BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12096
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E E
Sbjct: 77 VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 131
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E
Sbjct: 75 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 127
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E
Sbjct: 100 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 77 IANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
+ ++ K+ KV + P W +F EG PY + + L + D+DRFS++D
Sbjct: 56 LPDKKHKLETKVKRKNLNPHWNETFLF------EGFPYEKVVQRILYLQVLDYDRFSRND 109
Query: 137 QIGEVKVALCQIDLAQTIEEWRELQ 161
IGEV + L ++DL Q W++L+
Sbjct: 110 PIGEVSIPLNKVDLTQMQTFWKDLK 134
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 78 ANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS 133
+N +KI K +++TG+ +F ER E +P+ +A +TL+ + DFD+FS
Sbjct: 54 SNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFS 112
Query: 134 KHDQIGEVKVALCQIDLAQTIEEWREL 160
+H IG+V V LC++DL + W+ L
Sbjct: 113 RHCVIGKVSVPLCEVDLVKGGHWWKAL 139
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 103 FIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 152
F E G+PY L F I FDRFS+ D IGEV + L I+L++
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE---WRELQSVEGEGG 168
VP A+ + L F+++DFDRFS+HD IG+V V ++LA+ + WR++ E
Sbjct: 78 VPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAEQPPDRPLWRDILEGGSEKA 136
Query: 169 QIG 171
+G
Sbjct: 137 DLG 139
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE---WRELQSVEGEGG 168
VP A+ + L F+++DFDRFS+HD IG+V V ++LA+ + WR++ E
Sbjct: 79 VPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAEQPPDRPLWRDILEGGSEKA 137
Query: 169 QIG 171
+G
Sbjct: 138 DLG 140
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 78 ANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQ 137
A+ K K +++ P W I+ + + M KTL ++D+DRFS +D
Sbjct: 60 ASAEYKRRTKYVQKSLNPEWNQTVIY------KSISMEQLMKKTLEVTVWDYDRFSSNDF 113
Query: 138 IGEVKVALCQIDLAQTIEEWRELQ 161
+GEV + L W L+
Sbjct: 114 LGEVLIDLSSTSHLDNTPRWYPLK 137
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 78 ANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQ 137
A++S K+ K T P W E G+ D KTL ++ D D+F ++
Sbjct: 60 ASKSNKLRTKTLRNTRNPVWN------ETLQYHGITEEDMQRKTLRISVCDEDKFGHNEF 113
Query: 138 IGEVKVALCQIDLAQ 152
IGE + +L ++ Q
Sbjct: 114 IGETRFSLKKLKANQ 128
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 78 ANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQ 137
A++S K+ K T P W E G+ D KTL ++ D D+F ++
Sbjct: 62 ASKSNKLRTKTLRNTRNPVWN------ETLQYHGITEEDMQRKTLRISVCDEDKFGHNEF 115
Query: 138 IGEVKVALCQIDLAQ 152
IGE + +L ++ Q
Sbjct: 116 IGETRFSLKKLKANQ 130
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQI 148
N L+F +FD +R ++ D +G+V V L +
Sbjct: 87 NHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 76 EIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKH 135
EI+ S + ++T P W F + + + V L +FD D+FS
Sbjct: 413 EISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDV---------LCLTLFDRDQFSPD 463
Query: 136 DQIGEVKVALCQIDLAQ 152
D +G ++ + +I Q
Sbjct: 464 DFLGRTEIPVAKIRTEQ 480
>pdb|1XQO|A Chain A, Crystal Structure Of Native Pa-Agog, 8-Oxoguanine Dna
Glycosylase From Pyrobaculum Aerophilum
pdb|1XQP|A Chain A, Crystal Structure Of 8-oxoguanosine Complexed Pa-agog, 8-
Oxoguanine Dna Glycosylase From Pyrobaculum Aerophilum
Length = 256
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 83 KIADKVAEETGMPP-------WVVVSIFIERQILEGVP 113
KI D VA ETG+PP W+ + + L GVP
Sbjct: 201 KIWDAVARETGIPPLHLDTLLWLAGRAVLYGENLHGVP 238
>pdb|1WFM|A Chain A, The First C2 Domain Of Human Synaptotagmin Xiii
Length = 138
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 130 DRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
DRFS+H GE+++ L + +W EL++
Sbjct: 100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 58 AFEDVSEELSSTVA-SIKKEIANESMKIADKVAEETGMPPWVVVS 101
+F D SE S V ++K+E + + IAD V++ G P V ++
Sbjct: 86 SFADGSERDPSVVCEAVKRETGPDGLNIADNVSQLIGKTPMVYLN 130
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 144
VP+ +V + D+D+ K+D IG+V V
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 117
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 144
VP+ +V + D+D+ K+D IG+V V
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 110
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 144
VP+ +V + D+D+ K+D IG+V V
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,968,797
Number of Sequences: 62578
Number of extensions: 122165
Number of successful extensions: 379
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 26
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)