RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12093
         (118 letters)



>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
           basement membrane; HET: NAG; 2.90A {Mus musculus}
          Length = 403

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 34  WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGELT 83
           WQ+FA S  +C  ++G            D DVICT+ YS++ PLE GE+ 
Sbjct: 151 WQFFASSKRDCLERFGP---RTLERITQDDDVICTTEYSRIVPLENGEIV 197


>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
           LE-domain, N neuronal cell adhesion molecule, netrin G
           ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
           PDB: 3zyg_A* 3zyi_B*
          Length = 338

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 34  WQYFAVSDDECWTQYGILASPANPLFLS-DSDVICTSHYSKLKPLEGGELTKFKT 87
           +Q++A   ++C   +G+ A  A  +  S    V+CT  YS+    +  +  +F+ 
Sbjct: 147 YQFYA---EDCMEAFGMSARRARDMSSSSAHRVLCTEEYSRWAGSKKEKHVRFEV 198


>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
           musculus}
          Length = 375

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 34  WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGELT 83
           +QY++     C   Y             +   +CT  +S + PL GG + 
Sbjct: 144 YQYYS---GSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVA 190


>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
           {Mus musculus}
          Length = 525

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 34  WQYFAVSDDECWTQYGILASPANPLFLSDSDVICTSHYSKLKPLEGGELT 83
           ++YFA    +C + +      +        D+IC S YS ++P   GE+ 
Sbjct: 146 YRYFA---YDCESSFPG---ISTGPMKKVDDIICDSRYSDIEPSTEGEVI 189


>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
           sapiens}
          Length = 426

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 34  WQYFAVSDDECWTQYGILA-SPANPLFLSDSDVICTSHYSKLKPLEGGEL 82
           +QY+A    +C   + +   S  +    +  ++ICT  YS         +
Sbjct: 175 YQYYA---TDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKII 221


>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
           protein structural and functional analyses; 1.95A
           {Pyrococcus horikoshii}
          Length = 333

 Score = 26.0 bits (58), Expect = 3.2
 Identities = 4/17 (23%), Positives = 8/17 (47%)

Query: 54  PANPLFLSDSDVICTSH 70
             + LF  + + + T H
Sbjct: 268 REHELFKYEWETVLTPH 284


>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo
          sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
          Length = 123

 Score = 25.2 bits (55), Expect = 3.9
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 37 FAVSDDECWTQYGILASPANPLFLSDS 63
            +SD        +LA+  NPL   + 
Sbjct: 47 LLMSDGLNTLSSFMLATQLNPLVEEEQ 73


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,781,186
Number of extensions: 86579
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 9
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)