RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12095
(128 letters)
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 191 bits (486), Expect = 3e-64
Identities = 59/125 (47%), Positives = 86/125 (68%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
+ Y+F ++L+V +++A++LPA D GTSDP+VK+YLLPDKK K ETKV RK LNP +
Sbjct: 17 FSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHW 76
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
NETF+F+G PY + + L + D+DRFS++D IGEV + L ++DL Q W++L+
Sbjct: 77 NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136
Query: 121 EGEGG 125
G
Sbjct: 137 GPSSG 141
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 188 bits (478), Expect = 7e-63
Identities = 84/121 (69%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVF
Sbjct: 33 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF 92
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
NE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 93 NEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151
Query: 121 E 121
E
Sbjct: 152 E 152
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 187 bits (476), Expect = 1e-62
Identities = 83/119 (69%), Positives = 94/119 (78%), Gaps = 1/119 (0%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVF
Sbjct: 25 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF 84
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
NE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 85 NEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 180 bits (459), Expect = 4e-60
Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV 59
LEY+F + V + +A LPA+D TSDPY+K+ +LP+KK K +T+V RKTL+P
Sbjct: 13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA 72
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQ 118
F+ETF F G+PY L F I FDRFS+ D IGEV + L I+L++ + RE+
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132
Query: 119 S 119
S
Sbjct: 133 S 133
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 180 bits (459), Expect = 4e-60
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
L YD + ++L T+I+A+ L +D G +DPYVK++LLP K K TK R T NP
Sbjct: 20 FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP 79
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
V+NET + G+ D KTL ++ D D+F ++ IGE + +L ++ Q L+
Sbjct: 80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
Query: 119 SV 120
V
Sbjct: 140 RV 141
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 177 bits (452), Expect = 6e-59
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPAL-------DMGGTSDPYVKVYLLPDKKKKFETKVHR 53
+YD N L+V VI+A DLP S+PYVK+ LLPD+K +T V R
Sbjct: 17 FSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR 76
Query: 54 KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 113
KT PVF E + F+ +P+ +A +TL+ + DFD+FS+H IG+V V LC++DL +
Sbjct: 77 KTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHW 135
Query: 114 WRELQ 118
W+ L
Sbjct: 136 WKALI 140
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 174 bits (443), Expect = 8e-58
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPV 59
L+YD L VT ++A + G D YV+ + + +T + ++ L+
Sbjct: 17 YCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT 73
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
+ E V + + TL + DRFS+H GE+++ L + +W EL++
Sbjct: 74 WEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132
Query: 120 VEGEGG 125
G
Sbjct: 133 SGPSSG 138
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 174 bits (444), Expect = 1e-57
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLN 57
L+Y+ SL V V + L D S+PYVK YLLPDK + K +T + R T+N
Sbjct: 14 FSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVN 73
Query: 58 PVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
P+++ET ++ +P + +TL F+++ RF ++ +GE ++ + L + ++ L
Sbjct: 74 PLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132
Query: 118 Q 118
Sbjct: 133 H 133
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 173 bits (441), Expect = 2e-57
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
KL + +L + V+ +DL D G +PYVK YLLPD K K +TK+ RKT NP
Sbjct: 12 KLSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPT 70
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
FNE V+ G + L ++ + ++ +G + + L +L++ +W +L +
Sbjct: 71 FNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 173 bits (441), Expect = 2e-57
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFET 49
+++ YD +L + ++QA +L D G SDP+VKVYLLP + + K T
Sbjct: 11 LQINYDLG--NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT 68
Query: 50 KVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
K +K+LNP +N+T ++K + M KTL ++D+DRFS +D +GEV + L
Sbjct: 69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128
Query: 110 TIEEWRELQSVE 121
W L+
Sbjct: 129 NTPRWYPLKEQT 140
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 171 bits (436), Expect = 1e-56
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
+KL +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P
Sbjct: 12 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 71
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRE 116
+N+TF++ V + + L ++D R + + +GE+ + L L W +
Sbjct: 72 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYK 130
Query: 117 LQS 119
LQ+
Sbjct: 131 LQT 133
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 174 bits (443), Expect = 6e-56
Identities = 85/123 (69%), Positives = 96/123 (78%), Gaps = 1/123 (0%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVF
Sbjct: 10 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF 69
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
NE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 70 NEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 128
Query: 121 EGE 123
E E
Sbjct: 129 EKE 131
Score = 124 bits (314), Expect = 2e-36
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNP 58
L Y A L+V +++A++L +D+GG SDPYVK++L+ + K KK +T + + TLNP
Sbjct: 141 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP 200
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
+NE+F F+ VP+ +V + D+D+ K+D IG+V V W ++
Sbjct: 201 YYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL--RHWSDM 256
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 168 bits (428), Expect = 1e-55
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
+KL +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P
Sbjct: 9 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 68
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRE 116
+N+TF++ V + + L ++D R + + +GE+ + L L W +
Sbjct: 69 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYK 127
Query: 117 LQ 118
LQ
Sbjct: 128 LQ 129
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 168 bits (427), Expect = 3e-55
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 6/126 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
+ + + N L V V +L A G SDPYV++YLLPDK++ + +T V +KTLNP
Sbjct: 15 LTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNP 73
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRE 116
VF+++F F V + +TL A+ + F D+ +G+V VAL +LA+ +W +
Sbjct: 74 VFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYD 132
Query: 117 LQSVEG 122
L G
Sbjct: 133 LTEDSG 138
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 164 bits (417), Expect = 1e-53
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNP 58
L+YD ++ +IQ +L AL ++V +LP + F T+ +
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTL 94
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-EEWREL 117
VFNE F + Y KTL + DR + +G +++L ++ + W L
Sbjct: 95 VFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153
Query: 118 QS 119
S
Sbjct: 154 LS 155
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 168 bits (428), Expect = 2e-53
Identities = 63/125 (50%), Positives = 83/125 (66%), Gaps = 3/125 (2%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
L Y + ++ L V ++QA DLPA D G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+F
Sbjct: 11 FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIF 70
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV--ALCQIDLAQTIEEWRELQ 118
NETF F VP A+ + L F+++DFDRFS+HD IG+V + L + WR++
Sbjct: 71 NETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 129
Query: 119 SVEGE 123
E
Sbjct: 130 EGGSE 134
Score = 124 bits (313), Expect = 3e-36
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 60
L Y A L+VT+I+A +L A+D+ G SDPYVK L+ + + KK +T + + TLNP +
Sbjct: 145 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
NE VF V N L A+ D+D ++ IG +V D E W E+
Sbjct: 205 NEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEM 259
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 160 bits (407), Expect = 3e-52
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
L+ + L VTV A++L +D G SDPYVK+ L+PD K K +TK R TLNP
Sbjct: 8 YLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQ 67
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
+NE+F FK P ++ L I+D+DR +++D +G + + ++ W +L +
Sbjct: 68 WNESFTFKLKP--SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPA-SGWYKLLN 124
Query: 120 VE 121
E
Sbjct: 125 QE 126
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 160 bits (406), Expect = 5e-52
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
++ + L V V A++L +D G SDPYVK+ L+PD K K +TK + +LNP
Sbjct: 23 YIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 82
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
+NETF F+ + +D ++ L I+D+D S++D +G + + ++ A + W +L S
Sbjct: 83 WNETFRFQ-LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLS 139
Query: 120 VE 121
E
Sbjct: 140 QE 141
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 154 bits (391), Expect = 2e-49
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 2 KLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
++ + L V VI+A L T PYVKVYLL + K +T++ RKTL+P
Sbjct: 22 QIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDP 81
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
++ ++ VF P K L ++ D+ R +G ++ L ++DL+ + W +L
Sbjct: 82 LYQQSLVFDESP----QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137
Query: 118 QSVE 121
Sbjct: 138 FPPS 141
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 151 bits (383), Expect = 2e-48
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
+L D L + +I+ + L + GT DPYVK+ L+P+ + +T+ +P
Sbjct: 19 RLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI-DLAQTIEEWREL 117
F+E F F V D K L+ +++ S+ IG + + + + I W L
Sbjct: 78 FHEHFFFP-VQEED-DQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135
Query: 118 QSVEGEG 124
E G
Sbjct: 136 LG-EHLG 141
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 145 bits (367), Expect = 9e-46
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
+ L Y L V +I+ L A+D G SDP+VK++L PD K K +T++ +KTLNP
Sbjct: 28 VSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNP 87
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
FNE F + + ++D K+L +++D+D +D IG ++ + + W E
Sbjct: 88 EFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL--KHWYECL 144
Query: 119 SVEGE 123
+ +
Sbjct: 145 KNKDK 149
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 142 bits (360), Expect = 4e-45
Identities = 42/119 (35%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
+ L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+ K+ K +T ++ LNP
Sbjct: 7 LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNP 66
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
+FNE+F F +P T++ + D D+ S++D IG++ ++ + W+++
Sbjct: 67 IFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEV--KHWKDM 122
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 141 bits (358), Expect = 1e-44
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPV 59
LE + N+ + V VI L D+ G SDPYV+V L +TK +K+LNP
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
+NE +F+ P L+F +FD +R ++ D +G+V V L + E
Sbjct: 73 WNEEILFRVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT 126
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 140 bits (355), Expect = 3e-44
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
+ L Y N+L+V V++A LP D+ G SDPYVKV L KK+ K +T V + T N
Sbjct: 21 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA 80
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
VFNE FVF +P ++ F + D +R S+++ IG + + W+E+
Sbjct: 81 VFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG--GHWKEIC 137
Query: 119 S 119
Sbjct: 138 D 138
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 135 bits (342), Expect = 2e-42
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 67
++ L V V A ++P G DP V V +KKK TK LNPV+NE F
Sbjct: 5 SSGMLRVIVESASNIPKTKFG-KPDPIVSVIFKDEKKK---TKKVDNELNPVWNEILEFD 60
Query: 68 GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ 126
+ +L + DF+ ++ IG VAL + Q+ +L S+ E GQ
Sbjct: 61 LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 136 bits (344), Expect = 3e-42
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 5 YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPVFN 61
++ + + V VI L D+ G SDPYV+V L +TK +K+LNP +N
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 62 ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
E +F+ +P ++F +FD +R ++ D +G+V V L + E
Sbjct: 63 EEILFRVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYT 114
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 135 bits (341), Expect = 5e-42
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNP 58
L Y A L+V +++A++L +D+GG SDPYVK++L+ + K KK +T + + TLNP
Sbjct: 16 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP 75
Query: 59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
+NE+F F+ VP+ +V + D+D+ K+D IG+V V W ++
Sbjct: 76 YYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL--RHWSDM 131
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 125 bits (317), Expect = 9e-39
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 8 NANSLSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF 64
+++ +V V++A + DM T DPYV++++ + T+ +NPV+NETF
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 65 VFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
F L + D + + + +G + + + + E V
Sbjct: 61 EF---ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 113
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 120 bits (302), Expect = 2e-36
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
L V ++ A+ L D DPYV++ +K P +NETF+F V
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFT-VSE 68
Query: 72 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQL 127
L IFD D ++ D +GE + L + + +I + E G++
Sbjct: 69 G---TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEI 122
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 116 bits (293), Expect = 5e-35
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
L V V++A DL A D G SDP+ + L D+ + T K LNP +N+ F F
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQ---THTVYKNLNPEWNKVFTFPIKD- 70
Query: 72 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 124
++ L +FD D D +G+V + L I Q L++ + E
Sbjct: 71 ---IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ 118
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 112 bits (283), Expect = 2e-33
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
+ +TV+ A++L D DP+ K+ + + T + TL+P +N+ +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH-STDTVKNTLDPKWNQHYDLYVGK- 64
Query: 72 ADAMNKTLVFAIFDFDRFSKHDQ---IGEVKVALCQI-DLAQTIEEWRELQ 118
++ ++++ + K +G V++ I L T + +L
Sbjct: 65 ----TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLC 111
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 100 bits (251), Expect = 3e-28
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
L +TVI A+ PYV+V + KK T+ T +P + + P
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKK---TEKCNNTNSPKWKQPLTVIVTP- 93
Query: 72 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI---DLAQTIEEWRELQ 118
L F ++ +G + + + + + E LQ
Sbjct: 94 ----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 139
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 102 bits (254), Expect = 1e-26
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 12 LSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKG 68
+V V++A + DM T DPYV++++ + T+ +NPV+NETF F
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-- 77
Query: 69 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 114
L + D + + +G + + + + E
Sbjct: 78 -ILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVP 121
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 95.3 bits (237), Expect = 2e-26
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
+S+TV+ A+ L A D G+SDPYV V + K K TK LNPV+ E F F+
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 72 ADAMNKTLVFAIFDFD-----------RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
+D + + D D + D +G+ + + L+ ++ W L
Sbjct: 76 SD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV--RTLSGEMDVWYNLDKR 129
Query: 121 EGEG 124
+
Sbjct: 130 TDKS 133
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 94.7 bits (235), Expect = 4e-26
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 21/122 (17%)
Query: 11 SLSVTVIQAEDLPALDMGG----------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
L V + +A L DPY+ V + D+ + +T +KT P +
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKPTY 87
Query: 61 NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI----DLAQTIEEWRE 116
NE F V L A+F + + ++ + T E W +
Sbjct: 88 NEEFCAN-VTDGG----HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVD 142
Query: 117 LQ 118
L+
Sbjct: 143 LE 144
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 89.9 bits (223), Expect = 2e-24
Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 21/126 (16%)
Query: 11 SLSVTVIQAEDLPALDM-----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV 59
L + + +A L DPY+ + + D + +T +KT +P
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPA 64
Query: 60 FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI--DLAQTIEEWREL 117
+++ FV V + A+F D + + ++ + ++ E+W +L
Sbjct: 65 WHDEFVTD-VCNGR----KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119
Query: 118 QSVEGE 123
+ EG+
Sbjct: 120 E-PEGK 124
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 73.1 bits (178), Expect = 2e-16
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL---NPVFNETFVF 66
N L + +I+A +LP Y ++ L D T ++ + E F F
Sbjct: 11 NVLKLWIIEARELPP-----KKRYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 67 KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ 126
+P A+ L + K +G V V + + E+W + G GG
Sbjct: 64 NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGS 123
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 72.6 bits (177), Expect = 3e-16
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 13 SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYA 72
V+ +AE L +D Y+KV+ ++F T V NP + + F+ V
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFF---GGQEFRTGVVWNNNNPRWTDKMDFENVL-- 450
Query: 73 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-AQTIEEWRELQ 118
+ L ++D D D +G C + E EL
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGS-----CDRSPHSGFHEVTCELN 492
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 57.7 bits (139), Expect = 6e-12
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV-FNETFVFKGV 69
+L V + +L G +D KV + + F ++V + F+ETF + V
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTF---RGQSFYSRVLENCEDVADFDETFRWP-V 72
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
+ N+ L IF++ + + IG ++ L ++
Sbjct: 73 ASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 57.3 bits (138), Expect = 7e-12
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 14/110 (12%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
L V V +A+ A + + YV + + K T + + P + + F+F+
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKV--QNVKS--TTIAVRGSQPSWEQDFMFE---- 55
Query: 72 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 119
+ ++ L +++ +G V + L I + + EW L S
Sbjct: 56 INRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 104
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 52.7 bits (126), Expect = 7e-10
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 14/112 (12%)
Query: 10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGV 69
+ L V V +A+ A + + YV + + + T + + P + + F+F+
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKV--QNVES--TTIAVRGSQPSWEQDFMFE-- 64
Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 119
+ ++ L +++ +G V + L I + + EW L S
Sbjct: 65 --INRLDLGLTVEVWN-KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 113
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 52.2 bits (124), Expect = 4e-09
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 8 NANSLSVTVIQAEDLPALDMGGTS--DPYVKVYLL---PDKKKKFETKVHRKTLNPVFNE 62
L V +I + LP ++ S DP V V + D + + NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554
Query: 63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
F F+ A+ + F + D+D SK+D IG+ + +
Sbjct: 555 EFEFEVTVPDLAL---VRFMVEDYDSSSKNDFIGQSTIPWNSL 594
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 40.0 bits (92), Expect = 7e-05
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL---PDKKKKFETK-VHRKTLNPVFNET- 63
AN+L V VI + L YV+V + D ++K+ T+ + NPV++E
Sbjct: 724 ANALRVKVISGQFLS----DRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEP 779
Query: 64 FVFKGVPYADAMNKTLVFAIFDFDR 88
F F V +L A F+
Sbjct: 780 FDFPKVVLPTLA--SLRIAAFEEGG 802
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 36.1 bits (82), Expect = 0.002
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLP-----DKKKKFETKVHRKTLNPVFNET-FV 65
LS+TVI + L + YV+V L ++ + + ++NPV+ E FV
Sbjct: 680 LSITVISGQFLS----ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 735
Query: 66 FKGVPYAD-AMNKTLVFAIFD 85
F+ + + A L A+ +
Sbjct: 736 FEKILMPELAS---LRVAVME 753
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 32.2 bits (72), Expect = 0.032
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLP----DKKKKFETK-VHRKTLNPVFNET-FV 65
+ + +I A+ L YV+V + +KKF+TK + ++P ++E FV
Sbjct: 652 IEIKIISAQFLS----DKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFV 707
Query: 66 FKGVPYAD-AMNKTLVFAIFDFD 87
FK V D A+ + + + +
Sbjct: 708 FKKVVLPDLAV---VRIIVSEEN 727
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 31.6 bits (71), Expect = 0.033
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 12 LSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKKKFETKVH----RKTLNPVFNETFV 65
L + + + G +PY V + + + E + T+ P ++ TF
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLV--KEYVESENGQMYIQKKPTMYPPWDSTFD 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.36
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 9/30 (30%)
Query: 2 KLEYDFNANSLSVTVIQAED-LPALDMGGT 30
KL+ SL + A+D PAL + T
Sbjct: 24 KLQ-----ASLK---LYADDSAPALAIKAT 45
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 27.8 bits (61), Expect = 0.70
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETF 64
L + E + P+ V + ++ + T+ P + TF
Sbjct: 8 LRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTF 62
>3s6p_A Capsid protein; coat protein, beta barrel, IG-like domain, IC
virus; 2.50A {Helicoverpa armigera stunt virus}
Length = 575
Score = 27.3 bits (59), Expect = 1.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 22 LPALDMGGT--SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNET 63
+P D G T ++P ++ LL + + VH K NPVF T
Sbjct: 431 MPPADFGQTVANNPKIEQSLLKETLGCY--LVHSKMRNPVFQLT 472
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.5
Identities = 11/84 (13%), Positives = 32/84 (38%), Gaps = 25/84 (29%)
Query: 42 DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
++ T+++ + + ++N+ VF Y + R + ++ + A
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFA--KY-------------NVSRLQPYLKL---RQA 143
Query: 102 LCQIDLAQTIEEWRELQSVEGEGG 125
L ++ A+ + ++G G
Sbjct: 144 LLELRPAKNV-------LIDGVLG 160
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 4.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 108 AQTIEEWRELQSVE 121
++I +WRE Q
Sbjct: 84 PESIRKWREEQRKR 97
>2h4o_A YONK protein; PSI, protein structure initiative, northeast
structural GENO consortium, NESG, structural genomi
unknown function; 2.80A {Bacillus subtilis} SCOP:
d.368.1.1
Length = 76
Score = 24.4 bits (52), Expect = 6.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 5 YDFNANSLSVTVIQAEDLPALDMGGTSDP 33
+FN ++S+TV + +LP + DP
Sbjct: 40 SEFNGKNVSITVKEENELPVKGVEMAGDP 68
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 25.3 bits (56), Expect = 8.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 61 NETFVFKGVPYA 72
N +KG+PYA
Sbjct: 19 NGVHKWKGIPYA 30
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 24.9 bits (55), Expect = 8.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 61 NETFVFKGVPYA 72
FV+KG+PYA
Sbjct: 19 EGVFVWKGIPYA 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,960,233
Number of extensions: 107115
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 59
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)