.+-+..+-+...++ ...||.|+ |+||.+=+--+..
T Consensus 5 a~~~~~~~~~~~d~~i~~S~s~D~--G~tWs~~~~v~~~ 41 (275)
T PF13088_consen 5 AVWEGGSDEGAIDIVIRRSRSTDG--GKTWSEPRIVADG 41 (275)
T ss_dssp EEEEESSCSCCEEEEEEEECCCCC--TTEEEEEEEEETS
T ss_pred EEEECCcccCCCCEEEEEEEeeCC--CCeeCCCEEEeec
Confidence 344444445544433 33344999 9999998876643
No 9
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=28.87 E-value=36 Score=30.07 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=37.7
Q ss_pred CcceEEEeecCCCCCCceeeeeeeccCCccchHhhhCCCCCCCC-CC-C--CCCCceEEecCCCCCccCCCCeEEEEe
Q psy12093 13 TTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPAN-PL-F--LSDSDVICTSHYSKLKPLEGGELTKFK 86 (118)
Q Consensus 13 ~~e~~i~eRS~d~~~G~tW~PwQYFA~s~~dC~~~FG~~~~~~~-~~-~--~~ddeViCTs~YS~i~Pl~~GeV~fs~ 86 (118)
.|.+|+|=|.+-. .+|+||---- |+|.=|..+.-.- .. + ......+..++ |.|.--.||+-.+-+
T Consensus 281 NPGAWLILRP~~~---gsWkPWGRLE-----AWRErg~~d~lgyrfeL~~~~~~~~~v~~ae-s~is~~kGG~F~ID~ 349 (460)
T PF06219_consen 281 NPGAWLILRPDGD---GSWKPWGRLE-----AWRERGGSDGLGYRFELLPDGGVGGGVLVAE-STISSKKGGEFSIDT 349 (460)
T ss_pred CCCeEEEEecCCC---CCcccchhhh-----hhhccCCCCcceeEEEEccCCCCCceEEEee-eeeccccCceeEEec
Confidence 4789988888666 4999997543 7777663210000 00 0 11234555555 556666777766655
No 10
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=27.48 E-value=57 Score=25.93 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=24.1
Q ss_pred ccCCCCCcceEEEeecCCCCCCceeeeeeeccCC
Q psy12093 7 GNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVS 40 (118)
Q Consensus 7 ~~~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s 40 (118)
+..|.+....+++.||.|+ |+||.+-+.-+..
T Consensus 38 ~~~D~~~~~~iv~~~S~D~--G~tW~~~~~i~~~ 69 (351)
T cd00260 38 GCSDRSNAIDIVARRSTDG--GKTWSPSTVISDG 69 (351)
T ss_pred CCCCCCcccceeEEEeccC--CCcccccEEehhc
Confidence 3445443455799999999 9999998888754
No 11
>PF14921 APCDDC: Adenomatosis polyposis coli down-regulated 1
Probab=27.10 E-value=50 Score=26.74 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=25.7
Q ss_pred CCcceEEEeecCCCCCCceeeeee-eccCCccchHh
Q psy12093 12 GTTEVFVTSRFSHGIQHWVINSWQ-YFAVSDDECWT 46 (118)
Q Consensus 12 ~~~e~~i~eRS~d~~~G~tW~PwQ-YFA~s~~dC~~ 46 (118)
.||+..++-|+--+-..++|+-+| ||+. ..|..
T Consensus 34 vRPGp~FLTR~ytF~~n~tw~~~~~~Y~D--p~C~~ 67 (240)
T PF14921_consen 34 VRPGPEFLTRSYTFYSNRTWEGYYHYYSD--PSCSQ 67 (240)
T ss_pred ccCCCEEEEEEEEEcCCCcEEEEEEEECC--CCCCC
Confidence 678888888887765679999999 5664 68965
No 12
>KOG0632|consensus
Probab=25.28 E-value=19 Score=30.66 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=21.1
Q ss_pred cCCCCCCceee-eeeeccCCccchHhhh
Q psy12093 22 FSHGIQHWVIN-SWQYFAVSDDECWTQY 48 (118)
Q Consensus 22 S~d~~~G~tW~-PwQYFA~s~~dC~~~F 48 (118)
+.|- |+-|+ ||++|.++--||.+-.
T Consensus 68 ~vDP--gr~WKgpWRwydesMLdCC~pL 93 (388)
T KOG0632|consen 68 SVDP--GRKWKGPWRWYDESMLDCCEPL 93 (388)
T ss_pred ccCC--cccccCCchhhhhHHHhhcccH
Confidence 5666 89997 9999999888998766
No 13
>PF05895 DUF859: Siphovirus protein of unknown function (DUF859); InterPro: IPR008577 This entry is represented by Streptococcus phage 7201, Orf39. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several uncharacterised proteins from a number of the Siphoviruses as well as some bacterial proteins from Streptococcus species. Some of the members of this family are described as putative minor structural proteins.
Probab=24.57 E-value=48 Score=30.32 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=20.9
Q ss_pred CcceEEEeecCCCCCCceeeeeeeccCC
Q psy12093 13 TTEVFVTSRFSHGIQHWVINSWQYFAVS 40 (118)
Q Consensus 13 ~~e~~i~eRS~d~~~G~tW~PwQYFA~s 40 (118)
+-..|++.|..+. ..|+||+.|+..
T Consensus 535 ~~g~~~~rr~~~~---n~W~pW~e~a~~ 559 (624)
T PF05895_consen 535 RNGQMFFRRSREN---NSWGPWKEVATK 559 (624)
T ss_pred CCCcEEEEEEeeC---CCccccEEEecc
Confidence 4456788999887 999999999974
Done!