RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12093
(118 letters)
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 27.3 bits (60), Expect = 0.18
Identities = 5/44 (11%), Positives = 10/44 (22%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
++ N D + FS S + +
Sbjct: 12 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF 55
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 27.4 bits (61), Expect = 0.23
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 37 FAVSDDECWTQYGILASPANPLFLSD 62
+SD +LA+ NPL +
Sbjct: 42 LLMSDGLNTLSSFMLATQLNPLVEEE 67
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 25.8 bits (56), Expect = 0.93
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 2 KCTYVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWT 46
+VG P T+ + F I+ + + + + +
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYES 62
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.0 bits (54), Expect = 1.4
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 1 KKCTYVGNKDPGTTEVFVTSRFS--HGIQHWVINSWQYFAVSDDECWTQY 48
K+ YVG + + + F I I + ++
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 54
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.6 bits (53), Expect = 1.5
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGI 50
++G TT+ + FS + + +G
Sbjct: 3 FIGGLSWDTTKKDLKDYFS---KFGEVVDCTLKLDPITGRSRGFGF 45
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 24.9 bits (54), Expect = 1.6
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 5 YVGNKDPGTTEVFVTSRFSH--GIQHWVINSWQYFAVSDDECWTQY 48
YVG+ P TE + +FS I + S + +
Sbjct: 4 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 49
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 24.6 bits (53), Expect = 1.9
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
+V N + + F + + S + +
Sbjct: 15 HVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF 58
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.2 bits (52), Expect = 2.9
Identities = 6/44 (13%), Positives = 10/44 (22%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
V N T E + F I + + +
Sbjct: 12 RVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 55
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.2 bits (52), Expect = 3.3
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
YVG D +E + F + + + +
Sbjct: 13 YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 56
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.3 bits (52), Expect = 3.3
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
+VGN TE + FS + +
Sbjct: 12 FVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFC 55
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 23.6 bits (50), Expect = 4.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 5 YVGNKDPGTTEVFVTSRFS---HGIQHWVINSWQYFAVSDDECWTQY 48
++GN DP E + FS +Q I S + +
Sbjct: 2 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 48
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 23.5 bits (50), Expect = 5.0
Identities = 2/44 (4%), Positives = 11/44 (25%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
++ + + + F + + +C+
Sbjct: 22 FIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 65
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 23.5 bits (50), Expect = 5.1
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
+V N ++E + FS ++ + +
Sbjct: 12 FVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 55
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 23.2 bits (49), Expect = 5.5
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 3 CT-YVGNKDPGTTEVFVTSRFSH--GIQHWVINSWQYFAVSDDECWTQYG 49
CT ++ N P T+ + + + F S +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVT 51
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.5 bits (50), Expect = 5.6
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGIL 51
++ N + TTE + FS + + +G +
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFV 48
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.4 bits (50), Expect = 5.9
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 1 KKCT-YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYGILASPA 55
K CT YVGN TTE + FS + C + S A
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 23.1 bits (49), Expect = 6.2
Identities = 4/46 (8%), Positives = 12/46 (26%)
Query: 3 CTYVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
+V + E + +F + I+ + +
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALV 54
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 23.0 bits (49), Expect = 6.2
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 3/45 (6%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQYG 49
YV N T+ + + F ++ I
Sbjct: 10 YVTNLPRTITDDQLDTIFG---KYGSIVQKNILRDKLTGRPRGVA 51
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 23.1 bits (49), Expect = 7.1
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
YVGN TEV + FS +D C+ ++
Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF 55
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 23.1 bits (49), Expect = 8.6
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYF 37
N TE + F ++ +++
Sbjct: 20 LAKNLSFNITEDELKEVFEDALEIRLVSQDGKS 52
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 22.7 bits (48), Expect = 9.0
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQY 36
++G + V + N +
Sbjct: 5 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 36
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 22.4 bits (47), Expect = 9.5
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 5 YVGNKDPGTTEVFVTSRFSHGIQHWVINSWQYFAVSDDECWTQY 48
Y+ PGTT+ + + + + + +
Sbjct: 2 YIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFV 45
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 22.4 bits (48), Expect = 9.6
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 35 QYFAVSDDECWTQYGILASPANPLFLSDS 63
+YF C + G+ AS + D+
Sbjct: 60 RYF-----ICPPKQGLFASVSKISKAVDA 83
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 22.7 bits (48), Expect = 10.0
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 2 KCTYVGNKDPGTTEVFVTSRFS--HGIQHWVINSWQYFA 38
K YV N T+E + F+ + + +A
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYA 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.426
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,125
Number of extensions: 17613
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 29
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)