Query psy12093
Match_columns 118
No_of_seqs 103 out of 339
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 18:34:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12093.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12093hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w0pa3 b.68.1.1 (A:217-346,A: 74.8 0.91 6.6E-05 32.1 2.8 29 8-38 32-63 (364)
2 d3sila_ b.68.1.1 (A:) Salmonel 68.2 1.3 9.5E-05 32.2 2.4 26 10-38 59-84 (379)
3 d2slia2 b.68.1.1 (A:277-759) L 66.2 1.1 8.2E-05 33.8 1.7 18 17-36 49-66 (483)
4 d2ah2a2 b.68.1.1 (A:1-399) Try 65.9 1.5 0.00011 33.2 2.4 20 17-38 65-84 (399)
5 d1w8oa3 b.68.1.1 (A:47-402) Mi 60.9 2 0.00014 29.5 2.1 23 14-38 50-72 (356)
6 d2ebsa1 b.69.13.1 (A:4-430) Ol 24.5 23 0.0017 25.3 2.8 14 19-34 323-336 (427)
7 d1uoka1 b.71.1.1 (A:480-558) O 21.9 43 0.0032 18.7 3.3 28 9-39 6-33 (79)
8 d1m53a1 b.71.1.1 (A:521-598) I 19.1 55 0.004 18.1 3.3 29 9-40 6-34 (78)
9 d1so7a_ b.68.1.1 (A:) Sialidas 17.8 33 0.0024 23.7 2.4 22 14-37 118-139 (374)
10 d1x3ha2 g.39.1.3 (A:43-74) Leu 12.6 33 0.0024 17.5 0.8 15 75-91 7-21 (32)
No 1
>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]}
Probab=74.83 E-value=0.91 Score=32.12 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=20.6
Q ss_pred cCCCCCcce---EEEeecCCCCCCceeeeeeecc
Q psy12093 8 NKDPGTTEV---FVTSRFSHGIQHWVINSWQYFA 38 (118)
Q Consensus 8 ~~~~~~~e~---~i~eRS~d~~~G~tW~PwQYFA 38 (118)
..+++.... .++.||.|+ |+||.+.+.-+
T Consensus 32 ~~~~~~~~~~~di~~~RS~Dg--GkTWs~~~~i~ 63 (364)
T d1w0pa3 32 GGDPGALSNTNDIITRTSRDG--GITWDTELNLT 63 (364)
T ss_dssp CSSTTCTTCEEEEEEEEESSS--SSSCCCCEESS
T ss_pred CCCCcccCCcceEEEEEeCCC--CcCCCCCEEee
Confidence 345544332 489999999 99999877543
No 2
>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]}
Probab=68.16 E-value=1.3 Score=32.19 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=20.0
Q ss_pred CCCCcceEEEeecCCCCCCceeeeeeecc
Q psy12093 10 DPGTTEVFVTSRFSHGIQHWVINSWQYFA 38 (118)
Q Consensus 10 ~~~~~e~~i~eRS~d~~~G~tW~PwQYFA 38 (118)
|.+ ..-+++.||.|+ |+||.+-+.-.
T Consensus 59 d~~-~~div~~rS~Dg--GkTWs~~~~i~ 84 (379)
T d3sila_ 59 DQS-FIDTAAARSTDG--GKTWNKKIAIY 84 (379)
T ss_dssp SSS-CEEEEEEEESSS--SSCCEEEEEEC
T ss_pred CCC-CceEEEEEecCC--ccCCCCCEEcc
Confidence 444 344689999999 99999987654
No 3
>d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=66.22 E-value=1.1 Score=33.82 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=15.8
Q ss_pred EEEeecCCCCCCceeeeeee
Q psy12093 17 FVTSRFSHGIQHWVINSWQY 36 (118)
Q Consensus 17 ~i~eRS~d~~~G~tW~PwQY 36 (118)
+++.||.|+ |+||++.+-
T Consensus 49 i~~~RStDg--GkTWs~~~~ 66 (483)
T d2slia2 49 IAFAKSTDG--GNTWSEPTL 66 (483)
T ss_dssp EEEEEESST--TSSCCCCEE
T ss_pred EEEEEecCC--CCCCCCCCc
Confidence 689999999 999998763
No 4
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Probab=65.88 E-value=1.5 Score=33.19 Aligned_cols=20 Identities=5% Similarity=-0.238 Sum_probs=17.7
Q ss_pred EEEeecCCCCCCceeeeeeecc
Q psy12093 17 FVTSRFSHGIQHWVINSWQYFA 38 (118)
Q Consensus 17 ~i~eRS~d~~~G~tW~PwQYFA 38 (118)
+|++||.|+ |+||.|-+.-.
T Consensus 65 iv~rRS~D~--GkTWs~~~~v~ 84 (399)
T d2ah2a2 65 TVAKYSVDD--GETWETQIAIK 84 (399)
T ss_dssp EEEEEESST--TSSCEEEEEEC
T ss_pred EEEEeecCC--CcCCCceEEEe
Confidence 599999999 99999988665
No 5
>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=60.92 E-value=2 Score=29.51 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=18.5
Q ss_pred cceEEEeecCCCCCCceeeeeeecc
Q psy12093 14 TEVFVTSRFSHGIQHWVINSWQYFA 38 (118)
Q Consensus 14 ~e~~i~eRS~d~~~G~tW~PwQYFA 38 (118)
+...++.||.|+ |+||.+-+...
T Consensus 50 ~~~i~~~rS~D~--G~TWs~~~~v~ 72 (356)
T d1w8oa3 50 PNSILQRRSTDG--GRTWGEQQVVS 72 (356)
T ss_dssp CCEEEEEEESST--TSSCCCCEEEE
T ss_pred CceEEEEEccCC--CCCCCCCEEee
Confidence 344588999999 99999887655
No 6
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}
Probab=24.49 E-value=23 Score=25.33 Aligned_cols=14 Identities=0% Similarity=-0.311 Sum_probs=12.0
Q ss_pred EeecCCCCCCceeeee
Q psy12093 19 TSRFSHGIQHWVINSW 34 (118)
Q Consensus 19 ~eRS~d~~~G~tW~Pw 34 (118)
+-||.|+ |+||++.
T Consensus 323 i~~S~Dg--G~TW~~i 336 (427)
T d2ebsa1 323 IYLSTDA--GATWKDV 336 (427)
T ss_dssp EEEESST--TSSEEEH
T ss_pred EEECCCC--CcCcccc
Confidence 5689999 9999875
No 7
>d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 1396]}
Probab=21.87 E-value=43 Score=18.66 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=24.5
Q ss_pred CCCCCcceEEEeecCCCCCCceeeeeeeccC
Q psy12093 9 KDPGTTEVFVTSRFSHGIQHWVINSWQYFAV 39 (118)
Q Consensus 9 ~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~ 39 (118)
-+|..+.++++.|..++ +++-..--||.
T Consensus 6 l~~~~~~V~aY~R~~~~---~~~lVv~NfS~ 33 (79)
T d1uoka1 6 ILENNPSIFAYVRTYGV---EKLLVIANFTA 33 (79)
T ss_dssp ESTTCSSEEEEEEEETT---EEEEEEEECSS
T ss_pred ccCCCCcEEEEEEECCC---cEEEEEEeCCC
Confidence 36778899999999987 99999999995
No 8
>d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}
Probab=19.08 E-value=55 Score=18.10 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=24.7
Q ss_pred CCCCCcceEEEeecCCCCCCceeeeeeeccCC
Q psy12093 9 KDPGTTEVFVTSRFSHGIQHWVINSWQYFAVS 40 (118)
Q Consensus 9 ~~~~~~e~~i~eRS~d~~~G~tW~PwQYFA~s 40 (118)
-+|..|.++++.|..++ +++-..--|+..
T Consensus 6 l~~~~~~v~aY~R~~~~---~~~lVv~NfS~~ 34 (78)
T d1m53a1 6 LNPQDNTVYAYTRTLGN---ERYLVVVNFKEY 34 (78)
T ss_dssp SCTTCSSEEEEEEEETT---EEEEEEEECSSS
T ss_pred ccCCCCcEEEEEEEcCC---eEEEEEEeCCCC
Confidence 46788999999999987 999888888853
No 9
>d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.81 E-value=33 Score=23.75 Aligned_cols=22 Identities=5% Similarity=-0.142 Sum_probs=16.4
Q ss_pred cceEEEeecCCCCCCceeeeeeec
Q psy12093 14 TEVFVTSRFSHGIQHWVINSWQYF 37 (118)
Q Consensus 14 ~e~~i~eRS~d~~~G~tW~PwQYF 37 (118)
...+.+.+|.|+ |+||.+.+-.
T Consensus 118 ~~~~~~~~S~D~--G~TWs~p~~i 139 (374)
T d1so7a_ 118 VTRLCQVTSTDH--GRTWSSPRDL 139 (374)
T ss_dssp CCEEEEEEESST--TSSCCCCEEC
T ss_pred cccEEEEeCCCC--cccccCceec
Confidence 344567889998 9999877644
No 10
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.55 E-value=33 Score=17.45 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.7
Q ss_pred ccCCCCeEEEEeeCCCC
Q psy12093 75 KPLEGGELTKFKTKAYL 91 (118)
Q Consensus 75 ~Pl~~GeV~fs~L~gRp 91 (118)
.|+++|. |.+++|||
T Consensus 7 ~PF~~~~--Fy~~~g~P 21 (32)
T d1x3ha2 7 TSFSTGS--FFELDGRP 21 (32)
T ss_dssp CBSCSSC--CEESSSCE
T ss_pred CcCCCCC--eEeECCcc
Confidence 4666654 66777776
Done!