Query psy12095
Match_columns 128
No_of_seqs 110 out of 1098
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 18:36:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08677 C2A_Synaptotagmin-13 C 100.0 3.1E-30 6.6E-35 147.7 12.1 113 1-117 5-118 (118)
2 cd08680 C2_Kibra C2 domain fou 100.0 1.1E-28 2.4E-33 143.8 12.0 116 1-117 5-124 (124)
3 cd08393 C2A_SLP-1_2 C2 domain 100.0 2.8E-28 6E-33 142.9 13.1 117 1-118 6-125 (125)
4 cd08385 C2A_Synaptotagmin-1-5- 100.0 1.6E-27 3.4E-32 139.7 13.5 117 1-118 7-123 (124)
5 cd08389 C2A_Synaptotagmin-14_1 100.0 1.3E-27 2.7E-32 139.9 12.9 118 1-119 7-124 (124)
6 cd04029 C2A_SLP-4_5 C2 domain 100.0 2.2E-27 4.7E-32 139.0 13.7 117 1-118 6-125 (125)
7 cd08387 C2A_Synaptotagmin-8 C2 100.0 1.9E-27 4.2E-32 139.3 13.5 118 1-119 7-124 (124)
8 cd08381 C2B_PI3K_class_II C2 d 100.0 1.8E-27 4E-32 138.8 13.3 114 1-117 6-121 (122)
9 cd08392 C2A_SLP-3 C2 domain fi 100.0 2.4E-27 5.3E-32 139.1 13.2 117 1-118 6-128 (128)
10 cd08388 C2A_Synaptotagmin-4-11 100.0 8.4E-27 1.8E-31 137.0 14.1 119 1-119 7-128 (128)
11 cd08406 C2B_Synaptotagmin-12 C 100.0 1.3E-27 2.9E-32 141.4 10.1 119 1-122 6-126 (136)
12 cd08407 C2B_Synaptotagmin-13 C 100.0 2.5E-27 5.5E-32 140.2 10.5 119 1-122 6-128 (138)
13 cd08386 C2A_Synaptotagmin-7 C2 99.9 1.8E-26 3.8E-31 135.4 13.3 119 1-119 7-125 (125)
14 cd08692 C2B_Tac2-N C2 domain s 99.9 9.9E-27 2.1E-31 136.2 11.2 119 1-122 5-126 (135)
15 cd04028 C2B_RIM1alpha C2 domai 99.9 4.8E-26 1E-30 135.7 14.1 116 1-122 22-141 (146)
16 cd04030 C2C_KIAA1228 C2 domain 99.9 3.8E-26 8.3E-31 134.3 13.6 117 1-118 7-127 (127)
17 cd08521 C2A_SLP C2 domain firs 99.9 4.9E-26 1.1E-30 133.1 13.2 116 1-117 5-123 (123)
18 cd08390 C2A_Synaptotagmin-15-1 99.9 7.4E-26 1.6E-30 132.4 12.9 118 1-119 5-123 (123)
19 cd04031 C2A_RIM1alpha C2 domai 99.9 2.8E-25 6.1E-30 130.3 13.4 117 1-118 7-125 (125)
20 cd08384 C2B_Rabphilin_Doc2 C2 99.9 9.9E-26 2.1E-30 133.5 11.0 120 1-123 4-125 (133)
21 cd08409 C2B_Synaptotagmin-15 C 99.9 7.3E-26 1.6E-30 134.5 10.2 120 1-122 6-127 (137)
22 cd08408 C2B_Synaptotagmin-14_1 99.9 8.4E-26 1.8E-30 134.2 10.0 120 1-122 6-128 (138)
23 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 5.2E-25 1.1E-29 134.0 12.9 119 1-119 6-138 (162)
24 cd08685 C2_RGS-like C2 domain 99.9 4.6E-25 1E-29 128.1 12.0 113 2-117 4-119 (119)
25 cd08404 C2B_Synaptotagmin-4 C2 99.9 3.2E-25 6.9E-30 131.8 10.6 119 1-122 6-126 (136)
26 cd08405 C2B_Synaptotagmin-7 C2 99.9 4.2E-25 9.2E-30 131.2 10.4 119 1-122 6-126 (136)
27 cd08402 C2B_Synaptotagmin-1 C2 99.9 4.7E-25 1E-29 131.0 10.5 119 1-122 6-126 (136)
28 cd08403 C2B_Synaptotagmin-3-5- 99.9 4.8E-25 1.1E-29 130.7 10.3 120 1-123 5-126 (134)
29 cd08395 C2C_Munc13 C2 domain t 99.9 3.6E-24 7.8E-29 123.9 12.5 111 11-123 1-116 (120)
30 cd00276 C2B_Synaptotagmin C2 d 99.9 2.9E-24 6.4E-29 127.3 10.7 119 1-122 5-125 (134)
31 cd08682 C2_Rab11-FIP_classI C2 99.9 7.4E-24 1.6E-28 124.4 12.2 106 12-121 1-111 (126)
32 cd08410 C2B_Synaptotagmin-17 C 99.9 2.5E-24 5.5E-29 127.7 10.3 120 1-122 5-126 (135)
33 cd04016 C2_Tollip C2 domain pr 99.9 1.3E-23 2.9E-28 121.8 12.7 104 10-121 2-107 (121)
34 cd08379 C2D_MCTP_PRT_plant C2 99.9 8.6E-23 1.9E-27 119.1 11.9 104 11-121 1-113 (126)
35 cd04010 C2B_RasA3 C2 domain se 99.9 8.3E-23 1.8E-27 122.3 12.0 109 11-122 1-125 (148)
36 cd08681 C2_fungal_Inn1p-like C 99.9 9E-23 1.9E-27 118.5 11.2 111 10-127 1-112 (118)
37 cd04022 C2A_MCTP_PRT_plant C2 99.9 6.8E-23 1.5E-27 120.5 10.6 107 11-121 1-110 (127)
38 cd04036 C2_cPLA2 C2 domain pre 99.9 1.5E-22 3.3E-27 117.7 11.3 107 12-122 2-108 (119)
39 cd04035 C2A_Rabphilin_Doc2 C2 99.9 4.9E-22 1.1E-26 116.2 13.1 116 1-117 6-123 (123)
40 cd08376 C2B_MCTP_PRT C2 domain 99.9 3.1E-22 6.7E-27 115.9 12.1 104 11-120 1-104 (116)
41 cd08688 C2_KIAA0528-like C2 do 99.9 1.8E-22 3.9E-27 115.9 10.9 104 12-119 1-109 (110)
42 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 6.8E-22 1.5E-26 115.6 13.0 105 11-121 1-105 (123)
43 cd04042 C2A_MCTP_PRT C2 domain 99.9 4.2E-22 9.2E-27 116.2 11.5 105 11-121 1-105 (121)
44 cd04026 C2_PKC_alpha_gamma C2 99.9 1.5E-21 3.2E-26 115.4 13.1 117 2-123 7-125 (131)
45 KOG1028|consensus 99.9 6.2E-22 1.4E-26 135.8 12.6 119 1-120 158-276 (421)
46 cd04009 C2B_Munc13-like C2 dom 99.9 1.7E-21 3.7E-26 115.3 12.6 107 1-108 7-119 (133)
47 cd04041 C2A_fungal C2 domain f 99.9 6.7E-22 1.5E-26 113.7 10.5 105 10-118 1-107 (111)
48 KOG0696|consensus 99.9 4.9E-23 1.1E-27 138.4 6.2 117 3-122 173-291 (683)
49 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 4.1E-21 8.9E-26 111.9 13.0 104 12-121 2-106 (121)
50 cd04050 C2B_Synaptotagmin-like 99.9 3.5E-21 7.6E-26 109.7 10.9 101 12-121 2-104 (105)
51 cd04024 C2A_Synaptotagmin-like 99.9 6.9E-21 1.5E-25 112.0 12.4 106 10-121 1-111 (128)
52 cd04019 C2C_MCTP_PRT_plant C2 99.9 4.9E-21 1.1E-25 115.2 11.8 105 11-121 1-110 (150)
53 cd08675 C2B_RasGAP C2 domain s 99.9 8.4E-21 1.8E-25 112.7 12.4 108 12-121 1-122 (137)
54 cd08378 C2B_MCTP_PRT_plant C2 99.9 4.4E-21 9.5E-26 111.7 10.8 100 11-121 1-105 (121)
55 cd08678 C2_C21orf25-like C2 do 99.9 7.1E-21 1.5E-25 111.7 11.5 103 12-121 1-103 (126)
56 cd08676 C2A_Munc13-like C2 dom 99.9 9.2E-21 2E-25 113.9 11.4 105 5-117 23-153 (153)
57 cd04017 C2D_Ferlin C2 domain f 99.9 1.6E-20 3.5E-25 111.4 12.4 116 10-128 1-126 (135)
58 cd04043 C2_Munc13_fungal C2 do 99.9 3.5E-20 7.6E-25 108.8 12.9 109 10-121 1-112 (126)
59 cd04049 C2_putative_Elicitor-r 99.9 2.3E-20 5E-25 109.3 12.0 108 10-121 1-110 (124)
60 cd08391 C2A_C2C_Synaptotagmin_ 99.9 2.6E-20 5.5E-25 108.6 11.9 104 10-120 1-110 (121)
61 cd08400 C2_Ras_p21A1 C2 domain 99.9 4.6E-20 1E-24 108.2 13.0 103 10-121 4-106 (126)
62 cd08375 C2_Intersectin C2 doma 99.9 1.6E-20 3.5E-25 111.3 11.2 95 7-107 12-106 (136)
63 KOG1030|consensus 99.9 4.2E-21 9.2E-26 114.4 8.5 97 9-112 5-101 (168)
64 cd08394 C2A_Munc13 C2 domain f 99.9 2.3E-20 5E-25 108.1 11.2 99 10-120 2-102 (127)
65 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 3.2E-20 7E-25 108.2 12.0 104 12-121 2-106 (121)
66 cd04011 C2B_Ferlin C2 domain s 99.9 1.7E-20 3.7E-25 107.8 10.4 105 7-119 1-110 (111)
67 cd04039 C2_PSD C2 domain prese 99.9 2.6E-20 5.6E-25 106.4 11.1 96 10-110 1-100 (108)
68 cd04045 C2C_Tricalbin-like C2 99.8 4.4E-20 9.6E-25 107.4 11.6 107 10-123 1-107 (120)
69 cd04040 C2D_Tricalbin-like C2 99.8 5.9E-20 1.3E-24 106.2 11.8 108 12-124 1-108 (115)
70 cd04015 C2_plant_PLD C2 domain 99.8 8E-20 1.7E-24 110.9 12.8 105 9-120 6-140 (158)
71 cd08382 C2_Smurf-like C2 domai 99.8 8.5E-20 1.8E-24 106.7 12.4 105 11-122 1-108 (123)
72 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.2E-19 2.6E-24 105.5 12.8 103 10-121 1-103 (119)
73 cd04018 C2C_Ferlin C2 domain t 99.8 7E-20 1.5E-24 110.0 11.9 109 11-124 1-130 (151)
74 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.2E-20 2E-24 107.9 12.3 106 11-120 1-116 (133)
75 cd08690 C2_Freud-1 C2 domain f 99.8 1.7E-19 3.7E-24 108.4 12.6 111 11-122 3-124 (155)
76 cd04014 C2_PKC_epsilon C2 doma 99.8 1.4E-19 2.9E-24 107.1 11.8 106 9-121 3-120 (132)
77 cd04051 C2_SRC2_like C2 domain 99.8 2E-19 4.3E-24 105.4 10.5 110 11-123 1-118 (125)
78 cd04027 C2B_Munc13 C2 domain s 99.8 6E-19 1.3E-23 103.7 12.5 104 10-122 1-115 (127)
79 KOG1028|consensus 99.8 6.7E-20 1.4E-24 125.8 9.6 118 1-121 289-408 (421)
80 cd04044 C2A_Tricalbin-like C2 99.8 6.4E-19 1.4E-23 103.1 11.1 113 10-127 2-116 (124)
81 cd04037 C2E_Ferlin C2 domain f 99.8 8.6E-19 1.9E-23 102.6 11.6 105 11-120 1-105 (124)
82 cd04046 C2_Calpain C2 domain p 99.8 2.2E-18 4.7E-23 101.2 13.0 101 9-119 2-102 (126)
83 cd08373 C2A_Ferlin C2 domain f 99.8 1.7E-18 3.7E-23 101.7 11.8 100 16-121 2-101 (127)
84 cd04048 C2A_Copine C2 domain f 99.8 1.7E-18 3.6E-23 100.8 10.3 103 16-121 6-116 (120)
85 cd04038 C2_ArfGAP C2 domain pr 99.8 2.5E-18 5.5E-23 102.7 11.0 91 10-108 2-92 (145)
86 cd04032 C2_Perforin C2 domain 99.8 4.3E-18 9.3E-23 99.5 11.5 93 8-106 26-118 (127)
87 cd04013 C2_SynGAP_like C2 doma 99.8 4.1E-18 8.9E-23 101.5 11.5 103 10-123 11-117 (146)
88 cd08383 C2A_RasGAP C2 domain ( 99.8 1.4E-17 3.1E-22 96.4 12.2 102 12-122 2-103 (117)
89 cd08691 C2_NEDL1-like C2 domai 99.8 4.1E-17 8.9E-22 96.6 12.9 105 11-121 2-123 (137)
90 cd00275 C2_PLC_like C2 domain 99.8 5.6E-17 1.2E-21 95.3 11.7 106 10-122 2-113 (128)
91 cd04021 C2_E3_ubiquitin_ligase 99.7 7.2E-17 1.6E-21 94.5 11.3 104 10-121 2-110 (125)
92 cd08374 C2F_Ferlin C2 domain s 99.7 6E-17 1.3E-21 95.0 10.5 99 11-110 1-126 (133)
93 cd08686 C2_ABR C2 domain in th 99.7 2.3E-16 5E-21 90.4 10.3 83 12-104 1-92 (118)
94 cd04047 C2B_Copine C2 domain s 99.7 4.1E-16 8.9E-21 89.4 10.5 92 14-107 4-100 (110)
95 PLN03200 cellulose synthase-in 99.7 1.5E-16 3.1E-21 123.4 10.1 110 9-125 1979-2088(2102)
96 PF00168 C2: C2 domain; Inter 99.7 2.5E-16 5.5E-21 86.0 8.5 85 12-99 1-85 (85)
97 cd04052 C2B_Tricalbin-like C2 99.7 5.4E-16 1.2E-20 89.1 8.3 86 28-119 10-96 (111)
98 PLN03008 Phospholipase D delta 99.6 2.3E-15 5.1E-20 108.8 11.1 87 29-122 75-161 (868)
99 smart00239 C2 Protein kinase C 99.6 1.7E-14 3.6E-19 80.8 11.4 99 11-112 1-99 (101)
100 cd00030 C2 C2 domain. The C2 d 99.6 3.9E-14 8.4E-19 79.1 10.9 101 12-117 1-102 (102)
101 KOG2059|consensus 99.6 1.7E-14 3.7E-19 101.8 7.9 107 9-122 4-110 (800)
102 PLN02223 phosphoinositide phos 99.5 2.7E-13 5.8E-18 94.7 11.9 108 10-123 409-523 (537)
103 KOG1011|consensus 99.5 2E-14 4.3E-19 101.5 6.1 103 10-121 295-408 (1283)
104 PLN02952 phosphoinositide phos 99.5 4.2E-13 9.2E-18 95.2 12.3 109 9-123 469-585 (599)
105 KOG0905|consensus 99.5 8.9E-14 1.9E-18 102.9 6.1 117 2-120 1518-1636(1639)
106 PLN02230 phosphoinositide phos 99.4 1.4E-12 3.1E-17 92.4 10.7 109 9-123 468-584 (598)
107 PLN02222 phosphoinositide phos 99.4 3.8E-12 8.2E-17 90.2 11.1 108 9-122 451-566 (581)
108 KOG0169|consensus 99.4 1.7E-12 3.7E-17 92.7 8.2 101 11-114 617-724 (746)
109 PLN02228 Phosphoinositide phos 99.4 9.6E-12 2.1E-16 87.9 10.9 107 10-122 431-546 (567)
110 KOG1328|consensus 99.4 3.5E-13 7.6E-18 96.0 3.5 104 2-106 939-1048(1103)
111 PLN02270 phospholipase D alpha 99.3 5.2E-11 1.1E-15 86.6 11.1 107 9-122 7-132 (808)
112 COG5038 Ca2+-dependent lipid-b 99.3 2.8E-11 6E-16 90.0 9.3 107 8-119 1038-1144(1227)
113 cd08684 C2A_Tac2-N C2 domain f 99.2 2.7E-11 5.8E-16 65.2 5.2 101 13-117 2-103 (103)
114 COG5038 Ca2+-dependent lipid-b 99.2 1.5E-10 3.3E-15 86.2 9.5 96 8-109 434-531 (1227)
115 KOG1328|consensus 99.2 4.7E-12 1E-16 90.4 -0.2 108 11-122 115-286 (1103)
116 KOG1031|consensus 99.1 2.6E-10 5.7E-15 80.4 7.5 107 10-120 3-121 (1169)
117 KOG1013|consensus 99.1 2E-10 4.4E-15 75.5 6.0 112 2-116 225-338 (362)
118 cd08689 C2_fungal_Pkc1p C2 dom 99.0 1.9E-09 4.1E-14 60.3 7.2 85 12-107 1-88 (109)
119 KOG2059|consensus 99.0 1.3E-09 2.8E-14 77.8 5.8 113 10-124 131-258 (800)
120 KOG1264|consensus 98.9 2.7E-08 5.9E-13 72.6 9.4 95 10-108 1065-1163(1267)
121 KOG1013|consensus 98.8 2.2E-10 4.8E-15 75.3 -1.7 108 1-108 84-193 (362)
122 KOG1011|consensus 98.7 1.3E-07 2.8E-12 67.9 8.5 111 10-121 1125-1239(1283)
123 PLN02352 phospholipase D epsil 98.7 2.4E-07 5.3E-12 67.8 9.8 101 9-122 9-115 (758)
124 KOG1326|consensus 98.6 3.3E-08 7.2E-13 73.1 4.0 92 7-104 610-703 (1105)
125 KOG1326|consensus 98.5 3E-08 6.4E-13 73.4 0.8 116 8-127 204-325 (1105)
126 KOG2060|consensus 98.5 1.5E-07 3.2E-12 63.3 3.9 112 7-122 266-382 (405)
127 cd08683 C2_C2cd3 C2 domain fou 98.5 7.9E-07 1.7E-11 51.6 5.7 86 31-117 33-143 (143)
128 PLN02964 phosphatidylserine de 98.2 2E-06 4.3E-11 62.5 4.8 108 3-122 47-156 (644)
129 KOG3837|consensus 98.2 1.8E-06 3.9E-11 59.0 3.3 118 8-126 365-494 (523)
130 KOG1265|consensus 98.1 8.3E-06 1.8E-10 60.5 6.1 91 9-109 702-798 (1189)
131 KOG1327|consensus 98.1 3.4E-05 7.3E-10 54.7 7.8 104 16-120 142-249 (529)
132 cd08693 C2_PI3K_class_I_beta_d 97.6 0.0013 2.9E-08 40.7 9.1 94 9-105 7-120 (173)
133 cd08398 C2_PI3K_class_I_alpha 97.6 0.0024 5.2E-08 38.9 9.4 91 10-105 8-106 (158)
134 PF12416 DUF3668: Cep120 prote 97.5 0.0017 3.6E-08 44.3 9.2 102 12-120 2-114 (340)
135 cd08380 C2_PI3K_like C2 domain 97.3 0.0051 1.1E-07 37.4 8.9 95 9-105 7-107 (156)
136 cd08397 C2_PI3K_class_III C2 d 97.3 0.0031 6.8E-08 38.5 7.3 76 29-105 28-107 (159)
137 cd04012 C2A_PI3K_class_II C2 d 97.1 0.01 2.2E-07 36.7 8.6 96 9-105 7-119 (171)
138 cd08399 C2_PI3K_class_I_gamma 96.9 0.045 9.6E-07 34.1 10.2 95 9-105 9-122 (178)
139 cd08694 C2_Dock-A C2 domains f 96.7 0.035 7.5E-07 35.0 8.7 57 46-103 54-114 (196)
140 cd08695 C2_Dock-B C2 domains f 96.6 0.077 1.7E-06 33.4 10.6 57 46-103 54-112 (189)
141 PF00792 PI3K_C2: Phosphoinosi 96.4 0.084 1.8E-06 31.5 8.8 57 48-105 23-85 (142)
142 PF10358 NT-C2: N-terminal C2 96.2 0.12 2.5E-06 30.8 10.0 108 9-120 6-121 (143)
143 PF15627 CEP76-C2: CEP76 C2 do 96.1 0.15 3.2E-06 31.1 8.8 98 6-105 5-115 (156)
144 KOG1452|consensus 96.0 0.062 1.3E-06 36.4 7.0 82 6-94 47-130 (442)
145 PF14429 DOCK-C2: C2 domain in 95.8 0.061 1.3E-06 33.6 6.4 58 46-104 60-120 (184)
146 smart00142 PI3K_C2 Phosphoinos 94.9 0.33 7.1E-06 27.2 8.3 76 11-87 12-91 (100)
147 cd08679 C2_DOCK180_related C2 94.5 0.26 5.6E-06 30.7 6.2 55 49-104 56-115 (178)
148 cd08696 C2_Dock-C C2 domains f 93.9 0.61 1.3E-05 29.2 6.8 57 46-103 55-117 (179)
149 cd08697 C2_Dock-D C2 domains f 91.2 2.6 5.6E-05 26.6 10.4 58 46-104 57-123 (185)
150 KOG1327|consensus 90.4 1.3 2.9E-05 32.3 5.9 59 46-107 42-104 (529)
151 cd08687 C2_PKN-like C2 domain 90.3 2 4.3E-05 23.9 5.7 64 31-105 9-72 (98)
152 PF15625 CC2D2AN-C2: CC2D2A N- 88.1 3.3 7.1E-05 25.6 5.9 83 30-119 36-124 (168)
153 PTZ00447 apical membrane antig 85.4 10 0.00023 26.5 8.4 106 10-126 58-165 (508)
154 KOG0906|consensus 82.9 14 0.00029 28.3 7.6 75 29-104 45-123 (843)
155 PF07162 B9-C2: Ciliary basal 80.1 11 0.00025 23.2 10.7 85 14-105 6-104 (168)
156 KOG1329|consensus 78.8 3.2 7E-05 32.3 3.5 85 31-121 138-223 (887)
157 PF11618 DUF3250: Protein of u 77.7 4.4 9.5E-05 23.1 3.2 71 47-120 13-90 (107)
158 KOG0694|consensus 62.3 1.3 2.9E-05 33.2 -1.4 84 30-120 27-111 (694)
159 PF14186 Aida_C2: Cytoskeletal 60.0 37 0.00081 20.7 8.4 99 6-108 9-115 (147)
160 KOG4028|consensus 51.3 30 0.00066 20.6 3.2 29 76-104 73-101 (175)
161 PF01060 DUF290: Transthyretin 46.1 44 0.00096 17.7 3.2 24 78-101 13-36 (80)
162 PF06219 DUF1005: Protein of u 36.0 1.7E+02 0.0038 21.4 7.4 46 77-122 95-150 (460)
163 PF10409 PTEN_C2: C2 domain of 32.1 1.1E+02 0.0023 17.8 8.0 93 11-106 5-98 (134)
164 PF14909 SPATA6: Spermatogenes 31.0 1.3E+02 0.0027 18.3 8.8 73 30-106 19-100 (140)
165 PF13619 KTSC: KTSC domain 30.4 71 0.0015 15.8 2.3 18 2-19 8-25 (60)
166 KOG4027|consensus 30.2 1.4E+02 0.0031 18.6 4.9 29 75-103 81-109 (187)
167 KOG0904|consensus 25.1 3.9E+02 0.0084 22.0 7.3 92 10-105 343-456 (1076)
168 PF14924 DUF4497: Protein of u 22.5 1E+02 0.0023 17.5 2.3 30 76-105 28-60 (112)
169 KOG3508|consensus 20.3 67 0.0015 25.8 1.5 68 53-121 138-205 (932)
170 PF05735 TSP_C: Thrombospondin 20.1 1.1E+02 0.0024 19.7 2.2 22 1-22 139-160 (201)
No 1
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.97 E-value=3.1e-30 Score=147.70 Aligned_cols=113 Identities=24% Similarity=0.515 Sum_probs=102.2
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCC-CCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l 79 (128)
|+|+|.+..+.|+|+|++|++|+ . .+.+|||+++++.+. +..+.+|++.+.+.+|.|||+|.|+ ++.+++...++
T Consensus 5 fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~tL 80 (118)
T cd08677 5 YSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEESLDGTL 80 (118)
T ss_pred EEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHhCCcEE
Confidence 68999999999999999999998 2 355899999999764 3357789999999999999999999 99888888999
Q ss_pred EEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095 80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117 (128)
Q Consensus 80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L 117 (128)
.+.|||++.++++++||++.+++.++..+.+.++|.+|
T Consensus 81 ~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 81 TLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999999999999988777788899875
No 2
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.96 E-value=1.1e-28 Score=143.80 Aligned_cols=116 Identities=28% Similarity=0.449 Sum_probs=105.1
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~ 77 (128)
|+|.|++..+.|.|.|.+|+||++.+..+.+|||+++++.|+.. .+.+|++.+.+.+|.|||+|.|+ ++.+++...
T Consensus 5 ~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L~~~ 83 (124)
T cd08680 5 IGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKLYQK 83 (124)
T ss_pred EEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHhhcC
Confidence 58999999999999999999999887778899999999998773 47889999999999999999999 988888889
Q ss_pred eEEEEEEEccCCCCCceeEEEEEeccccccc-ccccceEec
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWREL 117 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~-~~~~~w~~L 117 (128)
.|.++||+++..+++++||.+.++|+++... .....||+|
T Consensus 84 ~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 84 TLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999999999999999999999554 457789986
No 3
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.96 E-value=2.8e-28 Score=142.87 Aligned_cols=117 Identities=44% Similarity=0.668 Sum_probs=104.7
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~ 77 (128)
|++.|.+..+.|.|+|++|++|++.+.. +.+|||+++.+.+.. ..+.+|++++++.+|.|||+|.|. +...++...
T Consensus 6 ~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~~l~~~ 84 (125)
T cd08393 6 FALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VEREELPTR 84 (125)
T ss_pred EEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHHHhCCC
Confidence 5899999999999999999999998865 789999999998765 345789999999999999999999 776666677
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~ 118 (128)
.|.++|||++..+++++||++.++|.++........||+|+
T Consensus 85 ~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 85 VLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 89999999999999999999999999998777788999985
No 4
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.96 E-value=1.6e-27 Score=139.69 Aligned_cols=117 Identities=74% Similarity=1.223 Sum_probs=105.1
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
|++.|++..+.|+|+|++|++|+..+..+.+|||+++.+.+......+|+++..+.+|.|+|.|.|. +...++....|.
T Consensus 7 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~ 85 (124)
T cd08385 7 FSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSELGNKTLV 85 (124)
T ss_pred EEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHHhCCCEEE
Confidence 5789999999999999999999988878889999999998766667889999999999999999999 765555556899
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~ 118 (128)
++|||++.++++++||++.++|.++..+...++|++|.
T Consensus 86 ~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 86 FSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999999999999999999998888889999986
No 5
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.96 E-value=1.3e-27 Score=139.88 Aligned_cols=118 Identities=42% Similarity=0.651 Sum_probs=106.8
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
|++.|++..+.|.|+|++|++|++.+..+..+||+++.+.+...++.+|++.+. .+|.|||+|.|..+..+++....|.
T Consensus 7 ~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~ 85 (124)
T cd08389 7 VAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALR 85 (124)
T ss_pred EEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEE
Confidence 589999999999999999999999887888899999988887777888998877 9999999999985666677778899
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~ 119 (128)
+.||+++.+++++++|.+.++|+++..+.....|++|++
T Consensus 86 ~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 86 FRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred EEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 999999999999999999999999988888889999975
No 6
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.96 E-value=2.2e-27 Score=139.01 Aligned_cols=117 Identities=36% Similarity=0.627 Sum_probs=104.0
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCC-CCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~ 77 (128)
|++.|++..+.|.|.|++|++|++.+. .+.+|||+++.+.+.+. .+.+|++++++.+|.|||+|.|. ++..++...
T Consensus 6 ~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~l~~~ 84 (125)
T cd04029 6 FSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQLETR 84 (125)
T ss_pred EEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHHhCCC
Confidence 589999999999999999999997754 47899999999987653 36789999999999999999999 876666667
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~ 118 (128)
.|.+.|||++..+++++||++.++|..+......+.|++|.
T Consensus 85 ~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 85 TLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 89999999999999999999999999998888889999984
No 7
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.96 E-value=1.9e-27 Score=139.28 Aligned_cols=118 Identities=45% Similarity=0.831 Sum_probs=106.1
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
|++.|++..+.|.|+|.+|++|+..+..+.+|||+++.+.+.+....+|++++++.+|.|+|+|.|. ++..++....|.
T Consensus 7 ~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~ 85 (124)
T cd08387 7 FSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQELPKRTLE 85 (124)
T ss_pred EEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHhCCCEEE
Confidence 5789999999999999999999988888889999999997666667889999999999999999998 776655567899
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~ 119 (128)
+.|||++.++++++||++.++|+++..+...+.|++|+.
T Consensus 86 i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08387 86 VLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124 (124)
T ss_pred EEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence 999999999999999999999999987778899999863
No 8
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.96 E-value=1.8e-27 Score=138.77 Aligned_cols=114 Identities=41% Similarity=0.754 Sum_probs=100.5
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|++.|+ .+.|.|.|++|++|++.+ .+.+|||+++.+.+... .+.+|++++++.+|.|||+|.|..++..++....
T Consensus 6 ~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~ 82 (122)
T cd08381 6 LSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRV 82 (122)
T ss_pred EEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCE
Confidence 578888 799999999999999998 88999999999987543 4678999999999999999999832555566678
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L 117 (128)
|.++|||++..+++++||++.++|.++..+.....||+|
T Consensus 83 L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 83 LQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 999999999999999999999999999887778899987
No 9
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.96 E-value=2.4e-27 Score=139.11 Aligned_cols=117 Identities=32% Similarity=0.499 Sum_probs=103.3
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~ 77 (128)
|++.|++..+.|.|+|.+|++|++.+.. +.+||||++++.|... .+.+|+++.++.+|.|||+|.|. ++..++...
T Consensus 6 ~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~~l~~~ 84 (128)
T cd08392 6 FALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEADLLSSR 84 (128)
T ss_pred EEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHHHhCCc
Confidence 5899999999999999999999988764 8899999999987653 36789999999999999999999 877777778
Q ss_pred eEEEEEEEccCCCCCceeEEEEEeccccccc---ccccceEecc
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLA---QTIEEWRELQ 118 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~---~~~~~w~~L~ 118 (128)
.|.+.||+++.++++++||++.|+|.++... .....||+|.
T Consensus 85 ~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 85 QLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred EEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9999999999999999999999999988543 4667899984
No 10
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.95 E-value=8.4e-27 Score=137.04 Aligned_cols=119 Identities=47% Similarity=0.789 Sum_probs=103.4
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l 79 (128)
|++.|.+..+.|+|+|++|++|+..+.. +.+||||++.+.+...++.+|+++.++.+|.|+|+|.|..++..++....|
T Consensus 7 ~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L 86 (128)
T cd08388 7 FSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSL 86 (128)
T ss_pred EEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEE
Confidence 5789999999999999999999987765 789999999998766667889999999999999999994365555555689
Q ss_pred EEEEEEccCCCCCceeEEEEEeccccccc--ccccceEeccc
Q psy12095 80 VFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 119 (128)
Q Consensus 80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~--~~~~~w~~L~~ 119 (128)
.+.||+++.++++++||++.++|.++... +....|.+|++
T Consensus 87 ~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 87 HFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred EEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 99999999999999999999999998554 66788999874
No 11
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.95 E-value=1.3e-27 Score=141.38 Aligned_cols=119 Identities=30% Similarity=0.466 Sum_probs=105.2
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|+|.|.+..+.|.|+|++|++|++.+..+.+|||+++.+.+++.. +.+|++++.+.+|.|||+|.|. ++..++....
T Consensus 6 ~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~l~~~~ 84 (136)
T cd08406 6 LSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIVLQDLS 84 (136)
T ss_pred EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHHhCCcE
Confidence 689999999999999999999999887889999999999876554 5689999999999999999999 8877777889
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
|.|+||+++.++++++||++.+... ..+...++|.++...++
T Consensus 85 l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~ 126 (136)
T cd08406 85 LRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLR 126 (136)
T ss_pred EEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCC
Confidence 9999999999999999999999765 35677889999877654
No 12
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.95 E-value=2.5e-27 Score=140.18 Aligned_cols=119 Identities=25% Similarity=0.342 Sum_probs=104.1
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCC--CCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMN 76 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~ 76 (128)
|+|+|.+..++|.|.|++|+||.+.+. .+.+|||+++++.+++.+ +.+|++.+.+.+|.|||.|.|. ++.+++..
T Consensus 6 ~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~~~~L~~ 84 (138)
T cd08407 6 LSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LPSELLAA 84 (138)
T ss_pred EEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CCHHHhCc
Confidence 689999999999999999999998873 244899999999876543 6789999999999999999999 98888878
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 77 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 77 ~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
..|.++|||++.++++++||++.+.+.. .|....+|.++...++
T Consensus 85 ~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~ 128 (138)
T cd08407 85 SSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPR 128 (138)
T ss_pred cEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCC
Confidence 8999999999999999999999999875 5667789999876544
No 13
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.95 E-value=1.8e-26 Score=135.38 Aligned_cols=119 Identities=48% Similarity=0.937 Sum_probs=104.5
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
|++.|.+..+.|+|+|.+|++|+..+..+..|||+++.+.+.+....+|+++.++.+|.|+|+|.|...+.+.+....|.
T Consensus 7 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~ 86 (125)
T cd08386 7 FSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLY 86 (125)
T ss_pred EEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEE
Confidence 58999999999999999999999888788899999999876666678899999999999999999973333334456799
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~ 119 (128)
++|||++..+++++||++.+++.++..+.....|++|.+
T Consensus 87 ~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 87 LQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred EEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 999999999999999999999999988888899999975
No 14
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.95 E-value=9.9e-27 Score=136.15 Aligned_cols=119 Identities=14% Similarity=0.286 Sum_probs=100.5
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCC-CCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTL-NPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~-~p~~~e~~~f~~~~~~~~~~~ 77 (128)
|+|+|.|..++|+|.|++|+||++......+|||+++++...+.+ +.+|++.+.+. +|.|||+|.|+ ++.+. ...
T Consensus 5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~-~~v 82 (135)
T cd08692 5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQE-HGI 82 (135)
T ss_pred EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchh-hee
Confidence 689999999999999999999998766677799999999766554 67899999885 69999999999 87654 356
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
.+.|++||++..+++++||++.+..+.. .+.+.++|.++...++
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr 126 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPE 126 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCC
Confidence 7899999999999999999999998764 4456789999866543
No 15
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.95 E-value=4.8e-26 Score=135.66 Aligned_cols=116 Identities=34% Similarity=0.541 Sum_probs=99.9
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~ 77 (128)
|+|.| ..+.|.|+|++|++|.+.+ ..+.+|||+++++.+++. .+.+|++++.+.+|.|||+|.|. +. +...
T Consensus 22 lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v~---l~~~ 95 (146)
T cd04028 22 LGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-VS---PTGK 95 (146)
T ss_pred EEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-Ec---CCCC
Confidence 46777 5789999999999998764 467899999999987664 37789999999999999999999 66 3457
Q ss_pred eEEEEEE-EccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 78 TLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 78 ~l~v~v~-~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
.|.++|| +++.+.++++||.+.|+|+.+..+.....||+|.+...
T Consensus 96 ~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 96 TLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 8999999 57788889999999999999977777889999998754
No 16
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.95 E-value=3.8e-26 Score=134.29 Aligned_cols=117 Identities=35% Similarity=0.660 Sum_probs=103.7
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|++.|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+.+ ....+|++++++.+|.|+|+|.|. +...++....
T Consensus 7 ~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~l~~~~ 85 (127)
T cd04030 7 LTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEELKRRT 85 (127)
T ss_pred EEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHHhcCCE
Confidence 5899999999999999999999998888899999999997654 347789999999999999999999 7766565678
Q ss_pred EEEEEEEccCC--CCCceeEEEEEecccccccccccceEecc
Q psy12095 79 LVFAIFDFDRF--SKHDQIGEVKVALCQIDLAQTIEEWRELQ 118 (128)
Q Consensus 79 l~v~v~~~~~~--~~~~~lG~~~~~l~~l~~~~~~~~w~~L~ 118 (128)
+.+.||+++.+ +++++||++.++|.++..+....+||+|.
T Consensus 86 l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 86 LDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 99999999875 68899999999999998888889999984
No 17
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.95 E-value=4.9e-26 Score=133.13 Aligned_cols=116 Identities=38% Similarity=0.674 Sum_probs=102.4
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~ 77 (128)
|++.|++..+.|.|+|.+|++|+..+ ..+.+|||+++.+.+... ...+|+++.++.+|.|+|+|.|. +...++...
T Consensus 5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~l~~~ 83 (123)
T cd08521 5 FSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQLETR 83 (123)
T ss_pred EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHHhCCC
Confidence 57899999999999999999999887 677899999999876543 46789999999999999999998 776555567
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L 117 (128)
.+.+.||+++..+++++||++.++|.++..+.....||+|
T Consensus 84 ~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 84 TLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 8999999999999999999999999999777778899986
No 18
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.94 E-value=7.4e-26 Score=132.39 Aligned_cols=118 Identities=41% Similarity=0.756 Sum_probs=104.4
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l 79 (128)
+++.|++..+.|.|+|.+|++|+..+ ..+.+|||+++.+.+.+....+|+++.++.+|.|+|.|.|. ++...+....|
T Consensus 5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~~~~l 83 (123)
T cd08390 5 FSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQRRTL 83 (123)
T ss_pred EEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhcccEE
Confidence 57999999999999999999999887 57789999999987766666789999999999999999998 76555445689
Q ss_pred EEEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095 80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119 (128)
Q Consensus 80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~ 119 (128)
.|.||+++..+++++||++.++|.++........|++|.+
T Consensus 84 ~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 84 RLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred EEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 9999999998889999999999999988888889999964
No 19
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.94 E-value=2.8e-25 Score=130.27 Aligned_cols=117 Identities=44% Similarity=0.680 Sum_probs=98.6
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|++.|++..+.|.|+|++|++|...+..+.+|||+++.+.+.. ....+|+++.++.+|.|+|+|.|..+...++....
T Consensus 7 ~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~ 86 (125)
T cd04031 7 IQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERT 86 (125)
T ss_pred EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCE
Confidence 5789999999999999999999988878889999999996543 24678999999999999999999833434444578
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~ 118 (128)
|.++|||++..+++++||++.++|.+. ......+||+|+
T Consensus 87 l~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 87 LEVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred EEEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 999999999999999999999999983 334457899985
No 20
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.94 E-value=9.9e-26 Score=133.50 Aligned_cols=120 Identities=33% Similarity=0.580 Sum_probs=103.3
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|+|.|.+..+.|.|+|++|++|++.+..+.+|||+++.+.+... .+.+|+++..+.+|.|+|+|.|. +...++....
T Consensus 4 ~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~~~~ 82 (133)
T cd08384 4 VSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLAKKT 82 (133)
T ss_pred EEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhCCCE
Confidence 58999999999999999999999988888899999999976442 36789999999999999999998 7665555578
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
|.++|||++..+++++||++.+++.. .++...+|+++...++.
T Consensus 83 l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 83 LEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDK 125 (133)
T ss_pred EEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCC
Confidence 99999999998899999999999975 45567899998776543
No 21
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.94 E-value=7.3e-26 Score=134.48 Aligned_cols=120 Identities=28% Similarity=0.434 Sum_probs=105.4
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|+|.|++..++|.|+|.+|++|++.+ .+.+|||+++.+.+.+. ...+|++..++.+|.|||.|.|. ++.+++....
T Consensus 6 ~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~~~~ 83 (137)
T cd08409 6 ISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSRQLDTAS 83 (137)
T ss_pred EEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHHHhCccE
Confidence 57999999999999999999999887 77799999999976543 35689999999999999999999 8877777788
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
|.++||+++..+++++||++.+.......+...++|.++...++
T Consensus 84 L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~ 127 (137)
T cd08409 84 LSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPK 127 (137)
T ss_pred EEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCC
Confidence 99999999999999999999999777777788899999877654
No 22
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.94 E-value=8.4e-26 Score=134.19 Aligned_cols=120 Identities=31% Similarity=0.542 Sum_probs=103.2
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK 77 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~ 77 (128)
++++|++..++|.|+|++|+||++.+..+.+|||+++.+.+... .+.+|++...+.+|.|||+|.|. ++.+++...
T Consensus 6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~l~~~ 84 (138)
T cd08408 6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQLSEV 84 (138)
T ss_pred EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHHhCcc
Confidence 58999999999999999999999988888899999999987443 25689999999999999999999 887777778
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
.+.+.||+.+..+++++||++.+++.... .....+|+++...++
T Consensus 85 ~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~ 128 (138)
T cd08408 85 TLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKG 128 (138)
T ss_pred EEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCC
Confidence 99999999999999999999999876543 234578999876544
No 23
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.93 E-value=5.2e-25 Score=133.96 Aligned_cols=119 Identities=39% Similarity=0.637 Sum_probs=100.0
Q ss_pred CeEEEec------------CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEE
Q psy12095 1 MKLEYDF------------NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVF 66 (128)
Q Consensus 1 ~~~~y~~------------~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f 66 (128)
|+|.|+| ..+.|.|+|++|++|+..+..+.+|||+++.+.+.. ...++|+++.++.+|.|+|+|.|
T Consensus 6 ~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f 85 (162)
T cd04020 6 VALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVY 85 (162)
T ss_pred EEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEE
Confidence 5789999 558999999999999998878899999999986643 34788999999999999999999
Q ss_pred cccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095 67 KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119 (128)
Q Consensus 67 ~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~ 119 (128)
..+...++....|.|.|||++.++++++||++.+++..+........|++|.+
T Consensus 86 ~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 86 DGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred ecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 73334445556899999999999999999999999999866555677777654
No 24
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.93 E-value=4.6e-25 Score=128.06 Aligned_cols=113 Identities=29% Similarity=0.443 Sum_probs=96.5
Q ss_pred eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l 79 (128)
.+.|+...+.|.|+|++|++|++.+ .+.+|||+++.+.++... +.+|+++..+.+|.|||+|.|. ++..+.. ..+
T Consensus 4 ~l~~~~~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~-~~l 80 (119)
T cd08685 4 KLSIEGQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDYQ-KRL 80 (119)
T ss_pred EEEEEEcCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHhC-CEE
Confidence 5677778999999999999999887 778999999999876543 6689999999999999999998 7655443 468
Q ss_pred EEEEEEccCCC-CCceeEEEEEecccccccccccceEec
Q psy12095 80 VFAIFDFDRFS-KHDQIGEVKVALCQIDLAQTIEEWREL 117 (128)
Q Consensus 80 ~v~v~~~~~~~-~~~~lG~~~~~l~~l~~~~~~~~w~~L 117 (128)
.++||+++... ++++||.+.|+|.++..+...++||.|
T Consensus 81 ~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 81 LVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred EEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 89999998765 478999999999999877778899976
No 25
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.93 E-value=3.2e-25 Score=131.76 Aligned_cols=119 Identities=37% Similarity=0.612 Sum_probs=102.9
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|+++|++..+.|.|+|++|++|+..+..+.+|||+++.+.+.+. ...+|++++++.+|.|+|+|.|. ++..+.....
T Consensus 6 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~~~~~~ 84 (136)
T cd08404 6 LSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEELEDIS 84 (136)
T ss_pred EEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHHhCCCE
Confidence 57999999999999999999999988888999999999865543 25678999999999999999999 7765555577
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+.|+|||++.++++++||.+.+++.. .+....+|++|.+.++
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~ 126 (136)
T cd08404 85 VEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPR 126 (136)
T ss_pred EEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCC
Confidence 99999999999999999999999988 4567789999976644
No 26
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.93 E-value=4.2e-25 Score=131.24 Aligned_cols=119 Identities=38% Similarity=0.706 Sum_probs=102.0
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|+++|++..+.|.|+|.+|++|...+..+.+|||+++.+.+.+. ...+|+++.++.+|.|+|+|.|. ++.+.+....
T Consensus 6 ~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~~~~~~ 84 (136)
T cd08405 6 LSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLERLRETT 84 (136)
T ss_pred EEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHHhCCCE
Confidence 58999999999999999999999888788999999999865432 35689999999999999999998 7655555568
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
|.|+|||++.++++++||++.+++... +...++|++|...++
T Consensus 85 l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~ 126 (136)
T cd08405 85 LIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR 126 (136)
T ss_pred EEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence 999999999999999999999999876 556788999877654
No 27
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.93 E-value=4.7e-25 Score=131.04 Aligned_cols=119 Identities=34% Similarity=0.692 Sum_probs=102.0
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|++.|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+.+. ...+|+++.++.+|.|+|+|.|. ++..++....
T Consensus 6 ~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~ 84 (136)
T cd08402 6 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQIQKVH 84 (136)
T ss_pred EEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHHhCCCE
Confidence 58999999999999999999999888888999999999865433 35678889999999999999998 7665555568
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
|.++|||++.++++++||.+.+++... +....+|+++...+.
T Consensus 85 l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~ 126 (136)
T cd08402 85 LIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASPR 126 (136)
T ss_pred EEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCCC
Confidence 999999999999999999999999764 556789999876653
No 28
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.93 E-value=4.8e-25 Score=130.68 Aligned_cols=120 Identities=38% Similarity=0.613 Sum_probs=101.7
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|++.|++..+.|+|+|++|++|+..+..+.+|||+++.+.+.+. ...+|+++.++.+|.|+|+|.|. ++.+......
T Consensus 5 ~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~~~~~ 83 (134)
T cd08403 5 FSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENVDNVS 83 (134)
T ss_pred EEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHhCCCE
Confidence 68999999999999999999999988888999999999865443 36788888899999999999998 7655555567
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
+.++|||++..+++++||.+.+++. ..+....+|+++...++.
T Consensus 84 l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 84 LIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRK 126 (134)
T ss_pred EEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCC
Confidence 9999999999999999999999876 345567899998766543
No 29
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.92 E-value=3.6e-24 Score=123.95 Aligned_cols=111 Identities=29% Similarity=0.389 Sum_probs=93.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeC----CCCCeeecceeecCCCCeecceEEEcccCCC-CCCCCeEEEEEEE
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLP----DKKKKFETKVHRKTLNPVFNETFVFKGVPYA-DAMNKTLVFAIFD 85 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~----~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~-~~~~~~l~v~v~~ 85 (128)
+|+|+|++|++|+..+ .+.+|||+++.+.. ...++.+|+++.++.+|.|||+|.|. +..+ .+....|.+.|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEE
Confidence 4899999999999876 48899999999842 22345789999999999999999999 6543 3445679999999
Q ss_pred ccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 86 FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 86 ~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
++..+++++||++.++|.++..++....|++|.+...+
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 99888899999999999999988888899999876543
No 30
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.92 E-value=2.9e-24 Score=127.30 Aligned_cols=119 Identities=39% Similarity=0.601 Sum_probs=103.3
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|+++|++..+.|.|.|.+|++|+..+..+..|||+++.+.+... ...+|+++..+.+|.|+++|.|. +....+....
T Consensus 5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l~~~~ 83 (134)
T cd00276 5 LSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQLEEVS 83 (134)
T ss_pred EEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHhCCcE
Confidence 57999999999999999999999888788899999999976543 35689999999999999999998 7665544578
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
|.|+||+.+..+++++||.+.+++++ .+...++|++|...++
T Consensus 84 l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~ 125 (134)
T cd00276 84 LVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR 125 (134)
T ss_pred EEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence 99999999988889999999999999 6677889999987754
No 31
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.92 E-value=7.4e-24 Score=124.38 Aligned_cols=106 Identities=30% Similarity=0.487 Sum_probs=90.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCC---CCCCCeEEEEEEEccC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYA---DAMNKTLVFAIFDFDR 88 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~---~~~~~~l~v~v~~~~~ 88 (128)
++|+|++|++|+..+..+.+|||+++.+ +..+.+|+++..+.+|.|||.|.|. ++.. +.....|.+.||+++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l---~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE---CCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccc
Confidence 5799999999998888889999999998 3456789999999999999999998 6542 2345689999999999
Q ss_pred CCCCceeEEEEEeccccc--ccccccceEeccccc
Q psy12095 89 FSKHDQIGEVKVALCQID--LAQTIEEWRELQSVE 121 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~--~~~~~~~w~~L~~~~ 121 (128)
+++|++||++.++|.++. .+.....||+|.+..
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~ 111 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP 111 (126)
T ss_pred cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCC
Confidence 989999999999999986 556678999998643
No 32
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.92 E-value=2.5e-24 Score=127.65 Aligned_cols=120 Identities=33% Similarity=0.550 Sum_probs=99.8
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|++.|.+..+.|+|+|++|++|...+..+.+|||+++.+.++.. ...+|++++++.+|.|+|+|.|. ++..+.....
T Consensus 5 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l~~~~ 83 (135)
T cd08410 5 LSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEELENVS 83 (135)
T ss_pred EEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHhCCCE
Confidence 58999999999999999999999988888999999999855432 35689999999999999999999 7766665567
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+.|+|||++..+++++||++.+...... +...++|+.|.+.++
T Consensus 84 l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~ 126 (135)
T cd08410 84 LVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQR 126 (135)
T ss_pred EEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCC
Confidence 9999999999999999999887653332 224689999877654
No 33
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.92 E-value=1.3e-23 Score=121.84 Aligned_cols=104 Identities=23% Similarity=0.408 Sum_probs=89.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeec-CCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~-~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
|.|+|+|++|++++..+ .+.+||||++.+ +.++.+|+++.. +.+|.|||+|.|. +... ...|.|+|||++.
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l---g~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~ 73 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV---GHAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERA 73 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE---CCEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCC
Confidence 68999999999887766 689999999999 456678999875 7899999999998 6532 2579999999999
Q ss_pred CCCCceeEEEEEecc-cccccccccceEeccccc
Q psy12095 89 FSKHDQIGEVKVALC-QIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~-~l~~~~~~~~w~~L~~~~ 121 (128)
+++|++||.+.+++. .+..+...+.|++|.+..
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~ 107 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSGKQ 107 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcCcc
Confidence 999999999999996 577787789999998754
No 34
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.90 E-value=8.6e-23 Score=119.14 Aligned_cols=104 Identities=24% Similarity=0.328 Sum_probs=89.8
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095 11 SLSVTVIQAED---LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD 87 (128)
Q Consensus 11 ~l~v~i~~a~~---l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~ 87 (128)
.|.|+|++|++ |...+..+.+|||+.+.+ +.++.+|+++..+.+|.|||+|.|. +... ...|.|.|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~---g~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY---GPKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEE---CCEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEECC
Confidence 37899999999 777787899999999998 4567789999999999999999998 5432 247999999998
Q ss_pred CCC------CCceeEEEEEecccccccccccceEeccccc
Q psy12095 88 RFS------KHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 88 ~~~------~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
..+ .|++||++.++|..+..+.....||+|.+..
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 113 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN 113 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC
Confidence 863 8999999999999998888889999998643
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.90 E-value=8.3e-23 Score=122.34 Aligned_cols=109 Identities=37% Similarity=0.504 Sum_probs=90.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccC-------------CCCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVP-------------YADAM 75 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~-------------~~~~~ 75 (128)
.|+|+|++|++|.. ..+.+||||++.+.+... ...+|+++..+.+|.|||+|.|. +. ..+..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCccccc
Confidence 48899999999988 467899999999965432 46789999999999999999998 53 23333
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEeccccccc-ccccceEecccccC
Q psy12095 76 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSVEG 122 (128)
Q Consensus 76 ~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~-~~~~~w~~L~~~~~ 122 (128)
...+.|.||+++..++++|||++.|+|..+..+ .....||+|.+.+.
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 467999999999888999999999999999876 56789999988753
No 36
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.90 E-value=9e-23 Score=118.54 Aligned_cols=111 Identities=25% Similarity=0.368 Sum_probs=92.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
|.|+|+|.+|++|+..+..+.+|||+++.+. ....+|+++. .+.+|.|+|.|.|. +... ....|.++|||++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCC
Confidence 5799999999999988888899999999983 3556788775 57899999999998 6543 24679999999988
Q ss_pred CCCCceeEEEEEecccccccccccceEecccccCCCCcC
Q psy12095 89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQL 127 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~ 127 (128)
.+ +++||++.+++.++..+....+|++|.+.++..|+|
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i 112 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEV 112 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEE
Confidence 76 899999999999987776778999998876666654
No 37
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=6.8e-23 Score=120.46 Aligned_cols=107 Identities=27% Similarity=0.380 Sum_probs=89.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCC-CCCCCCeEEEEEEEccCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY-ADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~-~~~~~~~l~v~v~~~~~~ 89 (128)
.|+|+|++|++|.+.+..+.+|||+++.+. .+..+|+++.++.+|.|||.|.|. +.. .......|.+.||+++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCC
Confidence 489999999999988877889999999984 356789999999999999999998 542 223346799999999887
Q ss_pred C-CCceeEEEEEeccccc-ccccccceEeccccc
Q psy12095 90 S-KHDQIGEVKVALCQID-LAQTIEEWRELQSVE 121 (128)
Q Consensus 90 ~-~~~~lG~~~~~l~~l~-~~~~~~~w~~L~~~~ 121 (128)
. .+++||++.+++.++. .+....+||+|...+
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~ 110 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG 110 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC
Confidence 6 8899999999999986 566678999998753
No 38
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.90 E-value=1.5e-22 Score=117.72 Aligned_cols=107 Identities=27% Similarity=0.455 Sum_probs=92.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|+|+|++|++|+..+..+.+|||+++.+.+.+..+.+|+++.++.+|.|+|+|.|. +... ....+.|.|||++.. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-M 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-C
Confidence 78999999999988877889999999985444567789999999999999999998 6543 235799999999988 8
Q ss_pred CceeEEEEEecccccccccccceEecccccC
Q psy12095 92 HDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+++||++.+++..+..+.....|++|.+.+.
T Consensus 78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~ 108 (119)
T cd04036 78 DDHLGTVLFDVSKLKLGEKVRVTFSLNPQGK 108 (119)
T ss_pred CcccEEEEEEHHHCCCCCcEEEEEECCCCCC
Confidence 8999999999999988888899999987643
No 39
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.90 E-value=4.9e-22 Score=116.21 Aligned_cols=116 Identities=41% Similarity=0.577 Sum_probs=96.2
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
+++.|.+..+.|+|+|.+|++|+..+..+.+|||+++.+.+.. ....+|+++..+.+|.|++.|.|..+...+.....
T Consensus 6 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~ 85 (123)
T cd04035 6 FTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKT 85 (123)
T ss_pred EEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCE
Confidence 4789999999999999999999988777889999999986543 34688999999999999999999524433444568
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L 117 (128)
+.+++||++.. .+++||.+.++|+++..+.....|++|
T Consensus 86 l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 86 LRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred EEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 99999999988 889999999999999776665556543
No 40
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.90 E-value=3.1e-22 Score=115.94 Aligned_cols=104 Identities=31% Similarity=0.469 Sum_probs=91.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
.++|+|.+|++|+..+..+.+|||+++.+ +....+|+++..+.+|.|+|.|.|. +... ....+.+.|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEE---CCEeEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCC
Confidence 37899999999999887888999999998 3456789999999999999999998 5432 2468999999999998
Q ss_pred CCceeEEEEEecccccccccccceEecccc
Q psy12095 91 KHDQIGEVKVALCQIDLAQTIEEWRELQSV 120 (128)
Q Consensus 91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~ 120 (128)
++++||++.++|+++..+.....|++|.+.
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQTHSLELELEDG 104 (116)
T ss_pred CCCeEEEEEEeHHHCCCCCceEEEEEccCC
Confidence 999999999999999888888899999876
No 41
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.89 E-value=1.8e-22 Score=115.89 Aligned_cols=104 Identities=33% Similarity=0.570 Sum_probs=89.1
Q ss_pred EEEEEEEecCCCCCCC-CCCCCCeEEEEEeCCCCCeeecceeecCCCCee-cceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 12 LSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF-NETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~-~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
|.|+|++|++|+..+. .+.+|||+++.+. ....+|+++.++.+|.| +|.|.|. ++..++....|.|+|||++..
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCC
Confidence 5799999999998763 6788999999984 36788999999999999 9999998 765544456899999999999
Q ss_pred CCCceeEEEEEecccccc---cccccceEeccc
Q psy12095 90 SKHDQIGEVKVALCQIDL---AQTIEEWRELQS 119 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~---~~~~~~w~~L~~ 119 (128)
+++++||++.+++.++.. +...+.||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999999866 345788999975
No 42
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.89 E-value=6.8e-22 Score=115.62 Aligned_cols=105 Identities=32% Similarity=0.548 Sum_probs=90.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
+|+|+|++|++|...+..+.+|||+.+.+ +....+|+++..+.+|.|+|+|.|. +... ....|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~~~v~d~~~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFE-LMEG--ADSPLSVEVWDWDLVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE---CCEEEeceeecCCCCCccCcEEEEE-cCCC--CCCEEEEEEEECCCCC
Confidence 58999999999998887788999999998 3456789999999999999999998 5432 2467999999999999
Q ss_pred CCceeEEEEEecccccccccccceEeccccc
Q psy12095 91 KHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
.+++||++.++|.++..+.....|++|.+..
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~ 105 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDP 105 (123)
T ss_pred CCcEeEEEEEEHHHcccCCCCCCEEECCCCC
Confidence 9999999999999997777778999998754
No 43
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.89 E-value=4.2e-22 Score=116.17 Aligned_cols=105 Identities=32% Similarity=0.514 Sum_probs=91.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
+|+|+|.+|++|+..+..+.+|||+++.+. +....+|+++..+.+|.|+|.|.|. +.. . ...+.++|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~-v~~--~-~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLP-IED--V-TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEE-ecC--C-CCeEEEEEEeCCCCC
Confidence 489999999999988888899999999983 3356789999999999999999998 542 2 357999999999998
Q ss_pred CCceeEEEEEecccccccccccceEeccccc
Q psy12095 91 KHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
++++||++.+++..+..+...+.|++|.+..
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~ 105 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN 105 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCC
Confidence 9999999999999998888889999998665
No 44
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.89 E-value=1.5e-21 Score=115.36 Aligned_cols=117 Identities=37% Similarity=0.627 Sum_probs=96.4
Q ss_pred eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l 79 (128)
++.|+. +.|+|+|++|++|+..+..+..|||+++.+.+.+ ....+|+++.++.+|.|+++|.|. +...+ ....+
T Consensus 7 ~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~-~~~~l 82 (131)
T cd04026 7 KISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD-KDRRL 82 (131)
T ss_pred EEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh-cCCEE
Confidence 455555 9999999999999987777889999999986533 346789999999999999999998 55432 23579
Q ss_pred EEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
.+.||+++..+.+++||++.++|.++... ....||+|.+....
T Consensus 83 ~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~ 125 (131)
T cd04026 83 SIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEG 125 (131)
T ss_pred EEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccc
Confidence 99999999888999999999999998654 67889999876543
No 45
>KOG1028|consensus
Probab=99.88 E-value=6.2e-22 Score=135.76 Aligned_cols=119 Identities=63% Similarity=1.033 Sum_probs=110.7
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
|++.|+.....|.|+|.+|++|+..+..+.+|||+++++.|+...+.+|++.+++++|.|+|+|.|. ++..++....+.
T Consensus 158 fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~ 236 (421)
T KOG1028|consen 158 FSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLH 236 (421)
T ss_pred EEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCHHHhccCEEE
Confidence 5899999999999999999999998866789999999999998888999999999999999999999 888888889999
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~ 120 (128)
+.||+.+.+++++++|.+.++|...........|.+|.+.
T Consensus 237 l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~ 276 (421)
T KOG1028|consen 237 LSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS 276 (421)
T ss_pred EEEEecCCcccccEEEEEEecCccccccccceeeeccccc
Confidence 9999999999999999999999988777667789999886
No 46
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.88 E-value=1.7e-21 Score=115.31 Aligned_cols=107 Identities=37% Similarity=0.573 Sum_probs=91.5
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC----CCeeecceeecCCCCeecceEEEcccCCCC--C
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKGVPYAD--A 74 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~----~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~--~ 74 (128)
++++|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+.. ....+|+++.++.+|.|+|+|.|. +...+ .
T Consensus 7 ~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~~~~ 85 (133)
T cd04009 7 VKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VPPEQCSV 85 (133)
T ss_pred EEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-echhhccc
Confidence 4789999999999999999999988777889999999987543 346789999999999999999998 65422 2
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEeccccccc
Q psy12095 75 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 108 (128)
Q Consensus 75 ~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~ 108 (128)
....|.+.|||++..+++++||++.++|+++...
T Consensus 86 ~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 86 EGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred CCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 3467999999999999999999999999988543
No 47
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.88 E-value=6.7e-22 Score=113.67 Aligned_cols=105 Identities=34% Similarity=0.582 Sum_probs=88.2
Q ss_pred CEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCC-CCCeEEEEEEEcc
Q psy12095 10 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADA-MNKTLVFAIFDFD 87 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~~~~ 87 (128)
|.|+|+|.+|++|+..+.. +.+|||+++.+.+.+....+|+++.++.+|.|+|.|.|. +...+. ....|.++|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCC
Confidence 5799999999999988876 889999999986555556789999999999999999997 444322 2357999999999
Q ss_pred CCCCCceeEEEEEecccccccccccceEecc
Q psy12095 88 RFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118 (128)
Q Consensus 88 ~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~ 118 (128)
.++++++||++.+++.++. ....|+.+.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 80 RFTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred CCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 9999999999999999985 345788764
No 48
>KOG0696|consensus
Probab=99.88 E-value=4.9e-23 Score=138.38 Aligned_cols=117 Identities=38% Similarity=0.671 Sum_probs=102.4
Q ss_pred EEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 3 ~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
|+...+...|+|.|.+|+||.+++.++.+|||+++.+.|+.. .+++|++++.+++|.|||+|.|. +.+.+. +..|.
T Consensus 173 l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~-Lkp~Dk-drRls 250 (683)
T KOG0696|consen 173 LEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFK-LKPSDK-DRRLS 250 (683)
T ss_pred EEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEe-cccccc-cceeE
Confidence 566778999999999999999999999999999999987654 36789999999999999999999 666653 57899
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
|+|||++..++++|+|...+.++++.. ...++||.|+....
T Consensus 251 iEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsqeE 291 (683)
T KOG0696|consen 251 IEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQEE 291 (683)
T ss_pred EEEecccccccccccceecccHHHHhh-cchhhHHHHhhhhc
Confidence 999999999999999999999999844 46789999877543
No 49
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.88 E-value=4.1e-21 Score=111.87 Aligned_cols=104 Identities=30% Similarity=0.488 Sum_probs=88.7
Q ss_pred EEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 12 LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 12 l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
|+|+|.+|++|++.+ ..+.+||||.+.+. +....+|+++..+.+|.|+|+|.|. ++.. ...+.+.||+++.++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCC
Confidence 679999999999863 35688999999982 3345789999999999999999999 6632 358999999999999
Q ss_pred CCceeEEEEEecccccccccccceEeccccc
Q psy12095 91 KHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
+++++|.+.++++++..+...+.|++|.+..
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 106 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD 106 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccC
Confidence 9999999999999998777788999998753
No 50
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.87 E-value=3.5e-21 Score=109.68 Aligned_cols=101 Identities=26% Similarity=0.352 Sum_probs=85.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|.|+|.+|++|+..+..+.+|||+.+.+. .+..+|+++..+.+|.|+|.|.|. +... ....+.|.||+++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~v~v~d~~~--- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFL-VRNP--ENQELEIEVKDDKT--- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEE-eCCC--CCCEEEEEEEECCC---
Confidence 78999999999988878899999999993 367889999999999999999999 6542 23579999999886
Q ss_pred CceeEEEEEecccccccc--cccceEeccccc
Q psy12095 92 HDQIGEVKVALCQIDLAQ--TIEEWRELQSVE 121 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~~--~~~~w~~L~~~~ 121 (128)
+++||++.++|.++.... ..+.||+|.+++
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 789999999999886543 567999998764
No 51
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.87 E-value=6.9e-21 Score=112.03 Aligned_cols=106 Identities=34% Similarity=0.524 Sum_probs=89.7
Q ss_pred CEEEEEEEEecCCCCCCC--CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095 10 NSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD 87 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~ 87 (128)
|.|+|+|.+|++|+..+. .+.+|||+.+.+ +....+|+++..+.+|.|++.|.|. +.. .....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~---~~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE---CCEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECC
Confidence 579999999999998887 788999999988 3456789999999999999999998 543 23468999999999
Q ss_pred CCCCCceeEEEEEecccccc---cccccceEeccccc
Q psy12095 88 RFSKHDQIGEVKVALCQIDL---AQTIEEWRELQSVE 121 (128)
Q Consensus 88 ~~~~~~~lG~~~~~l~~l~~---~~~~~~w~~L~~~~ 121 (128)
..+++++||++.+++.++.. ......||+|.+..
T Consensus 75 ~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~ 111 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR 111 (128)
T ss_pred CCCCCCcceEEEEEHHHhhcccccCccceeEEccCcc
Confidence 98889999999999999863 33457899998773
No 52
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=4.9e-21 Score=115.18 Aligned_cols=105 Identities=25% Similarity=0.367 Sum_probs=87.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeec-CCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~-~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
.|+|+|.+|++|++.+..+.+|||+++.+. .+..+|++... +.+|.|||.|.|. +.. .....+.+.||+++..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~-v~~--~~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFV-AAE--PFEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEE-ecC--ccCCeEEEEEEEecCC
Confidence 378999999999999888999999999993 46778888765 6999999999998 543 2235799999999988
Q ss_pred CCCceeEEEEEeccccccc----ccccceEeccccc
Q psy12095 90 SKHDQIGEVKVALCQIDLA----QTIEEWRELQSVE 121 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~~----~~~~~w~~L~~~~ 121 (128)
+++++||++.++|.++..+ ...++||+|.+..
T Consensus 75 ~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 75 NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 8899999999999998543 3457999998765
No 53
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.87 E-value=8.4e-21 Score=112.72 Aligned_cols=108 Identities=34% Similarity=0.504 Sum_probs=91.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCC-CCCeeecceeecCCCCeecceEEEcccCCC-------------CCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKGVPYA-------------DAMNK 77 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~-------------~~~~~ 77 (128)
|+|+|++|++|+.. ..+..|||+++.+... .....+|+++..+.+|.|+|.|.|. +... ++...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEE-cccccccccccccccccccccc
Confidence 57899999999988 6788999999998632 2456889999999999999999998 5432 22456
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
.+.|+|||.+..+++++||++.+++.++........|++|.+..
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 89999999999889999999999999987777788999998876
No 54
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=4.4e-21 Score=111.75 Aligned_cols=100 Identities=32% Similarity=0.444 Sum_probs=83.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
.|+|+|++|++|+.. .+|||+.+.+. ....+|+++.++.+|.|+|+|.|. +. ......+.+.|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA- 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC-
Confidence 378999999999877 68999999983 356789999999999999999998 43 22446899999999977
Q ss_pred CCceeEEEEEecccccccc-----cccceEeccccc
Q psy12095 91 KHDQIGEVKVALCQIDLAQ-----TIEEWRELQSVE 121 (128)
Q Consensus 91 ~~~~lG~~~~~l~~l~~~~-----~~~~w~~L~~~~ 121 (128)
++++||++.++|+++.... ...+||+|.+.+
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 7889999999999985432 346899998876
No 55
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.87 E-value=7.1e-21 Score=111.71 Aligned_cols=103 Identities=24% Similarity=0.421 Sum_probs=88.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|.|+|++|++|+. ..+.+|||+.+.+. ......+|+++.++.+|.|+|.|.|. +... ...+.|.|||++..++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCC
Confidence 5789999999987 56889999999983 22346789999999999999999998 6432 3579999999999989
Q ss_pred CceeEEEEEecccccccccccceEeccccc
Q psy12095 92 HDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
+++||++.+++.++..+....+|++|.+..
T Consensus 74 ~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 103 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPSGRQIFPLQGRP 103 (126)
T ss_pred CceEEEEEEeHHHhccCCceeEEEEecCCC
Confidence 999999999999998887788999998763
No 56
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.86 E-value=9.2e-21 Score=113.91 Aligned_cols=105 Identities=37% Similarity=0.551 Sum_probs=88.2
Q ss_pred EecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--------------------------CeeecceeecCCCC
Q psy12095 5 YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--------------------------KKFETKVHRKTLNP 58 (128)
Q Consensus 5 y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--------------------------~~~~t~~~~~~~~p 58 (128)
+.|+.+.|.|+|++|++|.+.+..+.+|||+++.+.+... ...+|.++..+.+|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 5678899999999999999998889999999999854321 23678889999999
Q ss_pred eecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117 (128)
Q Consensus 59 ~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L 117 (128)
.|+|+|.|. +.. .....|.|+|||++ +++||++.++++++. +...++||+|
T Consensus 103 ~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred ccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 999999998 542 23468999999987 789999999999987 4457899987
No 57
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.86 E-value=1.6e-20 Score=111.42 Aligned_cols=116 Identities=29% Similarity=0.462 Sum_probs=90.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCC----CC--CCCeEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYA----DA--MNKTLVFAI 83 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~----~~--~~~~l~v~v 83 (128)
.+|+|.|.+|++|++.+..+.+|||+++.+. ....+|+++.++.+|.|+|.|.|...... +. ....+.++|
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 4789999999999998888899999999983 45778999999999999999998722211 11 124689999
Q ss_pred EEccCCCCCceeEEEEE-eccccc---ccccccceEecccccCCCCcCC
Q psy12095 84 FDFDRFSKHDQIGEVKV-ALCQID---LAQTIEEWRELQSVEGEGGQLL 128 (128)
Q Consensus 84 ~~~~~~~~~~~lG~~~~-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~ 128 (128)
||++..++|++||++.+ ++..+. .+....+|++|.......|+|+
T Consensus 78 ~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil 126 (135)
T cd04017 78 FDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELL 126 (135)
T ss_pred EeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhhee
Confidence 99999999999999986 333332 2355679999987766666654
No 58
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.86 E-value=3.5e-20 Score=108.77 Aligned_cols=109 Identities=27% Similarity=0.405 Sum_probs=89.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
..++|+|.+|++|+..+..+.+|||+.+.+........+|+++.++.+|.|+|+|.|. +... ....|.|+||+++..
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~ 77 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFV 77 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCC
Confidence 3689999999999988888899999999874433446789999999999999999998 5543 246799999999998
Q ss_pred CCCceeEEEEEecccccc---cccccceEeccccc
Q psy12095 90 SKHDQIGEVKVALCQIDL---AQTIEEWRELQSVE 121 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~---~~~~~~w~~L~~~~ 121 (128)
+++++||++.++|..+.. +.....|++|.+.+
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g 112 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQG 112 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCC
Confidence 889999999999987543 34566899998754
No 59
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.86 E-value=2.3e-20 Score=109.29 Aligned_cols=108 Identities=31% Similarity=0.425 Sum_probs=91.1
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCC-CCCeEEEEEEEcc
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADA-MNKTLVFAIFDFD 87 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~~~~ 87 (128)
|.|.|+|.+|++|+..+..+..|||+++.+. ....+|++.. .+.+|.|++.|.|. +..... ....|.|+|||++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECc
Confidence 5799999999999988877889999999983 3456777776 48999999999998 654321 2357999999999
Q ss_pred CCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095 88 RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 88 ~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
.+.++++||.+.+++.++..+...+.|+.|.+.+
T Consensus 77 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 77 NFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred cCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 9889999999999999998888889999998865
No 60
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.86 E-value=2.6e-20 Score=108.58 Aligned_cols=104 Identities=36% Similarity=0.539 Sum_probs=88.2
Q ss_pred CEEEEEEEEecCCCCCCC------CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALDM------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI 83 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~------~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v 83 (128)
|.|+|+|.+|++|+..+. .+.+|||+.+.+. ....+|+++.++.+|.|+|.|.|. +... ....+.+.|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEE
Confidence 568999999999997764 3578999999983 367889999999999999999988 5432 346899999
Q ss_pred EEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095 84 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120 (128)
Q Consensus 84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~ 120 (128)
||++.. ++++||.+.+++.++..+...+.|++|.+.
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 110 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV 110 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC
Confidence 999988 889999999999998877777899999875
No 61
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.86 E-value=4.6e-20 Score=108.20 Aligned_cols=103 Identities=32% Similarity=0.493 Sum_probs=85.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
..|+|+|++|++|++.+ .+||||.+.+. +.+..+|++. .+.+|.|||.|.|. +...+. ..+.|.+||++..
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---VPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKR 74 (126)
T ss_pred eEEEEEEEEeeCCCCCC---CCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCC
Confidence 36999999999998753 68999999993 3344677764 57899999999998 443322 4688999999999
Q ss_pred CCCceeEEEEEecccccccccccceEeccccc
Q psy12095 90 SKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
+++++||.+.++|+.+..+...+.|++|.+..
T Consensus 75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~ 106 (126)
T cd08400 75 SKDSEIAEVTVQLSKLQNGQETDEWYPLSSAS 106 (126)
T ss_pred CCCCeEEEEEEEHhHccCCCcccEeEEcccCC
Confidence 99999999999999998888889999998864
No 62
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.86 E-value=1.6e-20 Score=111.33 Aligned_cols=95 Identities=31% Similarity=0.478 Sum_probs=82.8
Q ss_pred cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEc
Q psy12095 7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF 86 (128)
Q Consensus 7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~ 86 (128)
...|.|+|+|.+|++|...+..+.+|||+++.+ +....+|+++.++.+|.|+++|.|. +.. .....+.++|||+
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~---~~~~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~ 85 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM---GSQEHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDR 85 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE---CCEeeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEEC
Confidence 456799999999999998888889999999998 4557889999999999999999998 542 2346799999999
Q ss_pred cCCCCCceeEEEEEecccccc
Q psy12095 87 DRFSKHDQIGEVKVALCQIDL 107 (128)
Q Consensus 87 ~~~~~~~~lG~~~~~l~~l~~ 107 (128)
+..++|++||++.+++.++..
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhcc
Confidence 999999999999999998864
No 63
>KOG1030|consensus
Probab=99.86 E-value=4.2e-21 Score=114.37 Aligned_cols=97 Identities=36% Similarity=0.540 Sum_probs=85.4
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
-|.|+|.|.+|.+|..++..+++|||+.+.+ +.++.+|+++..+.||.||+.|.|. +... ...+.+.|||++.
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l---g~q~lkT~~v~~n~NPeWNe~ltf~-v~d~---~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL---GNQKLKTRVVYKNLNPEWNEELTFT-VKDP---NTPLKVTVYDKDT 77 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEE---CCeeeeeeeecCCCCCcccceEEEE-ecCC---CceEEEEEEeCCC
Confidence 4789999999999999997799999999999 6778889999999999999999998 6533 3689999999999
Q ss_pred CCCCceeEEEEEeccccccccccc
Q psy12095 89 FSKHDQIGEVKVALCQIDLAQTIE 112 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~~~~~~ 112 (128)
++.|+++|.++|+|..+.......
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred CCcccccceeeeccHHHHHHhhhh
Confidence 999999999999998886654433
No 64
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=2.3e-20 Score=108.06 Aligned_cols=99 Identities=24% Similarity=0.327 Sum_probs=80.8
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
+.|.|+|.+|++|...+ ..+||+.+.+ +.++.+|++.+. .+|.|||.|.|. +. +. ...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~---g~~k~kT~v~~~-~nP~WnE~F~F~-~~--~~-~~~L~v~V~dkd~~ 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV---QNVKSTTIAVRG-SQPCWEQDFMFE-IN--RL-DLGLVIELWNKGLI 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE---CCEEeEeeECCC-CCCceeeEEEEE-Ec--CC-CCEEEEEEEeCCCc
Confidence 47899999999997654 4589999999 446777888877 499999999998 53 22 34599999999865
Q ss_pred CCCceeEEEEEecccccccccc--cceEecccc
Q psy12095 90 SKHDQIGEVKVALCQIDLAQTI--EEWRELQSV 120 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~~~~~--~~w~~L~~~ 120 (128)
.|+++|++.|+|.++..+... .+||+|.+.
T Consensus 71 -~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 -WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred -CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 899999999999998765444 689999875
No 65
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.85 E-value=3.2e-20 Score=108.18 Aligned_cols=104 Identities=32% Similarity=0.551 Sum_probs=87.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|.|+|++|++|.+.+..+.+|||+.+.+. +....+|+++..+.+|.|+|.|.|. +... ...+.+.+|+++.+++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCC
Confidence 78999999999998888899999999983 3335689999999999999999998 5432 2579999999999999
Q ss_pred CceeEEEEEeccccccc-ccccceEeccccc
Q psy12095 92 HDQIGEVKVALCQIDLA-QTIEEWRELQSVE 121 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~-~~~~~w~~L~~~~ 121 (128)
++++|++.++++.+..+ ...+.|++|.+..
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~ 106 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVD 106 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeC
Confidence 99999999998887643 3467899998753
No 66
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.85 E-value=1.7e-20 Score=107.84 Aligned_cols=105 Identities=27% Similarity=0.397 Sum_probs=86.1
Q ss_pred cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCC--CCCCCCeEEEEEE
Q psy12095 7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY--ADAMNKTLVFAIF 84 (128)
Q Consensus 7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~--~~~~~~~l~v~v~ 84 (128)
+....|+|+|.+|++|. .+.+|||+++.+. .++.+|+++..+.+|.|+|+|.|. +.. .++....|.+.||
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVY 72 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEE
Confidence 34678999999999998 4578999999994 356689999999999999999998 432 2233467999999
Q ss_pred EccCCCCCceeEEEEEeccccccccc---ccceEeccc
Q psy12095 85 DFDRFSKHDQIGEVKVALCQIDLAQT---IEEWRELQS 119 (128)
Q Consensus 85 ~~~~~~~~~~lG~~~~~l~~l~~~~~---~~~w~~L~~ 119 (128)
|++.++++++||.+.++|..+..+.. ...|++|.+
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 99998889999999999999866533 467999975
No 67
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.85 E-value=2.6e-20 Score=106.39 Aligned_cols=96 Identities=29% Similarity=0.435 Sum_probs=80.3
Q ss_pred CEEEEEEEEecCCCCCCCC----CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALDMG----GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD 85 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~----~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~ 85 (128)
|.|.|+|.+|++|++.+.. ..+|||+.+.+ +.+.++|++++.+.+|.|+|.|.|. +...+ ....|.+.|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~---~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~-~~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFE-VYPHE-KNFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE---CCEeEeeeeecCCCCCcccceEEEE-EeCcc-CCCEEEEEEEE
Confidence 5799999999999986532 34799999998 4567789999999999999999998 65433 23579999999
Q ss_pred ccCCCCCceeEEEEEeccccccccc
Q psy12095 86 FDRFSKHDQIGEVKVALCQIDLAQT 110 (128)
Q Consensus 86 ~~~~~~~~~lG~~~~~l~~l~~~~~ 110 (128)
++..++|++||++.++|..+..+..
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHhhCC
Confidence 9999999999999999999866543
No 68
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.85 E-value=4.4e-20 Score=107.38 Aligned_cols=107 Identities=25% Similarity=0.373 Sum_probs=90.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
|.|+|+|.+|++|+..+..+.+|||+++.+. +....+|.++..+.+|.|+|.|.|. +... ...|.|+||+++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCC
Confidence 5789999999999998878899999999983 2345778888899999999999887 5432 25799999999999
Q ss_pred CCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 90 SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
+++++||++.+++.++..+ ..+.||.|.+.++.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~ 107 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEE 107 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcc
Confidence 9999999999999998665 67899999887643
No 69
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.85 E-value=5.9e-20 Score=106.21 Aligned_cols=108 Identities=41% Similarity=0.629 Sum_probs=92.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|+|+|++|++|+..+..+.+|||+++.+. +....+|+++.++.+|.|+++|.|. +... ....+.+++|+++..++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCC
Confidence 57899999999988777889999999983 3345789999999999999999998 5432 34679999999999889
Q ss_pred CceeEEEEEecccccccccccceEecccccCCC
Q psy12095 92 HDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 124 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~ 124 (128)
+++||++.+++.++..+.....|++|.+.++..
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~ 108 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQGGGK 108 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCCCCcc
Confidence 999999999999998887788999998876554
No 70
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.85 E-value=8e-20 Score=110.87 Aligned_cols=105 Identities=28% Similarity=0.418 Sum_probs=87.1
Q ss_pred CCEEEEEEEEecCCCCCC------------------------------CCCCCCCeEEEEEeCCCCCeeecceeecCCCC
Q psy12095 9 ANSLSVTVIQAEDLPALD------------------------------MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP 58 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~------------------------------~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p 58 (128)
.|.|.|+|.+|++|+.++ ..+.+|||+.+.+. +.+..+|+++.++.+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence 478999999999999875 24567999999983 2345689999999999
Q ss_pred eecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120 (128)
Q Consensus 59 ~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~ 120 (128)
.|||+|.|. +... ...|.+.|||++.++ +++||.+.++++++..+...++|++|.+.
T Consensus 84 ~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 140 (158)
T cd04015 84 VWNESFHIY-CAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS 140 (158)
T ss_pred ccceEEEEE-ccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence 999999998 5422 257999999998875 57999999999999888888999999764
No 71
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.85 E-value=8.5e-20 Score=106.69 Aligned_cols=105 Identities=24% Similarity=0.363 Sum_probs=87.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
.|+|+|.+|++|...+..+.+|||+++.+. +....+|+++..+.+|.|+|.|.|. +.. ...|.++|||++..+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCC
Confidence 378999999999988888899999999983 3567789999999999999999998 643 468999999999876
Q ss_pred C--CceeEEEEEecccccccc-cccceEecccccC
Q psy12095 91 K--HDQIGEVKVALCQIDLAQ-TIEEWRELQSVEG 122 (128)
Q Consensus 91 ~--~~~lG~~~~~l~~l~~~~-~~~~w~~L~~~~~ 122 (128)
. +++||++.+++.++.... ....|++|.+...
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~ 108 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK 108 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCC
Confidence 5 579999999999985443 3467999966553
No 72
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.85 E-value=1.2e-19 Score=105.47 Aligned_cols=103 Identities=32% Similarity=0.545 Sum_probs=87.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
|.|+|+|.+|++|+..+..+.+|||+.+.+. ....+|+++.++.+|.|+++|.|. +.. . ...+.++|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCC
Confidence 5799999999999988878889999999983 345689999999999999999998 542 1 35799999999988
Q ss_pred CCCceeEEEEEecccccccccccceEeccccc
Q psy12095 90 SKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
++++++|++.+++.++..+ ...|+.|.+..
T Consensus 74 ~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~ 103 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNG--ERKWYALKDKK 103 (119)
T ss_pred CCCceeeEEEEEHHHCCCC--CceEEECcccC
Confidence 8899999999999988654 36899997654
No 73
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=7e-20 Score=109.97 Aligned_cols=109 Identities=29% Similarity=0.451 Sum_probs=87.4
Q ss_pred EEEEEEEEecCCCCCCCC--------------CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCC
Q psy12095 11 SLSVTVIQAEDLPALDMG--------------GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMN 76 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~--------------~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~ 76 (128)
.|.|+|.+|++|+.++.. +.+|||+++.+. ....+|+++.++.+|.|||+|.|. +..... .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~-~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL-C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEE-eeCCCc-C
Confidence 378999999999987643 368999999983 345689999999999999999998 433322 3
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEeccccccccc-------ccceEecccccCCC
Q psy12095 77 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-------IEEWRELQSVEGEG 124 (128)
Q Consensus 77 ~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~-------~~~w~~L~~~~~~~ 124 (128)
..|.++|||++..++|+++|.+.+++.++..... ...|+.|.+.+...
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 5799999999999999999999999998755432 35899998776543
No 74
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=9.2e-20 Score=107.93 Aligned_cols=106 Identities=35% Similarity=0.520 Sum_probs=87.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC----CCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEc
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF 86 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~----~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~ 86 (128)
.|+|+|++|++|+..+..+.+|||+++.+.+.. ....+|+++.++.+|.|+++|.|. +... ...+.+.|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEEC
Confidence 378999999999988878889999999986431 124678889999999999999998 6532 35789999999
Q ss_pred cCCCCCceeEEEEEeccccccccc------ccceEecccc
Q psy12095 87 DRFSKHDQIGEVKVALCQIDLAQT------IEEWRELQSV 120 (128)
Q Consensus 87 ~~~~~~~~lG~~~~~l~~l~~~~~------~~~w~~L~~~ 120 (128)
+..+++++||++.+++.++..+.. ...||.|.+.
T Consensus 77 ~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~ 116 (133)
T cd04033 77 NRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116 (133)
T ss_pred CCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence 999999999999999999865432 3589999865
No 75
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.84 E-value=1.7e-19 Score=108.36 Aligned_cols=111 Identities=22% Similarity=0.314 Sum_probs=87.9
Q ss_pred EEEEEEEEecC--CCCCCCCCCCCCeEEEEE-eC-CCCCeeecceeecCCCCeecceEEEcccCCC------CCCCCeEE
Q psy12095 11 SLSVTVIQAED--LPALDMGGTSDPYVKVYL-LP-DKKKKFETKVHRKTLNPVFNETFVFKGVPYA------DAMNKTLV 80 (128)
Q Consensus 11 ~l~v~i~~a~~--l~~~~~~~~~~p~~~~~~-~~-~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~------~~~~~~l~ 80 (128)
...++|..|.+ ++....++.+|||+++.+ .+ .+.++.+|++++.+.+|.|||+|.|. +... ......|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEE
Confidence 34566666666 566666778999999987 34 34458899999999999999999998 7544 23356799
Q ss_pred EEEEEccCC-CCCceeEEEEEecccccccccccceEecccccC
Q psy12095 81 FAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 81 v~v~~~~~~-~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
++|||++.+ ++|++||++.++|+.+........|++|....+
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k 124 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRK 124 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCC
Confidence 999999886 579999999999999977767778999875443
No 76
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.84 E-value=1.4e-19 Score=107.07 Aligned_cols=106 Identities=22% Similarity=0.365 Sum_probs=87.9
Q ss_pred CCEEEEEEEEecCCCCCCCC----------CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 9 ANSLSVTVIQAEDLPALDMG----------GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~----------~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
.+.|+|+|.+|++|...+.. +.+|||+.+.+. +.+..+|++...+.+|.|||+|.|. +. ....
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~~~ 75 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTE-VH----NGRN 75 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEE-cC----CCCE
Confidence 36799999999999877642 578999999983 2334678888889999999999998 65 2367
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccc--cccccceEeccccc
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDL--AQTIEEWRELQSVE 121 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~--~~~~~~w~~L~~~~ 121 (128)
+.|.||+++..+.++++|++.++|.++.. +...+.|++|.+.+
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G 120 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQG 120 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCc
Confidence 99999999988889999999999999876 56678999998653
No 77
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.83 E-value=2e-19 Score=105.44 Aligned_cols=110 Identities=27% Similarity=0.324 Sum_probs=89.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCC--CCCCeEEEEEEEcc
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYAD--AMNKTLVFAIFDFD 87 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~--~~~~~l~v~v~~~~ 87 (128)
.|+|+|.+|++|+..+..+..|||+.+.+.. ....+|++.. .+.+|.|+|.|.|. +.... .....|.++||+++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECC
Confidence 3789999999999888788999999999843 2456788865 58999999999998 65442 12467999999999
Q ss_pred CCCCCceeEEEEEecccccccccc-----cceEecccccCC
Q psy12095 88 RFSKHDQIGEVKVALCQIDLAQTI-----EEWRELQSVEGE 123 (128)
Q Consensus 88 ~~~~~~~lG~~~~~l~~l~~~~~~-----~~w~~L~~~~~~ 123 (128)
..+.+++||.+.++|.++..+... ..||.|....+.
T Consensus 78 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~ 118 (125)
T cd04051 78 PSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118 (125)
T ss_pred CCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence 988899999999999998766543 589999875543
No 78
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.82 E-value=6e-19 Score=103.66 Aligned_cols=104 Identities=32% Similarity=0.491 Sum_probs=85.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
..|+|+|++|++|+..+..+.+|||+.+.+. ....+|+++.++.+|.|+|.|.|. +... ...+.++|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~ 73 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDD 73 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCC
Confidence 3689999999999988878889999999983 346789999999999999999997 4322 25799999998852
Q ss_pred -----------CCCceeEEEEEecccccccccccceEecccccC
Q psy12095 90 -----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 90 -----------~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+.+++||.+.+++..+. .....|+.|.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~ 115 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTD 115 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCC
Confidence 46889999999998874 34578999987653
No 79
>KOG1028|consensus
Probab=99.82 E-value=6.7e-20 Score=125.84 Aligned_cols=118 Identities=41% Similarity=0.656 Sum_probs=102.9
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|+++|.|.+++|+|.|.+|++|..++..+..||||++.+...+. .+.+|.+.+.+.+|.|||+|.|. ++.+.+....
T Consensus 289 ~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l~~~~ 367 (421)
T KOG1028|consen 289 LSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQLAEVS 367 (421)
T ss_pred EEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHhheeE
Confidence 58999999999999999999999999899999999999976663 36788899999999999999997 9988888888
Q ss_pred EEEEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
+.|+||+++.++.+++||++.+.... .+....+|.++...+
T Consensus 368 l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p 408 (421)
T KOG1028|consen 368 LELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSP 408 (421)
T ss_pred EEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCc
Confidence 99999999999999999998877654 455577888876554
No 80
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.81 E-value=6.4e-19 Score=103.07 Aligned_cols=113 Identities=31% Similarity=0.437 Sum_probs=89.6
Q ss_pred CEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 10 NSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
|.|+|+|.+|++|+..+ ..+.+|||+.+.+... ....+|+++.++.+|.|+|.|.|. +.. ....|.++|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~d~~~ 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVYDFND 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEEecCC
Confidence 67999999999998654 3456899999998532 356789999999999999999998 652 24689999999999
Q ss_pred CCCCceeEEEEEecccccccccccc-eEecccccCCCCcC
Q psy12095 89 FSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQL 127 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~~~~~~~-w~~L~~~~~~~~~~ 127 (128)
.+++++||.+.++|.++..+..... |..+...++..|+|
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i 116 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGEL 116 (124)
T ss_pred CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEE
Confidence 8899999999999999977766654 55555554444443
No 81
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=8.6e-19 Score=102.55 Aligned_cols=105 Identities=29% Similarity=0.389 Sum_probs=81.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
.++|.|++|++|...+..+.+|||+++.+... ....+|.++.++.+|.|+|+|.|. +... ....+.++|||++..+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCCC
Confidence 37899999999999888889999999998422 123567788899999999999997 4322 2467999999999999
Q ss_pred CCceeEEEEEecccccccccccceEecccc
Q psy12095 91 KHDQIGEVKVALCQIDLAQTIEEWRELQSV 120 (128)
Q Consensus 91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~ 120 (128)
++++||++.+++++... .++.+|..+.+.
T Consensus 77 ~dd~iG~~~i~l~~~~~-~~~~~~~~~~~~ 105 (124)
T cd04037 77 SDDLIGETVIDLEDRFF-SKHRATCGLPPT 105 (124)
T ss_pred CCceeEEEEEeeccccc-chHHHhccCCCc
Confidence 99999999999987754 223334444333
No 82
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.81 E-value=2.2e-18 Score=101.16 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=83.6
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
...|+|+|.+|++|...+..+.+|||+.+.+ +.+..+|+++..+.+|.|+|.|.|. +.. ....|.|+|||++.
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~i~V~d~~~ 74 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC---EGESVRSPVQKDTLSPEFDTQAIFY-RKK---PRSPIKIQVWNSNL 74 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE---CCEEEEeCccCCCCCCcccceEEEE-ecC---CCCEEEEEEEECCC
Confidence 4679999999999998887889999999987 3456889999999999999999997 432 24689999999988
Q ss_pred CCCCceeEEEEEecccccccccccceEeccc
Q psy12095 89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~ 119 (128)
.+ |++||.+.+++..+. .....|++|..
T Consensus 75 ~~-d~~lG~~~~~l~~~~--~~~~~~~~l~~ 102 (126)
T cd04046 75 LC-DEFLGQATLSADPND--SQTLRTLPLRK 102 (126)
T ss_pred CC-CCceEEEEEecccCC--CcCceEEEccc
Confidence 75 799999999998763 34457888863
No 83
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=1.7e-18 Score=101.73 Aligned_cols=100 Identities=26% Similarity=0.426 Sum_probs=84.2
Q ss_pred EEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCcee
Q psy12095 16 VIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQI 95 (128)
Q Consensus 16 i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~l 95 (128)
|++|++|+. ..+.+|||+++.+ +....+|+++.++.+|.|+|+|.|. +.........+.+.||+++..+++++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~---~~~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTF---RGVKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEE---CCEeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceE
Confidence 678999988 4678999999998 3346789999999999999999998 543222356899999999998899999
Q ss_pred EEEEEecccccccccccceEeccccc
Q psy12095 96 GEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 96 G~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
|++.+++.++..+.....|++|.+..
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~~~~ 101 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLLDSN 101 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCcCCC
Confidence 99999999998887788999997654
No 84
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.80 E-value=1.7e-18 Score=100.84 Aligned_cols=103 Identities=28% Similarity=0.406 Sum_probs=85.6
Q ss_pred EEEecCCCCCCCCCCCCCeEEEEEeCCC--C--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC---
Q psy12095 16 VIQAEDLPALDMGGTSDPYVKVYLLPDK--K--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR--- 88 (128)
Q Consensus 16 i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~--- 88 (128)
.++|++|+..+..+.+|||+++.+.+.. . ...+|+++.++.+|.|+|+|.|. +.... ...+.++|||++.
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCcC
Confidence 4678999988888899999999997543 1 25789999999999999999997 44332 3579999999997
Q ss_pred -CCCCceeEEEEEecccccccccccceEeccccc
Q psy12095 89 -FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 89 -~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
.+++++||++.+++.++..+.....|++|.+..
T Consensus 83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~~ 116 (120)
T cd04048 83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGGK 116 (120)
T ss_pred CCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCCC
Confidence 789999999999999998777788899995543
No 85
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.79 E-value=2.5e-18 Score=102.74 Aligned_cols=91 Identities=38% Similarity=0.615 Sum_probs=79.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
|.|+|+|++|++|+..+. +.+|||+++.+ +.+..+|+++..+.+|.|+|.|.|. +... ...+.++|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~---g~~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL---GNQKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE---CCEEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCC
Confidence 679999999999998776 78999999998 4567889999999999999999998 5532 46799999999999
Q ss_pred CCCceeEEEEEeccccccc
Q psy12095 90 SKHDQIGEVKVALCQIDLA 108 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~~ 108 (128)
+.|++||.+.+++.++...
T Consensus 74 ~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCCCEEEEEEEEHHHhhhh
Confidence 9999999999998887543
No 86
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.79 E-value=4.3e-18 Score=99.54 Aligned_cols=93 Identities=30% Similarity=0.341 Sum_probs=77.1
Q ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095 8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD 87 (128)
Q Consensus 8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~ 87 (128)
..+.|+|+|.+|++|+. +..+.+|||+++.+. ..+.+|+++..+.+|.|+|+|.|...... ....|.|+|||++
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d 99 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRD 99 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCC
Confidence 34799999999999974 456788999999983 34788999999999999999999622221 3468999999999
Q ss_pred CCCCCceeEEEEEeccccc
Q psy12095 88 RFSKHDQIGEVKVALCQID 106 (128)
Q Consensus 88 ~~~~~~~lG~~~~~l~~l~ 106 (128)
..++|++||++.++|....
T Consensus 100 ~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 100 NGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCeeEEEEEEecCCc
Confidence 9999999999999998654
No 87
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.79 E-value=4.1e-18 Score=101.47 Aligned_cols=103 Identities=25% Similarity=0.409 Sum_probs=84.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
..|.|.|.+|++|++++ +|||.+.+ ++....+|+++..+.+|.|+|.|.|.+.+. ...+.|.|+..+..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~~ 79 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccCc
Confidence 46889999999998765 79999999 344567999999999999999999984432 24689999765432
Q ss_pred ----CCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 90 ----SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 90 ----~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
.++.+||.+.|+++++..+...+.||+|.+..+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~ 117 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN 117 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC
Confidence 2578999999999999988889999999887644
No 88
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.78 E-value=1.4e-17 Score=96.43 Aligned_cols=102 Identities=36% Similarity=0.526 Sum_probs=79.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|+|+|++|++|+.. +.+|||+.+.+. +....+|++... .+|.|+|+|.|. +...+.....+.+.+|+.+....
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCC
Confidence 78999999999876 688999999983 234568888888 999999999998 76554444678888999887666
Q ss_pred CceeEEEEEecccccccccccceEecccccC
Q psy12095 92 HDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+.++|.+.+ ..+..+...+.|++|.+.+.
T Consensus 75 ~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~ 103 (117)
T cd08383 75 DIVIGKVAL--SKLDLGQGKDEWFPLTPVDP 103 (117)
T ss_pred eeEEEEEEe--cCcCCCCcceeEEECccCCC
Confidence 666776554 55555777889999987643
No 89
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.77 E-value=4.1e-17 Score=96.63 Aligned_cols=105 Identities=27% Similarity=0.334 Sum_probs=83.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC----------CeeecceeecCCCCee-cceEEEcccCCCCCCCCeE
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----------KKFETKVHRKTLNPVF-NETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~----------~~~~t~~~~~~~~p~~-~e~~~f~~~~~~~~~~~~l 79 (128)
...|.+++|++|. ++..+.+|||+++.+.+.+. +..+|+++.++.+|.| +|.|.|. +.. ...|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLP----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCC----CCEE
Confidence 3678999999998 66678999999999976543 3688999999999999 9999998 542 2479
Q ss_pred EEEEEEccCCCC---CceeEEEEEecccccccc---cccceEeccccc
Q psy12095 80 VFAIFDFDRFSK---HDQIGEVKVALCQIDLAQ---TIEEWRELQSVE 121 (128)
Q Consensus 80 ~v~v~~~~~~~~---~~~lG~~~~~l~~l~~~~---~~~~w~~L~~~~ 121 (128)
.++|||++..++ +++||++.+++.++..+. ....|+.|...+
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~ 123 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT 123 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC
Confidence 999999765333 689999999999986553 245799987654
No 90
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.75 E-value=5.6e-17 Score=95.33 Aligned_cols=106 Identities=31% Similarity=0.463 Sum_probs=85.1
Q ss_pred CEEEEEEEEecCCCCCC--CCCCCCCeEEEEEeCCC---CCeeecceeecCC-CCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDK---KKKFETKVHRKTL-NPVFNETFVFKGVPYADAMNKTLVFAI 83 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~~~---~~~~~t~~~~~~~-~p~~~e~~~f~~~~~~~~~~~~l~v~v 83 (128)
..|+|+|++|++|+..+ ..+..|||+.+.+...+ ..+.+|+++..+. +|.|+|+|.|. +...+ ...+.++|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEE
Confidence 47899999999999876 46788999999986543 3567888887665 99999999998 54322 34689999
Q ss_pred EEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 84 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
|+++.. +++++|++.++++.+..+ ..|++|.+..+
T Consensus 79 ~d~~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~ 113 (128)
T cd00275 79 YDEDSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKG 113 (128)
T ss_pred EeCCCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCC
Confidence 999987 889999999999999554 36888876544
No 91
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.74 E-value=7.2e-17 Score=94.54 Aligned_cols=104 Identities=28% Similarity=0.353 Sum_probs=82.5
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
..|.|+|.+|. +...+..+.+|||+.+.+. +....+|+++..+.+|.|++.|.|. +.. ...|.++|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~ 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTL 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCC
Confidence 46899999998 4444446789999999983 2236789999999999999999998 542 35799999999999
Q ss_pred CCCceeEEEEEeccccccccc-----ccceEeccccc
Q psy12095 90 SKHDQIGEVKVALCQIDLAQT-----IEEWRELQSVE 121 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~~~~~-----~~~w~~L~~~~ 121 (128)
+.+++||++.++|.++..... ...|++|....
T Consensus 74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 999999999999998754322 23589887544
No 92
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=6e-17 Score=94.96 Aligned_cols=99 Identities=31% Similarity=0.456 Sum_probs=82.1
Q ss_pred EEEEEEEEecCCCCCC--CCC--CCCCeEEEEEeCCCCCeeecceeecCCC--CeecceEEEcccCC-------------
Q psy12095 11 SLSVTVIQAEDLPALD--MGG--TSDPYVKVYLLPDKKKKFETKVHRKTLN--PVFNETFVFKGVPY------------- 71 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~--~~~--~~~p~~~~~~~~~~~~~~~t~~~~~~~~--p~~~e~~~f~~~~~------------- 71 (128)
.|+|.|.+|++++..+ ..+ .+|||+++++.+....+++|.++.++.+ |.||+.|.|. +..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeec
Confidence 4899999999966433 244 4899999999776566889999999998 9999999987 555
Q ss_pred --------CCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccc
Q psy12095 72 --------ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 110 (128)
Q Consensus 72 --------~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~ 110 (128)
+......+.+.|||.+.+++|+++|.++++|..+..+..
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 344557899999999999999999999999998876654
No 93
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.72 E-value=2.3e-16 Score=90.36 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=69.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEc---
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF--- 86 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~--- 86 (128)
|.|+|.+|++|. +.+|||+.+.+.+.+. ...+|+++..+.+|.|||+|.|. +.. ...+.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEcccc
Confidence 579999999995 4579999998876543 46899999999999999999998 652 35899999998
Q ss_pred ----cCCCCCceeEEEEEeccc
Q psy12095 87 ----DRFSKHDQIGEVKVALCQ 104 (128)
Q Consensus 87 ----~~~~~~~~lG~~~~~l~~ 104 (128)
+..+.|+++|.+.+.|+.
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 456789999998888765
No 94
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.70 E-value=4.1e-16 Score=89.44 Aligned_cols=92 Identities=25% Similarity=0.471 Sum_probs=73.1
Q ss_pred EEEEEecCCCCCCCCCCCCCeEEEEEeCCC---CCeeecceeecCCCCeecceEEEcccCC-CCC-CCCeEEEEEEEccC
Q psy12095 14 VTVIQAEDLPALDMGGTSDPYVKVYLLPDK---KKKFETKVHRKTLNPVFNETFVFKGVPY-ADA-MNKTLVFAIFDFDR 88 (128)
Q Consensus 14 v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~---~~~~~t~~~~~~~~p~~~e~~~f~~~~~-~~~-~~~~l~v~v~~~~~ 88 (128)
+-.++|++|+..+..+.+|||+++++.+.. ....+|+++..+.+|.|+ .|.|. +.. ... ....|.++|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~-~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP-LQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE-HHHhcCCCcCCEEEEEEEEeCC
Confidence 345689999998888899999999986543 235789999999999999 67765 211 110 13689999999999
Q ss_pred CCCCceeEEEEEecccccc
Q psy12095 89 FSKHDQIGEVKVALCQIDL 107 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~ 107 (128)
.++|++||++.++++++..
T Consensus 82 ~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 82 SGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCcEEEEEEEEHHHHhc
Confidence 9999999999999999863
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=123.44 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=90.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
-|.|+|+|.+|+++. +..+.+||||++.+.. ....+|++++++.+|.|+|.|.|. +.... ....+.++|||++.
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~-~~~p~-~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWA-FDSPP-KGQKLHISCKSKNT 2052 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeee-ecCCC-CCCceEEEEEecCc
Confidence 578999999999998 4478999999999942 225679999999999999999976 43322 23569999999999
Q ss_pred CCCCceeEEEEEecccccccccccceEecccccCCCC
Q psy12095 89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 125 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~ 125 (128)
+++| .+|.+.|++.++..++..+.||+|.++++..|
T Consensus 2053 f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G 2088 (2102)
T PLN03200 2053 FGKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088 (2102)
T ss_pred cCCC-CCceEEEEHHHHhcCceeeeeeecCcccccCC
Confidence 9655 89999999999988889999999997544444
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.70 E-value=2.5e-16 Score=85.97 Aligned_cols=85 Identities=44% Similarity=0.728 Sum_probs=73.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|+|+|.+|++|...+..+..+||+++.+........+|++...+.+|.|++.|.|. +..... ..|.|+||+.+..++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCCCC
Confidence 78999999999987778899999999997655456889999999999999999998 655443 449999999999998
Q ss_pred CceeEEEE
Q psy12095 92 HDQIGEVK 99 (128)
Q Consensus 92 ~~~lG~~~ 99 (128)
+++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999863
No 97
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=5.4e-16 Score=89.07 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q psy12095 28 GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 107 (128)
Q Consensus 28 ~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~ 107 (128)
.+.+|||+.+.+. +....+|+++..+.+|.|+|.|.|. +.. .....|.|.||+++.+ ++++||.+.++|.++..
T Consensus 10 ~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~-v~~--~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 10 TGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFL-VTD--RRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLID 83 (111)
T ss_pred CCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEE-ecC--cCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHh
Confidence 5778999999983 2235678888889999999999998 542 2346799999999998 89999999999998843
Q ss_pred -cccccceEeccc
Q psy12095 108 -AQTIEEWRELQS 119 (128)
Q Consensus 108 -~~~~~~w~~L~~ 119 (128)
+.....||+|.+
T Consensus 84 ~~~~~~~w~~L~~ 96 (111)
T cd04052 84 ATSVGQQWFPLSG 96 (111)
T ss_pred hhhccceeEECCC
Confidence 345678999986
No 98
>PLN03008 Phospholipase D delta
Probab=99.65 E-value=2.3e-15 Score=108.83 Aligned_cols=87 Identities=28% Similarity=0.440 Sum_probs=73.6
Q ss_pred CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccc
Q psy12095 29 GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 108 (128)
Q Consensus 29 ~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~ 108 (128)
+.+|||+.+.+. +.+..+|+++.++.||.|||+|.|. +... ...|.+.|+|.+.++ +++||++.+++.++..|
T Consensus 75 ~tSDPYV~I~Lg--~~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVP--QATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEEC--CcceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence 356999999992 3446689999999999999999998 5432 358999999999997 47999999999999999
Q ss_pred ccccceEecccccC
Q psy12095 109 QTIEEWRELQSVEG 122 (128)
Q Consensus 109 ~~~~~w~~L~~~~~ 122 (128)
...+.|++|....+
T Consensus 148 e~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 148 ERISGWFPVLGASG 161 (868)
T ss_pred CceEEEEEccccCC
Confidence 99999999977653
No 99
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.63 E-value=1.7e-14 Score=80.77 Aligned_cols=99 Identities=46% Similarity=0.699 Sum_probs=80.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS 90 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~ 90 (128)
.+.+.|.+|+++.........+||+++.+.+.+....+|+....+.+|.|++.|.|. +.... ...|.+++|+....+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCcc
Confidence 368999999999887665678999999986443346778888888899999999998 55432 468999999999887
Q ss_pred CCceeEEEEEeccccccccccc
Q psy12095 91 KHDQIGEVKVALCQIDLAQTIE 112 (128)
Q Consensus 91 ~~~~lG~~~~~l~~l~~~~~~~ 112 (128)
.+.++|.+.+++.++..+....
T Consensus 78 ~~~~~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 78 RDDFIGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred CCceeEEEEEEHHHcccCcccc
Confidence 8899999999998886665433
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.60 E-value=3.9e-14 Score=79.07 Aligned_cols=101 Identities=51% Similarity=0.746 Sum_probs=83.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
|.|.|.+|+++.........+||+.+.+.. ....+|.+...+.+|.|++.|.|. +... ....+.+++|+.+....
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCC
Confidence 468899999998766667899999999843 356778888888999999999998 5532 34679999999998887
Q ss_pred CceeEEEEEeccccc-ccccccceEec
Q psy12095 92 HDQIGEVKVALCQID-LAQTIEEWREL 117 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~-~~~~~~~w~~L 117 (128)
+.++|.+.+++..+. .......|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceecC
Confidence 899999999999987 66667788875
No 101
>KOG2059|consensus
Probab=99.56 E-value=1.7e-14 Score=101.82 Aligned_cols=107 Identities=30% Similarity=0.500 Sum_probs=94.0
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
...|.|+|.+|+||+..+..+..||||.+.+. .....+|.++..++.|.|.|.|.|. ++... ..+.+.|||.+
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~F---~~l~fYv~D~d- 76 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFE-IPRTF---RYLSFYVWDRD- 76 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEe-cCcce---eeEEEEEeccc-
Confidence 45789999999999999999999999999984 3446779999999999999999999 87654 56999999999
Q ss_pred CCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+++|+.||.+.|.-+++......+.|+.|.+-+.
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ 110 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDP 110 (800)
T ss_pred cccccccceeeeeHHHHhhCCCCccceeccccCC
Confidence 9999999999999888877778899999987543
No 102
>PLN02223 phosphoinositide phospholipase C
Probab=99.53 E-value=2.7e-13 Score=94.67 Aligned_cols=108 Identities=18% Similarity=0.317 Sum_probs=83.5
Q ss_pred CEEEEEEEEecCCCCC-----CCCCCCCCeEEEEEeC--CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEE
Q psy12095 10 NSLSVTVIQAEDLPAL-----DMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFA 82 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~-----~~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~ 82 (128)
..|+|+|+.|++++.. +....+|||+++.+.. .+....+|.+..++.+|.|+|+|.|. +...++ ..|+|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PEL--AlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDL--ALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCc--eEEEEE
Confidence 4689999999987521 2245679999999853 33445677766788999999999999 655443 568999
Q ss_pred EEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 83 IFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 83 v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
|+|++....++|+|+..+++..++.|. .+++|.++.+.
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~ 523 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGK 523 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcC
Confidence 999998888999999999999998875 45677665543
No 103
>KOG1011|consensus
Probab=99.53 E-value=2e-14 Score=101.49 Aligned_cols=103 Identities=28% Similarity=0.471 Sum_probs=86.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC-
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR- 88 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~- 88 (128)
..+++++++|++|..++..+++|||+...+ +..+.+|+++...++|.|+|.|+|.|.... ..|.+.|||.+.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv---~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~d 367 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV---GKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDND 367 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEee---cccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCccc
Confidence 468899999999999999999999999998 455677999999999999999999954433 479999999773
Q ss_pred ----------CCCCceeEEEEEecccccccccccceEeccccc
Q psy12095 89 ----------FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 89 ----------~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
-..|+|+|+..|.+..+. ...+-||.|..+.
T Consensus 368 lksklrqkl~resddflgqtvievrtls--gemdvwynlekrt 408 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRT 408 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhcc
Confidence 356889999999988773 3468899997653
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=99.52 E-value=4.2e-13 Score=95.19 Aligned_cols=109 Identities=22% Similarity=0.318 Sum_probs=85.9
Q ss_pred CCEEEEEEEEecCCCCC------CCCCCCCCeEEEEEeC--CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 9 ANSLSVTVIQAEDLPAL------DMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
...|+|+|+.|++++.. +.....|||+++.+.. ....+.+|+++.++.+|.|+++|.|. +...++ ..++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEE
Confidence 35799999999887521 1124468999998853 33456789999888999999999998 655443 5689
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
|.|+|++..+.++++|+..+++..+..|. .|++|.+..+.
T Consensus 546 f~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~ 585 (599)
T PLN02952 546 IEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGE 585 (599)
T ss_pred EEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCC
Confidence 99999998888999999999999998876 48999766554
No 105
>KOG0905|consensus
Probab=99.47 E-value=8.9e-14 Score=102.87 Aligned_cols=117 Identities=35% Similarity=0.610 Sum_probs=102.0
Q ss_pred eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l 79 (128)
+++|+ ++.|.|-|.-+++|+-...+..+|||++.++.|+..+ +.||+++..+.+|.|||...+++.+.+.+....+
T Consensus 1518 sIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReL 1595 (1639)
T KOG0905|consen 1518 SISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQREL 1595 (1639)
T ss_pred EEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhhee
Confidence 45565 9999999999999987766788999999999887754 6789999999999999999998777776666889
Q ss_pred EEEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095 80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120 (128)
Q Consensus 80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~ 120 (128)
.++||+.+....+.++|.+.|+|......+...+||.|...
T Consensus 1596 Q~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1596 QVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred eeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 99999999999999999999999998777777799998653
No 106
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.45 E-value=1.4e-12 Score=92.44 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=84.1
Q ss_pred CCEEEEEEEEecCCCCC------CCCCCCCCeEEEEEeC--CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 9 ANSLSVTVIQAEDLPAL------DMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
...|.|+|+.+++++.. +.....|||+++.+.. ....+.+|++..++.+|.|+++|.|. +...++ ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence 35799999999986421 2234579999998853 33445678887889999999999998 655544 5689
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~ 123 (128)
|.|+|++....++|+|+..+++..+..|.. .++|.+..+.
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~ 584 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGV 584 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcC
Confidence 999999988899999999999999988754 4566555443
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.42 E-value=3.8e-12 Score=90.19 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=83.3
Q ss_pred CCEEEEEEEEecCCC---C---CCCCCCCCCeEEEEEe--CCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095 9 ANSLSVTVIQAEDLP---A---LDMGGTSDPYVKVYLL--PDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~---~---~~~~~~~~p~~~~~~~--~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~ 80 (128)
...|+|+|+.+++++ + .+.....|||+++.+. +.+..+.+|+++.++.+|.|+++|.|. +...++ ..|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEE
Confidence 347999999998753 1 1123467999999885 344556789999988999999999998 655443 5689
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+.|+|++....++|+|+..+++..+..|.. .++|.+..+
T Consensus 528 f~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g 566 (581)
T PLN02222 528 LEVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKG 566 (581)
T ss_pred EEEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCc
Confidence 999999888889999999999999988754 456655544
No 108
>KOG0169|consensus
Probab=99.40 E-value=1.7e-12 Score=92.74 Aligned_cols=101 Identities=24% Similarity=0.409 Sum_probs=80.4
Q ss_pred EEEEEEEEecCCCCCC-C---CCCCCCeEEEEEe--CCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095 11 SLSVTVIQAEDLPALD-M---GGTSDPYVKVYLL--PDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAI 83 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~-~---~~~~~p~~~~~~~--~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v 83 (128)
.|.|.|+.++++.+.. . ....+||+.+.+. |....+.+|+++. ++.+|.|+|+|.|. +...++ .-|++.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPEL--AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPEL--ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eeccce--eEEEEEE
Confidence 6999999999766432 1 2457899888874 3444577899554 88899999999999 776665 5689999
Q ss_pred EEccCCCCCceeEEEEEecccccccccccce
Q psy12095 84 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 114 (128)
Q Consensus 84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w 114 (128)
+|++..++|+|+|+..+++..+..|..+-.-
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyRhVpL 724 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQGYRHVPL 724 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCceeeeee
Confidence 9999999999999999999999888654433
No 109
>PLN02228 Phosphoinositide phospholipase C
Probab=99.38 E-value=9.6e-12 Score=87.94 Aligned_cols=107 Identities=20% Similarity=0.328 Sum_probs=82.2
Q ss_pred CEEEEEEEEecCCC---CCC---CCCCCCCeEEEEEeC--CCCCeeecceeecCCCCee-cceEEEcccCCCCCCCCeEE
Q psy12095 10 NSLSVTVIQAEDLP---ALD---MGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVF-NETFVFKGVPYADAMNKTLV 80 (128)
Q Consensus 10 ~~l~v~i~~a~~l~---~~~---~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~-~e~~~f~~~~~~~~~~~~l~ 80 (128)
..|+|+|+.|++++ +.. .....|||+++.+.+ .+....+|+++.++.+|.| +++|.|. +...++ ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEEE
Confidence 47999999999873 111 134579999998853 3445678888888899999 8999998 655543 5689
Q ss_pred EEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
+.|+|++..+.++++|+..+++..+..|.. .++|.+..+
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G 546 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAG 546 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCC
Confidence 999999888889999999999999987754 455655544
No 110
>KOG1328|consensus
Probab=99.37 E-value=3.5e-13 Score=95.99 Aligned_cols=104 Identities=38% Similarity=0.591 Sum_probs=90.5
Q ss_pred eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC----CeeecceeecCCCCeecceEEEcccCCCCCC--
Q psy12095 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----KKFETKVHRKTLNPVFNETFVFKGVPYADAM-- 75 (128)
Q Consensus 2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~----~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-- 75 (128)
.+.|+.....|.|.|+-|+++.+.+.+|.+|||+.+.+.|.-. ..++|++++.+++|.|+|+|.|. ++.+.-.
T Consensus 939 r~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te 1017 (1103)
T KOG1328|consen 939 RAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPPEPCSTE 1017 (1103)
T ss_pred EEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCccccccc
Confidence 4678899999999999999999999999999999999976542 36789999999999999999999 7765422
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEeccccc
Q psy12095 76 NKTLVFAIFDFDRFSKHDQIGEVKVALCQID 106 (128)
Q Consensus 76 ~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~ 106 (128)
...+.++|+|++-...++|-|.+.+.|+++.
T Consensus 1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3458899999999999999999999988873
No 111
>PLN02270 phospholipase D alpha
Probab=99.30 E-value=5.2e-11 Score=86.61 Aligned_cols=107 Identities=19% Similarity=0.306 Sum_probs=86.5
Q ss_pred CCEEEEEEEEecCCCCCC------------------CCCCCCCeEEEEEeCCCCCeeecceeecC-CCCeecceEEEccc
Q psy12095 9 ANSLSVTVIQAEDLPALD------------------MGGTSDPYVKVYLLPDKKKKFETKVHRKT-LNPVFNETFVFKGV 69 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~------------------~~~~~~p~~~~~~~~~~~~~~~t~~~~~~-~~p~~~e~~~f~~~ 69 (128)
.|.|.++|.+|++|+..+ ..+.++||+.+.+ .+.+..+|+++.+. .+|.|+|.|...+-
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEeec
Confidence 578999999999997521 1245699999998 35567899999864 69999999998733
Q ss_pred CCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122 (128)
Q Consensus 70 ~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~ 122 (128)
.. ...|.+.|.|.+.++. .+||.+.++..++..|...+.|+++.+..+
T Consensus 85 h~----~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~ 132 (808)
T PLN02270 85 HM----ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDK 132 (808)
T ss_pred cC----cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCC
Confidence 22 2579999999888875 499999999999999999999999987654
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.29 E-value=2.8e-11 Score=90.00 Aligned_cols=107 Identities=34% Similarity=0.544 Sum_probs=87.8
Q ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095 8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD 87 (128)
Q Consensus 8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~ 87 (128)
..+.|+|.+..|+||+..+.++-+|||+.+.+- +...++|++++.+++|.|||.+... +.... ...+.+.++|++
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln--~k~vyktkv~KktlNPvwNEe~~i~-v~~r~--~D~~~i~v~Dwd 1112 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN--EKSVYKTKVVKKTLNPVWNEEFTIE-VLNRV--KDVLTINVNDWD 1112 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEec--ceecccccchhccCCCCccccceEe-eeccc--cceEEEEEeecc
Confidence 488999999999999999989999999999983 3347889999999999999999988 54332 356889999999
Q ss_pred CCCCCceeEEEEEecccccccccccceEeccc
Q psy12095 88 RFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119 (128)
Q Consensus 88 ~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~ 119 (128)
.-.+++.||.+.++|..+..+.....-.+|.+
T Consensus 1113 ~~~knd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038 1113 SGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred cCCCccccccccccHhhcCcCCccceeeeccC
Confidence 99999999999999999876654443333433
No 113
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.24 E-value=2.7e-11 Score=65.18 Aligned_cols=101 Identities=27% Similarity=0.435 Sum_probs=77.3
Q ss_pred EEEEEEecCCC-CCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 13 SVTVIQAEDLP-ALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 13 ~v~i~~a~~l~-~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
.+++++++++. +..-...+..|++--+.-.....++|++...+.+|.|+|+|.|. +...++.+.++.++|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCc
Confidence 47888999887 33323444567766553333346788888899999999999999 88888888889999988 4467
Q ss_pred CceeEEEEEecccccccccccceEec
Q psy12095 92 HDQIGEVKVALCQIDLAQTIEEWREL 117 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~~~~~~w~~L 117 (128)
.+.+|.+.+.|+++.. +..++|.++
T Consensus 79 Ke~iG~~sL~l~s~ge-eE~~HW~e~ 103 (103)
T cd08684 79 KRTIGECSLSLRTLST-QETDHWLEI 103 (103)
T ss_pred cceeeEEEeecccCCH-HHhhhhhcC
Confidence 7899999999999854 356788764
No 114
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.20 E-value=1.5e-10 Score=86.21 Aligned_cols=96 Identities=29% Similarity=0.523 Sum_probs=79.3
Q ss_pred CCCEEEEEEEEecCCCCCC--CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095 8 NANSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD 85 (128)
Q Consensus 8 ~~~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~ 85 (128)
.-|.+.++|.+|+++...+ .++..|||+.+.. ++....||++.+.+.+|.|||++... +... ...|.+++||
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~--~~r~~gkT~v~~nt~nPvwNEt~Yi~-lns~---~d~L~LslyD 507 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF--SDRVIGKTRVKKNTLNPVWNETFYIL-LNSF---TDPLNLSLYD 507 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEe--ccccCCccceeeccCCccccceEEEE-eccc---CCceeEEEEe
Confidence 3578999999999998776 5788999999986 33445589999999999999999876 4322 3679999999
Q ss_pred ccCCCCCceeEEEEEecccccccc
Q psy12095 86 FDRFSKHDQIGEVKVALCQIDLAQ 109 (128)
Q Consensus 86 ~~~~~~~~~lG~~~~~l~~l~~~~ 109 (128)
.+....|+.+|.+.+.|..+....
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNP 531 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhcc
Confidence 999999999999999988775443
No 115
>KOG1328|consensus
Probab=99.16 E-value=4.7e-12 Score=90.43 Aligned_cols=108 Identities=31% Similarity=0.557 Sum_probs=84.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC----------------------------eeecceeecCCCCeecc
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK----------------------------KFETKVHRKTLNPVFNE 62 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~----------------------------~~~t~~~~~~~~p~~~e 62 (128)
.+.|.+..|.++..++.++.+|||+.+.+.+...+ .+-|++.+.+++|.|+|
T Consensus 115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E 194 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE 194 (1103)
T ss_pred HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence 34456677889999999999999998876442210 12366777899999999
Q ss_pred eEEEcccCCCCCCCCeEEEEEEEcc---------------------------------CCC---CCceeEEEEEeccccc
Q psy12095 63 TFVFKGVPYADAMNKTLVFAIFDFD---------------------------------RFS---KHDQIGEVKVALCQID 106 (128)
Q Consensus 63 ~~~f~~~~~~~~~~~~l~v~v~~~~---------------------------------~~~---~~~~lG~~~~~l~~l~ 106 (128)
.|.|. .+++....+.+.+||++ ..+ .|+|+|++.|+|.+++
T Consensus 195 kF~F~---IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 195 KFQFT---IEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred heeee---hhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 99998 56777788999999987 112 3889999999999995
Q ss_pred ccccccceEecccccC
Q psy12095 107 LAQTIEEWRELQSVEG 122 (128)
Q Consensus 107 ~~~~~~~w~~L~~~~~ 122 (128)
. .+.++||.|++++.
T Consensus 272 ~-~Gld~WFkLepRS~ 286 (1103)
T KOG1328|consen 272 P-DGLDQWFKLEPRSD 286 (1103)
T ss_pred c-chHHHHhccCcccc
Confidence 4 46899999998764
No 116
>KOG1031|consensus
Probab=99.13 E-value=2.6e-10 Score=80.36 Aligned_cols=107 Identities=30% Similarity=0.545 Sum_probs=90.3
Q ss_pred CEEEEEEEEecCCCCCCCCC-CCCCeEEEEEeCCCCCeeecceeecCCCCeec-ceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095 10 NSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN-ETFVFKGVPYADAMNKTLVFAIFDFD 87 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~-~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~-e~~~f~~~~~~~~~~~~l~v~v~~~~ 87 (128)
+.|.|.|..|++|+-++..+ ..|.|+.+.+ +...++|.+-..+++|.|| +.|.|. +...++.+..+.|.+.|++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~---~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF---ANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEe---cccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEeccc
Confidence 67889999999999887644 4688999988 4556789999999999999 888998 8788888899999999999
Q ss_pred CCCCCceeEEEEEeccccccc----------ccccceEecccc
Q psy12095 88 RFSKHDQIGEVKVALCQIDLA----------QTIEEWRELQSV 120 (128)
Q Consensus 88 ~~~~~~~lG~~~~~l~~l~~~----------~~~~~w~~L~~~ 120 (128)
..+.++-||.+.++++.+... ....+|+++.+.
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt 121 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT 121 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee
Confidence 999999999999999886432 335689998765
No 117
>KOG1013|consensus
Probab=99.12 E-value=2e-10 Score=75.46 Aligned_cols=112 Identities=32% Similarity=0.503 Sum_probs=93.0
Q ss_pred eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL 79 (128)
Q Consensus 2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l 79 (128)
++.|......+.|+++.+..|..++.++-+|||+..++.++... +.+|.+.+.+.+|.|++.|.+. +....+....+
T Consensus 225 sl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa~~kv 303 (362)
T KOG1013|consen 225 SLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IGPGDLAYKKV 303 (362)
T ss_pred eeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CCccchhcceE
Confidence 67888889999999999999999999999999999998765443 6778889999999999999999 88888877889
Q ss_pred EEEEEEccCCCCCceeEEEEEecccccccccccceEe
Q psy12095 80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 116 (128)
Q Consensus 80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~ 116 (128)
.|.+|+.+..+..+++|-.... ...++...++|+.
T Consensus 304 ~lsvgd~~~G~s~d~~GG~~~g--~~rr~~v~~h~gr 338 (362)
T KOG1013|consen 304 ALSVGDYDIGKSNDSIGGSMLG--GYRRGEVHKHWGR 338 (362)
T ss_pred EEeecccCCCcCccCCCccccc--ccccchhhcCccc
Confidence 9999999998888898875543 3444555556654
No 118
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.05 E-value=1.9e-09 Score=60.34 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=65.1
Q ss_pred EEEEEEEecCCCCCC---CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095 12 LSVTVIQAEDLPALD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR 88 (128)
Q Consensus 12 l~v~i~~a~~l~~~~---~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~ 88 (128)
|.|+|..++++.... ..+.++||+.+.+. +..+.+|+. +.+|.|+|.|.|. +- ....+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~-Vd----k~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIP-VE----KNNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEE-ec----CCcEEEEEEEeCCC
Confidence 578999999998666 46778999999983 333566665 4899999999998 52 24689999999865
Q ss_pred CCCCceeEEEEEecccccc
Q psy12095 89 FSKHDQIGEVKVALCQIDL 107 (128)
Q Consensus 89 ~~~~~~lG~~~~~l~~l~~ 107 (128)
.....+|...+.++++..
T Consensus 71 -~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -CeecceeeehhhHHHHHH
Confidence 234479999999888743
No 119
>KOG2059|consensus
Probab=98.97 E-value=1.3e-09 Score=77.82 Aligned_cols=113 Identities=25% Similarity=0.379 Sum_probs=81.9
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeC-CCCCeeecceeecCCCCeecceEEEcccCCC-------------CCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKGVPYA-------------DAM 75 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~-------------~~~ 75 (128)
..+.+.+.+++++-|.. ++..|||+++.... ......+|++.+.+.+|.|+|.|.|. +... +..
T Consensus 131 ~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~~~e~~ 208 (800)
T KOG2059|consen 131 SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMPEEEDD 208 (800)
T ss_pred CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-eccccccccchhcCcccCCc
Confidence 34455555666655554 55689999998732 22234679999999999999999998 4433 112
Q ss_pred CCeEEEEEEE-ccCCCCCceeEEEEEecccccccccccceEecccccCCC
Q psy12095 76 NKTLVFAIFD-FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 124 (128)
Q Consensus 76 ~~~l~v~v~~-~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~ 124 (128)
...+++.+|+ .+....+.|+|++.+++...........||-|.+.+..+
T Consensus 209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~ 258 (800)
T KOG2059|consen 209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGE 258 (800)
T ss_pred eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcc
Confidence 3568899998 555666899999999998887666677899999875433
No 120
>KOG1264|consensus
Probab=98.87 E-value=2.7e-08 Score=72.57 Aligned_cols=95 Identities=29% Similarity=0.511 Sum_probs=74.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecc-eeecCCCCeec-ceEEEcccCCCCCCCCeEEEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETK-VHRKTLNPVFN-ETFVFKGVPYADAMNKTLVFAIFD 85 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~-~~~~~~~p~~~-e~~~f~~~~~~~~~~~~l~v~v~~ 85 (128)
..|.|.++.|++|+..+ -+-..||+.+.+.... ..+++|. +..+.++|.|+ +.|.|. +...+ -..|++.|++
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe--~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFE-IYNPE--FAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEE-eeCCc--eEEEEEEEec
Confidence 46889999999998554 3344599999885322 2355555 45689999999 999999 66544 3679999999
Q ss_pred ccCCCCCceeEEEEEeccccccc
Q psy12095 86 FDRFSKHDQIGEVKVALCQIDLA 108 (128)
Q Consensus 86 ~~~~~~~~~lG~~~~~l~~l~~~ 108 (128)
.+-++...|||++.+++..++.|
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred ccccCCcceeeeeecchhhhhcc
Confidence 99999888999999999998766
No 121
>KOG1013|consensus
Probab=98.84 E-value=2.2e-10 Score=75.26 Aligned_cols=108 Identities=35% Similarity=0.546 Sum_probs=91.1
Q ss_pred CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT 78 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~ 78 (128)
|.+.|...+..+.++|.+|.+|.+++.++..|||++..+++.... +.+|++..++.||.|+++.....+..+......
T Consensus 84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence 456788899999999999999999999999999999999875543 577888889999999988877766666655677
Q ss_pred EEEEEEEccCCCCCceeEEEEEeccccccc
Q psy12095 79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLA 108 (128)
Q Consensus 79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~ 108 (128)
+++.+.+...+.+++++|+..+++..+...
T Consensus 164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~ 193 (362)
T KOG1013|consen 164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPL 193 (362)
T ss_pred hheeeccCcccccccCcccchhhhhccChh
Confidence 889999999999999999999887776543
No 122
>KOG1011|consensus
Probab=98.71 E-value=1.3e-07 Score=67.92 Aligned_cols=111 Identities=27% Similarity=0.378 Sum_probs=86.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEe-C---CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-P---DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD 85 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-~---~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~ 85 (128)
..++|.|+.|.+|.=.. .+..-||+.+.+. | +..+++.|+...++-.|.+||+|.|-......++...+.+.|-|
T Consensus 1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKD 1203 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKD 1203 (1283)
T ss_pred ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehh
Confidence 47888999998886432 4566799988774 2 22345667777788889999999998333344555778999988
Q ss_pred ccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095 86 FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 86 ~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
+--...|+.+|.+.+.|.++....+...|++|..+-
T Consensus 1204 YCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrri 1239 (1283)
T KOG1011|consen 1204 YCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRI 1239 (1283)
T ss_pred heeecccceeeeeeeehhhHhhcCceeEeeeccccc
Confidence 888888999999999999998888889999997653
No 123
>PLN02352 phospholipase D epsilon
Probab=98.70 E-value=2.4e-07 Score=67.79 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=72.4
Q ss_pred CCEEEEEEEEecCCCCCC----C-CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095 9 ANSLSVTVIQAEDLPALD----M-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI 83 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~----~-~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v 83 (128)
.|.|.++|.+|+-+...- . ....+||+.+.+ ++.+..+| .+..+|.|+|.|...+-... ...|.+.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~v 80 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITL 80 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEE
Confidence 478999999997432211 0 112289999998 34456667 44559999999998733221 24688888
Q ss_pred EEccCCCCCceeEEEEEeccccccccc-ccceEecccccC
Q psy12095 84 FDFDRFSKHDQIGEVKVALCQIDLAQT-IEEWRELQSVEG 122 (128)
Q Consensus 84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~-~~~w~~L~~~~~ 122 (128)
.| .-.+||.+.++...+..|.. .++|+++.+..+
T Consensus 81 k~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~ 115 (758)
T PLN02352 81 KT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG 115 (758)
T ss_pred ec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence 77 25689999999999988866 899999987654
No 124
>KOG1326|consensus
Probab=98.64 E-value=3.3e-08 Score=73.12 Aligned_cols=92 Identities=32% Similarity=0.450 Sum_probs=75.2
Q ss_pred cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCe--eecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEE
Q psy12095 7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIF 84 (128)
Q Consensus 7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~--~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~ 84 (128)
|-.-.++|.+++|.+|.+.+.++..|||+.+.++ ... -+...+..+++|.|++.|.+.+.-. ....+.+.||
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp---~ek~l~v~vy 683 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLP---FEKDLIVEVY 683 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccc---hhhcceeEEE
Confidence 3445788999999999999999999999999983 332 3466788999999999888773222 2356899999
Q ss_pred EccCCCCCceeEEEEEeccc
Q psy12095 85 DFDRFSKHDQIGEVKVALCQ 104 (128)
Q Consensus 85 ~~~~~~~~~~lG~~~~~l~~ 104 (128)
+++.+++|+.+|+..+.|+.
T Consensus 684 d~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 684 DHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred Eeecccccchhhceehhhhh
Confidence 99999999999999998775
No 125
>KOG1326|consensus
Probab=98.50 E-value=3e-08 Score=73.37 Aligned_cols=116 Identities=25% Similarity=0.264 Sum_probs=88.0
Q ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCC------CCCCeEEE
Q psy12095 8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYAD------AMNKTLVF 81 (128)
Q Consensus 8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~------~~~~~l~v 81 (128)
....+++.|.+|+.|...+..+.+|||+.+.. ..+.++|.++.++++|.|+++..|..+.... .+-..+.+
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f---~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEF---CGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhc---ccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 56678889999999998888889999999976 4567789999999999999999987322111 01145789
Q ss_pred EEEEccCCCCCceeEEEEEecccccccccccceEecccccCCCCcC
Q psy12095 82 AIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQL 127 (128)
Q Consensus 82 ~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~ 127 (128)
++||.+..+.++++|+......-+.. ...-.|+++..+..-.+++
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~ 325 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDV 325 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccch
Confidence 99999999999999987765443322 4456799988776555543
No 126
>KOG2060|consensus
Probab=98.50 E-value=1.5e-07 Score=63.27 Aligned_cols=112 Identities=28% Similarity=0.452 Sum_probs=86.8
Q ss_pred cCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095 7 FNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI 83 (128)
Q Consensus 7 ~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v 83 (128)
...+.+.|.|++|++|..+. ....+.||+++++.+.+. .+.+|+....+.+|.+.+...|+ -++ ....+.+.+
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~sp---~~k~Lq~tv 341 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QSP---PGKYLQGTV 341 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cCC---CccEEEEEE
Confidence 46789999999999998553 234678999999986553 35678888888899888887777 222 346788888
Q ss_pred E-EccCCCCCceeEEEEEecccccccc-cccceEecccccC
Q psy12095 84 F-DFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQSVEG 122 (128)
Q Consensus 84 ~-~~~~~~~~~~lG~~~~~l~~l~~~~-~~~~w~~L~~~~~ 122 (128)
| |+..+.++.|+|.+++-+.++.... ....||+|.+...
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 8 4667777889999999999997665 6679999987653
No 127
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.46 E-value=7.9e-07 Score=51.59 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCCeEEEEEeC-CCCCeeecceeecCCCCeecceEEEcccCC-------------CCCCCCeEEEEEEEccC--------
Q psy12095 31 SDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKGVPY-------------ADAMNKTLVFAIFDFDR-------- 88 (128)
Q Consensus 31 ~~p~~~~~~~~-~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~-------------~~~~~~~l~v~v~~~~~-------- 88 (128)
.|+|+.+.+.- .+....+|+++.++..|.|+..+.|. ++. +-++...+.+++|+...
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 48999998643 23345679999999999999999987 331 11234679999998653
Q ss_pred --CCCCceeEEEEEecccccc-cccccceEec
Q psy12095 89 --FSKHDQIGEVKVALCQIDL-AQTIEEWREL 117 (128)
Q Consensus 89 --~~~~~~lG~~~~~l~~l~~-~~~~~~w~~L 117 (128)
..+|-.+|.+.+++.++.. ..+..+||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2345589999999998744 4567899985
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=98.23 E-value=2e-06 Score=62.48 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=78.1
Q ss_pred EEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEE
Q psy12095 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFA 82 (128)
Q Consensus 3 ~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~ 82 (128)
++.++=.|.+.++++.|+ ++ ..|+|+.+.. .+.+.++|...+++.+|.||+..-|. +...+. ...++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~--~g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~--~~~~~~ 114 (644)
T PLN02964 47 VSAEDFSGIALLTLVGAE----MK---FKDKWLACVS--FGEQTFRTETSDSTDKPVWNSEKKLL-LEKNGP--HLARIS 114 (644)
T ss_pred eecccccCeEEEEeehhh----hc---cCCcEEEEEE--ecceeeeeccccccCCcccchhhceE-eccCCc--ceEEEE
Confidence 345556778888888876 22 3488765533 37889999999999999999887776 555443 346999
Q ss_pred EEEccCCCCCceeEEEEEeccccccccccc--ceEecccccC
Q psy12095 83 IFDFDRFSKHDQIGEVKVALCQIDLAQTIE--EWRELQSVEG 122 (128)
Q Consensus 83 v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~--~w~~L~~~~~ 122 (128)
||+.+.++.++.+|.++++|.++...+..+ .-|++.++.+
T Consensus 115 ~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg 156 (644)
T PLN02964 115 VFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS 156 (644)
T ss_pred EEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999888775443322 2355555443
No 129
>KOG3837|consensus
Probab=98.17 E-value=1.8e-06 Score=58.98 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=86.9
Q ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEE--eCCCCCeeecceeecCCCCeecceEEEcccCCCC-C--------CC
Q psy12095 8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVFKGVPYAD-A--------MN 76 (128)
Q Consensus 8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~-~--------~~ 76 (128)
+...|.+.|+++++++..+-....|.|+++.. .++..+..+|.+++.+.+|.|++.|-+. +..-. . .+
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKR 443 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHh
Confidence 56677888888887764432445678888765 2334567889999999999999998876 44310 1 12
Q ss_pred CeEEEEEEEccCC-CCCceeEEEEEecccccccccccceEecccccCCCCc
Q psy12095 77 KTLVFAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ 126 (128)
Q Consensus 77 ~~l~v~v~~~~~~-~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~ 126 (128)
..+.|++|+++.+ ..|+++|.+.+.|.-+.........++|.+..+..|.
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGG 494 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGG 494 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCC
Confidence 5689999998864 6778999999999998877777889998776554443
No 130
>KOG1265|consensus
Probab=98.13 E-value=8.3e-06 Score=60.50 Aligned_cols=91 Identities=30% Similarity=0.502 Sum_probs=70.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEe--CCCC--Ceeecceee-cCCCCeec-ceEEEcccCCCCCCCCeEEEE
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL--PDKK--KKFETKVHR-KTLNPVFN-ETFVFKGVPYADAMNKTLVFA 82 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~~~~--~~~~t~~~~-~~~~p~~~-e~~~f~~~~~~~~~~~~l~v~ 82 (128)
++.+.|+|++|+.|..+. ...||.+.+. |... +.++|++.. ++++|.|+ +.|.|.-+...++ ..|+|.
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia 775 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA 775 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence 467899999999998774 4689988774 3322 356788876 78899999 7888886655554 569999
Q ss_pred EEEccCCCCCceeEEEEEecccccccc
Q psy12095 83 IFDFDRFSKHDQIGEVKVALCQIDLAQ 109 (128)
Q Consensus 83 v~~~~~~~~~~~lG~~~~~l~~l~~~~ 109 (128)
||+.+ ++++|+=.+++..+..|.
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred eeccC----CceeeeeccchhcccCcc
Confidence 99866 679999999999887764
No 131
>KOG1327|consensus
Probab=98.06 E-value=3.4e-05 Score=54.68 Aligned_cols=104 Identities=24% Similarity=0.386 Sum_probs=73.0
Q ss_pred EEEecCCCCCCCCCCCCCeEEEEEeC-CCC--CeeecceeecCCCCeecceEEE-cccCCCCCCCCeEEEEEEEccCCCC
Q psy12095 16 VIQAEDLPALDMGGTSDPYVKVYLLP-DKK--KKFETKVHRKTLNPVFNETFVF-KGVPYADAMNKTLVFAIFDFDRFSK 91 (128)
Q Consensus 16 i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~--~~~~t~~~~~~~~p~~~e~~~f-~~~~~~~~~~~~l~v~v~~~~~~~~ 91 (128)
..+|.+|.+++..++++||..+.-.. ++. ...+|.+.+++++|.|.+...- ..++..+ ....+.+.+|+++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~-~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKD-GNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccC-CCCceEEEEeccCCCCC
Confidence 44578888888899999998886542 222 3578999999999999963211 1122111 23678899999999999
Q ss_pred CceeEEEEEecccccccccccceEecccc
Q psy12095 92 HDQIGEVKVALCQIDLAQTIEEWRELQSV 120 (128)
Q Consensus 92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~ 120 (128)
++++|.+..++..+........|...++.
T Consensus 221 ~~~ig~~~tt~~~~~~~~~~~~~~~~~~~ 249 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQEPGSPNQIMLINPK 249 (529)
T ss_pred cCceeEecccHHHhcccCCcccccccChh
Confidence 99999999998888653333345554444
No 132
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.64 E-value=0.0013 Score=40.69 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=63.4
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEE
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIF 84 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~ 84 (128)
...++|+|..+.++... ....+.|+.+.+.-++.. ...|+....+..+.|+|...|+ +...++. ...|.|.+|
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence 34789999999998762 234567777766432221 2345444445679999999998 7765543 356899999
Q ss_pred EccCCC----------------CCceeEEEEEecccc
Q psy12095 85 DFDRFS----------------KHDQIGEVKVALCQI 105 (128)
Q Consensus 85 ~~~~~~----------------~~~~lG~~~~~l~~l 105 (128)
+..... ....||.+.++|-+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 865322 245899999998874
No 133
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.58 E-value=0.0024 Score=38.95 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=61.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFD 85 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~ 85 (128)
..++|+|..+.++.... ..+.|+.+.+.-++.. ...|..+.. .++.|+|...|+ +...++. ...|.|.+|+
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEEE
Confidence 46889999999887542 4578888876433321 112333333 578999999998 7765543 3568999998
Q ss_pred ccCCC----CCceeEEEEEecccc
Q psy12095 86 FDRFS----KHDQIGEVKVALCQI 105 (128)
Q Consensus 86 ~~~~~----~~~~lG~~~~~l~~l 105 (128)
..... ....+|.+.++|-+.
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECC
Confidence 66421 224699999998874
No 134
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.54 E-value=0.0017 Score=44.34 Aligned_cols=102 Identities=18% Similarity=0.302 Sum_probs=73.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCC-----CCCCCCeEEEEEEEc
Q psy12095 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY-----ADAMNKTLVFAIFDF 86 (128)
Q Consensus 12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~-----~~~~~~~l~v~v~~~ 86 (128)
+.+.|.+|++.+... .....+...+ ......|..+..+-.|.|+....+. +.. -...+..|++.+|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~---ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF---NGESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe---CCceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEe
Confidence 568899999987652 2234555555 3455668888888889999877776 221 122347799999998
Q ss_pred c-CCCCCceeEEEEEecccc---ccc--ccccceEecccc
Q psy12095 87 D-RFSKHDQIGEVKVALCQI---DLA--QTIEEWRELQSV 120 (128)
Q Consensus 87 ~-~~~~~~~lG~~~~~l~~l---~~~--~~~~~w~~L~~~ 120 (128)
+ ..+..+.+|.+.++|... ..+ .....||.|..-
T Consensus 75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred cCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 8 567778999999999988 554 445689999776
No 135
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.34 E-value=0.0051 Score=37.36 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=61.6
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCC-CCCeEEEEEE
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADA-MNKTLVFAIF 84 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~ 84 (128)
...++|++....+..... ....+.|+.+.+.-++. ....|.....+.++.|+|...|+ +...++ ....|.+.+|
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~ 84 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY 84 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence 346778888877765511 23456777776643332 12233333334678999999998 555443 3466899999
Q ss_pred EccCCC--CCceeEEEEEecccc
Q psy12095 85 DFDRFS--KHDQIGEVKVALCQI 105 (128)
Q Consensus 85 ~~~~~~--~~~~lG~~~~~l~~l 105 (128)
+..... .+..+|.+.++|-+.
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEcc
Confidence 877543 457899999998875
No 136
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.26 E-value=0.0031 Score=38.49 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=54.3
Q ss_pred CCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEEccCCCCCceeEEEEEeccc
Q psy12095 29 GTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQ 104 (128)
Q Consensus 29 ~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 104 (128)
..++.|+.+.+.-++.. ...|.....+..+.|||...|+ +...++. ...|.|++|+....++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 35678888877433321 2245555556678899999998 7766643 35699999998765566799999999877
Q ss_pred c
Q psy12095 105 I 105 (128)
Q Consensus 105 l 105 (128)
.
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 5
No 137
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.11 E-value=0.01 Score=36.72 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceee----cCCCCeecceEEEcccCCCCC-CCCeEE
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHR----KTLNPVFNETFVFKGVPYADA-MNKTLV 80 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~----~~~~p~~~e~~~f~~~~~~~~-~~~~l~ 80 (128)
...+.|+|..+++++..-.....+.|+.+.+.-++.. ...|+... ....+.|+|...|+ +...++ ....|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence 4578899999999986643345678888876433221 12233211 12246799999998 655443 346699
Q ss_pred EEEEEccCCC---------CCceeEEEEEecccc
Q psy12095 81 FAIFDFDRFS---------KHDQIGEVKVALCQI 105 (128)
Q Consensus 81 v~v~~~~~~~---------~~~~lG~~~~~l~~l 105 (128)
+.+|+..... .+..+|.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999876543 356899999998875
No 138
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.89 E-value=0.045 Score=34.12 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEE
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFD 85 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~ 85 (128)
+..++|+|..+..+.. +.......|+.+.+.-++.. ..+|.....+.++.|+|...|+ +...++. ...|.+.||+
T Consensus 9 ~~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence 4478888888764332 22333456777655322211 2235555555679999999998 7766643 3568999998
Q ss_pred ccCCC----------------CCceeEEEEEecccc
Q psy12095 86 FDRFS----------------KHDQIGEVKVALCQI 105 (128)
Q Consensus 86 ~~~~~----------------~~~~lG~~~~~l~~l 105 (128)
...-. .+..||.+.+.|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 53211 245789899988774
No 139
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.74 E-value=0.035 Score=35.03 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=44.6
Q ss_pred eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC----CCCceeEEEEEecc
Q psy12095 46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALC 103 (128)
Q Consensus 46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~----~~~~~lG~~~~~l~ 103 (128)
..+|.+...+.+|.|+|++-+. ++.+......|.+.+++.... .....+|-+.++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 5667777889999999999999 998888788899998775421 22357898888874
No 140
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=96.63 E-value=0.077 Score=33.36 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=44.5
Q ss_pred eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC-C-CceeEEEEEecc
Q psy12095 46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS-K-HDQIGEVKVALC 103 (128)
Q Consensus 46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~-~-~~~lG~~~~~l~ 103 (128)
..+|.+...+.+|.|+|++-+. ++.+......|.+.+++...-. + ...+|-+.++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 5677788889999999999999 9888877888988887754321 2 257998888874
No 141
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.44 E-value=0.084 Score=31.53 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=41.6
Q ss_pred ecceeecC-CCCeecceEEEcccCCCCCC-CCeEEEEEEEccCCCCC----ceeEEEEEecccc
Q psy12095 48 ETKVHRKT-LNPVFNETFVFKGVPYADAM-NKTLVFAIFDFDRFSKH----DQIGEVKVALCQI 105 (128)
Q Consensus 48 ~t~~~~~~-~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~~~~~~~----~~lG~~~~~l~~l 105 (128)
.|.....+ ..+.|+|...|. +...++. ...|.+++|........ ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56666655 789999999998 7665543 45689999998775555 6999999998876
No 142
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.21 E-value=0.12 Score=30.78 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=62.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccC-C----CCCCCCeEEEE
Q psy12095 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVP-Y----ADAMNKTLVFA 82 (128)
Q Consensus 9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~-~----~~~~~~~l~v~ 82 (128)
...+.+.|.+..+++.. ....++.............|.... .+....|++.|.+.+-. . .......+.+.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 34677888888877652 222333333211111123344333 45568999999887311 1 11334568888
Q ss_pred EEEccCCCCCceeEEEEEeccccccc--ccccceEecccc
Q psy12095 83 IFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQSV 120 (128)
Q Consensus 83 v~~~~~~~~~~~lG~~~~~l~~l~~~--~~~~~w~~L~~~ 120 (128)
|+....-++...+|.+.+.|+++... .....-++|...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~ 121 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC 121 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC
Confidence 88874333336899999999998663 344455556554
No 143
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.11 E-value=0.15 Score=31.08 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=66.3
Q ss_pred ecCCCEEEEEEEEecCCCCCCC--CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCC--------
Q psy12095 6 DFNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAM-------- 75 (128)
Q Consensus 6 ~~~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-------- 75 (128)
.+....|.+.|..++-....-. .+..+..+.+.+. -+.++++|+.+..+.+|.|++.|.|. +......
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTL 82 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEE-ecccccccccchhHh
Confidence 4566788899988764432211 1344555555543 24578999999999999999999998 6654311
Q ss_pred ---CCeEEEEEEEccCCCCCceeEEEEEecccc
Q psy12095 76 ---NKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105 (128)
Q Consensus 76 ---~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l 105 (128)
...|.+.+...+..+...++|.-.+.-...
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 145777777777666667888777775544
No 144
>KOG1452|consensus
Probab=95.98 E-value=0.062 Score=36.38 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=55.6
Q ss_pred ecCCCEEEEEEEEecCCCCCC--CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095 6 DFNANSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI 83 (128)
Q Consensus 6 ~~~~~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v 83 (128)
-...|.|.+.++.+++|.... .+-..+.||.+.. +.....+|.+........|.|+|..+ +.. ...+.+-|
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~vrs~~~~f~w~e~F~~D-vv~----~~vl~~lv 119 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRVRSSGPGFAWAEDFKHD-VVN----IEVLHYLV 119 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeee--cccCccccccccCCCCccchhhceee-ccc----ceeeeEEE
Confidence 345678889999999997432 2445677888765 34445556666666678899999988 332 23567778
Q ss_pred EEccCCCCCce
Q psy12095 84 FDFDRFSKHDQ 94 (128)
Q Consensus 84 ~~~~~~~~~~~ 94 (128)
|+++.-.++++
T Consensus 120 ySW~pq~RHKL 130 (442)
T KOG1452|consen 120 YSWPPQRRHKL 130 (442)
T ss_pred eecCchhhccc
Confidence 88776655554
No 145
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.83 E-value=0.061 Score=33.62 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=36.2
Q ss_pred eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC-C--CceeEEEEEeccc
Q psy12095 46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS-K--HDQIGEVKVALCQ 104 (128)
Q Consensus 46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~-~--~~~lG~~~~~l~~ 104 (128)
...|.+..++..|.|+|++-+. ++........|.+++++...-. + ...+|-+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3456666678899999999998 8877666778999998866422 1 1689999999977
No 146
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.92 E-value=0.33 Score=27.21 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=47.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEEc
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFDF 86 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~ 86 (128)
.+.+.+...++..........+.|+.+.+.-++.. ...|.....+..+.|+|...|+ +...++. ...+.+.+|+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence 36666777766654432223478888877433321 2234444445568999999998 7665543 35688999985
Q ss_pred c
Q psy12095 87 D 87 (128)
Q Consensus 87 ~ 87 (128)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 4
No 147
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=94.50 E-value=0.26 Score=30.69 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=41.1
Q ss_pred cceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC-----CCCceeEEEEEeccc
Q psy12095 49 TKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF-----SKHDQIGEVKVALCQ 104 (128)
Q Consensus 49 t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~-----~~~~~lG~~~~~l~~ 104 (128)
+.++..+..|.|++++-+. ++........|.+++++...- .....+|-+.++|-.
T Consensus 56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4455555899999999998 776554567799999886532 335689999999875
No 148
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=93.87 E-value=0.61 Score=29.19 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=42.6
Q ss_pred eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC------CCceeEEEEEecc
Q psy12095 46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS------KHDQIGEVKVALC 103 (128)
Q Consensus 46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~------~~~~lG~~~~~l~ 103 (128)
...|.+..++.+|.|.+++-.. ++..-.....|.++.++.+--. ....+|-+.++|-
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 5667788889999999999888 8776656677888888744321 1346898888874
No 149
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=91.16 E-value=2.6 Score=26.60 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=43.4
Q ss_pred eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC--C-------CCCceeEEEEEeccc
Q psy12095 46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR--F-------SKHDQIGEVKVALCQ 104 (128)
Q Consensus 46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~--~-------~~~~~lG~~~~~l~~ 104 (128)
...|.+..++.+|.|.+++-+. ++........|.++.++.+- . .....+|-+.++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 5567788888999999999888 87766566779999988651 1 113468988888754
No 150
>KOG1327|consensus
Probab=90.38 E-value=1.3 Score=32.33 Aligned_cols=59 Identities=31% Similarity=0.521 Sum_probs=44.1
Q ss_pred eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC----CCCCceeEEEEEecccccc
Q psy12095 46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR----FSKHDQIGEVKVALCQIDL 107 (128)
Q Consensus 46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~----~~~~~~lG~~~~~l~~l~~ 107 (128)
..+|..+....+|.|.+.|... ...+. ...+++.+++.+. ....+|+|.+.+.+..+..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~-y~fE~--vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQ-YRFEK--VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccceeeeeccCCccceeeechh-heeee--eeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 3478889999999999988876 44333 2578888888664 4566799999998877643
No 151
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.30 E-value=2 Score=23.88 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccc
Q psy12095 31 SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105 (128)
Q Consensus 31 ~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l 105 (128)
.+..+.+.++ ......|.-. ...+..|++.|.++ +. ....+.|.||-++- ....|-..+.|++.
T Consensus 9 ~eV~avLklD--n~~VgqT~Wk-~~s~q~WDQ~Fti~-Ld----RsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLD--NTVVGQTQWK-PKSNQAWDQSFTLE-LE----RSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEc--CeEEeecccc-ccccccccceeEEE-ee----cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 4666777763 2222223322 22578999999988 43 24679999988763 34667777888774
No 152
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.06 E-value=3.3 Score=25.60 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCCCeEEEEEeCCCCCeeecceee--cCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q psy12095 30 TSDPYVKVYLLPDKKKKFETKVHR--KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 107 (128)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~t~~~~--~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~ 107 (128)
...-|+++.+ ++....+|.... ....-.|++.|.+. +.. ....|.+.||.... ..+..|+.+.+++-....
T Consensus 36 ~~~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~-i~~---~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQ-ITR---WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEE-Eec---CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 3466777776 344455555544 34456778998887 432 13579999999887 667899999999776533
Q ss_pred ccc----ccceEeccc
Q psy12095 108 AQT----IEEWRELQS 119 (128)
Q Consensus 108 ~~~----~~~w~~L~~ 119 (128)
... ...|+....
T Consensus 109 ~~~~~~~~~~~~eFsS 124 (168)
T PF15625_consen 109 HTSTDNVPLEEYEFSS 124 (168)
T ss_pred cccccCCceEeEEEcC
Confidence 311 345665544
No 153
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=85.43 E-value=10 Score=26.54 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=60.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF 89 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~ 89 (128)
..|.|.|.+-.++. .....|+.+.. +.....|..+..+..-..+-..... +...+ .+.+|++.++-....
T Consensus 58 F~LLVeI~EI~~i~-----k~khiyIef~~---Gr~d~TT~~IpTsKK~RI~IqqRV~-IkIRQ-cDnTLkI~lfKKkLv 127 (508)
T PTZ00447 58 FYLLVKINEIFNIN-----KYKHIYIIFST---DKYDFTTDEIPTNKKNRIHIDQRVD-IKIRQ-CDETLRVDLFTTKLT 127 (508)
T ss_pred eeEEEEehhhhccc-----cceeEEEEEEc---CceEEEccccccCcCceEEEeeeee-eeeee-cCceEEEEEEecccc
Confidence 34556666544432 23356666655 3444555555544444444222233 33333 347899999987765
Q ss_pred CCCceeEEEEEeccc--ccccccccceEecccccCCCCc
Q psy12095 90 SKHDQIGEVKVALCQ--IDLAQTIEEWRELQSVEGEGGQ 126 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~--l~~~~~~~~w~~L~~~~~~~~~ 126 (128)
+ ...+|.+.+.+.. +...-+.+.||.+...+++.+.
T Consensus 128 k-k~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cR 165 (508)
T PTZ00447 128 K-KVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICK 165 (508)
T ss_pred c-eeEEEEEEecccHHHHhccCCccceEEEecCCceeee
Confidence 4 4679998888764 2333345689999776665544
No 154
>KOG0906|consensus
Probab=82.86 E-value=14 Score=28.29 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=49.0
Q ss_pred CCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEEccCCCCCceeEEEEEeccc
Q psy12095 29 GTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQ 104 (128)
Q Consensus 29 ~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 104 (128)
.+++.|+...+...+.. -.+|+.+.....-.|||-..+. +...++. ...+.|.+|+....+.-.++|...+.+..
T Consensus 45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhheeeeeccCCcccCCccccccccCCccchhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 34567777666444332 1234444433344599988887 6655543 35699999998877777799998888764
No 155
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=80.08 E-value=11 Score=23.18 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=53.1
Q ss_pred EEEEEecCCCCCCCCCCCCCeEEEEEeCC-------CCC-eeecceeec-----CCCCeecceEEEcccCCCCC-CCCeE
Q psy12095 14 VTVIQAEDLPALDMGGTSDPYVKVYLLPD-------KKK-KFETKVHRK-----TLNPVFNETFVFKGVPYADA-MNKTL 79 (128)
Q Consensus 14 v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-------~~~-~~~t~~~~~-----~~~p~~~e~~~f~~~~~~~~-~~~~l 79 (128)
=.|..|.+.. ..+.||+..+.-. +.. ...|.+... +..-.|+..|.+. +..... ....|
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~-~~~~~~~gwP~L 78 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLH-FKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEE-EEeCCCCCCceE
Confidence 3566777553 2367888877421 122 334444432 2346788777665 333332 24679
Q ss_pred EEEEEEccCCCCCceeEEEEEecccc
Q psy12095 80 VFAIFDFDRFSKHDQIGEVKVALCQI 105 (128)
Q Consensus 80 ~v~v~~~~~~~~~~~lG~~~~~l~~l 105 (128)
.++||..+..+++...|-..+.|...
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPTQ 104 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCCC
Confidence 99999999999999999877766443
No 156
>KOG1329|consensus
Probab=78.82 E-value=3.2 Score=32.28 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=58.3
Q ss_pred CCCeEEEEEeCCCCCeeecceeecC-CCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccc
Q psy12095 31 SDPYVKVYLLPDKKKKFETKVHRKT-LNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109 (128)
Q Consensus 31 ~~p~~~~~~~~~~~~~~~t~~~~~~-~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~ 109 (128)
.++|+.+.+. .....+|...... -.|.|.+.|... ... ....+.+.+-+.+..+....+|.+.++...+..+.
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~---~~h-~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~ 211 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIG---FAH-KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH 211 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhcccc---ccc-cccEEEEeecCCccccceeEEEEeccchhhhhccc
Confidence 3677777762 2223345555554 569999987654 222 12467788777777666778999999988888888
Q ss_pred cccceEeccccc
Q psy12095 110 TIEEWRELQSVE 121 (128)
Q Consensus 110 ~~~~w~~L~~~~ 121 (128)
...+|+++....
T Consensus 212 ~~~~~~~Il~~d 223 (887)
T KOG1329|consen 212 RIGGWFPILDND 223 (887)
T ss_pred cccceeeeeccC
Confidence 888999986654
No 157
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.73 E-value=4.4 Score=23.13 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=33.8
Q ss_pred eecceeecCCCCeecceEEEcccCCCC-----CCCCeEEEEEEEccCCCCCceeEEEEEecccccccc--cccceEeccc
Q psy12095 47 FETKVHRKTLNPVFNETFVFKGVPYAD-----AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQS 119 (128)
Q Consensus 47 ~~t~~~~~~~~p~~~e~~~f~~~~~~~-----~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~--~~~~w~~L~~ 119 (128)
+.|.++. ..+|.++.+..|. +..++ +....+.+++++.-. ..-+.+|.+++++..+.... ....-..|.+
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g 89 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATLVG 89 (107)
T ss_dssp EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE-B
T ss_pred eccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEEec
Confidence 4455554 6899999888887 55433 123678999988663 33568999999998875332 2334444443
Q ss_pred c
Q psy12095 120 V 120 (128)
Q Consensus 120 ~ 120 (128)
.
T Consensus 90 ~ 90 (107)
T PF11618_consen 90 V 90 (107)
T ss_dssp S
T ss_pred c
Confidence 3
No 158
>KOG0694|consensus
Probab=62.33 E-value=1.3 Score=33.23 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=47.8
Q ss_pred CCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccc-
Q psy12095 30 TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA- 108 (128)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~- 108 (128)
..+||+-+.+... +...+.+...+..|.|+++|... +.. ...+.|.++.......+.+...+.+..+.++..
T Consensus 27 al~~y~~v~vk~~--~~~~~~~~~~~~~~~~~~~F~~~-v~~----~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~ 99 (694)
T KOG0694|consen 27 ALQPYLAVELKVK--QGAENMTKVELRIPELRETFHVE-VVA----GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLA 99 (694)
T ss_pred hhhhhheecccee--ecccccCCCCCCCchhhhheeee-eec----CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHh
Confidence 4578877766321 12223335578899999999988 543 356888888776554444444444433333321
Q ss_pred ccccceEecccc
Q psy12095 109 QTIEEWRELQSV 120 (128)
Q Consensus 109 ~~~~~w~~L~~~ 120 (128)
.....|.++.+.
T Consensus 100 ~~~~~w~~~~~~ 111 (694)
T KOG0694|consen 100 LEQRLWVLIEEL 111 (694)
T ss_pred hhhhhccccccc
Confidence 122357665543
No 159
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=59.96 E-value=37 Score=20.68 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=51.1
Q ss_pred ecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC----eeeccee--ecCCCCeecceEEEcccCCCCCC-CCe
Q psy12095 6 DFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK----KFETKVH--RKTLNPVFNETFVFKGVPYADAM-NKT 78 (128)
Q Consensus 6 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~----~~~t~~~--~~~~~p~~~e~~~f~~~~~~~~~-~~~ 78 (128)
.+....|.|.|.+.- +... ....+||+.+++...... .+.|.+. .....-.|+...++. .+.+.+. +..
T Consensus 9 ~~g~t~l~v~Iekig-lkda--~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lq-tple~lp~Gaa 84 (147)
T PF14186_consen 9 EPGMTYLSVFIEKIG-LKDA--SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQ-TPLEKLPKGAA 84 (147)
T ss_dssp -TT--EEEEEEEEEE--TTG--GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-S-S-GGGS-TT-E
T ss_pred CCCCceEEEEEEEEE-ECCh--HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEc-CCHHHCCCceE
Confidence 345567778777643 5433 345689999998643322 3445543 233345677777776 5544433 466
Q ss_pred EEEEEEEccCCCCC-ceeEEEEEeccccccc
Q psy12095 79 LVFAIFDFDRFSKH-DQIGEVKVALCQIDLA 108 (128)
Q Consensus 79 l~v~v~~~~~~~~~-~~lG~~~~~l~~l~~~ 108 (128)
|.+++.++..-.+. ...|.+.+.++++..+
T Consensus 85 i~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 85 IFFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 88888776643322 2467788889888776
No 160
>KOG4028|consensus
Probab=51.30 E-value=30 Score=20.61 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEeccc
Q psy12095 76 NKTLVFAIFDFDRFSKHDQIGEVKVALCQ 104 (128)
Q Consensus 76 ~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 104 (128)
...+.+.+|+++++++.+.-|-..+-|..
T Consensus 73 wprl~~qiw~~dnfgr~eiagyg~~~lps 101 (175)
T KOG4028|consen 73 WPRLHFQIWHHDNFGRCEIAGYGFCHLPS 101 (175)
T ss_pred CceeeeeeeecCcccceeecccceEeccC
Confidence 36799999999999999988876655443
No 161
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=46.11 E-value=44 Score=17.71 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.1
Q ss_pred eEEEEEEEccCCCCCceeEEEEEe
Q psy12095 78 TLVFAIFDFDRFSKHDQIGEVKVA 101 (128)
Q Consensus 78 ~l~v~v~~~~~~~~~~~lG~~~~~ 101 (128)
.+.|.+|+.+.+..|++++.+...
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEEC
Confidence 467999999987888898876653
No 162
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=35.96 E-value=1.7e+02 Score=21.37 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=30.4
Q ss_pred CeEEEEEEEccC-----C-CCCceeEEEEEeccccc-cc---ccccceEecccccC
Q psy12095 77 KTLVFAIFDFDR-----F-SKHDQIGEVKVALCQID-LA---QTIEEWRELQSVEG 122 (128)
Q Consensus 77 ~~l~v~v~~~~~-----~-~~~~~lG~~~~~l~~l~-~~---~~~~~w~~L~~~~~ 122 (128)
..|+|.||.-.. + ...++||.+.++|+.-. .+ --+++|..+-....
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~ 150 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ 150 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC
Confidence 468999997332 2 45679999999987431 12 22467999866543
No 163
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=32.15 E-value=1.1e+02 Score=17.81 Aligned_cols=93 Identities=15% Similarity=0.270 Sum_probs=43.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC-C
Q psy12095 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR-F 89 (128)
Q Consensus 11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~-~ 89 (128)
.|.+.-+.-.+++..+..+...||+.++-. +.....+........-.-...+.+. +...-.-...+.|.+++... .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNG--GKKVFSTSKSYEDPKSYEQDSVIIE-LPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEET--TEEEEETCCTCCCCCEEETTCEEEE-EEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECC--CccEEEeccceeccccccceeEEEE-eCCCCeEeCCEEEEEEeCCCcc
Confidence 344444444556655445567899999751 1112111111111110011222222 11110002458899998773 4
Q ss_pred CCCceeEEEEEeccccc
Q psy12095 90 SKHDQIGEVKVALCQID 106 (128)
Q Consensus 90 ~~~~~lG~~~~~l~~l~ 106 (128)
..++.+.++++--.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 45667888888754443
No 164
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=31.03 E-value=1.3e+02 Score=18.28 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred CCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCC---------CCCCCeEEEEEEEccCCCCCceeEEEEE
Q psy12095 30 TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYA---------DAMNKTLVFAIFDFDRFSKHDQIGEVKV 100 (128)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~---------~~~~~~l~v~v~~~~~~~~~~~lG~~~~ 100 (128)
..+.|..+.+. .+..+|+....-..-.+++.|.|..+-.. .++...+.+++++..... ++.++..+-
T Consensus 19 ~~~vyL~v~~l---g~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~ 94 (140)
T PF14909_consen 19 KGDVYLSVCIL---GQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEE 94 (140)
T ss_pred CCCEEEEEEEc---ccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEec
Confidence 45889999884 34566777776667778899988632211 123467889999877644 678888887
Q ss_pred eccccc
Q psy12095 101 ALCQID 106 (128)
Q Consensus 101 ~l~~l~ 106 (128)
.+.++.
T Consensus 95 n~rDfL 100 (140)
T PF14909_consen 95 NTRDFL 100 (140)
T ss_pred cccceE
Confidence 777753
No 165
>PF13619 KTSC: KTSC domain
Probab=30.44 E-value=71 Score=15.84 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.8
Q ss_pred eEEEecCCCEEEEEEEEe
Q psy12095 2 KLEYDFNANSLSVTVIQA 19 (128)
Q Consensus 2 ~~~y~~~~~~l~v~i~~a 19 (128)
++.|++....|.|....+
T Consensus 8 ~v~Yd~~~~~L~V~F~~G 25 (60)
T PF13619_consen 8 SVGYDPETRTLEVEFKSG 25 (60)
T ss_pred EEeECCCCCEEEEEEcCC
Confidence 578999999999987554
No 166
>KOG4027|consensus
Probab=30.23 E-value=1.4e+02 Score=18.61 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=24.0
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecc
Q psy12095 75 MNKTLVFAIFDFDRFSKHDQIGEVKVALC 103 (128)
Q Consensus 75 ~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 103 (128)
.+..|.+.||..+.+++|-+.|-..+.+.
T Consensus 81 gWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 81 GWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred CCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 45779999999999999999987776654
No 167
>KOG0904|consensus
Probab=25.11 E-value=3.9e+02 Score=21.97 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=49.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCCeEEEEE--eCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCC-CeEEEEE
Q psy12095 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYL--LPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMN-KTLVFAI 83 (128)
Q Consensus 10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~-~~l~v~v 83 (128)
.-++|+++++.++.. ....+-++.+.. .-+.. ....|..+.....|.||+...|+ +...++.. ..+-+.|
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFD-I~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFD-IYIKDLPRMARLCLAI 418 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEee-eecCCCChhhhheeee
Confidence 456777777655432 223344444432 11111 11234444456789999999998 77655433 3355666
Q ss_pred EEcc----------------CCCCCceeEEEEEecccc
Q psy12095 84 FDFD----------------RFSKHDQIGEVKVALCQI 105 (128)
Q Consensus 84 ~~~~----------------~~~~~~~lG~~~~~l~~l 105 (128)
+.-. .-+.+-.+|.+.+.|.+.
T Consensus 419 ~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~ 456 (1076)
T KOG0904|consen 419 YAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDH 456 (1076)
T ss_pred eEeechhccccccchhhhhccccccCceEEEeeeeeec
Confidence 6531 112223577777776664
No 168
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=22.46 E-value=1e+02 Score=17.51 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=20.0
Q ss_pred CCeEEEEEEEccC---CCCCceeEEEEEecccc
Q psy12095 76 NKTLVFAIFDFDR---FSKHDQIGEVKVALCQI 105 (128)
Q Consensus 76 ~~~l~v~v~~~~~---~~~~~~lG~~~~~l~~l 105 (128)
...|.+.++.... ......+|.+.+++.+.
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~ 60 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEA 60 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHH
Confidence 3456676665432 34566899999998765
No 169
>KOG3508|consensus
Probab=20.30 E-value=67 Score=25.80 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=37.4
Q ss_pred ecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095 53 RKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121 (128)
Q Consensus 53 ~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~ 121 (128)
....+-.|.|.|.|..++............+-.+.+....+.+|-+. ....+......++|+.+....
T Consensus 138 ~~~s~vl~gE~~~f~~lPpl~~~~~~~~~~i~~~~k~~~n~~l~~~~-~~~f~~~~~~~d~w~~v~t~~ 205 (932)
T KOG3508|consen 138 CGTSNVLWGENFLFPVLPPLPVVDVLRVRAILPKKKKPTNDEIGFVK-GDEFPVHRDLEDGWYWVTTSR 205 (932)
T ss_pred cccchhccccccccccCCccchhhhhhhhhhhhhhccCccccccccc-chhheecccccceeEEeeccc
Confidence 34667899999999845543322222233333333334455777766 323333344557888876543
No 170
>PF05735 TSP_C: Thrombospondin C-terminal region; InterPro: IPR008859 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. The globular C-terminal domain is a beta sandwich of two curved antiparallel beta-sheets []. The fold is an elaboration of the jelly role topology, with strand B3-B7, B11 and B14-B15 forming the eight-stranded jelly roll motif. The function of the C-terminal domain is not yet known.; GO: 0005509 calcium ion binding, 0007155 cell adhesion, 0005576 extracellular region; PDB: 1UX6_A 1YO8_A 2RHP_A 3FBY_C.
Probab=20.07 E-value=1.1e+02 Score=19.74 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.9
Q ss_pred CeEEEecCCCEEEEEEEEecCC
Q psy12095 1 MKLEYDFNANSLSVTVIQAEDL 22 (128)
Q Consensus 1 ~~~~y~~~~~~l~v~i~~a~~l 22 (128)
+.|-|.|+.+.++|.+.++..+
T Consensus 139 ~~L~hrpsig~irv~~~~g~~l 160 (201)
T PF05735_consen 139 WHLVHRPSIGLIRVRVYEGKQL 160 (201)
T ss_dssp EEEEEETTTTEEEEEEEETTEE
T ss_pred EEEEEeCCccEEEEEEEeCCEE
Confidence 3578899999999999887654
Done!