BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12095
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 12 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E
Sbjct: 72 QFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 130
Query: 123 E 123
E
Sbjct: 131 E 131
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP +
Sbjct: 143 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 202
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 203 NESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 242
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 175 bits (443), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 35 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 94
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E
Sbjct: 95 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 174 bits (442), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 10 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 69
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E
Sbjct: 70 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 127
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 27 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 87 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 27 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 87 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 85/121 (70%)
Query: 5 YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF 64
Y+F ++L+V +++A++LPA D GTSDP+VK+YLLPDKK K ETKV RK LNP +NETF
Sbjct: 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 80
Query: 65 VFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 124
+F+G PY + + L + D+DRFS++D IGEV + L ++DL Q W++L+
Sbjct: 81 LFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS 140
Query: 125 G 125
G
Sbjct: 141 G 141
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
L Y + ++ L V ++QA DLPA D G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FNE
Sbjct: 13 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
TF F VP A+ + L F+++DFDRFS+HD IG+V
Sbjct: 73 TFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 107
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 60
L Y A L+VT+I+A +L A+D+ G SDPYVK L+ + + KK +T + + TLNP +
Sbjct: 145 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
NE VF P + N L A+ D+D ++ IG +V D E W E+
Sbjct: 205 NEALVFDVAPES-VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEM 259
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
L Y + ++ L V ++QA DLPA D G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FNE
Sbjct: 14 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 73
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
TF F VP A+ + L F+++DFDRFS+HD IG+V
Sbjct: 74 TFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 108
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 60
L Y A L+VT+I+A +L A+D+ G SDPYVK L+ + + KK +T + + TLNP +
Sbjct: 146 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 205
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
NE VF P + N L A+ D+D ++ IG +V D E W E+
Sbjct: 206 NEALVFDVAPES-VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEM 260
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
LEY+F + V + +A LPA+D TSDPY+K+ +LP+KK K +T+V RKTL+P F+
Sbjct: 15 LEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFD 74
Query: 62 ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
ETF F G+PY L F I FDRFS+ D IGEV + L I+L++
Sbjct: 75 ETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 4 EYDFNANSLSVTVIQAEDLPA-LDMGGT------SDPYVKVYLLPDKKKKFETKVHRKTL 56
+YD N L+V VI+A DLP + G+ S+PYVK+ LLPD+K +T V RKT
Sbjct: 20 QYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQ 79
Query: 57 NPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 116
PVF E + F+ +P+ +A +TL+ + DFD+FS+H IG+V V LC++DL + W+
Sbjct: 80 KPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKA 138
Query: 117 L 117
L
Sbjct: 139 L 139
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVF 60
L YD + ++L T+I+A+ L +D G +DPYVK++LLP K K TK R T NPV+
Sbjct: 22 LLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVW 81
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
NET + G+ D KTL ++ D D+F ++ IGE + +L ++ Q
Sbjct: 82 NETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 130
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVF 60
L YD + ++L T+I+A+ L +D G +DPYVK++LLP K K TK R T NPV+
Sbjct: 20 LLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVW 79
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
NET + G+ D KTL ++ D D+F ++ IGE + +L ++ Q
Sbjct: 80 NETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 128
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFET 49
++L+ +++ +L + ++QA +L D G SDP+VKVYLLP + + K T
Sbjct: 9 IQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT 68
Query: 50 KVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
K +K+LNP +N+T ++K + M KTL ++D+DRFS +D +GEV + L
Sbjct: 69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128
Query: 110 TIEEWRELQ 118
W L+
Sbjct: 129 NTPRWYPLK 137
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
+ L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+ K+ K +T ++ LNP
Sbjct: 7 LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNP 66
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
+FNE+F F +P T++ + D D+ S++D IG K+ L ++ W+++
Sbjct: 67 IFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIG--KIYLSWKSGPGEVKHWKDM 122
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
L Y L V +I+ L A+D G SDP+VK++L PD KK K +T++ +KTLNP F
Sbjct: 30 LMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEF 89
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL------------CQIDLA 108
NE F F + ++D K+L +++D+D +D IG ++ + C +
Sbjct: 90 NEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 148
Query: 109 QTIEEWRELQS 119
+ IE W +LQ+
Sbjct: 149 KKIERWHQLQN 159
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
L Y L V +I+ L A+D G SDP+VK++L PD KK K +T++ +KTLNP F
Sbjct: 8 LMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEF 67
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL------------CQIDLA 108
NE F F + ++D K+L +++D+D +D IG ++ + C +
Sbjct: 68 NEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 126
Query: 109 QTIEEWRELQS 119
+ IE W +LQ+
Sbjct: 127 KKIERWHQLQN 137
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 15/133 (11%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNP 58
+ L Y L V +I+ L A D G SDP+VK++L PD KK K +T++ +KTLNP
Sbjct: 28 VSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNP 87
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL------------CQID 106
FNE F F + ++D K+L +++D+D +D IG ++ + C +
Sbjct: 88 EFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
Query: 107 LAQTIEEWRELQS 119
+ IE W +LQ+
Sbjct: 147 KDKKIERWHQLQN 159
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVF 66
A+ + VTV +A +L +D G SDPYVK+ L+PD + K +T+ + TLNPV+NETFVF
Sbjct: 19 ADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVF 78
Query: 67 KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW-RELQSVEGE 123
P + + L ++D+DR S++D +G + + ++ L ++ W + L EGE
Sbjct: 79 NLKP--GDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDGWYKLLNQEEGE 133
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGV 69
L VTV A++L +D G SDPYVK+ L+PD K K +TK R TLNP +NE+F FK
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
P ++ L I+D+DR +++D +G + + ++ ++ L EGE
Sbjct: 79 P--SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 130
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGV 69
L VTV A++L +D G SDPYVK+ L+PD K K +TK R TLNP +NE+F FK
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
P ++ L I+D+DR +++D +G + + ++ ++ L EGE
Sbjct: 78 P--SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 129
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGV 69
L VTV A++L D G SDPYVK+ L+PD K K +TK R TLNP +NE+F FK
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
P ++ L I+D+DR +++D G + + ++ ++ L EGE
Sbjct: 80 P--SDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKLLNQEEGE 131
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVH--RKTLNP 58
+ + + N L V V +L A G SDPYV++YLLPDK++ K H +KTLNP
Sbjct: 15 LTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNP 73
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRE 116
VF+++F F V + +TL A+ + F D+ +G+V VAL +LA+ +W +
Sbjct: 74 VFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYD 132
Query: 117 LQSVEG 122
L G
Sbjct: 133 LTEDSG 138
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
+KL +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P
Sbjct: 12 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 71
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRE 116
+N+TF++ V + + L ++D R + + +GE+ + L + L W +
Sbjct: 72 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-ETALLDDEPHWYK 130
Query: 117 LQS 119
LQ+
Sbjct: 131 LQT 133
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
+KL +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P
Sbjct: 9 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 68
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVAL 102
+N+TF++ V + + L ++D R + + +GE+ + L
Sbjct: 69 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 114
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK--TLNP 58
+ L Y N+L+V V++A LP D+ G SDPYVKV L KK+ + K H K T N
Sbjct: 21 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA 80
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
VFNE FVF +P ++ F + D +R S+++ IG +
Sbjct: 81 VFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRL 119
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP +
Sbjct: 18 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 77
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 78 NESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 117
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP +
Sbjct: 11 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 70
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 71 NESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 110
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP +
Sbjct: 10 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 69
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 70 NESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 109
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNP 58
+KL + +L + V+ +DL D G +PYVK YLLPD K K +TK+ RKT NP
Sbjct: 11 VKLSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNP 69
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
FNE V+ G + L ++ + ++ +G + + L +L++ +W +L
Sbjct: 70 TFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
Query: 119 SV 120
+
Sbjct: 130 AA 131
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
L+Y+ SL V V + L D S+PYVK YLLPDK + K +T + R T+NP+
Sbjct: 16 LKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPL 75
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ- 118
++ET ++ +P + +TL F+++ RF ++ +GE ++ + L + ++ L
Sbjct: 76 YDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG 134
Query: 119 --SVEGEG 124
S E EG
Sbjct: 135 KISAESEG 142
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYL-LPDKKKKF---ETKVHRKTLNPVFNETFVFK 67
L V V+ DL D+ G SDPYVK+ L + D+ ++ +TK +KTLNP +NE F F+
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 68 GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
P N L+F +FD +R ++ D +G+V V L +
Sbjct: 83 VNP----SNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGV 69
L V V A++L +D G SDPYVK+ L+PD K K +TK + +LNP +NETF F+ +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-L 91
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
+D ++ L I+D+D S++D +G + + ++ A ++ L EGE
Sbjct: 92 KESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGE 144
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGV 69
L V V A++L +D G SDPYVK+ L+PD K K +TK + +LNP +NETF F+ +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ-L 232
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
+D ++ L I+D+D S++D +G + + ++ A ++ L EGE
Sbjct: 233 KESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGE 285
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPV 59
LE + N+ + V VI L D+ G SDPYV+V L +TK +K+LNP
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
+NE +F+ P L+F +FD +R ++ D +G+V V L
Sbjct: 73 WNEEILFRVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYL---LPDKKKKFETKVHRKTLNPVFNETFVFKG 68
+ V VI L D+ G SDPYV+V L + +TK +K+LNP +NE +F+
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 69 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
+P ++F +FD +R ++ D +G+V V L +
Sbjct: 70 LP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 10 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVF 66
L V VI+A L T PYVKVYLL + K +T++ RKTL+P++ ++ VF
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 67 KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
P + V D+ R G ++ L ++DL+ + W +L
Sbjct: 90 DESPQGKVLQ---VIVWGDYGRXDHKCFXGVAQILLEELDLSSXVIGWYKL 137
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV--FNETFVFKGV 69
L V VI+A +L A G S+PY ++ + + + T+ + TLNP FN F K
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWNFNCQFFIK-- 443
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
D L +FD D+FS D +G ++ + +I Q
Sbjct: 444 ---DLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQ 480
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
+S+TV+ A+ L A D G+SDPYV V + KK+ TK LNPV+ E F F+
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR---TKTIYGNLNPVWEENFHFECHNS 75
Query: 72 ADAM 75
+D +
Sbjct: 76 SDRI 79
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
L V V++A DL A D G SDP+ + L D+ +T K LNP +N+ F F P
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTF---PI 68
Query: 72 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
D ++ L +FD D D +G+V + L I Q
Sbjct: 69 KD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 26 DMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVF 66
DM T DPYV++++ PD +K+ T+ +NPV+NETF F
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNETFEF 62
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 26 DMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVF 66
DM T DPYV++++ PD +K+ T+ +NPV+NETF F
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNETFEF 77
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 26 DMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVF 66
DM T DPYV++++ PD +K+ T+ +NPV+NETF F
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNETFEF 77
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNP 58
++L D L + +I+ + L + GT DPYVK+ L+P+ + + +T+ +P
Sbjct: 18 LRLSIDAQDRVLLLHIIEGKGLIS-KQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDP 76
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIG 96
F+E F F V D + LV ++R S+ Q G
Sbjct: 77 AFHEHFFFP-VQEEDDQKRLLVTV---WNRASQSRQSG 110
>pdb|2Z0U|A Chain A, Crystal Structure Of C2 Domain Of Kibra Protein
pdb|2Z0U|B Chain B, Crystal Structure Of C2 Domain Of Kibra Protein
Length = 155
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK---FETKVHRKTLN 57
+ L+YD ++ +IQ +L AL ++V +LP + F T+ +
Sbjct: 34 IALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDT 93
Query: 58 PVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
VFNE F + Y KTL + DR + +G +++L ++
Sbjct: 94 LVFNEVF-WVSXSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGV 69
+L V ++ A+ L D DPYV++ +K + T P +NETF+F
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTT--PEWNETFIFT-- 65
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
L IFD D ++ D +GE + L
Sbjct: 66 --VSEGTTELKAKIFDKDVGTEDDAVGEATIPL 96
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVF- 66
++ L V V A ++P G DP V V K +K +TK LNPV+NE F
Sbjct: 5 SSGMLRVIVESASNIPKTKFG-KPDPIVSVIF---KDEKKKTKKVDNELNPVWNEILEFD 60
Query: 67 -KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 125
+G+P + +L + DF+ ++ IG VAL + Q+ +L S+ E G
Sbjct: 61 LRGIPL--DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKG 118
Query: 126 Q 126
Q
Sbjct: 119 Q 119
>pdb|1WFM|A Chain A, The First C2 Domain Of Human Synaptotagmin Xiii
Length = 138
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPVFN 61
L+YD L VT ++A + G D YV+ + + +T + ++ L+ +
Sbjct: 19 LDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWE 75
Query: 62 ETFVFKGVPYAD--AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
E V P A+ TL + DRFS+H GE+++ L + +W EL++
Sbjct: 76 EGLVL---PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132
>pdb|3PVR|A Chain A, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex With
Benzoyl-Coa
pdb|3PVT|A Chain A, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex With
3- Hydroxybutanoyl-Coa
pdb|3PVY|A Chain A, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex With
Coenzyme A
pdb|3PW1|A Chain A, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex With
Phenylacetyl- Coa
pdb|3PW8|C Chain C, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex With
Acetyl-Coa
pdb|3PW8|D Chain D, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex With
Acetyl-Coa
pdb|3PWQ|C Chain C, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex
pdb|3PWQ|D Chain D, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex
pdb|3PWQ|F Chain F, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex
pdb|3PWQ|H Chain H, The Phenylacetyl-Coa Monooxygenase Paaac Subcomplex
Length = 311
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 23 PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFA 82
PAL M G +D P+ + K+ R T N + FV VP + + T+
Sbjct: 192 PALMMFGPNDDNS-----PNSARSLTWKIKRFT-NDELRQRFVDNTVPQVEMLGMTVPDP 245
Query: 83 IFDFDRFSKHDQIGEV 98
FD S H + GE+
Sbjct: 246 DLHFDTESGHYRFGEI 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,937,930
Number of Sequences: 62578
Number of extensions: 148234
Number of successful extensions: 459
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 53
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)