Query psy12096
Match_columns 173
No_of_seqs 184 out of 1208
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:38:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08677 C2A_Synaptotagmin-13 C 99.9 1.9E-26 4.2E-31 170.9 9.6 109 51-160 1-118 (118)
2 cd08393 C2A_SLP-1_2 C2 domain 99.9 2.5E-23 5.5E-28 154.9 10.1 111 50-161 1-125 (125)
3 cd04029 C2A_SLP-4_5 C2 domain 99.9 8.6E-23 1.9E-27 152.2 10.6 110 51-161 2-125 (125)
4 cd04028 C2B_RIM1alpha C2 domai 99.9 2E-22 4.4E-27 154.6 11.4 113 50-168 17-144 (146)
5 cd08680 C2_Kibra C2 domain fou 99.9 1.2E-22 2.6E-27 151.8 9.7 108 52-160 2-124 (124)
6 cd08389 C2A_Synaptotagmin-14_1 99.9 2.2E-22 4.7E-27 149.7 10.9 112 50-162 2-124 (124)
7 cd08381 C2B_PI3K_class_II C2 d 99.9 2.5E-22 5.5E-27 149.1 10.7 108 50-160 1-121 (122)
8 cd08392 C2A_SLP-3 C2 domain fi 99.9 2.2E-22 4.8E-27 150.9 10.4 110 51-161 2-128 (128)
9 cd08407 C2B_Synaptotagmin-13 C 99.9 2.4E-22 5.2E-27 152.8 6.7 109 51-162 2-125 (138)
10 cd08388 C2A_Synaptotagmin-4-11 99.9 2.4E-21 5.2E-26 144.9 11.0 113 50-162 2-128 (128)
11 cd08385 C2A_Synaptotagmin-1-5- 99.9 2.5E-21 5.5E-26 142.9 11.0 112 50-162 2-124 (124)
12 cd08387 C2A_Synaptotagmin-8 C2 99.9 2.6E-21 5.7E-26 142.9 10.6 112 50-162 2-124 (124)
13 cd08406 C2B_Synaptotagmin-12 C 99.9 1.1E-21 2.4E-26 148.6 7.1 110 51-163 2-124 (136)
14 KOG1028|consensus 99.8 1.7E-21 3.6E-26 171.8 8.2 147 3-160 244-404 (421)
15 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.6E-20 3.5E-25 138.6 10.8 113 50-162 2-125 (125)
16 cd04030 C2C_KIAA1228 C2 domain 99.8 2E-20 4.4E-25 138.2 11.1 111 50-161 2-127 (127)
17 cd08521 C2A_SLP C2 domain firs 99.8 2.9E-20 6.3E-25 136.6 10.6 109 51-160 1-123 (123)
18 cd08395 C2C_Munc13 C2 domain t 99.8 3.3E-20 7.2E-25 138.0 10.4 87 76-163 18-113 (120)
19 cd04031 C2A_RIM1alpha C2 domai 99.8 4.5E-20 9.7E-25 135.9 10.6 109 51-161 3-125 (125)
20 cd08408 C2B_Synaptotagmin-14_1 99.8 1.2E-20 2.6E-25 143.1 6.9 110 51-162 2-125 (138)
21 cd08390 C2A_Synaptotagmin-15-1 99.8 9.3E-20 2E-24 134.0 10.3 111 51-162 1-123 (123)
22 cd08409 C2B_Synaptotagmin-15 C 99.8 3.2E-20 7E-25 140.3 7.2 112 51-163 2-125 (137)
23 cd08685 C2_RGS-like C2 domain 99.8 1.5E-19 3.2E-24 133.8 9.6 106 51-160 1-119 (119)
24 cd08692 C2B_Tac2-N C2 domain s 99.8 6.7E-20 1.5E-24 138.9 7.5 109 51-162 1-123 (135)
25 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 2.6E-19 5.6E-24 139.2 9.8 113 50-162 1-138 (162)
26 cd08404 C2B_Synaptotagmin-4 C2 99.8 1.3E-19 2.8E-24 136.2 7.5 111 50-163 1-124 (136)
27 KOG1028|consensus 99.8 2.9E-19 6.2E-24 157.6 9.9 118 49-167 152-280 (421)
28 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4.8E-19 1E-23 131.3 8.8 93 76-172 20-114 (121)
29 cd08682 C2_Rab11-FIP_classI C2 99.8 9.4E-19 2E-23 129.8 10.0 95 76-171 18-119 (126)
30 cd08405 C2B_Synaptotagmin-7 C2 99.8 2.7E-19 5.8E-24 134.4 7.0 111 50-163 1-124 (136)
31 cd08410 C2B_Synaptotagmin-17 C 99.8 3.7E-19 8E-24 134.0 7.1 111 51-163 1-124 (135)
32 cd08384 C2B_Rabphilin_Doc2 C2 99.8 4.3E-19 9.4E-24 132.5 7.2 109 52-163 1-122 (133)
33 cd08403 C2B_Synaptotagmin-3-5- 99.8 7.1E-19 1.5E-23 131.8 7.4 110 51-163 1-123 (134)
34 cd08402 C2B_Synaptotagmin-1 C2 99.8 7E-19 1.5E-23 132.1 7.3 110 51-163 2-124 (136)
35 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.6E-18 2.1E-22 123.7 11.8 93 77-172 20-113 (123)
36 cd04010 C2B_RasA3 C2 domain se 99.8 2.5E-18 5.4E-23 132.1 8.8 91 76-167 17-127 (148)
37 cd04022 C2A_MCTP_PRT_plant C2 99.8 6.5E-18 1.4E-22 125.5 10.0 95 76-171 19-117 (127)
38 cd00276 C2B_Synaptotagmin C2 d 99.7 7.3E-18 1.6E-22 125.2 7.5 111 51-164 1-124 (134)
39 cd08379 C2D_MCTP_PRT_plant C2 99.7 3.7E-17 8E-22 122.5 11.3 85 76-164 22-113 (126)
40 cd04016 C2_Tollip C2 domain pr 99.7 4.6E-17 1E-21 121.2 10.2 85 76-164 20-107 (121)
41 cd08400 C2_Ras_p21A1 C2 domain 99.7 9E-17 1.9E-21 119.7 11.5 92 76-171 20-114 (126)
42 cd04042 C2A_MCTP_PRT C2 domain 99.7 8.6E-17 1.9E-21 118.4 11.2 91 76-171 19-111 (121)
43 cd04035 C2A_Rabphilin_Doc2 C2 99.7 8.8E-17 1.9E-21 118.5 10.2 109 51-160 2-123 (123)
44 cd08688 C2_KIAA0528-like C2 do 99.7 4.6E-17 9.9E-22 118.3 8.6 86 76-162 19-109 (110)
45 cd08376 C2B_MCTP_PRT C2 domain 99.7 1E-16 2.2E-21 116.8 9.7 85 76-163 19-104 (116)
46 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.5E-16 3.3E-21 117.8 10.2 90 77-171 16-111 (121)
47 cd08678 C2_C21orf25-like C2 do 99.7 1.9E-16 4E-21 117.6 10.5 92 76-171 16-111 (126)
48 cd08690 C2_Freud-1 C2 domain f 99.7 1.3E-16 2.8E-21 123.6 9.6 87 75-162 22-121 (155)
49 KOG0905|consensus 99.7 1.3E-17 2.8E-22 157.5 3.7 133 29-163 1469-1636(1639)
50 cd04036 C2_cPLA2 C2 domain pre 99.7 2.6E-16 5.6E-21 115.5 9.7 84 76-163 19-106 (119)
51 cd04009 C2B_Munc13-like C2 dom 99.7 3.1E-16 6.6E-21 117.6 9.8 100 50-150 2-118 (133)
52 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 5.1E-16 1.1E-20 114.6 10.4 93 76-172 19-114 (121)
53 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 4.9E-16 1.1E-20 115.7 9.9 92 76-171 19-124 (133)
54 cd08373 C2A_Ferlin C2 domain f 99.7 6E-16 1.3E-20 114.8 10.1 90 75-165 12-102 (127)
55 cd08675 C2B_RasGAP C2 domain s 99.7 6E-16 1.3E-20 117.1 9.3 91 76-167 17-125 (137)
56 cd04024 C2A_Synaptotagmin-like 99.7 6.3E-16 1.4E-20 114.0 9.0 94 76-172 22-121 (128)
57 cd04026 C2_PKC_alpha_gamma C2 99.6 1.2E-15 2.7E-20 113.5 10.3 109 50-163 1-122 (131)
58 cd08681 C2_fungal_Inn1p-like C 99.6 1E-15 2.2E-20 111.8 9.1 85 76-164 20-106 (118)
59 cd08394 C2A_Munc13 C2 domain f 99.6 2E-15 4.4E-20 113.2 10.9 90 77-172 19-113 (127)
60 cd04019 C2C_MCTP_PRT_plant C2 99.6 2.3E-15 4.9E-20 115.8 11.3 86 76-164 19-110 (150)
61 KOG1030|consensus 99.6 3.5E-16 7.7E-21 121.5 6.6 72 76-151 25-97 (168)
62 cd04050 C2B_Synaptotagmin-like 99.6 2.1E-15 4.5E-20 108.6 9.8 83 76-164 19-104 (105)
63 cd04027 C2B_Munc13 C2 domain s 99.6 1.4E-15 3.1E-20 113.1 8.9 91 76-172 20-122 (127)
64 cd04018 C2C_Ferlin C2 domain t 99.6 1.8E-15 3.9E-20 116.7 9.6 93 75-169 32-132 (151)
65 cd04039 C2_PSD C2 domain prese 99.6 1E-15 2.2E-20 111.5 7.6 72 78-151 26-98 (108)
66 cd04011 C2B_Ferlin C2 domain s 99.6 9.8E-16 2.1E-20 111.2 7.5 87 75-162 18-110 (111)
67 KOG0696|consensus 99.6 1.7E-16 3.6E-21 138.8 3.6 86 75-163 198-289 (683)
68 cd08391 C2A_C2C_Synaptotagmin_ 99.6 2.9E-15 6.2E-20 109.3 9.5 84 76-163 26-110 (121)
69 cd08382 C2_Smurf-like C2 domai 99.6 3.3E-15 7.2E-20 110.6 9.6 91 76-171 19-116 (123)
70 cd08377 C2C_MCTP_PRT C2 domain 99.6 4.7E-15 1E-19 108.2 9.3 90 77-172 21-111 (119)
71 cd04041 C2A_fungal C2 domain f 99.6 1.7E-15 3.6E-20 110.2 6.8 82 76-161 21-107 (111)
72 cd04014 C2_PKC_epsilon C2 doma 99.6 4.7E-15 1E-19 110.7 9.4 82 77-163 34-119 (132)
73 cd08383 C2A_RasGAP C2 domain ( 99.6 7.4E-15 1.6E-19 106.7 9.1 93 76-172 16-110 (117)
74 cd04048 C2A_Copine C2 domain f 99.6 5.8E-15 1.3E-19 108.6 8.2 84 76-162 19-114 (120)
75 cd04043 C2_Munc13_fungal C2 do 99.6 1.2E-14 2.6E-19 107.2 9.7 85 76-163 20-111 (126)
76 cd04015 C2_plant_PLD C2 domain 99.6 1.6E-14 3.4E-19 111.9 10.3 85 74-163 54-140 (158)
77 cd04049 C2_putative_Elicitor-r 99.6 1.7E-14 3.8E-19 106.3 10.1 87 76-163 20-109 (124)
78 cd04052 C2B_Tricalbin-like C2 99.6 9.4E-15 2E-19 106.3 8.1 84 75-162 10-96 (111)
79 cd04017 C2D_Ferlin C2 domain f 99.6 4.1E-14 8.8E-19 106.3 10.6 88 76-163 20-118 (135)
80 cd04040 C2D_Tricalbin-like C2 99.6 2.9E-14 6.3E-19 103.5 9.2 87 76-165 18-106 (115)
81 cd04051 C2_SRC2_like C2 domain 99.5 4.8E-14 1E-18 104.0 9.1 88 76-164 19-116 (125)
82 cd08691 C2_NEDL1-like C2 domai 99.5 5E-14 1.1E-18 106.9 9.3 92 76-172 19-131 (137)
83 cd08375 C2_Intersectin C2 doma 99.5 8.8E-14 1.9E-18 105.1 9.0 72 76-150 34-106 (136)
84 cd04046 C2_Calpain C2 domain p 99.5 1.8E-13 3.8E-18 101.7 10.3 89 76-171 22-113 (126)
85 cd04021 C2_E3_ubiquitin_ligase 99.5 1.4E-13 3.1E-18 102.3 9.7 91 76-171 20-118 (125)
86 cd08686 C2_ABR C2 domain in th 99.5 1.2E-13 2.6E-18 102.4 9.0 68 76-148 13-93 (118)
87 cd04032 C2_Perforin C2 domain 99.5 8E-14 1.7E-18 104.6 8.0 72 76-149 46-118 (127)
88 cd04045 C2C_Tricalbin-like C2 99.5 8E-14 1.7E-18 103.1 7.9 87 76-167 20-108 (120)
89 cd08676 C2A_Munc13-like C2 dom 99.5 2.7E-13 5.9E-18 104.8 9.2 63 90-160 91-153 (153)
90 cd04044 C2A_Tricalbin-like C2 99.5 2.8E-13 6E-18 99.2 8.0 81 77-161 23-107 (124)
91 cd04038 C2_ArfGAP C2 domain pr 99.5 2.6E-13 5.7E-18 103.9 8.0 71 76-150 20-91 (145)
92 cd04013 C2_SynGAP_like C2 doma 99.4 9.9E-13 2.1E-17 101.0 10.7 92 77-172 26-123 (146)
93 cd04037 C2E_Ferlin C2 domain f 99.4 3.6E-13 7.8E-18 100.0 7.8 72 76-150 19-93 (124)
94 cd08374 C2F_Ferlin C2 domain s 99.4 2.8E-13 6.1E-18 102.5 6.8 74 77-151 24-124 (133)
95 PLN03008 Phospholipase D delta 99.4 7.8E-13 1.7E-17 123.6 9.3 85 75-164 74-160 (868)
96 cd04047 C2B_Copine C2 domain s 99.3 2.3E-12 5E-17 93.0 6.6 70 76-149 19-99 (110)
97 cd00275 C2_PLC_like C2 domain 99.3 8.6E-12 1.9E-16 91.7 8.3 84 76-166 23-114 (128)
98 PLN03200 cellulose synthase-in 99.2 1.2E-11 2.7E-16 124.3 7.4 84 77-163 1998-2083(2102)
99 PLN02223 phosphoinositide phos 99.2 5.2E-11 1.1E-15 107.3 8.7 82 77-164 434-521 (537)
100 PLN02952 phosphoinositide phos 99.2 7E-11 1.5E-15 108.1 8.5 82 78-165 497-584 (599)
101 PF00168 C2: C2 domain; Inter 99.2 1.8E-10 3.9E-15 77.7 7.9 64 76-142 18-85 (85)
102 KOG2059|consensus 99.1 5.4E-11 1.2E-15 108.8 6.2 92 76-172 24-117 (800)
103 cd00030 C2 C2 domain. The C2 d 99.1 5E-10 1.1E-14 76.1 8.2 82 76-160 18-102 (102)
104 KOG1013|consensus 99.1 1.2E-10 2.7E-15 98.8 5.5 139 4-146 174-327 (362)
105 smart00239 C2 Protein kinase C 99.1 5.8E-10 1.3E-14 76.5 7.8 73 76-151 19-95 (101)
106 PLN02230 phosphoinositide phos 99.1 3.7E-10 8E-15 103.3 7.5 82 77-164 495-582 (598)
107 KOG1011|consensus 99.0 1.4E-10 3E-15 105.8 4.2 92 74-171 312-415 (1283)
108 PLN02222 phosphoinositide phos 99.0 4.9E-10 1.1E-14 102.3 7.0 72 77-151 478-555 (581)
109 KOG2059|consensus 99.0 7.2E-10 1.6E-14 101.6 5.8 147 4-163 77-254 (800)
110 KOG1328|consensus 98.9 4.2E-10 9.1E-15 103.5 2.6 79 90-172 179-293 (1103)
111 COG5038 Ca2+-dependent lipid-b 98.9 2.3E-09 5E-14 102.6 6.2 77 76-155 1059-1137(1227)
112 PLN02228 Phosphoinositide phos 98.9 5.3E-09 1.1E-13 95.3 8.2 72 77-151 457-535 (567)
113 KOG0169|consensus 98.9 1.6E-09 3.5E-14 100.1 4.7 73 76-151 639-718 (746)
114 KOG1328|consensus 98.9 7.6E-10 1.6E-14 101.9 1.7 74 75-149 965-1048(1103)
115 KOG1264|consensus 98.7 3.6E-08 7.9E-13 91.9 6.4 114 32-151 1041-1163(1267)
116 cd08684 C2A_Tac2-N C2 domain f 98.6 2.5E-08 5.5E-13 70.5 2.3 71 86-160 33-103 (103)
117 KOG1013|consensus 98.5 1.4E-08 3.1E-13 86.4 0.2 104 51-154 80-196 (362)
118 COG5038 Ca2+-dependent lipid-b 98.4 1E-06 2.2E-11 85.0 8.6 71 77-151 458-530 (1227)
119 KOG1031|consensus 98.4 2.6E-07 5.6E-12 84.1 4.4 84 79-163 26-121 (1169)
120 PLN02270 phospholipase D alpha 98.4 1.5E-06 3.3E-11 81.8 8.5 86 74-164 43-131 (808)
121 KOG1011|consensus 98.4 9.3E-07 2E-11 81.3 6.8 86 77-163 1144-1238(1283)
122 cd08683 C2_C2cd3 C2 domain fou 98.2 2.2E-06 4.7E-11 64.7 5.5 82 78-160 33-143 (143)
123 cd08689 C2_fungal_Pkc1p C2 dom 98.0 2.3E-05 5E-10 57.2 6.7 64 77-149 22-87 (109)
124 KOG2060|consensus 98.0 2E-06 4.3E-11 74.6 0.8 86 76-165 289-382 (405)
125 PLN02964 phosphatidylserine de 97.6 3.3E-05 7.1E-10 71.8 3.1 87 78-167 68-158 (644)
126 PLN02352 phospholipase D epsil 97.5 0.0002 4.3E-09 67.5 6.7 75 79-164 37-114 (758)
127 KOG1326|consensus 97.5 3.5E-05 7.5E-10 73.6 0.7 70 75-147 631-703 (1105)
128 KOG1327|consensus 97.3 0.00045 9.7E-09 62.7 6.1 90 76-169 155-255 (529)
129 cd08397 C2_PI3K_class_III C2 d 96.5 0.0073 1.6E-07 46.9 6.0 57 91-148 50-107 (159)
130 KOG1265|consensus 96.1 0.0095 2.1E-07 57.0 5.5 116 19-151 669-797 (1189)
131 PF00792 PI3K_C2: Phosphoinosi 96.0 0.032 7E-07 42.0 6.9 58 91-149 23-86 (142)
132 cd08380 C2_PI3K_like C2 domain 96.0 0.062 1.4E-06 41.0 8.5 58 91-149 48-108 (156)
133 KOG1326|consensus 95.8 0.0079 1.7E-07 58.0 3.5 85 76-161 225-316 (1105)
134 KOG3837|consensus 95.5 0.013 2.8E-07 52.1 3.2 84 78-162 388-487 (523)
135 PF14429 DOCK-C2: C2 domain in 95.3 0.073 1.6E-06 41.8 6.8 58 89-147 60-120 (184)
136 cd08398 C2_PI3K_class_I_alpha 95.3 0.15 3.3E-06 39.5 8.4 50 99-149 53-107 (158)
137 cd08693 C2_PI3K_class_I_beta_d 95.2 0.16 3.4E-06 39.9 8.4 59 90-149 46-121 (173)
138 cd08694 C2_Dock-A C2 domains f 95.1 0.19 4.2E-06 40.4 8.7 57 89-146 54-114 (196)
139 cd08695 C2_Dock-B C2 domains f 94.2 0.13 2.7E-06 41.3 5.6 58 89-147 54-113 (189)
140 PF15627 CEP76-C2: CEP76 C2 do 94.1 0.32 7E-06 37.8 7.5 63 86-149 43-116 (156)
141 cd08399 C2_PI3K_class_I_gamma 93.0 0.39 8.5E-06 38.1 6.5 57 91-148 49-122 (178)
142 cd04012 C2A_PI3K_class_II C2 d 92.7 0.21 4.5E-06 39.0 4.5 48 100-148 62-119 (171)
143 cd08679 C2_DOCK180_related C2 92.5 0.45 9.7E-06 37.3 6.3 57 89-147 54-115 (178)
144 PF12416 DUF3668: Cep120 prote 91.0 1.2 2.6E-05 38.7 7.8 79 86-165 27-116 (340)
145 cd08696 C2_Dock-C C2 domains f 90.8 0.99 2.1E-05 35.8 6.5 58 89-147 55-118 (179)
146 cd08697 C2_Dock-D C2 domains f 90.5 2.4 5.3E-05 33.8 8.5 58 89-147 57-123 (185)
147 KOG1327|consensus 87.1 0.67 1.4E-05 42.5 3.5 60 89-151 42-105 (529)
148 smart00142 PI3K_C2 Phosphoinos 87.0 1.2 2.6E-05 31.6 4.2 39 91-130 52-91 (100)
149 PF10358 NT-C2: N-terminal C2 83.0 3.5 7.5E-05 30.4 5.3 54 97-151 48-107 (143)
150 cd08400 C2_Ras_p21A1 C2 domain 75.6 1.9 4.1E-05 31.5 1.8 49 3-61 73-124 (126)
151 cd04010 C2B_RasA3 C2 domain se 71.2 4.1 9E-05 31.0 2.8 20 3-22 90-110 (148)
152 PF15625 CC2D2AN-C2: CC2D2A N- 70.2 23 0.00051 27.4 6.9 79 79-162 38-124 (168)
153 COG3621 Patatin [General funct 63.2 6.7 0.00015 34.4 2.7 38 7-45 126-181 (394)
154 KOG1329|consensus 60.0 11 0.00025 36.7 3.9 83 79-165 139-224 (887)
155 cd08687 C2_PKN-like C2 domain 56.4 16 0.00035 26.1 3.3 50 89-147 22-71 (98)
156 cd04016 C2_Tollip C2 domain pr 56.0 12 0.00026 27.4 2.7 16 3-18 73-88 (121)
157 KOG0906|consensus 51.7 17 0.00036 34.7 3.4 60 103-163 79-144 (843)
158 PF07162 B9-C2: Ciliary basal 51.6 54 0.0012 25.2 5.9 59 100-159 56-117 (168)
159 KOG0694|consensus 50.0 4 8.7E-05 38.6 -0.8 50 76-130 26-77 (694)
160 KOG1452|consensus 48.7 25 0.00055 30.8 3.8 80 79-165 75-159 (442)
161 KOG4028|consensus 41.8 32 0.00069 26.3 3.0 42 121-162 75-118 (175)
162 PF01060 DUF290: Transthyretin 37.8 51 0.0011 22.1 3.4 24 121-144 13-36 (80)
163 PF11618 DUF3250: Protein of u 32.8 43 0.00093 24.2 2.5 58 89-149 12-74 (107)
164 KOG2419|consensus 28.3 16 0.00035 34.8 -0.5 56 78-136 305-361 (975)
165 COG1334 FlaG Uncharacterized f 27.9 30 0.00064 25.8 0.9 24 3-27 70-93 (120)
166 KOG0904|consensus 21.3 1.9E+02 0.004 28.9 5.1 39 90-129 382-421 (1076)
No 1
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.94 E-value=1.9e-26 Score=170.93 Aligned_cols=109 Identities=17% Similarity=0.364 Sum_probs=97.1
Q ss_pred cceecchheecccccceeeEEeeec----cCCCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCcccCCCCE
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK----EIANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKT 121 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~----~~~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~ 121 (173)
++|++++.|.....+|.+.++.++. +.+|||||++ ++.+++|+++++|+||+|||+|.|. |+.+++.+.+
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~t 79 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEESLDGT 79 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHhCCcE
Confidence 4689999999999999877765532 3479999998 3358899999999999999999999 9999999999
Q ss_pred EEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096 122 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160 (173)
Q Consensus 122 L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L 160 (173)
|.|+|||+|++++|++||++.++|++++...+..+|.+|
T Consensus 80 L~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 80 LTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999999999999999999998777788999876
No 2
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.90 E-value=2.5e-23 Score=154.87 Aligned_cols=111 Identities=20% Similarity=0.307 Sum_probs=97.8
Q ss_pred ccceecchheecccccceeeEEeee--------ccCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYA 115 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~ 115 (173)
+|+|++++.|......|.+.|+.++ .+..||||+++ . ..++||+++++++||+|||+|.|. ++.+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHH
Confidence 4899999999998888887776653 14579999998 1 346899999999999999999999 9888
Q ss_pred cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCc
Q psy12096 116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161 (173)
Q Consensus 116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~ 161 (173)
++....|.|+|||+|.++++++||++.++|..+...+....||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 8888899999999999999999999999999998887778999985
No 3
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.89 E-value=8.6e-23 Score=152.21 Aligned_cols=110 Identities=17% Similarity=0.315 Sum_probs=97.4
Q ss_pred cceecchheecccccceeeEEeee--------ccCCCccEEEe----c--CeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA----D--KVAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~----~--~~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
|+|++++.|......|.+.|+.++ .+..||||+++ . ..++||+++++++||+|||+|.|. |+.++
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~ 80 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQ 80 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHH
Confidence 889999999988888887776553 13579999998 1 347899999999999999999999 98888
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCc
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~ 161 (173)
+....|.|.|||+|.++++++||++.++|.++...+..+.|++|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 878899999999999999999999999999999888889999985
No 4
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=2e-22 Score=154.60 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=94.6
Q ss_pred ccceecchheecccccceeeEEeeec--------cCCCccEEEe---cC---eEEeecccCCCCCCeeecEEEecccCcc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA---DK---VAEETGMPPWVVVSIFIERQILEGVPYA 115 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~---~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~ 115 (173)
.|+|++++.|. ...|.+.|+.++. +..|||||++ .+ .++||+++++|+||+|||+|.|. |+
T Consensus 17 ~G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v~-- 91 (146)
T cd04028 17 MGDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-VS-- 91 (146)
T ss_pred cceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-Ec--
Confidence 49999999994 4567666655421 2369999999 22 48999999999999999999999 87
Q ss_pred cCCCCEEEEEEE-EcCCCCCCceeEEEEEeCCccccccccceeEeCccCCcccc
Q psy12096 116 DAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 168 (173)
Q Consensus 116 ~l~~~~L~~~V~-D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~~ 168 (173)
+.+..|.|+|| |+++++++++||++.|+|+++...+....||+|.+...+.+
T Consensus 92 -l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~~~ 144 (146)
T cd04028 92 -PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSLVD 144 (146)
T ss_pred -CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccccC
Confidence 56779999999 69999999999999999999988888889999998866543
No 5
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.88 E-value=1.2e-22 Score=151.79 Aligned_cols=108 Identities=13% Similarity=0.211 Sum_probs=94.9
Q ss_pred ceecchheecccccceeeEEeeec-------cCCCccEEEe----c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 52 DLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----D---KVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 52 ~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
+|++++.|....++|.+.|..++. +..|||||++ . +.++||+++++++||+|||+|.|+ |+.+++
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L 80 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKL 80 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHh
Confidence 688999999999998877766532 3469999999 2 358999999999999999999999 999999
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc-ccceeEeC
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWREL 160 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~-~~~~W~~L 160 (173)
.+++|.|+|||+++++++++||++.|+|.+++... ....||+|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999999999999999997664 46789986
No 6
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.88 E-value=2.2e-22 Score=149.74 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=99.0
Q ss_pred ccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
.|+|++++.|.....+|.+.|+.++. +..||||+++ .+.++||+++++ +||+|||+|.|++++.+++.
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~ 80 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELN 80 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhc
Confidence 48999999999999999887776542 3468999987 456899999988 99999999999867778888
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
+.+|.|+|||++.++++++||++.++|+.+........|++|+|
T Consensus 81 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 81 NMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 89999999999999999999999999999988888899999986
No 7
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.88 E-value=2.5e-22 Score=149.09 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=91.9
Q ss_pred ccceecchheecccccceeeEEeeec------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEeccc-Cccc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGV-PYAD 116 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV-~~~~ 116 (173)
+|+|++++.|. ...|.+.|+.++. +..||||+++ ...++||+++++++||.|||+|.|+ + +..+
T Consensus 1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~-~~~~~~ 77 (122)
T cd08381 1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYD-GLPVED 77 (122)
T ss_pred CCeEEEEEEEe--CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEe-cCChHH
Confidence 37899999999 4556666555432 3579999998 2357999999999999999999999 6 7677
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L 160 (173)
+....|.|.|||+|.++++++||++.++|.++...+..+.||+|
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 77889999999999999999999999999999877777899998
No 8
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.88 E-value=2.2e-22 Score=150.86 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=95.5
Q ss_pred cceecchheecccccceeeEEeeec--------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
|+|++++.|....++|.+.|..++. +..|||||++ ...++||+++++++||+|||+|.|. |+..+
T Consensus 2 G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~~ 80 (128)
T cd08392 2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEADL 80 (128)
T ss_pred cEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHHH
Confidence 7899999999988888877765531 4569999998 2347899999999999999999999 99888
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc---ccceeEeCc
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ---TIEEWRELQ 161 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~---~~~~W~~L~ 161 (173)
+....|.|+|||++.++++++||++.|+|.++.... ....||+|.
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 888899999999999999999999999999997653 456899984
No 9
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.87 E-value=2.4e-22 Score=152.79 Aligned_cols=109 Identities=13% Similarity=0.208 Sum_probs=94.0
Q ss_pred cceecchheecccccceeeEEeeec---------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcc
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK---------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYA 115 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~---------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~ 115 (173)
|+|++++.|....++|.+.|..++. ...|||||++ +..|+||+++++++||+|||+|.|. |+.+
T Consensus 2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~~~ 80 (138)
T cd08407 2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LPSE 80 (138)
T ss_pred CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CCHH
Confidence 8999999999999998877765532 2269999998 2247899999999999999999999 9999
Q ss_pred cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 116 ~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
++.+.+|.|+|||+|.++++++||++.+++.. .+.+.++|.++..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999999999999999999999999999975 3556789988744
No 10
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.86 E-value=2.4e-21 Score=144.93 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=96.8
Q ss_pred ccceecchheecccccceeeEEeeec--------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK--------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~--------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
.|+|++++.|......|.+.|+.++. +..||||+++ .+++.||+++++++||.|||+|.|..++..++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~ 81 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQL 81 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHh
Confidence 48999999999988888877776532 4469999997 35578999999999999999999943777777
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc--cccceeEeCcc
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 162 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~--~~~~~W~~L~p 162 (173)
.+..|.|.|||+|+++++++||++.++|.++... ++..+|.+|||
T Consensus 82 ~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 82 QDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 7778999999999999999999999999999766 56789999986
No 11
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.86 E-value=2.5e-21 Score=142.89 Aligned_cols=112 Identities=37% Similarity=0.593 Sum_probs=97.4
Q ss_pred ccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
.|+|++++.|......|.+.|+..+. +..||||+++ .+.++||++++++.||.|||+|.|. ++..++.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~ 80 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSELG 80 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHHhC
Confidence 47899999999888888877776542 3469999998 3457899999999999999999999 9877777
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
...|.|.|||+|+++++++||++.++|+++..+...++|++|++
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEccC
Confidence 77999999999999999999999999999987777899999964
No 12
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.86 E-value=2.6e-21 Score=142.93 Aligned_cols=112 Identities=23% Similarity=0.444 Sum_probs=98.0
Q ss_pred ccceecchheecccccceeeEEeeec-------cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
+|+|++++.|......|.+.|+..+. +..||||+++ ...++||+++++++||.|||+|.|. ++..++.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~ 80 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQELP 80 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHhC
Confidence 48999999999988888877765532 3579999998 2457899999999999999999999 9887777
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
...|.|.|||++.++++++||++.++|+++..++..+.||+|++
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence 78999999999999999999999999999987888899999974
No 13
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.85 E-value=1.1e-21 Score=148.62 Aligned_cols=110 Identities=16% Similarity=0.240 Sum_probs=94.0
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
|+|++++.|....++|.+.|..++. +.+|||||++ . ..++||+++++++||+|||+|.|. |+.+++
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~l 80 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIVL 80 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHHh
Confidence 7899999999988888877766542 3479999998 2 237799999999999999999999 999889
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
.+..|.|+|||+|.++++++||++.|+... .+++..+|.++...
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 999999999999999999999999998764 35667899887554
No 14
>KOG1028|consensus
Probab=99.85 E-value=1.7e-21 Score=171.82 Aligned_cols=147 Identities=16% Similarity=0.314 Sum_probs=117.4
Q ss_pred CCChhhhheeeeeee-eeecCCCCchhhhhhhhccCCcccCCCCCCCcccceecchheecccccceeeEEeeec------
Q psy12096 3 PFDKREVVQEVLNVI-SFNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKK------ 75 (173)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~lv~~ik~------ 75 (173)
||||+++||||.+|| ++|...+..+-++....+... .+..|+|.+++.|.....+|...|...+.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~--------~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~ 315 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS--------EELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDV 315 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccccCCc--------ccccceEEEEEEeecCCCeEEEEEEEecCCCcccC
Confidence 799999999999999 799988744555555544321 12227999999999999998866554432
Q ss_pred -cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096 76 -EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 148 (173)
Q Consensus 76 -~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l 148 (173)
...|||||++ ...|+||.+.++++||+|||+|.|. |+.+.+.+..|.|+|||+|.++++++||.+.++...
T Consensus 316 ~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~- 393 (421)
T KOG1028|consen 316 GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS- 393 (421)
T ss_pred CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHhheeEEEEEEEEcccccccceeeEEEecCCC-
Confidence 3468999998 3458999999999999999999998 999999988999999999999999999999988765
Q ss_pred ccccccceeEeC
Q psy12096 149 DLAQTIEEWREL 160 (173)
Q Consensus 149 ~~~~~~~~W~~L 160 (173)
.+.+..+|.++
T Consensus 394 -~~~~~~hW~~m 404 (421)
T KOG1028|consen 394 -TGEEVRHWQEM 404 (421)
T ss_pred -CchHHHHHHHH
Confidence 23335566664
No 15
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=1.6e-20 Score=138.61 Aligned_cols=113 Identities=24% Similarity=0.433 Sum_probs=95.6
Q ss_pred ccceecchheecccccceeeEEeee-------ccCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
.|+|++++.|......+.+.+.... .+..||||+++ ...+.+|+++++++||.|||+|.|..++.+.+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~ 81 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQ 81 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhC
Confidence 4889999999988778877766543 23579999997 345789999999999999999999834445566
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
...|.|.|||+|+++++++||++.++|.++...+..+.|++|+|
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 82 QRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 67899999999999999999999999999988888899999986
No 16
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.84 E-value=2e-20 Score=138.24 Aligned_cols=111 Identities=18% Similarity=0.327 Sum_probs=96.8
Q ss_pred ccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
.|+|++++.|.....+|.+.++..+. +..||||+++ ...++||++++++.||.|||+|.|. ++..+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHH
Confidence 38999999999998888887776542 4579999998 1457999999999999999999999 98877
Q ss_pred CCCCEEEEEEEEcCCC--CCCceeEEEEEeCCccccccccceeEeCc
Q psy12096 117 AMNKTLVFAIFDFDRF--SKHDQIGEVKVALCQIDLAQTIEEWRELQ 161 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~--~~~d~IG~v~l~L~~l~~~~~~~~W~~L~ 161 (173)
+....|.|.|||++.+ +++++||++.++|.++...+....||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 7778999999999986 78999999999999998777778999985
No 17
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.83 E-value=2.9e-20 Score=136.55 Aligned_cols=109 Identities=20% Similarity=0.370 Sum_probs=94.0
Q ss_pred cceecchheecccccceeeEEeee--------ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
|+|++++.|......|.+.|+..+ .+..||||+++ ...+.||++++++.||.|||+|.|. ++..+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence 678999999988888887776542 13569999997 1247899999999999999999999 98877
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L 160 (173)
+....|.|.|||++.++++++||++.++|+++..+...+.||.|
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 77779999999999999999999999999999877778899987
No 18
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=3.3e-20 Score=137.95 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=76.2
Q ss_pred cCCCccEEEe-c-------CeEEeecccCCCCCCeeecEEEecccCcc-cCCCCEEEEEEEEcCCCCCCceeEEEEEeCC
Q psy12096 76 EIANESMKIA-D-------KVAEETGMPPWVVVSIFIERQILEGVPYA-DAMNKTLVFAIFDFDRFSKHDQIGEVKVALC 146 (173)
Q Consensus 76 ~~~dPyVkv~-~-------~~k~kTkv~kktlnP~wnEtf~F~gV~~~-~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~ 146 (173)
+.+||||+++ . +++++|+++++++||+|||+|.|. |+.+ .+....|.|.|||+|..+++++||++.++|+
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~ 96 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLR 96 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHH
Confidence 4679999998 1 236799999999999999999999 8764 4556789999999998889999999999999
Q ss_pred ccccccccceeEeCccC
Q psy12096 147 QIDLAQTIEEWRELQSV 163 (173)
Q Consensus 147 ~l~~~~~~~~W~~L~p~ 163 (173)
++..++....|++|++.
T Consensus 97 ~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 97 DIAQAGSCACWLPLGRR 113 (120)
T ss_pred HCcCCCcEEEEEECcCc
Confidence 99988888899999775
No 19
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=4.5e-20 Score=135.92 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=91.0
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEeccc-Cccc
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGV-PYAD 116 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV-~~~~ 116 (173)
|+|++++.|.....+|.+.++..+. +..||||+++ ...++||+++++++||+|||+|.|. + +..+
T Consensus 3 G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~~ 81 (125)
T cd04031 3 GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS-NVRRET 81 (125)
T ss_pred EEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEc-ccCHHH
Confidence 7899999999988888877776532 3579999998 1357899999999999999999998 5 3355
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCc
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~ 161 (173)
+....|.|.|||++.++++++||++.++|.+. ......+||+|+
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 66679999999999999999999999999984 344567999996
No 20
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.82 E-value=1.2e-20 Score=143.12 Aligned_cols=110 Identities=17% Similarity=0.298 Sum_probs=93.1
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe----cC---eEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----DK---VAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
++|++++.|....++|.+.|..++. +..|||||++ .+ .++||+++++++||+|||+|.|. |+.++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~ 80 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQ 80 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHH
Confidence 5889999999999999877766532 3569999998 22 36799999999999999999999 99988
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
+...+|.|+|||+++++++++||++.+++.... ..+.++|+++..
T Consensus 81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~ 125 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKE 125 (138)
T ss_pred hCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHh
Confidence 988999999999999999999999999987554 234578988744
No 21
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.82 E-value=9.3e-20 Score=134.01 Aligned_cols=111 Identities=22% Similarity=0.380 Sum_probs=95.3
Q ss_pred cceecchheecccccceeeEEeee--------ccCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIK--------KEIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik--------~~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
|+|.+++.|.....+|.+.|+..+ .+..||||+++ .....+|+++++++||+|||+|.|. ++...+.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~ 79 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQ 79 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhc
Confidence 578899999988888887766542 13469999998 3346789999999999999999999 9887776
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
...|.|.|||++..+++++||++.++|+++........|++|+|
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 67999999999999999999999999999988777789999976
No 22
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.81 E-value=3.2e-20 Score=140.33 Aligned_cols=112 Identities=13% Similarity=0.212 Sum_probs=95.6
Q ss_pred cceecchheecccccceeeEEeeec------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
|+|++++.|....++|.+.|..++. ...||||+++ . ..++||+++++++||+|||+|.|. |+.+++.
T Consensus 2 G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~ 80 (137)
T cd08409 2 GDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSRQLD 80 (137)
T ss_pred cEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHHHhC
Confidence 7899999999988888877766532 3479999998 2 146799999999999999999999 9988898
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
...|.|.|||++.++++++||++.++......+.+.++|.+|...
T Consensus 81 ~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 81 TASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred ccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 889999999999999999999999997766666678899997543
No 23
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.81 E-value=1.5e-19 Score=133.80 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=85.5
Q ss_pred cceecchheecccccceeeEEeeec------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
|+|++++.| ....|.+.|+.++. +..||||+++ ...++||+++++++||.|||+|.|. ++.+++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHhC
Confidence 567777777 34566666655432 3469999998 2347899999999999999999999 9877765
Q ss_pred CCEEEEEEEEcCCCC-CCceeEEEEEeCCccccccccceeEeC
Q psy12096 119 NKTLVFAIFDFDRFS-KHDQIGEVKVALCQIDLAQTIEEWREL 160 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~-~~d~IG~v~l~L~~l~~~~~~~~W~~L 160 (173)
. .|.|+|||++..+ ++++||++.|+|.++..++..+.||.|
T Consensus 78 ~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 78 K-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred C-EEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4 7899999999886 478999999999999867677899976
No 24
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.81 E-value=6.7e-20 Score=138.87 Aligned_cols=109 Identities=11% Similarity=0.215 Sum_probs=88.6
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCC-CCeeecEEEecccCccc
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVV-VSIFIERQILEGVPYAD 116 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktl-nP~wnEtf~F~gV~~~~ 116 (173)
.||.++|+|.+...+|.+.|...+. ...|||||++ +..|+||+++++|+ ||.|||+|.|+ |+.+.
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~ 79 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQE 79 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchh
Confidence 3788999999999998876655432 2347899998 33589999999995 69999999999 99865
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
. +..|.|.|||+++.+++++||++.++.++.. ..+.++|.++..
T Consensus 80 ~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~~ 123 (135)
T cd08692 80 H-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTIA 123 (135)
T ss_pred h-eeEEEEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHHh
Confidence 4 5799999999999999999999999997643 335689988743
No 25
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.80 E-value=2.6e-19 Score=139.25 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=89.6
Q ss_pred ccceecchheeccc------------ccceeeEEeee-------ccCCCccEEEe------cCeEEeecccCCCCCCeee
Q psy12096 50 EEDLEMTEAFEDVS------------EELSSTVASIK-------KEIANESMKIA------DKVAEETGMPPWVVVSIFI 104 (173)
Q Consensus 50 ~~~l~~~~~~~~~~------------~~l~~lv~~ik-------~~~~dPyVkv~------~~~k~kTkv~kktlnP~wn 104 (173)
+|+|.|++.|.... ..|.+.|+..+ .+..||||+++ ...++||+++++++||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 37788888888744 34555555443 13579999987 2357899999999999999
Q ss_pred cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCcc
Q psy12096 105 ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 105 Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p 162 (173)
|+|.|..++..++.+..|.|.|||+|.++++++||++.+++..+......+.|++|..
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999983345566667899999999999999999999999999877767788888754
No 26
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.80 E-value=1.3e-19 Score=136.23 Aligned_cols=111 Identities=17% Similarity=0.351 Sum_probs=93.0
Q ss_pred ccceecchheecccccceeeEEeeec-------cCCCccEEEe---cC---eEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---DK---VAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~~---~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
+|+|.+++.|......|.+.++..+. +..||||+++ .+ .+.||+++++++||.|||+|.|. ++...
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHH
Confidence 48899999999888888877766542 3469999997 22 36799999999999999999999 98877
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
+....|.|+|||+|.++++++||++.+++.. ...+..+|++|...
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 7777899999999999999999999999987 35567899998543
No 27
>KOG1028|consensus
Probab=99.79 E-value=2.9e-19 Score=157.64 Aligned_cols=118 Identities=28% Similarity=0.439 Sum_probs=102.3
Q ss_pred cccceecchheecccccceeeEEeee-------ccCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 49 EEEDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
..|.|++.+.|+...+.|.+.|.... .+..|||||++ ++.|++|+++++|+||+|||+|.|. |+..++
T Consensus 152 ~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l 230 (421)
T KOG1028|consen 152 AVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPYEEL 230 (421)
T ss_pred eeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCHHHh
Confidence 34789999999988888877665442 23469999999 5579999999999999999999999 999999
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCCccc
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 167 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~ 167 (173)
..++|.++|||+|+|++|++||++.++|..++.......|++|++....+
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~ 280 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS 280 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCc
Confidence 99999999999999999999999999999998776678899999874443
No 28
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=4.8e-19 Score=131.25 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=81.0
Q ss_pred cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
+..||||+++ .....||+++++|+||.|||+|.|. |+.. ...|.|.|||++.++++++||.+.++|+++..++.
T Consensus 20 g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~ 95 (121)
T cd08401 20 KMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYG 95 (121)
T ss_pred CCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCC
Confidence 3569999998 3346899999999999999999999 8742 35899999999999999999999999999977777
Q ss_pred cceeEeCccCCccccccCC
Q psy12096 154 IEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 154 ~~~W~~L~p~~~~~~~~~~ 172 (173)
.+.|++|++..+.++.+|+
T Consensus 96 ~~~w~~L~~~~~~~~~~G~ 114 (121)
T cd08401 96 KDTWFPLQPVDADSEVQGK 114 (121)
T ss_pred cEeeEEEEccCCCCcccEE
Confidence 7899999998877777775
No 29
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=9.4e-19 Score=129.83 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=78.5
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc---ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc--
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY---ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID-- 149 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~---~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~-- 149 (173)
+..||||++. .+.++||+++++++||+|||+|.|. ++. ++.....|.|.|||++.++++++||++.++|.++.
T Consensus 18 g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~ 96 (126)
T cd08682 18 GTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDED 96 (126)
T ss_pred cCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhcc
Confidence 4579999998 6668899999999999999999999 875 23455689999999999999999999999999986
Q ss_pred cccccceeEeCccCC-ccccccC
Q psy12096 150 LAQTIEEWRELQSVE-GEGGQIG 171 (173)
Q Consensus 150 ~~~~~~~W~~L~p~~-~~~~~~~ 171 (173)
.+.....||+|.+.. ++.+..|
T Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~G 119 (126)
T cd08682 97 KGRRRTRWFKLESKPGKDDKERG 119 (126)
T ss_pred CCCcccEEEECcCCCCCCccccc
Confidence 445567999998754 3344455
No 30
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=2.7e-19 Score=134.39 Aligned_cols=111 Identities=16% Similarity=0.350 Sum_probs=92.4
Q ss_pred ccceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
+|+|.+++.|......|.+.|+..+. +..||||++. ...+.||+++++++||.|||+|.|. ++.+.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHH
Confidence 38899999999988888887776542 3579999987 1236799999999999999999999 98777
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
+....|.|+|||++.++++++||++.+++... +...++|++|...
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 77778999999999999999999999999876 4456788887443
No 31
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.78 E-value=3.7e-19 Score=134.03 Aligned_cols=111 Identities=17% Similarity=0.283 Sum_probs=90.0
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe--c----CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA--D----KVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~--~----~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
|+|.+++.|......|.+.|+..+. +..||||+++ . ..+++|+++++++||.|||+|.|. ++.+++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHh
Confidence 6789999998888788776665432 3479999988 1 236899999999999999999999 988888
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
....|.|+|||+|..+++++||++.|+..... ..+.++|+.|.+.
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 77789999999999999999999987764443 2246889998654
No 32
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.78 E-value=4.3e-19 Score=132.52 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=91.3
Q ss_pred ceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCC
Q psy12096 52 DLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAM 118 (173)
Q Consensus 52 ~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~ 118 (173)
.|++++.|......|.+.|+..+. +..||||+++ ...+.||+++++++||.|||+|.|. ++..++.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhC
Confidence 378899999988888877776542 3469999998 1346899999999999999999999 9887777
Q ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 119 ~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
...|.|.|||+|..+++++||++.+++... +....+|+++...
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~~ 122 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLKN 122 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHhC
Confidence 779999999999999999999999999853 4456899988654
No 33
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.77 E-value=7.1e-19 Score=131.77 Aligned_cols=110 Identities=19% Similarity=0.352 Sum_probs=91.7
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
|+|.+++.|......|.+.|+..+. +..||||+++ . ..+++|+++++++||.|||+|.|. ++.+.+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHh
Confidence 6899999999988888888776542 3469999997 1 236899999999999999999999 987777
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
....|.|.|||++.++++++||++.+++.. .+++..+|++|...
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~ 123 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLAN 123 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCC--CCchHHHHHHHHHC
Confidence 767899999999999999999999999873 34566889887544
No 34
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.77 E-value=7e-19 Score=132.12 Aligned_cols=110 Identities=18% Similarity=0.363 Sum_probs=92.0
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEec------CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIAD------KVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~~------~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
|+|.+++.|......+.+.|+..+. +..||||+++. ..+++|+++++++||.|||+|.|. ++..++
T Consensus 2 G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l 80 (136)
T cd08402 2 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQI 80 (136)
T ss_pred cEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHHh
Confidence 7899999999988888877765542 34799999981 136789999999999999999999 988777
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
....|.|.|||++.++++++||++.+++... +.+..+|++|...
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 7778999999999999999999999999764 4566888887544
No 35
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=9.6e-18 Score=123.67 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=78.7
Q ss_pred CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096 77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 155 (173)
Q Consensus 77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~ 155 (173)
..||||+++ ...+.+|+++++++||.|||+|.|. +.... ...|.|.|||++.++++++||++.++|.++......+
T Consensus 20 ~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~ 96 (123)
T cd04025 20 TSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEE 96 (123)
T ss_pred CcCceEEEEECCEEEeceeecCCCCCccCcEEEEE-cCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCC
Confidence 569999999 5667899999999999999999999 76533 4589999999999999999999999999987666678
Q ss_pred eeEeCccCCccccccCC
Q psy12096 156 EWRELQSVEGEGGQIGK 172 (173)
Q Consensus 156 ~W~~L~p~~~~~~~~~~ 172 (173)
.|++|.+....+++-||
T Consensus 97 ~w~~L~~~~~~~~~~~~ 113 (123)
T cd04025 97 GWFRLLPDPRAEEESGG 113 (123)
T ss_pred CEEECCCCCCCCccccC
Confidence 99999987655555544
No 36
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=2.5e-18 Score=132.14 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=76.9
Q ss_pred cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccC-------------cccCCCCEEEEEEEEcCCCCCCc
Q psy12096 76 EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVP-------------YADAMNKTLVFAIFDFDRFSKHD 136 (173)
Q Consensus 76 ~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~-------------~~~l~~~~L~~~V~D~d~~~~~d 136 (173)
+..||||+++ +..++||+++++|+||+|||+|.|. +. .+++....|.|.|||++.+++++
T Consensus 17 g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~dd 95 (148)
T cd04010 17 GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDV 95 (148)
T ss_pred CCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccEEEEEEEEEcCCCCCCCc
Confidence 4679999998 1257899999999999999999999 74 34555568999999999999999
Q ss_pred eeEEEEEeCCccccc-cccceeEeCccCCccc
Q psy12096 137 QIGEVKVALCQIDLA-QTIEEWRELQSVEGEG 167 (173)
Q Consensus 137 ~IG~v~l~L~~l~~~-~~~~~W~~L~p~~~~~ 167 (173)
|||++.|+|..+... .....||+|+++..-+
T Consensus 96 fLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 96 FLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred eeEEEEEecccccccCCcCcceeecCCccccc
Confidence 999999999999866 5678999999875444
No 37
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=6.5e-18 Score=125.46 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=78.7
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc-ccCCCCEEEEEEEEcCCCC-CCceeEEEEEeCCccc-cc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY-ADAMNKTLVFAIFDFDRFS-KHDQIGEVKVALCQID-LA 151 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~-~~l~~~~L~~~V~D~d~~~-~~d~IG~v~l~L~~l~-~~ 151 (173)
+..||||+++ ...++||+++++++||.|||+|.|. +.. ..+....|.|.|||+++++ ++++||++.++|..+. .+
T Consensus 19 g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~ 97 (127)
T cd04022 19 GSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPS 97 (127)
T ss_pred CCcCcEEEEEECCEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCC
Confidence 4569999998 5668899999999999999999999 764 3344568999999999987 8999999999999886 34
Q ss_pred cccceeEeCccCCccccccC
Q psy12096 152 QTIEEWRELQSVEGEGGQIG 171 (173)
Q Consensus 152 ~~~~~W~~L~p~~~~~~~~~ 171 (173)
.....||+|+.+...++++|
T Consensus 98 ~~~~~w~~L~~~~~~~~~~G 117 (127)
T cd04022 98 EAVVQRYPLEKRGLFSRVRG 117 (127)
T ss_pred CccceEeEeeeCCCCCCccE
Confidence 55679999987655555666
No 38
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.73 E-value=7.3e-18 Score=125.15 Aligned_cols=111 Identities=18% Similarity=0.324 Sum_probs=93.5
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
|+|++++.|.....+|.+.|+..+. +..||||+++ . ..+++|++++++.||.|||+|.|. ++...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHh
Confidence 6789999999888888877766532 3569999988 1 236799999999999999999999 988776
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccCC
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~ 164 (173)
....|.|.|||++.++++++||++.+++++ .+...++|++|....
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 667999999999999999999999999998 466778999997664
No 39
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=3.7e-17 Score=122.54 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=73.6
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCC------CCceeEEEEEeCCcc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS------KHDQIGEVKVALCQI 148 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~------~~d~IG~v~l~L~~l 148 (173)
+..||||.+. ...+.||+++++++||+|||+|.|. +... ...|.|.|||++.++ .+++||++.++|..+
T Consensus 22 g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l 97 (126)
T cd08379 22 GSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTL 97 (126)
T ss_pred CCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHc
Confidence 4579999998 6668899999999999999999999 7532 238999999999874 899999999999999
Q ss_pred ccccccceeEeCccCC
Q psy12096 149 DLAQTIEEWRELQSVE 164 (173)
Q Consensus 149 ~~~~~~~~W~~L~p~~ 164 (173)
..+...+.||+|.+..
T Consensus 98 ~~~~~~~~~~~L~~~~ 113 (126)
T cd08379 98 EDDRVYAHSYPLLSLN 113 (126)
T ss_pred cCCCEEeeEEEeEeCC
Confidence 8777778999998654
No 40
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.72 E-value=4.6e-17 Score=121.20 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=72.6
Q ss_pred cCCCccEEEe-cCeEEeecccCC-CCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCC-cccccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPW-VVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC-QIDLAQ 152 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kk-tlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~-~l~~~~ 152 (173)
+..||||++. .+.+.||+++.+ ++||.|||+|.|. ++.. ...|.|.|||+|.+++|++||.+.++|. .+..++
T Consensus 20 g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~ 95 (121)
T cd04016 20 TRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGE 95 (121)
T ss_pred CCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCC
Confidence 4579999999 666789999876 7999999999999 8642 2479999999999999999999999996 566666
Q ss_pred ccceeEeCccCC
Q psy12096 153 TIEEWRELQSVE 164 (173)
Q Consensus 153 ~~~~W~~L~p~~ 164 (173)
..+.|++|++..
T Consensus 96 ~~~~W~~L~~~~ 107 (121)
T cd04016 96 TLDDWYSLSGKQ 107 (121)
T ss_pred CccccEeCcCcc
Confidence 679999998754
No 41
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.72 E-value=9e-17 Score=119.67 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=74.5
Q ss_pred cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
...||||+++ .. .+.||++. +++||.|||+|.|. +...++ ..+.|.|||++.++++++||++.++|..+..+..
T Consensus 20 ~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~ 95 (126)
T cd08400 20 HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQE 95 (126)
T ss_pred CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCc
Confidence 3579999998 33 45789874 68999999999998 655443 3688999999999999999999999999987777
Q ss_pred cceeEeCccCCc-cccccC
Q psy12096 154 IEEWRELQSVEG-EGGQIG 171 (173)
Q Consensus 154 ~~~W~~L~p~~~-~~~~~~ 171 (173)
.+.|+.|.+... ..+..|
T Consensus 96 ~~~W~~L~~~~~~~~~~~G 114 (126)
T cd08400 96 TDEWYPLSSASPLKGGEWG 114 (126)
T ss_pred ccEeEEcccCCCCCCCcCc
Confidence 789999998754 334444
No 42
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.72 E-value=8.6e-17 Score=118.37 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=76.6
Q ss_pred cCCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
+..||||++. . +...+|+++++++||.|||+|.|. +.. . ...|.|.|||+|.++++++||++.++|.++..+..
T Consensus 19 g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~-v~~--~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~ 94 (121)
T cd04042 19 GTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLP-IED--V-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKP 94 (121)
T ss_pred CCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEE-ecC--C-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCC
Confidence 4579999998 3 357899999999999999999999 753 2 35899999999999999999999999999987777
Q ss_pred cceeEeCccCCccccccC
Q psy12096 154 IEEWRELQSVEGEGGQIG 171 (173)
Q Consensus 154 ~~~W~~L~p~~~~~~~~~ 171 (173)
.+.|++|.+... .+..|
T Consensus 95 ~~~~~~L~~~~~-~~~~G 111 (121)
T cd04042 95 TEVKLKLEDPNS-DEDLG 111 (121)
T ss_pred eEEEEECCCCCC-ccCce
Confidence 889999976554 34444
No 43
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=8.8e-17 Score=118.51 Aligned_cols=109 Identities=24% Similarity=0.261 Sum_probs=88.4
Q ss_pred cceecchheecccccceeeEEeeec-------cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
|+|++++.|......|.+.|+..+. +..||||+++ ...+.+|++++++.||.|||+|.|..+...++
T Consensus 2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~ 81 (123)
T cd04035 2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI 81 (123)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence 7899999999988888777665532 3569999987 23478999999999999999999962554556
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L 160 (173)
....|.|.|||++.+ .+++||++.++|+++......+.|++|
T Consensus 82 ~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 82 QRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 567899999999998 889999999999999766555666654
No 44
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=4.6e-17 Score=118.30 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=75.2
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCee-ecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc---
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIF-IERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL--- 150 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~w-nEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~--- 150 (173)
+..||||+++ ...+.||+++++++||.| ||+|.|. ++...+....|.|.|||++.++++++||++.++|.++..
T Consensus 19 ~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~ 97 (110)
T cd08688 19 DLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDS 97 (110)
T ss_pred CCCCceEEEEECCeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCC
Confidence 4569999999 557899999999999999 9999999 987766667999999999999999999999999999865
Q ss_pred ccccceeEeCcc
Q psy12096 151 AQTIEEWRELQS 162 (173)
Q Consensus 151 ~~~~~~W~~L~p 162 (173)
....+.||+|..
T Consensus 98 ~~~~~~w~~l~~ 109 (110)
T cd08688 98 VSQISGWFPIYD 109 (110)
T ss_pred ccccCCeEEccc
Confidence 234678999864
No 45
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.70 E-value=1e-16 Score=116.78 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=75.2
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI 154 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~ 154 (173)
+..||||+++ .+.+.||+++++|+||.|||+|.|. +... ....|.|.|||++.++++++||++.++|+++..+...
T Consensus 19 ~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~ 95 (116)
T cd08376 19 GLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTH 95 (116)
T ss_pred CCCCcEEEEEECCEeEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCce
Confidence 3569999999 5668999999999999999999999 7643 2468999999999999999999999999998877777
Q ss_pred ceeEeCccC
Q psy12096 155 EEWRELQSV 163 (173)
Q Consensus 155 ~~W~~L~p~ 163 (173)
+.|++|++.
T Consensus 96 ~~w~~L~~~ 104 (116)
T cd08376 96 SLELELEDG 104 (116)
T ss_pred EEEEEccCC
Confidence 899999876
No 46
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.70 E-value=1.5e-16 Score=117.81 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=74.4
Q ss_pred CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc---
Q psy12096 77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--- 152 (173)
Q Consensus 77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~--- 152 (173)
..||||+++ ...+.||+++++++||.|||+|.|. +.. +....|.|+|||+|.+ ++++||++.++|+.+....
T Consensus 16 ~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~-~~~--~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~ 91 (121)
T cd08378 16 SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFS-KDR--LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPD 91 (121)
T ss_pred cCCCEEEEEECCccccccccCCCCCCccceEEEEE-cCC--CcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCC
Confidence 679999999 5568899999999999999999999 653 3456899999999987 7899999999999986532
Q ss_pred --ccceeEeCccCCccccccC
Q psy12096 153 --TIEEWRELQSVEGEGGQIG 171 (173)
Q Consensus 153 --~~~~W~~L~p~~~~~~~~~ 171 (173)
..+.||+|++... ++..|
T Consensus 92 ~~~~~~W~~L~~~~~-~~~~G 111 (121)
T cd08378 92 SPLAPQWYRLEDKKG-GRVGG 111 (121)
T ss_pred CCCCcceEEccCCCC-Cccce
Confidence 2468999998765 44444
No 47
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.69 E-value=1.9e-16 Score=117.57 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=77.1
Q ss_pred cCCCccEEEe-c--CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc
Q psy12096 76 EIANESMKIA-D--KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 152 (173)
Q Consensus 76 ~~~dPyVkv~-~--~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~ 152 (173)
+..|||++++ . ..+.||+++++++||.|||+|.|. +... ...|.|.|||++..+++++||++.++++.+....
T Consensus 16 g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~ 91 (126)
T cd08678 16 GSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNP 91 (126)
T ss_pred CCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCC
Confidence 4789999998 2 457899999999999999999999 8532 4589999999999999999999999999987666
Q ss_pred ccceeEeCccCCc-cccccC
Q psy12096 153 TIEEWRELQSVEG-EGGQIG 171 (173)
Q Consensus 153 ~~~~W~~L~p~~~-~~~~~~ 171 (173)
....|++|++... ..++.|
T Consensus 92 ~~~~~~~L~~~~~~~~~~~G 111 (126)
T cd08678 92 SGRQIFPLQGRPYEGDSVSG 111 (126)
T ss_pred ceeEEEEecCCCCCCCCcce
Confidence 6789999998743 234454
No 48
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=1.3e-16 Score=123.57 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=74.3
Q ss_pred ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcc------cCCCCEEEEEEEEcCCC-CCCceeEEE
Q psy12096 75 KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYA------DAMNKTLVFAIFDFDRF-SKHDQIGEV 141 (173)
Q Consensus 75 ~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~------~l~~~~L~~~V~D~d~~-~~~d~IG~v 141 (173)
.+..||||+++ ...+.||+++++|+||+|||+|.|. |+.. .+....|.|.|||++.+ ++|++||++
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~ 100 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTA 100 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEE
Confidence 34679999997 3458999999999999999999999 8765 35567899999999987 579999999
Q ss_pred EEeCCccccccccceeEeCcc
Q psy12096 142 KVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 142 ~l~L~~l~~~~~~~~W~~L~p 162 (173)
.++|..+........|++|..
T Consensus 101 ~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 101 QVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEEcccccccCcceEEEEhhh
Confidence 999999976667778999863
No 49
>KOG0905|consensus
Probab=99.68 E-value=1.3e-17 Score=157.49 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=112.1
Q ss_pred hhhhhhccCCcccCCCCCCCccc----------------------ceecchheecccccceeeEEeee-------ccCCC
Q psy12096 29 ADSIKRKTQATTTTTPLPEDEEE----------------------DLEMTEAFEDVSEELSSTVASIK-------KEIAN 79 (173)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~l~~~~~~~~~~~~l~~lv~~ik-------~~~~d 79 (173)
-++|++.+.+||||||+++||.. ++.+++.|. ...|..+|..+| .+..|
T Consensus 1469 s~EVa~cDlVyTFFhpllrDe~~~gsp~~~~~~~~ps~~p~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~ 1546 (1639)
T KOG0905|consen 1469 SDEVAHCDLVYTFFHPLLRDEKKEGSPAIKESKGMPSRNPGEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPD 1546 (1639)
T ss_pred CchhhccceeeeeechhhhhhhhcCCccccccccCCCCCccccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCC
Confidence 36899999999999999999542 344555555 344555554444 24579
Q ss_pred ccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 80 ESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 80 PyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
||||.+ +..|+||+++++|+||.|||++.|+|++.+.+.++.|+++||..+.+..+.++|.+.++|.++++.++
T Consensus 1547 pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE 1626 (1639)
T KOG0905|consen 1547 PYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE 1626 (1639)
T ss_pred cceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh
Confidence 999999 44589999999999999999999999999999989999999999999999999999999999999988
Q ss_pred cceeEeCccC
Q psy12096 154 IEEWRELQSV 163 (173)
Q Consensus 154 ~~~W~~L~p~ 163 (173)
...||.|...
T Consensus 1627 ~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1627 SVGWYNLGAC 1636 (1639)
T ss_pred hcceeecccc
Confidence 8899999754
No 50
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=2.6e-16 Score=115.47 Aligned_cols=84 Identities=12% Similarity=0.170 Sum_probs=72.9
Q ss_pred cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 76 EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 76 ~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
+..||||++. ...++||++++++.||.|||+|.|. +... ....|.|.|||+|.+ ++++||++.+++..+..+
T Consensus 19 ~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g 94 (119)
T cd04036 19 STPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLG 94 (119)
T ss_pred CCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCC
Confidence 3579999998 2457899999999999999999999 8654 234799999999998 899999999999999877
Q ss_pred cccceeEeCccC
Q psy12096 152 QTIEEWRELQSV 163 (173)
Q Consensus 152 ~~~~~W~~L~p~ 163 (173)
.....|++|.+.
T Consensus 95 ~~~~~~~~L~~~ 106 (119)
T cd04036 95 EKVRVTFSLNPQ 106 (119)
T ss_pred CcEEEEEECCCC
Confidence 778899999875
No 51
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.68 E-value=3.1e-16 Score=117.63 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=83.0
Q ss_pred ccceecchheecccccceeeEEeeec-------cCCCccEEEe----c----CeEEeecccCCCCCCeeecEEEecccCc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIKK-------EIANESMKIA----D----KVAEETGMPPWVVVSIFIERQILEGVPY 114 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik~-------~~~dPyVkv~----~----~~k~kTkv~kktlnP~wnEtf~F~gV~~ 114 (173)
.|+|.+++.|....+.+.+.|+..+. +..||||+++ . ..++||+++++|+||+|||+|.|. +..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~ 80 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VPP 80 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-ech
Confidence 47899999999887788777765532 3579999998 1 347999999999999999999999 865
Q ss_pred cc--CCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 115 AD--AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 115 ~~--l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
.+ .....|.|.|||+++++++++||++.++|+++..
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 32 3456899999999999999999999999998863
No 52
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.67 E-value=5.1e-16 Score=114.64 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=76.4
Q ss_pred cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc-c
Q psy12096 76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-Q 152 (173)
Q Consensus 76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~-~ 152 (173)
+..||||++. .. ...||+++++++||.|||.|.|. ++.. ...|.|.|||++.++++++||++.++++.+... .
T Consensus 19 g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~ 94 (121)
T cd04054 19 GSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPR 94 (121)
T ss_pred CCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCC
Confidence 4569999998 33 34799999999999999999999 7642 358999999999999999999999998877533 2
Q ss_pred ccceeEeCccCCccccccCC
Q psy12096 153 TIEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 153 ~~~~W~~L~p~~~~~~~~~~ 172 (173)
..+.|++|++..+.+++.|+
T Consensus 95 ~~~~W~~L~~~~~~~~~~G~ 114 (121)
T cd04054 95 GIDGWMNLTEVDPDEEVQGE 114 (121)
T ss_pred CCCcEEECeeeCCCCccccE
Confidence 36799999987776666664
No 53
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.9e-16 Score=115.73 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=75.2
Q ss_pred cCCCccEEEe--cC------eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096 76 EIANESMKIA--DK------VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ 147 (173)
Q Consensus 76 ~~~dPyVkv~--~~------~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~ 147 (173)
+..||||+++ .. .+.+|+++++++||.|||+|.|. +... ...|.|.|||++.++++++||++.+++.+
T Consensus 19 ~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 19 GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 3579999998 21 25799999999999999999999 8642 35799999999999999999999999998
Q ss_pred cccccc------cceeEeCccCCccccccC
Q psy12096 148 IDLAQT------IEEWRELQSVEGEGGQIG 171 (173)
Q Consensus 148 l~~~~~------~~~W~~L~p~~~~~~~~~ 171 (173)
+..... ...||.|++....++..|
T Consensus 95 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G 124 (133)
T cd04033 95 LPTETPGNERRYTFKDYLLRPRSSKSRVKG 124 (133)
T ss_pred CCCcCccccccccchheeeeecCCCCccee
Confidence 865432 248999998766666666
No 54
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=6e-16 Score=114.77 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=77.2
Q ss_pred ccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 75 KEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 75 ~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
.+..||||+++ ...+++|++++++.||.|||+|.|. +.........|.|.|||++.++++++||++.++|+++..++.
T Consensus 12 ~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 90 (127)
T cd08373 12 KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL 90 (127)
T ss_pred CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCc
Confidence 35679999999 5567899999999999999999999 865434457899999999999999999999999999987777
Q ss_pred cceeEeCccCCc
Q psy12096 154 IEEWRELQSVEG 165 (173)
Q Consensus 154 ~~~W~~L~p~~~ 165 (173)
...|++|.+...
T Consensus 91 ~~~~~~L~~~~~ 102 (127)
T cd08373 91 LEVTEPLLDSNG 102 (127)
T ss_pred eEEEEeCcCCCC
Confidence 788999976543
No 55
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.65 E-value=6e-16 Score=117.09 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=77.9
Q ss_pred cCCCccEEEe-c----CeEEeecccCCCCCCeeecEEEecccCcc-------------cCCCCEEEEEEEEcCCCCCCce
Q psy12096 76 EIANESMKIA-D----KVAEETGMPPWVVVSIFIERQILEGVPYA-------------DAMNKTLVFAIFDFDRFSKHDQ 137 (173)
Q Consensus 76 ~~~dPyVkv~-~----~~k~kTkv~kktlnP~wnEtf~F~gV~~~-------------~l~~~~L~~~V~D~d~~~~~d~ 137 (173)
+..||||+++ . ..+.+|++++++.||.|||+|.|. +... ++....|.|.|||++.++++++
T Consensus 17 g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 17 GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF 95 (137)
T ss_pred CCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence 4679999998 3 668999999999999999999999 7653 3456789999999999999999
Q ss_pred eEEEEEeCCccccccccceeEeCccCCccc
Q psy12096 138 IGEVKVALCQIDLAQTIEEWRELQSVEGEG 167 (173)
Q Consensus 138 IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~ 167 (173)
||++.++|..+........||.|++....+
T Consensus 96 IG~~~i~l~~l~~~~~~~~W~~L~~~~~~~ 125 (137)
T cd08675 96 LGEVRIPLQGLQQAGSHQAWYFLQPREAPG 125 (137)
T ss_pred EEEEEEehhhccCCCcccceEecCCcCCCC
Confidence 999999999987666678999999986443
No 56
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.65 E-value=6.3e-16 Score=114.00 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=76.7
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc---c
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL---A 151 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~---~ 151 (173)
+..||||++. ...+.+|+++++++||.|||+|.|. +.. .....|.|.|||++.++.+++||++.++|.++.. .
T Consensus 22 ~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~ 98 (128)
T cd04024 22 GKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKT 98 (128)
T ss_pred CCcCCeEEEEECCEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhccccc
Confidence 4569999998 5678999999999999999999999 764 3356899999999999999999999999998852 2
Q ss_pred cccceeEeCccCCcc--ccccCC
Q psy12096 152 QTIEEWRELQSVEGE--GGQIGK 172 (173)
Q Consensus 152 ~~~~~W~~L~p~~~~--~~~~~~ 172 (173)
.....||.|.+.... +.++|.
T Consensus 99 ~~~~~w~~L~~~~~~~~~~~~G~ 121 (128)
T cd04024 99 GQSDKWITLKSTRPGKTSVVSGE 121 (128)
T ss_pred CccceeEEccCcccCccccccce
Confidence 335789999887433 345653
No 57
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.65 E-value=1.2e-15 Score=113.49 Aligned_cols=109 Identities=16% Similarity=0.330 Sum_probs=85.4
Q ss_pred ccceecchheecccccceeeEEeee-------ccCCCccEEEe-c-----CeEEeecccCCCCCCeeecEEEecccCccc
Q psy12096 50 EEDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA-D-----KVAEETGMPPWVVVSIFIERQILEGVPYAD 116 (173)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~-~-----~~k~kTkv~kktlnP~wnEtf~F~gV~~~~ 116 (173)
+|+|.+++.|.. ..+...++..+ ....||||++. . ..+.+|++++++.||.|||+|.|. +...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~ 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence 377888888877 33444444432 13479999988 1 357999999999999999999999 87644
Q ss_pred CCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 117 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 117 l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
. ...|.|.|||++.++.+++||++.++|.++.. ...+.||+|...
T Consensus 78 ~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~w~~L~~~ 122 (131)
T cd04026 78 K-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQ 122 (131)
T ss_pred c-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCc-CccCceEECcCc
Confidence 3 35899999999999999999999999998863 367899999553
No 58
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.64 E-value=1e-15 Score=111.85 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=70.6
Q ss_pred cCCCccEEEe-cCeEEeecccC-CCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPP-WVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
+..||||+++ ...+.+|+++. +++||.|||+|.|. ++.. ....|.|.|||++..+ +++||++.+++.++.....
T Consensus 20 ~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 95 (118)
T cd08681 20 DKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGE 95 (118)
T ss_pred CCCCceEEEEECCCccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCC
Confidence 3569999998 55678888875 47999999999999 8764 2458999999999877 8999999999998865666
Q ss_pred cceeEeCccCC
Q psy12096 154 IEEWRELQSVE 164 (173)
Q Consensus 154 ~~~W~~L~p~~ 164 (173)
...|++|....
T Consensus 96 ~~~w~~L~~~~ 106 (118)
T cd08681 96 FDDWYELTLKG 106 (118)
T ss_pred CCCcEEeccCC
Confidence 78999997643
No 59
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=2e-15 Score=113.25 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc-
Q psy12096 77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI- 154 (173)
Q Consensus 77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~- 154 (173)
..||||++. .+.|.+|++.+++ ||.|||+|.|. +.. .. ..|.|.|||.|.+ .||+||++.++|+++..++..
T Consensus 19 ~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~-~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~ 92 (127)
T cd08394 19 KFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFE-INR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEG 92 (127)
T ss_pred CCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEE-EcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCC
Confidence 458999998 6678899999884 99999999999 743 33 3599999999865 899999999999998655544
Q ss_pred -ceeEeCccC--CccccccCC
Q psy12096 155 -EEWRELQSV--EGEGGQIGK 172 (173)
Q Consensus 155 -~~W~~L~p~--~~~~~~~~~ 172 (173)
..||.|+|. .+.+.+.|+
T Consensus 93 ~~~Wy~L~~~~~~~~~~~~~~ 113 (127)
T cd08394 93 PGEWLTLDSEVNMKNGQIVGT 113 (127)
T ss_pred CCccEecChHHhccCCeEecc
Confidence 689999875 455555554
No 60
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.64 E-value=2.3e-15 Score=115.79 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=71.6
Q ss_pred cCCCccEEEe-cCeEEeecccCC-CCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc--
Q psy12096 76 EIANESMKIA-DKVAEETGMPPW-VVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-- 151 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kk-tlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~-- 151 (173)
+..||||++. ...+.||++..+ ++||+|||+|.|. ++.. ....|.|.|||++..+++++||++.++|+++...
T Consensus 19 g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~-v~~~--~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~ 95 (150)
T cd04019 19 RVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFV-AAEP--FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVD 95 (150)
T ss_pred CCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEE-ecCc--cCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCC
Confidence 4579999999 567889998876 6999999999999 8642 2358999999999999999999999999998532
Q ss_pred --cccceeEeCccCC
Q psy12096 152 --QTIEEWRELQSVE 164 (173)
Q Consensus 152 --~~~~~W~~L~p~~ 164 (173)
...+.||+|+...
T Consensus 96 ~~~~~~~W~~L~~~~ 110 (150)
T cd04019 96 DRPVPSRWFSLERPG 110 (150)
T ss_pred CCccCCceEECcCCC
Confidence 3357999998765
No 61
>KOG1030|consensus
Probab=99.64 E-value=3.5e-16 Score=121.50 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=64.7
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
+..||||.+. .+++.||+++.+++||.|||.|.|. |+.. ...|.++|||+|.++++|+||.+.|+|..+...
T Consensus 25 ~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~-v~d~---~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 25 GSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFT-VKDP---NTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred cCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEE-ecCC---CceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence 5679999998 7889999999999999999999999 8753 358999999999999999999999999988543
No 62
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.63 E-value=2.1e-15 Score=108.57 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=69.7
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc--
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-- 152 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~-- 152 (173)
+..||||++. .+.++||++++++.||.|||+|.|. +.... ...|.|.|||++. +++||++.++|.++...+
T Consensus 19 ~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~ 92 (105)
T cd04050 19 KEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFL-VRNPE--NQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDL 92 (105)
T ss_pred CCCCcEEEEEECCEEEeCccccCCCCCcccceEEEE-eCCCC--CCEEEEEEEECCC---CCccEEEEEEHHHhhccccc
Confidence 4679999998 5678999999999999999999999 87533 3479999999886 789999999999886443
Q ss_pred ccceeEeCccCC
Q psy12096 153 TIEEWRELQSVE 164 (173)
Q Consensus 153 ~~~~W~~L~p~~ 164 (173)
..+.||+|+...
T Consensus 93 ~~~~w~~L~~~g 104 (105)
T cd04050 93 TLDQPFPLDNSG 104 (105)
T ss_pred eeeeeEecCCCC
Confidence 457999997653
No 63
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.63 E-value=1.4e-15 Score=113.13 Aligned_cols=91 Identities=13% Similarity=0.260 Sum_probs=76.2
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC-----------CCCceeEEEEE
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF-----------SKHDQIGEVKV 143 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~-----------~~~d~IG~v~l 143 (173)
+..||||+++ ...+.+|+++++++||.|||+|.|. +... ...|.|.|||+|.. +.+++||++.+
T Consensus 20 g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i 95 (127)
T cd04027 20 GTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTII 95 (127)
T ss_pred CCcCcEEEEEECCEeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEE
Confidence 3469999998 5567899999999999999999998 6432 34799999999853 46899999999
Q ss_pred eCCccccccccceeEeCccCCccccccCC
Q psy12096 144 ALCQIDLAQTIEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 144 ~L~~l~~~~~~~~W~~L~p~~~~~~~~~~ 172 (173)
++..+. .....||.|++....++++|+
T Consensus 96 ~l~~~~--~~~~~w~~L~~~~~~~~~~G~ 122 (127)
T cd04027 96 EVRTLS--GEMDVWYNLEKRTDKSAVSGA 122 (127)
T ss_pred EhHHcc--CCCCeEEECccCCCCCcEeEE
Confidence 998774 346799999999888889885
No 64
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.8e-15 Score=116.69 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=75.3
Q ss_pred ccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 75 KEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 75 ~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
....||||++. ...+.||+++++++||+|||+|.|. +..+... ..|.|+|||+|..+++++||++.++|.++...+.
T Consensus 32 ~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 32 KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFP-EMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred CCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEE-eeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 45679999999 5667899999999999999999999 7654443 4899999999999999999999999998864432
Q ss_pred -------cceeEeCccCCccccc
Q psy12096 154 -------IEEWRELQSVEGEGGQ 169 (173)
Q Consensus 154 -------~~~W~~L~p~~~~~~~ 169 (173)
...|+.|....+...-
T Consensus 110 ~~~lp~~~p~W~~lyg~~~~~~~ 132 (151)
T cd04018 110 EGFLPTFGPSFVNLYGSPREYSL 132 (151)
T ss_pred cccCCccCceEEEeecCcccccc
Confidence 1479998665554443
No 65
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.63 E-value=1e-15 Score=111.51 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=63.4
Q ss_pred CCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 78 ANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 78 ~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
.||||+++ .++++||+++++++||+|||+|.|. +...+. ...|.|.|||+|.++++++||++.++|+.+..+
T Consensus 26 ~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 26 MDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred cCceEEEEECCEeEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence 69999999 5667899999999999999999999 865443 358999999999999999999999999988533
No 66
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=9.8e-16 Score=111.22 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=72.0
Q ss_pred ccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc--ccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 75 KEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY--ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 75 ~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~--~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
.+..||||++. ...+++|+++++++||.|||+|.|. +.. .++....|.|+|||++.++++++||++.++|+.+...
T Consensus 18 ~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~ 96 (111)
T cd04011 18 GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQ 96 (111)
T ss_pred CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCC
Confidence 45679999998 5667899999999999999999998 643 3344568999999999999999999999999988544
Q ss_pred c---ccceeEeCcc
Q psy12096 152 Q---TIEEWRELQS 162 (173)
Q Consensus 152 ~---~~~~W~~L~p 162 (173)
. -...|+.|..
T Consensus 97 ~~~~~~~~w~~L~~ 110 (111)
T cd04011 97 PDHAFLRKWLLLTD 110 (111)
T ss_pred CCCcceEEEEEeeC
Confidence 2 2367999864
No 67
>KOG0696|consensus
Probab=99.62 E-value=1.7e-16 Score=138.80 Aligned_cols=86 Identities=16% Similarity=0.373 Sum_probs=75.0
Q ss_pred ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096 75 KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 148 (173)
Q Consensus 75 ~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l 148 (173)
++.+||||++. ...|+||++++.++||+|||+|.|. +...+.. +.|.|.|||||+.++|||+|...+.++.+
T Consensus 198 NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl 275 (683)
T KOG0696|consen 198 NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISEL 275 (683)
T ss_pred CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHH
Confidence 35679999987 4468999999999999999999999 8776654 68999999999999999999999999988
Q ss_pred ccccccceeEeCccC
Q psy12096 149 DLAQTIEEWRELQSV 163 (173)
Q Consensus 149 ~~~~~~~~W~~L~p~ 163 (173)
. ....+.||.|...
T Consensus 276 ~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 276 Q-KAPVDGWYKLLSQ 289 (683)
T ss_pred h-hcchhhHHHHhhh
Confidence 6 4467899998654
No 68
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.62 E-value=2.9e-15 Score=109.31 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=72.4
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI 154 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~ 154 (173)
+..||||+++ .+...+|++++++.||.|||+|.|. +... ....|.|.|||++.. ++++||++.++|.++......
T Consensus 26 g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~ 101 (121)
T cd08391 26 GKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFI 101 (121)
T ss_pred CCcCCEEEEEECCEeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCcc
Confidence 4579999999 5578999999999999999999998 7542 346899999999988 889999999999998766566
Q ss_pred ceeEeCccC
Q psy12096 155 EEWRELQSV 163 (173)
Q Consensus 155 ~~W~~L~p~ 163 (173)
+.|++|.+.
T Consensus 102 ~~w~~L~~~ 110 (121)
T cd08391 102 DEWLPLEDV 110 (121)
T ss_pred ceEEECcCC
Confidence 899999865
No 69
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.62 E-value=3.3e-15 Score=110.60 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=73.4
Q ss_pred cCCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCC--CceeEEEEEeCCccccc
Q psy12096 76 EIANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSK--HDQIGEVKVALCQIDLA 151 (173)
Q Consensus 76 ~~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~--~d~IG~v~l~L~~l~~~ 151 (173)
+..|||++++ . ..++||+++++++||.|||+|.|. ++. ...|.|.|||++.++. +++||++.+++.++...
T Consensus 19 ~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~ 93 (123)
T cd08382 19 RLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPL 93 (123)
T ss_pred CCCCcEEEEEECCccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHcccc
Confidence 3569999999 3 567899999999999999999999 864 4589999999999876 47999999999998533
Q ss_pred c-ccceeEeCccCCc--cccccC
Q psy12096 152 Q-TIEEWRELQSVEG--EGGQIG 171 (173)
Q Consensus 152 ~-~~~~W~~L~p~~~--~~~~~~ 171 (173)
. ....|++|.+... .+.+.|
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~G 116 (123)
T cd08382 94 KDTGYQRLDLRKLKKSDNLSVRG 116 (123)
T ss_pred CCCccceeEeecCCCCCCceEee
Confidence 3 3478999976654 334444
No 70
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.61 E-value=4.7e-15 Score=108.17 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=75.6
Q ss_pred CCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096 77 IANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 155 (173)
Q Consensus 77 ~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~ 155 (173)
..||||+++ ...+.+|++++++.||.|||+|.|. +.. + ...|.|.|||++.++++++||++.+++..+..+ ..
T Consensus 21 ~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~ 94 (119)
T cd08377 21 KSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG--ER 94 (119)
T ss_pred CCCcEEEEEECCEeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC--Cc
Confidence 469999998 5557899999999999999999999 753 2 358999999999999999999999999887533 46
Q ss_pred eeEeCccCCccccccCC
Q psy12096 156 EWRELQSVEGEGGQIGK 172 (173)
Q Consensus 156 ~W~~L~p~~~~~~~~~~ 172 (173)
.|+.|.+....++..|+
T Consensus 95 ~~~~l~~~~~~~~~~G~ 111 (119)
T cd08377 95 KWYALKDKKLRTRAKGS 111 (119)
T ss_pred eEEECcccCCCCceeeE
Confidence 89999887766666664
No 71
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=1.7e-15 Score=110.21 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=68.5
Q ss_pred cCCCccEEEe----cCeEEeecccCCCCCCeeecEEEecccCcccC-CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 76 EIANESMKIA----DKVAEETGMPPWVVVSIFIERQILEGVPYADA-MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 76 ~~~dPyVkv~----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l-~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
+..||||+++ .+...+|+++++++||.|||+|.|. +...++ ....|.|.|||+|+++++++||++.+++.++.
T Consensus 21 ~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~- 98 (111)
T cd04041 21 GSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI- 98 (111)
T ss_pred CCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh-
Confidence 4579999997 2346899999999999999999998 765443 34689999999999999999999999999886
Q ss_pred ccccceeEeCc
Q psy12096 151 AQTIEEWRELQ 161 (173)
Q Consensus 151 ~~~~~~W~~L~ 161 (173)
....|+++.
T Consensus 99 --~~~~~~~~~ 107 (111)
T cd04041 99 --EDRNWMGRR 107 (111)
T ss_pred --cCCCCCccc
Confidence 235688774
No 72
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.60 E-value=4.7e-15 Score=110.71 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=70.3
Q ss_pred CCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc--cc
Q psy12096 77 IANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL--AQ 152 (173)
Q Consensus 77 ~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~--~~ 152 (173)
..||||+++ .. ...+|++++++.||.|||+|.|. ++. ...|.|.|||++.++.+++||++.++|.++.. ..
T Consensus 34 ~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~ 108 (132)
T cd04014 34 LLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTE-VHN----GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSG 108 (132)
T ss_pred CcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEE-cCC----CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCC
Confidence 569999999 33 34799999999999999999999 862 46899999999999999999999999998875 45
Q ss_pred ccceeEeCccC
Q psy12096 153 TIEEWRELQSV 163 (173)
Q Consensus 153 ~~~~W~~L~p~ 163 (173)
..+.|++|++.
T Consensus 109 ~~~~w~~L~~~ 119 (132)
T cd04014 109 SFDLWVDLEPQ 119 (132)
T ss_pred cccEEEEccCC
Confidence 56899999853
No 73
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=7.4e-15 Score=106.68 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=74.0
Q ss_pred cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
+..||||+++ .+ ...+|+++++ .||.|||+|.|. ++..++....|.|.+||.+....+.++|.+.|.. +..+..
T Consensus 16 ~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~--~~~~~~ 91 (117)
T cd08383 16 GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSK--LDLGQG 91 (117)
T ss_pred CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCCeeEEEEEEecC--cCCCCc
Confidence 5679999998 33 3579999989 999999999999 8876666568899999988777777777766554 444556
Q ss_pred cceeEeCccCCccccccCC
Q psy12096 154 IEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 154 ~~~W~~L~p~~~~~~~~~~ 172 (173)
.+.|++|++....+++.|+
T Consensus 92 ~~~w~~L~~~~~~~~~~G~ 110 (117)
T cd08383 92 KDEWFPLTPVDPDSEVQGS 110 (117)
T ss_pred ceeEEECccCCCCCCcCce
Confidence 7899999998877777775
No 74
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.59 E-value=5.8e-15 Score=108.55 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=70.4
Q ss_pred cCCCccEEEe--cC------eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCC----CCCCceeEEEEE
Q psy12096 76 EIANESMKIA--DK------VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDR----FSKHDQIGEVKV 143 (173)
Q Consensus 76 ~~~dPyVkv~--~~------~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~----~~~~d~IG~v~l 143 (173)
+..||||+++ .. .+.||+++++++||+|||+|.|. +..+.. ..|.|.|||+|. ++++++||++.+
T Consensus 19 g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~~--~~l~~~V~d~d~~~~~~~~~d~iG~~~i 95 (120)
T cd04048 19 SKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEEV--QKLRFEVYDVDSKSKDLSDHDFLGEAEC 95 (120)
T ss_pred CCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEee--eEEEEEEEEecCCcCCCCCCcEEEEEEE
Confidence 4569999998 21 25899999999999999999998 654443 379999999997 889999999999
Q ss_pred eCCccccccccceeEeCcc
Q psy12096 144 ALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 144 ~L~~l~~~~~~~~W~~L~p 162 (173)
++.++........|+.|.+
T Consensus 96 ~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 96 TLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred EHHHHhcCCCcEEEEEccC
Confidence 9999976666778999944
No 75
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=1.2e-14 Score=107.22 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=70.1
Q ss_pred cCCCccEEEe-c---CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 76 EIANESMKIA-D---KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 76 ~~~dPyVkv~-~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
+..||||+++ . ....||+++++++||.|||+|.|. +... ....|.|.|||++.++++++||++.++|......
T Consensus 20 ~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~ 96 (126)
T cd04043 20 GLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPKRFG 96 (126)
T ss_pred CCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHHHcC
Confidence 4579999997 2 346899999999999999999999 8754 2458999999999999999999999999876432
Q ss_pred ---cccceeEeCccC
Q psy12096 152 ---QTIEEWRELQSV 163 (173)
Q Consensus 152 ---~~~~~W~~L~p~ 163 (173)
...+.|++|.+.
T Consensus 97 ~~~~~~~~w~~l~~~ 111 (126)
T cd04043 97 DDGLPREIWLDLDTQ 111 (126)
T ss_pred CCCCCceEEEEcCCC
Confidence 245689999863
No 76
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.58 E-value=1.6e-14 Score=111.91 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=71.4
Q ss_pred eccCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 74 KKEIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 74 k~~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
..+..||||+++ .+ ...||++++++.||.|||+|.|. +... ...|.|.|||+|.++ +++||++.++++++..+
T Consensus 54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g 128 (158)
T cd04015 54 GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIY-CAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSG 128 (158)
T ss_pred CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEE-ccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCC
Confidence 346679999998 33 34699999999999999999998 7532 247999999999886 58999999999999777
Q ss_pred cccceeEeCccC
Q psy12096 152 QTIEEWRELQSV 163 (173)
Q Consensus 152 ~~~~~W~~L~p~ 163 (173)
...+.|++|...
T Consensus 129 ~~~~~w~~L~~~ 140 (158)
T cd04015 129 EPVEGWLPILDS 140 (158)
T ss_pred CCcceEEECcCC
Confidence 777899999764
No 77
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.58 E-value=1.7e-14 Score=106.34 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=73.7
Q ss_pred cCCCccEEEe-cCeEEeecccCC-CCCCeeecEEEecccCcccC-CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPW-VVVSIFIERQILEGVPYADA-MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 152 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kk-tlnP~wnEtf~F~gV~~~~l-~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~ 152 (173)
...||||++. ....++|++.++ +.||.|||+|.|. ++.... ....|.|.|||.+.++++++||++.++|.++...+
T Consensus 20 ~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 20 GKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred CCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCC
Confidence 3569999998 555678888874 8999999999999 876532 23589999999999999999999999999997677
Q ss_pred ccceeEeCccC
Q psy12096 153 TIEEWRELQSV 163 (173)
Q Consensus 153 ~~~~W~~L~p~ 163 (173)
....|+.|.|.
T Consensus 99 ~~~~~~~l~p~ 109 (124)
T cd04049 99 VEPGTAELVPA 109 (124)
T ss_pred CCcCceEeecc
Confidence 77899999885
No 78
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=9.4e-15 Score=106.34 Aligned_cols=84 Identities=10% Similarity=0.080 Sum_probs=69.6
Q ss_pred ccCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc-cc
Q psy12096 75 KEIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID-LA 151 (173)
Q Consensus 75 ~~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~-~~ 151 (173)
.+..||||++. .. ...+|++++++.||.|||+|.|. +... ....|.|.|||++.+ ++++||++.++|+++. ..
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFL-VTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEE-ecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 35679999998 33 46799999999999999999999 7642 345899999999999 8999999999999883 23
Q ss_pred cccceeEeCcc
Q psy12096 152 QTIEEWRELQS 162 (173)
Q Consensus 152 ~~~~~W~~L~p 162 (173)
...+.|+.|+.
T Consensus 86 ~~~~~w~~L~~ 96 (111)
T cd04052 86 SVGQQWFPLSG 96 (111)
T ss_pred hccceeEECCC
Confidence 34579999985
No 79
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.55 E-value=4.1e-14 Score=106.32 Aligned_cols=88 Identities=16% Similarity=0.261 Sum_probs=67.1
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc----ccCC--CCEEEEEEEEcCCCCCCceeEEEEE-eCCc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY----ADAM--NKTLVFAIFDFDRFSKHDQIGEVKV-ALCQ 147 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~----~~l~--~~~L~~~V~D~d~~~~~d~IG~v~l-~L~~ 147 (173)
+..||||++. ...+.||+++++|+||.|||+|.|..+.. +++. ...|.|.|||+|..+++++||++.+ ++..
T Consensus 20 g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~ 99 (135)
T cd04017 20 GLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVK 99 (135)
T ss_pred CCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeee
Confidence 4579999998 66688999999999999999999972221 1111 2479999999999999999999986 4444
Q ss_pred ccc---ccccceeEeCccC
Q psy12096 148 IDL---AQTIEEWRELQSV 163 (173)
Q Consensus 148 l~~---~~~~~~W~~L~p~ 163 (173)
+.. ......|++|...
T Consensus 100 ~~~~~~~~~~~~W~~L~~~ 118 (135)
T cd04017 100 LDLEEDFPPKLQWFPIYKG 118 (135)
T ss_pred cccCCCCCCCceEEEeecC
Confidence 432 3455799999643
No 80
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=2.9e-14 Score=103.49 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=73.8
Q ss_pred cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
+..||||++. .....+|+++.++.||.|||+|.|. ++.. ....+.|.|||++.++++++||++.+++.++..+..
T Consensus 18 ~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~ 94 (115)
T cd04040 18 GKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEET 94 (115)
T ss_pred CCCCCeEEEEECCCcceeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCc
Confidence 3569999998 3345799999999999999999999 7643 346899999999999999999999999999876666
Q ss_pred cceeEeCccCCc
Q psy12096 154 IEEWRELQSVEG 165 (173)
Q Consensus 154 ~~~W~~L~p~~~ 165 (173)
.+.|++|.+..+
T Consensus 95 ~~~~~~L~~~g~ 106 (115)
T cd04040 95 TELTLPLDGQGG 106 (115)
T ss_pred EEEEEECcCCCC
Confidence 789999987643
No 81
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.53 E-value=4.8e-14 Score=103.98 Aligned_cols=88 Identities=13% Similarity=-0.047 Sum_probs=71.9
Q ss_pred cCCCccEEEe-cC-eEEeecccC-CCCCCeeecEEEecccCcccC--CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 76 EIANESMKIA-DK-VAEETGMPP-WVVVSIFIERQILEGVPYADA--MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 76 ~~~dPyVkv~-~~-~k~kTkv~k-ktlnP~wnEtf~F~gV~~~~l--~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
...||||.++ .. .+++|++++ ++.||.|||+|.|. ++...+ ....|.|.|||++.++.+++||++.++|.++..
T Consensus 19 ~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~ 97 (125)
T cd04051 19 GKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD 97 (125)
T ss_pred cCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhc
Confidence 4579999998 44 678999975 58999999999999 876532 245899999999999999999999999999865
Q ss_pred cccc-----ceeEeCccCC
Q psy12096 151 AQTI-----EEWRELQSVE 164 (173)
Q Consensus 151 ~~~~-----~~W~~L~p~~ 164 (173)
.... ..||.|....
T Consensus 98 ~~~~~~~~~~~~~~l~~~~ 116 (125)
T cd04051 98 GASPAGELRFLSYQLRRPS 116 (125)
T ss_pred ccCCCCcceeEEEEeECCC
Confidence 5442 5899997543
No 82
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.53 E-value=5e-14 Score=106.94 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=74.7
Q ss_pred cCCCccEEEe----c----------CeEEeecccCCCCCCee-ecEEEecccCcccCCCCEEEEEEEEcCCCCC---Cce
Q psy12096 76 EIANESMKIA----D----------KVAEETGMPPWVVVSIF-IERQILEGVPYADAMNKTLVFAIFDFDRFSK---HDQ 137 (173)
Q Consensus 76 ~~~dPyVkv~----~----------~~k~kTkv~kktlnP~w-nEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~---~d~ 137 (173)
+..||||+++ . ..++||+++++++||+| ||+|.|. +.. +..|.|.|||++..++ +++
T Consensus 19 g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L~v~V~D~~~~~~~~~~d~ 93 (137)
T cd08691 19 FNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLP----TDVLEIEVKDKFAKSRPIIRRF 93 (137)
T ss_pred CCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCC----CCEEEEEEEecCCCCCccCCce
Confidence 4579999998 1 23799999999999999 9999999 753 3479999999876544 699
Q ss_pred eEEEEEeCCcccccc---ccceeEeCccCCccccccCC
Q psy12096 138 IGEVKVALCQIDLAQ---TIEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 138 IG~v~l~L~~l~~~~---~~~~W~~L~p~~~~~~~~~~ 172 (173)
||++.+++.++.... ....||.|..+..-+.|+|.
T Consensus 94 lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~ 131 (137)
T cd08691 94 LGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQ 131 (137)
T ss_pred EEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEE
Confidence 999999999985332 24579999988888888874
No 83
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.51 E-value=8.8e-14 Score=105.14 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=63.2
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
+..||||+++ ...+.||+++++++||.|||+|.|. +.. .....|.|.|||+|.++++++||++.++|.++..
T Consensus 34 g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 34 GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCcCcEEEEEECCEeeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 4579999998 6668999999999999999999999 754 3345899999999999999999999999988854
No 84
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.51 E-value=1.8e-13 Score=101.71 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=71.4
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI 154 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~ 154 (173)
+..|||+++. ...+.+|++++++.||.|||+|.|. +... ...|.|.|||++.++ +++||++.++++.+. ...
T Consensus 22 g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~--~~~ 94 (126)
T cd04046 22 GGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSNLLC-DEFLGQATLSADPND--SQT 94 (126)
T ss_pred CCcCccEEEEECCEEEEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECCCCC-CCceEEEEEecccCC--CcC
Confidence 3579999998 5668999999999999999999998 6532 458999999999875 799999999998753 344
Q ss_pred ceeEeCccC--CccccccC
Q psy12096 155 EEWRELQSV--EGEGGQIG 171 (173)
Q Consensus 155 ~~W~~L~p~--~~~~~~~~ 171 (173)
..|+.|+.. ...+++.|
T Consensus 95 ~~~~~l~~~~~~~~~~~~G 113 (126)
T cd04046 95 LRTLPLRKRGRDAAGEVPG 113 (126)
T ss_pred ceEEEcccCCCCCCCCCCC
Confidence 688899643 35556655
No 85
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.50 E-value=1.4e-13 Score=102.27 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=71.3
Q ss_pred cCCCccEEEe-cCe-EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA-DKV-AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~-~~~-k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
...||||+++ ... +.+|+++++++||.|||+|.|. +.. ...|.|.|||++..+.+++||++.++|.++...+.
T Consensus 20 ~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~ 94 (125)
T cd04021 20 FKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHN 94 (125)
T ss_pred CCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcC
Confidence 3479999998 333 7899999999999999999999 753 35899999999999999999999999988753322
Q ss_pred -----cceeEeCccCCc-cccccC
Q psy12096 154 -----IEEWRELQSVEG-EGGQIG 171 (173)
Q Consensus 154 -----~~~W~~L~p~~~-~~~~~~ 171 (173)
...|++|..... -+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~G 118 (125)
T cd04021 95 GKLENVKLTLNLSSENKGSSVKVG 118 (125)
T ss_pred CCccceEEEEEEEccCCCcceeee
Confidence 235888874442 335555
No 86
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=1.2e-13 Score=102.42 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=57.4
Q ss_pred cCCCccEEEe---c---CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEc-------CCCCCCceeEEEE
Q psy12096 76 EIANESMKIA---D---KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDF-------DRFSKHDQIGEVK 142 (173)
Q Consensus 76 ~~~dPyVkv~---~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~-------d~~~~~d~IG~v~ 142 (173)
+..||||+++ . ..+.||+++++|+||+|||+|.|. ++. ...|.+.|||+ |..+.|+++|.+.
T Consensus 13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~ 87 (118)
T cd08686 13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQ 87 (118)
T ss_pred CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEcccccccccccCcccEEEEEE
Confidence 4579999997 1 357999999999999999999999 862 45999999998 5778899999988
Q ss_pred EeCCcc
Q psy12096 143 VALCQI 148 (173)
Q Consensus 143 l~L~~l 148 (173)
+.|+.-
T Consensus 88 i~Ld~~ 93 (118)
T cd08686 88 IQLDPQ 93 (118)
T ss_pred EEECHH
Confidence 887643
No 87
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.50 E-value=8e-14 Score=104.60 Aligned_cols=72 Identities=13% Similarity=-0.042 Sum_probs=60.6
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 149 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~ 149 (173)
...||||+++ ...+.||++++++.||+|||+|.|. ..... ....|.|.|||+|.++++++||++.++|....
T Consensus 46 g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~-~~~~~-~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 46 TSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFG-SVELS-PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCeEEEEEECCccccCceecCCCCCcCCCEEEEe-cccCC-CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 3569999999 5558999999999999999999997 32211 34589999999999999999999999998654
No 88
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=8e-14 Score=103.07 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=72.5
Q ss_pred cCCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
...||||+++ . ..+.+|++++++.||.|||+|.|. +... ...|.|.|||++.++++++||++.++|.++... .
T Consensus 20 g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~ 94 (120)
T cd04045 20 GKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-N 94 (120)
T ss_pred CCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-C
Confidence 4579999998 3 346899999999999999999998 7543 358999999999999999999999999988644 6
Q ss_pred cceeEeCccCCccc
Q psy12096 154 IEEWRELQSVEGEG 167 (173)
Q Consensus 154 ~~~W~~L~p~~~~~ 167 (173)
.+.||.|.......
T Consensus 95 ~~~~~~~~~~~~~~ 108 (120)
T cd04045 95 EDGKYVEYDDEEER 108 (120)
T ss_pred CCceEEecCCCcce
Confidence 68899987765443
No 89
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.47 E-value=2.7e-13 Score=104.76 Aligned_cols=63 Identities=25% Similarity=0.418 Sum_probs=55.2
Q ss_pred EeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096 90 EETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160 (173)
Q Consensus 90 ~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L 160 (173)
.+|+++++++||.|||+|.|. +.. +....|.|.|||++ +++||++.++++++. ..+.++||+|
T Consensus 91 ~kT~v~~~tlnP~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 91 KVTEVKPQTLNPVWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred EecceecCCCCCccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 789999999999999999999 753 34568999999998 889999999999987 4567999987
No 90
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.46 E-value=2.8e-13 Score=99.18 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=67.5
Q ss_pred CCCccEEEe-cC--eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 77 IANESMKIA-DK--VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 77 ~~dPyVkv~-~~--~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
..||||++. .. .+.+|++++++.||.|||+|.|. +.. ....|.|.|||++.++++++||++.++|.++...+.
T Consensus 23 ~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 98 (124)
T cd04044 23 TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE 98 (124)
T ss_pred CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCcc
Confidence 469999998 33 68999999999999999999999 862 245899999999999999999999999999875555
Q ss_pred cc-eeEeCc
Q psy12096 154 IE-EWRELQ 161 (173)
Q Consensus 154 ~~-~W~~L~ 161 (173)
.. .|+.|.
T Consensus 99 ~~~~~~~~~ 107 (124)
T cd04044 99 QENLTKNLL 107 (124)
T ss_pred ccCcchhhh
Confidence 54 355554
No 91
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.45 E-value=2.6e-13 Score=103.90 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=62.8
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
...||||++. ...+.||+++++++||.|||+|.|. ++.. ...|.|.|||+|.++++++||++.+++..+..
T Consensus 20 ~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhh
Confidence 4579999998 6678999999999999999999999 8653 45899999999999999999999999888743
No 92
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.45 E-value=9.9e-13 Score=100.95 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCCccEEEe-cCeE-EeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCC-CC---CCceeEEEEEeCCcccc
Q psy12096 77 IANESMKIA-DKVA-EETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDR-FS---KHDQIGEVKVALCQIDL 150 (173)
Q Consensus 77 ~~dPyVkv~-~~~k-~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~-~~---~~d~IG~v~l~L~~l~~ 150 (173)
..+||+.++ .+.+ .||+++.++.||.|+|.|.|. .... . ..+.|.||+.+. .+ .+++||.+.||+..+..
T Consensus 26 ~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~-~~~~-~--~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~ 101 (146)
T cd04013 26 KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFS-NLPP-V--SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS 101 (146)
T ss_pred cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEec-CCCc-c--cEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC
Confidence 458999999 4444 699999999999999999998 4321 2 479999986543 32 57899999999999987
Q ss_pred ccccceeEeCccCCccccccCC
Q psy12096 151 AQTIEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 151 ~~~~~~W~~L~p~~~~~~~~~~ 172 (173)
+...+.||+|++..+.+++||+
T Consensus 102 ~~~ve~Wfpl~~~~~~~~~~~~ 123 (146)
T cd04013 102 RQFVEKWYPVSTPKGNGKSGGK 123 (146)
T ss_pred CCcccEEEEeecCCCCCccccc
Confidence 7788999999998888766654
No 93
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=3.6e-13 Score=99.95 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=60.0
Q ss_pred cCCCccEEEe-cC--eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 76 EIANESMKIA-DK--VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 76 ~~~dPyVkv~-~~--~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
+..||||++. .. .+.||+++++++||.|||+|.|. +... ....|.|+|||+|.++++++||++.++|.+...
T Consensus 19 g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 19 GKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 4579999998 22 24678889999999999999998 6543 245899999999999999999999999987653
No 94
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.43 E-value=2.8e-13 Score=102.47 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=65.9
Q ss_pred CCCccEEEe----cCeEEeecccCCCCC--CeeecEEEecccCc---------------------ccCCCCEEEEEEEEc
Q psy12096 77 IANESMKIA----DKVAEETGMPPWVVV--SIFIERQILEGVPY---------------------ADAMNKTLVFAIFDF 129 (173)
Q Consensus 77 ~~dPyVkv~----~~~k~kTkv~kktln--P~wnEtf~F~gV~~---------------------~~l~~~~L~~~V~D~ 129 (173)
.+|||||+. ...+++|.++++++| |.||+.|.|+ ++. +.+....|.++|||+
T Consensus 24 ~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~ 102 (133)
T cd08374 24 MSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDN 102 (133)
T ss_pred ccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEEC
Confidence 379999998 356899999999999 9999999999 877 566678999999999
Q ss_pred CCCCCCceeEEEEEeCCccccc
Q psy12096 130 DRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 130 d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
|.+++||+||++.++|..+...
T Consensus 103 D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 103 DKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCCCCcceEEEEEhhhcccc
Confidence 9999999999999999987543
No 95
>PLN03008 Phospholipase D delta
Probab=99.41 E-value=7.8e-13 Score=123.62 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=73.6
Q ss_pred ccCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc
Q psy12096 75 KEIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 152 (173)
Q Consensus 75 ~~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~ 152 (173)
...+||||++. .+++.||+++++++||+|||+|.|. +... ...|.|+|||+|.++. ++||++.|||+++..++
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASGE 148 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCC-ceeEEEEEEHHHcCCCC
Confidence 35679999999 4556799999999999999999999 8752 3489999999999984 89999999999998888
Q ss_pred ccceeEeCccCC
Q psy12096 153 TIEEWRELQSVE 164 (173)
Q Consensus 153 ~~~~W~~L~p~~ 164 (173)
..+.|++|....
T Consensus 149 ~vd~Wl~Ll~~~ 160 (868)
T PLN03008 149 RISGWFPVLGAS 160 (868)
T ss_pred ceEEEEEccccC
Confidence 889999996653
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.34 E-value=2.3e-12 Score=92.98 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=57.9
Q ss_pred cCCCccEEEe--cC-----eEEeecccCCCCCCeeecEEEecccCcccCC----CCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096 76 EIANESMKIA--DK-----VAEETGMPPWVVVSIFIERQILEGVPYADAM----NKTLVFAIFDFDRFSKHDQIGEVKVA 144 (173)
Q Consensus 76 ~~~dPyVkv~--~~-----~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~----~~~L~~~V~D~d~~~~~d~IG~v~l~ 144 (173)
+..|||++++ .. .+++|+++++++||.|| +|.|. +. .+. ...|.|.|||++.++++++||++.++
T Consensus 19 ~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~-~~--~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~ 94 (110)
T cd04047 19 GKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP-LQ--KLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETT 94 (110)
T ss_pred CCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE-HH--HhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEE
Confidence 3579999998 11 25899999999999999 67766 32 222 45899999999999999999999999
Q ss_pred CCccc
Q psy12096 145 LCQID 149 (173)
Q Consensus 145 L~~l~ 149 (173)
+..+.
T Consensus 95 l~~l~ 99 (110)
T cd04047 95 LDELL 99 (110)
T ss_pred HHHHh
Confidence 99886
No 97
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.32 E-value=8.6e-12 Score=91.70 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=67.0
Q ss_pred cCCCccEEEe----c---CeEEeecccCCCC-CCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096 76 EIANESMKIA----D---KVAEETGMPPWVV-VSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ 147 (173)
Q Consensus 76 ~~~dPyVkv~----~---~~k~kTkv~kktl-nP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~ 147 (173)
...||||+++ . ..+.||++++++. ||.|||+|.|. +...+. ..|.|.|||++.. ++++||++.++|.+
T Consensus 23 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~~--~~l~~~V~d~~~~-~~~~iG~~~~~l~~ 98 (128)
T cd00275 23 SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPEL--AFLRFVVYDEDSG-DDDFLGQACLPLDS 98 (128)
T ss_pred CccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCCe--EEEEEEEEeCCCC-CCcEeEEEEEEhHH
Confidence 4569999987 1 3468999988775 99999999999 764432 3799999999988 89999999999998
Q ss_pred cccccccceeEeCccCCcc
Q psy12096 148 IDLAQTIEEWRELQSVEGE 166 (173)
Q Consensus 148 l~~~~~~~~W~~L~p~~~~ 166 (173)
+..+ ..|+.|....+.
T Consensus 99 l~~g---~~~~~l~~~~~~ 114 (128)
T cd00275 99 LRQG---YRHVPLLDSKGE 114 (128)
T ss_pred hcCc---eEEEEecCCCCC
Confidence 8532 468888765554
No 98
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.24 E-value=1.2e-11 Score=124.26 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=71.1
Q ss_pred CCCccEEEe-c-CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096 77 IANESMKIA-D-KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI 154 (173)
Q Consensus 77 ~~dPyVkv~-~-~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~ 154 (173)
..||||.+. . +.++||+++++++||.|||.|.|. +..+.. +..|.|.|||+|.|+++ .+|.+.++|.++-.++..
T Consensus 1998 ~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~-~~~p~~-~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv~~~~~ 2074 (2102)
T PLN03200 1998 NTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWA-FDSPPK-GQKLHISCKSKNTFGKS-SLGKVTIQIDRVVMEGTY 2074 (2102)
T ss_pred CCCCeEEEEECCCCcccccccCCCCCCCcccceeee-ecCCCC-CCceEEEEEecCccCCC-CCceEEEEHHHHhcCcee
Confidence 459999998 4 448899999999999999999977 544332 34699999999999655 999999999999878888
Q ss_pred ceeEeCccC
Q psy12096 155 EEWRELQSV 163 (173)
Q Consensus 155 ~~W~~L~p~ 163 (173)
+.||.|.+.
T Consensus 2075 ~~~~~L~~~ 2083 (2102)
T PLN03200 2075 SGEYSLNPE 2083 (2102)
T ss_pred eeeeecCcc
Confidence 999999864
No 99
>PLN02223 phosphoinositide phospholipase C
Probab=99.20 E-value=5.2e-11 Score=107.34 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=68.3
Q ss_pred CCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 77 IANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 77 ~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
..||||++. +..+++|.+..++.||+|||+|.|. |...+++ .|+|.|+|+|..+.++|+|+..+|+.++..
T Consensus 434 ~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PELA--lLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~ 510 (537)
T PLN02223 434 KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDLA--LISFEVYDYEVSTADAFCGQTCLPVSELIE 510 (537)
T ss_pred CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCce--EEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence 468999998 4456788888889999999999999 9887776 799999999999999999999999999875
Q ss_pred ccccceeEeCccCC
Q psy12096 151 AQTIEEWRELQSVE 164 (173)
Q Consensus 151 ~~~~~~W~~L~p~~ 164 (173)
+ -.+.+|....
T Consensus 511 G---yR~VpL~~~~ 521 (537)
T PLN02223 511 G---IRAVPLYDER 521 (537)
T ss_pred C---ceeEeccCCC
Confidence 5 3455665443
No 100
>PLN02952 phosphoinositide phospholipase C
Probab=99.18 E-value=7e-11 Score=108.05 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=70.4
Q ss_pred CCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 78 ANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 78 ~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
.||||++. +..+++|+++.++.||+|||+|.|. +..++++ .|+|.|||+|..+.++++|+..+|+.++..+
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PELA--llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G 573 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPELA--LLRIEVREYDMSEKDDFGGQTCLPVSELRPG 573 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCcc--EEEEEEEecCCCCCCCeEEEEEcchhHhcCC
Confidence 48999987 4567899999999999999999999 8877765 7999999999999999999999999999755
Q ss_pred cccceeEeCccCCc
Q psy12096 152 QTIEEWRELQSVEG 165 (173)
Q Consensus 152 ~~~~~W~~L~p~~~ 165 (173)
. .|++|....+
T Consensus 574 y---R~VpL~~~~G 584 (599)
T PLN02952 574 I---RSVPLHDKKG 584 (599)
T ss_pred c---eeEeCcCCCC
Confidence 3 4888865443
No 101
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.16 E-value=1.8e-10 Score=77.68 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=55.5
Q ss_pred cCCCccEEEe--c--CeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEE
Q psy12096 76 EIANESMKIA--D--KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 142 (173)
Q Consensus 76 ~~~dPyVkv~--~--~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~ 142 (173)
+..+||+++. . ..+++|++++++.+|.|||+|.|. +...+.. .|.|.|||++.++++++||++.
T Consensus 18 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 18 GKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPDLD--SLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred Ccccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence 3568999998 2 257999999999999999999999 8877665 4999999999999999999973
No 102
>KOG2059|consensus
Probab=99.15 E-value=5.4e-11 Score=108.79 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=82.7
Q ss_pred cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
+.+|||.-+. .....+|.++-+++.|.|.|.|.|. ||.. -+.|.|.|||.| +++|+.||.+.|.-.++....+
T Consensus 24 g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~---F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~ 98 (800)
T KOG2059|consen 24 GMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFE-IPRT---FRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPG 98 (800)
T ss_pred CCcCcceEEeecchhhhhhhhhhhhcCCccccceEEe-cCcc---eeeEEEEEeccc-cccccccceeeeeHHHHhhCCC
Confidence 4579998887 5557899999999999999999999 8752 358999999999 9999999999999888887778
Q ss_pred cceeEeCccCCccccccCC
Q psy12096 154 IEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 154 ~~~W~~L~p~~~~~~~~~~ 172 (173)
.+.|+.|++...+++||||
T Consensus 99 ~d~W~~L~~VD~dsEVQG~ 117 (800)
T KOG2059|consen 99 KDTWFSLQPVDPDSEVQGK 117 (800)
T ss_pred CccceeccccCCChhhcee
Confidence 8999999999999999997
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.11 E-value=5e-10 Score=76.11 Aligned_cols=82 Identities=24% Similarity=0.311 Sum_probs=68.7
Q ss_pred cCCCccEEEe-cC-eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc-ccc
Q psy12096 76 EIANESMKIA-DK-VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID-LAQ 152 (173)
Q Consensus 76 ~~~dPyVkv~-~~-~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~-~~~ 152 (173)
...+|||.+. .. ...+|.+..++.||.|||.|.|. +... ....|.|.||+.+..+.+.+||.+.+++..+. ...
T Consensus 18 ~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~ 94 (102)
T cd00030 18 GKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGK 94 (102)
T ss_pred CCCCcEEEEEeccCceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCC
Confidence 3578999998 43 67899999999999999999999 7642 34589999999999888899999999999886 555
Q ss_pred ccceeEeC
Q psy12096 153 TIEEWREL 160 (173)
Q Consensus 153 ~~~~W~~L 160 (173)
....|++|
T Consensus 95 ~~~~~~~l 102 (102)
T cd00030 95 EGELWLPL 102 (102)
T ss_pred cCcceecC
Confidence 66789875
No 104
>KOG1013|consensus
Probab=99.09 E-value=1.2e-10 Score=98.84 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=103.1
Q ss_pred CChhhhheeeeeeee-eecCCCCchhhhhhhhccCCcccCCCCCC-CcccceecchheecccccceeeEEee-------e
Q psy12096 4 FDKREVVQEVLNVIS-FNASTLPPLVADSIKRKTQATTTTTPLPE-DEEEDLEMTEAFEDVSEELSSTVASI-------K 74 (173)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~lv~~i-------k 74 (173)
|.+-|-+||.=++|. +++.-++- ..--+++... .-....++ ++++.+.+.+.|......+.+.++.. .
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~k~-f~~cl~~~lp--~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDs 250 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQRKS-FNICLEKSLP--SERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDS 250 (362)
T ss_pred cccccCcccchhhhhccChhhcch-hhhhhhccCC--cccccccchhhccceeeeeccCcCCCceEEEEEEeeeeecccc
Confidence 455566777666663 55555532 1111222221 11123334 56788999999999999998887653 3
Q ss_pred ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCC
Q psy12096 75 KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC 146 (173)
Q Consensus 75 ~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~ 146 (173)
++.+||||+.. .+.|+||.+.++++||.||+.|.|. +...+|....+.|+|||++..+.++++|...+.+.
T Consensus 251 ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 251 NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 45679999987 4558999999999999999999999 99999999999999999999989999998776643
No 105
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.08 E-value=5.8e-10 Score=76.46 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=61.7
Q ss_pred cCCCccEEEe--cC--eEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 76 EIANESMKIA--DK--VAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 76 ~~~dPyVkv~--~~--~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
...+|||++. .. ...+|++..++.||.|||+|.|. +.... ...|.|.|||.+..+.+.++|.+.+++.++...
T Consensus 19 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 19 GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence 3579999998 22 47999999999999999999999 76543 568999999999888889999999999887544
No 106
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.06 E-value=3.7e-10 Score=103.30 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=68.0
Q ss_pred CCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 77 IANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 77 ~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
..||||++. +..+++|++..++.||+|||+|.|. +..++++ .|+|.|+|+|....++|+|+..||+..+..
T Consensus 495 ~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPELA--llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~ 571 (598)
T PLN02230 495 PPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPELA--LLRVEVHEHDINEKDDFGGQTCLPVSEIRQ 571 (598)
T ss_pred CCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCCEEEEEEcchHHhhC
Confidence 369999997 4456799999999999999999999 8887776 899999999999999999999999999865
Q ss_pred ccccceeEeCccCC
Q psy12096 151 AQTIEEWRELQSVE 164 (173)
Q Consensus 151 ~~~~~~W~~L~p~~ 164 (173)
+- ....|....
T Consensus 572 Gy---R~V~L~~~~ 582 (598)
T PLN02230 572 GI---HAVPLFNRK 582 (598)
T ss_pred cc---ceEeccCCC
Confidence 42 244554443
No 107
>KOG1011|consensus
Probab=99.04 E-value=1.4e-10 Score=105.78 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=75.4
Q ss_pred eccCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC-----------CCCceeEEE
Q psy12096 74 KKEIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF-----------SKHDQIGEV 141 (173)
Q Consensus 74 k~~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~-----------~~~d~IG~v 141 (173)
+.+.+||||... .+.|++|+++...+||+|||.|+|. ..+. ...+.++|||.|.- -.+||+|+.
T Consensus 312 ktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfe-chns---tdrikvrvwded~dlksklrqkl~resddflgqt 387 (1283)
T KOG1011|consen 312 KTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFE-CHNS---TDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQT 387 (1283)
T ss_pred cCCCCCCcEEEeecccchhhHhhhhccchhhhhheeee-ecCC---CceeEEEEecCcccHHHHHHHHhhhcccccccce
Confidence 457789999988 7789999999999999999999999 6542 34799999998853 357999999
Q ss_pred EEeCCccccccccceeEeCccCCccccccC
Q psy12096 142 KVALCQIDLAQTIEEWRELQSVEGEGGQIG 171 (173)
Q Consensus 142 ~l~L~~l~~~~~~~~W~~L~p~~~~~~~~~ 171 (173)
.|.+..+ .++.+.||.|+-+.-.+-|-|
T Consensus 388 vievrtl--sgemdvwynlekrtdksavsg 415 (1283)
T KOG1011|consen 388 VIEVRTL--SGEMDVWYNLEKRTDKSAVSG 415 (1283)
T ss_pred eEEEEec--ccchhhhcchhhccchhhccc
Confidence 9998776 456899999988766666555
No 108
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.02 E-value=4.9e-10 Score=102.28 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=63.8
Q ss_pred CCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 77 IANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 77 ~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
..||||++. +..+++|+++.++.||+|||+|.|. +..++++ .|+|.|||+|..+.++|||+..+|+..+..
T Consensus 478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeLA--llRf~V~d~D~~~~ddfigq~~lPv~~Lr~ 554 (581)
T PLN02222 478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPELA--LLRLEVHEYDMSEKDDFGGQTCLPVWELSQ 554 (581)
T ss_pred CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCcEEEEEEcchhhhhC
Confidence 468999987 4567899999999999999999999 8877775 899999999998999999999999999865
Q ss_pred c
Q psy12096 151 A 151 (173)
Q Consensus 151 ~ 151 (173)
+
T Consensus 555 G 555 (581)
T PLN02222 555 G 555 (581)
T ss_pred c
Confidence 4
No 109
>KOG2059|consensus
Probab=98.97 E-value=7.2e-10 Score=101.56 Aligned_cols=147 Identities=15% Similarity=0.205 Sum_probs=100.5
Q ss_pred CChhhhheeeeeeeeeecCCCCchhhhhhhhccCCcccC--CCCCCCcc--cceecchheec--ccccceeeEE------
Q psy12096 4 FDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTT--TPLPEDEE--EDLEMTEAFED--VSEELSSTVA------ 71 (173)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~l~~~~~~~~--~~~~l~~lv~------ 71 (173)
+.||++||-|- +.+|.|..-...-|-+ .|+-.|.+ |++++.+.+.. +...+.|.+.
T Consensus 77 ~~~D~~IGKva------------i~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~ 144 (800)
T KOG2059|consen 77 LKRDDIIGKVA------------IKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGL 144 (800)
T ss_pred cccccccceee------------eeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccC
Confidence 56777776442 6777777666666655 34444433 56666666653 2222222221
Q ss_pred eeeccCCCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCcccC-------------CCCEEEEEEEE-cCCC
Q psy12096 72 SIKKEIANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPYADA-------------MNKTLVFAIFD-FDRF 132 (173)
Q Consensus 72 ~ik~~~~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l-------------~~~~L~~~V~D-~d~~ 132 (173)
-+.++..|||+.+. .....+|++.++|.+|.|||.|.|. +..+.- .-..|.+.+|+ ++..
T Consensus 145 P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~ 223 (800)
T KOG2059|consen 145 PIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLV 223 (800)
T ss_pred ceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-eccccccccchhcCcccCCceeeEEEeeccchhhh
Confidence 12345589999887 2123799999999999999999999 765410 12358889998 6677
Q ss_pred CCCceeEEEEEeCCccccccccceeEeCccC
Q psy12096 133 SKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163 (173)
Q Consensus 133 ~~~d~IG~v~l~L~~l~~~~~~~~W~~L~p~ 163 (173)
..++|+|++.+++...........||.|+|.
T Consensus 224 ~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~ 254 (800)
T KOG2059|consen 224 INDVFLGEVRVPVDVLRQKSSPAAWYYLQPR 254 (800)
T ss_pred hhhhhceeEEeehhhhhhccCccceEEEecC
Confidence 7799999999999888755566899999997
No 110
>KOG1328|consensus
Probab=98.93 E-value=4.2e-10 Score=103.54 Aligned_cols=79 Identities=18% Similarity=0.346 Sum_probs=68.0
Q ss_pred EeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC---------------------------------CC--
Q psy12096 90 EETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF---------------------------------SK-- 134 (173)
Q Consensus 90 ~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~---------------------------------~~-- 134 (173)
+-|.+.++|+||.|+|.|.|. | +++....+.+-|||+|.- +.
T Consensus 179 katsvk~~TLnPkW~EkF~F~-I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~ 255 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFT-I--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDC 255 (1103)
T ss_pred hhcccccccCCcchhhheeee-h--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcc
Confidence 347788999999999999999 7 467677899999998841 22
Q ss_pred -CceeEEEEEeCCccccccccceeEeCccCCccccccCC
Q psy12096 135 -HDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK 172 (173)
Q Consensus 135 -~d~IG~v~l~L~~l~~~~~~~~W~~L~p~~~~~~~~~~ 172 (173)
|||+|.+.+||..+.. .+.+.||.|+|++..++|||.
T Consensus 256 tDDFLGciNipl~EiP~-~Gld~WFkLepRS~~S~VqG~ 293 (1103)
T KOG1328|consen 256 TDDFLGCINIPLAEIPP-DGLDQWFKLEPRSDKSKVQGQ 293 (1103)
T ss_pred ccccccccccchhcCCc-chHHHHhccCcccccccccce
Confidence 7899999999999964 478999999999999999994
No 111
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.89 E-value=2.3e-09 Score=102.60 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=65.5
Q ss_pred cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc
Q psy12096 76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 153 (173)
Q Consensus 76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~ 153 (173)
+..||||++. .+.-+||+++++|+||+|||++..+ |..... ..+.+.|+|||...+++.||.+.++|..+..+..
T Consensus 1059 g~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~-v~~r~~--D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1059 GYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE-VLNRVK--DVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred CCCCceEEEEecceecccccchhccCCCCccccceEe-eecccc--ceEEEEEeecccCCCccccccccccHhhcCcCCc
Confidence 4479999998 4557999999999999999999988 875443 4799999999999999999999999999876544
Q ss_pred cc
Q psy12096 154 IE 155 (173)
Q Consensus 154 ~~ 155 (173)
.+
T Consensus 1136 ~n 1137 (1227)
T COG5038 1136 TN 1137 (1227)
T ss_pred cc
Confidence 33
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=98.89 E-value=5.3e-09 Score=95.34 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=63.4
Q ss_pred CCCccEEEe------cCeEEeecccCCCCCCee-ecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096 77 IANESMKIA------DKVAEETGMPPWVVVSIF-IERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 149 (173)
Q Consensus 77 ~~dPyVkv~------~~~k~kTkv~kktlnP~w-nEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~ 149 (173)
..||||++. +..+.+|++++++.||+| ||+|.|. +...++. .|+|.|+|+|..+.+++||+..+|+..+.
T Consensus 457 ~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pELA--~lRf~V~D~d~~~~d~figq~~lPv~~Lr 533 (567)
T PLN02228 457 PPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPELA--LLWFKVQDYDNDTQNDFAGQTCLPLPELK 533 (567)
T ss_pred CCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCcee--EEEEEEEeCCCCCCCCEEEEEEcchhHhh
Confidence 368999987 445789999999999999 9999999 8877776 89999999999999999999999999986
Q ss_pred cc
Q psy12096 150 LA 151 (173)
Q Consensus 150 ~~ 151 (173)
.+
T Consensus 534 ~G 535 (567)
T PLN02228 534 SG 535 (567)
T ss_pred CC
Confidence 44
No 113
>KOG0169|consensus
Probab=98.88 E-value=1.6e-09 Score=100.06 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=64.1
Q ss_pred cCCCccEEEe------cCeEEeec-ccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096 76 EIANESMKIA------DKVAEETG-MPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 148 (173)
Q Consensus 76 ~~~dPyVkv~------~~~k~kTk-v~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l 148 (173)
...||||.+. +..+.+|+ +..++.||.|+|+|.|. +..++++ .|+|.|+|+|..++|||+|+..+|+.++
T Consensus 639 ~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L 715 (746)
T KOG0169|consen 639 EISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSEL 715 (746)
T ss_pred ccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEEEEecCCCCcccccceeeccHHHh
Confidence 4568998877 44578999 66688999999999999 9988887 8999999999999999999999999988
Q ss_pred ccc
Q psy12096 149 DLA 151 (173)
Q Consensus 149 ~~~ 151 (173)
..+
T Consensus 716 ~~G 718 (746)
T KOG0169|consen 716 RQG 718 (746)
T ss_pred hCc
Confidence 654
No 114
>KOG1328|consensus
Probab=98.86 E-value=7.6e-10 Score=101.89 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=64.6
Q ss_pred ccCCCccEEEe--------cCeEEeecccCCCCCCeeecEEEecccCcccCC--CCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096 75 KEIANESMKIA--------DKVAEETGMPPWVVVSIFIERQILEGVPYADAM--NKTLVFAIFDFDRFSKHDQIGEVKVA 144 (173)
Q Consensus 75 ~~~~dPyVkv~--------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~--~~~L~~~V~D~d~~~~~d~IG~v~l~ 144 (173)
++.+||||.+. .-...||+|+.+|+||+|+|+|.|. |+.+... ..++.|+|.|+|-++.|||-|++.+.
T Consensus 965 NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~ 1043 (1103)
T KOG1328|consen 965 NGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLE 1043 (1103)
T ss_pred CCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCccccccccceEEEEeeccceecccccchHHHHh
Confidence 35679999988 1235899999999999999999999 9987665 46899999999999999999999999
Q ss_pred CCccc
Q psy12096 145 LCQID 149 (173)
Q Consensus 145 L~~l~ 149 (173)
|+.+.
T Consensus 1044 Lg~vp 1048 (1103)
T KOG1328|consen 1044 LGDVP 1048 (1103)
T ss_pred hCCCC
Confidence 98874
No 115
>KOG1264|consensus
Probab=98.67 E-value=3.6e-08 Score=91.92 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=77.0
Q ss_pred hhhccCCcccCCCCCC-CcccceecchheecccccceeeEEeeeccCCCccEEEe------cCeEEee-cccCCCCCCee
Q psy12096 32 IKRKTQATTTTTPLPE-DEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIA------DKVAEET-GMPPWVVVSIF 103 (173)
Q Consensus 32 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~lv~~ik~~~~dPyVkv~------~~~k~kT-kv~kktlnP~w 103 (173)
++.++-++..|-|.+. ..++-++|++...-.--+- +....++.+.|||.+. +..+++| .|..+.+||+|
T Consensus 1041 LqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRH---L~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiW 1117 (1267)
T KOG1264|consen 1041 LQPSSMRTEKFDPMNPESQRGLLPMTLSVKVLGARH---LPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIW 1117 (1267)
T ss_pred ecchhcccccCCCCChHHhccccceEEEEEEeeccc---cccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCC
Confidence 4555555555555554 3444444554222100000 0011235667999987 4445554 56778999999
Q ss_pred e-cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 104 I-ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 104 n-Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
| |+|+|. |..++++ .|+|.|+|.|+++...|||++..|+..+..+
T Consensus 1118 n~e~ftFe-I~nPe~A--~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1118 NPEKFTFE-IYNPEFA--FLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred CCcceEEE-eeCCceE--EEEEEEecccccCCcceeeeeecchhhhhcc
Confidence 9 999999 9888776 8999999999999999999999999887543
No 116
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.59 E-value=2.5e-08 Score=70.49 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=62.8
Q ss_pred cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccceeEeC
Q psy12096 86 DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160 (173)
Q Consensus 86 ~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~~W~~L 160 (173)
+.-.+||.+.+...||.|+|||.|. |...+++..+|-|+|+. ...+.+.||.+.+.|+++. .++.++|.++
T Consensus 33 kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~ 103 (103)
T cd08684 33 KPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS-TQETDHWLEI 103 (103)
T ss_pred CCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence 4557999999999999999999999 99999999999999997 5678899999999999886 4577899764
No 117
>KOG1013|consensus
Probab=98.55 E-value=1.4e-08 Score=86.39 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=86.9
Q ss_pred cceecchheecccccceeeEEeee-------ccCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccC
Q psy12096 51 EDLEMTEAFEDVSEELSSTVASIK-------KEIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADA 117 (173)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~lv~~ik-------~~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l 117 (173)
+.+.+.+.|+.....+.+++...+ ...+|||+++. +..+++|++..+++||.|||+..+.+|..+++
T Consensus 80 g~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~ 159 (362)
T KOG1013|consen 80 GALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT 159 (362)
T ss_pred cchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence 457788899988888887765432 35579999987 33469999999999999999999998888888
Q ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccccc
Q psy12096 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI 154 (173)
Q Consensus 118 ~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~ 154 (173)
....+++.|+|.+.+.+++++|+..++|..+.+.+..
T Consensus 160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k 196 (362)
T KOG1013|consen 160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRK 196 (362)
T ss_pred hhhhhheeeccCcccccccCcccchhhhhccChhhcc
Confidence 7788999999999999999999999999888766544
No 118
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.40 E-value=1e-06 Score=84.97 Aligned_cols=71 Identities=14% Similarity=0.322 Sum_probs=59.5
Q ss_pred CCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 77 IANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 77 ~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
..|||+.+. ....-||+++++++||+|||+|... + ..+. ..|.+.+||.+.+..+.++|.++++|..+...
T Consensus 458 ~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~-l--ns~~-d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~ 530 (1227)
T COG5038 458 TVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYIL-L--NSFT-DPLNLSLYDFNSFKSDKVVGSTQLDLALLHQN 530 (1227)
T ss_pred CCCceEEEEeccccCCccceeeccCCccccceEEEE-e--cccC-CceeEEEEeccccCCcceeeeEEechHHhhhc
Confidence 469999987 5556799999999999999998765 4 3444 48999999999999999999999998877533
No 119
>KOG1031|consensus
Probab=98.40 E-value=2.6e-07 Score=84.06 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=72.0
Q ss_pred CccEEEe-cCeEEeecccCCCCCCeee-cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccccc----
Q psy12096 79 NESMKIA-DKVAEETGMPPWVVVSIFI-ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ---- 152 (173)
Q Consensus 79 dPyVkv~-~~~k~kTkv~kktlnP~wn-Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~---- 152 (173)
|-||++. ....+||.+..+++||.|| +.|.|. |...++++..|++++.|+|..+.||-||.+.+.++.+....
T Consensus 26 dafveik~~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqa 104 (1169)
T KOG1031|consen 26 DAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQA 104 (1169)
T ss_pred hheeEEEecccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhh
Confidence 6788887 6668999999999999999 889999 99999999999999999999999999999999988764331
Q ss_pred ------ccceeEeCccC
Q psy12096 153 ------TIEEWRELQSV 163 (173)
Q Consensus 153 ------~~~~W~~L~p~ 163 (173)
....|+++...
T Consensus 105 vhgkgtvisgw~pifdt 121 (1169)
T KOG1031|consen 105 VHGKGTVISGWFPIFDT 121 (1169)
T ss_pred hcCCceEEeeeeeccee
Confidence 22579998653
No 120
>PLN02270 phospholipase D alpha
Probab=98.36 E-value=1.5e-06 Score=81.83 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=71.0
Q ss_pred eccCCCccEEEe--cCeEEeecccCCC-CCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCcccc
Q psy12096 74 KKEIANESMKIA--DKVAEETGMPPWV-VVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 150 (173)
Q Consensus 74 k~~~~dPyVkv~--~~~k~kTkv~kkt-lnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~ 150 (173)
.+...+|||.+. ..+..||+++.+. .||.|||+|... +.. .. ..+.|+|.|.|.++. .+||.+.||...+..
T Consensus 43 ~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~-~ah--~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~ 117 (808)
T PLN02270 43 GKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY-CAH--MA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILD 117 (808)
T ss_pred CCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe-ecc--Cc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcC
Confidence 345679999998 5667899999884 699999999877 543 22 479999999999987 499999999999977
Q ss_pred ccccceeEeCccCC
Q psy12096 151 AQTIEEWRELQSVE 164 (173)
Q Consensus 151 ~~~~~~W~~L~p~~ 164 (173)
+...+.|++|....
T Consensus 118 g~~i~~~~~~~~~~ 131 (808)
T PLN02270 118 GEEVDRWVEILDND 131 (808)
T ss_pred CCccccEEeccCCC
Confidence 77889999996654
No 121
>KOG1011|consensus
Probab=98.36 E-value=9.3e-07 Score=81.31 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=72.1
Q ss_pred CCCccEEEe--------cCeEEeecccCCCCCCeeecEEEecccCccc-CCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096 77 IANESMKIA--------DKVAEETGMPPWVVVSIFIERQILEGVPYAD-AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ 147 (173)
Q Consensus 77 ~~dPyVkv~--------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~-l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~ 147 (173)
.--|||.++ +++|+.|+...++..|.|||+|.|- +..+. .....|.|+|.||.-...+..+|.+.+.|.+
T Consensus 1144 mFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~-Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~ 1222 (1283)
T KOG1011|consen 1144 MFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFF-LGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRS 1222 (1283)
T ss_pred ccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEE-eccCCCCceEEEEEeehhheeecccceeeeeeeehhh
Confidence 346999987 5678889999999999999999998 76543 3346899999999988888899999999999
Q ss_pred cccccccceeEeCccC
Q psy12096 148 IDLAQTIEEWRELQSV 163 (173)
Q Consensus 148 l~~~~~~~~W~~L~p~ 163 (173)
+...+....|++|..+
T Consensus 1223 va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1223 VADKGSCACWVPLGRR 1238 (1283)
T ss_pred HhhcCceeEeeecccc
Confidence 9877777899999654
No 122
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.24 E-value=2.2e-06 Score=64.66 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=63.6
Q ss_pred CCccEEEe-----cCeEEeecccCCCCCCeeecEEEecccCc-------------ccCCCCEEEEEEEEcCCC-------
Q psy12096 78 ANESMKIA-----DKVAEETGMPPWVVVSIFIERQILEGVPY-------------ADAMNKTLVFAIFDFDRF------- 132 (173)
Q Consensus 78 ~dPyVkv~-----~~~k~kTkv~kktlnP~wnEtf~F~gV~~-------------~~l~~~~L~~~V~D~d~~------- 132 (173)
.|+||++. ++.+++|+++.++..|.|+.+++|. ++. +-+....+.|.||....-
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 58999987 6678999999999999999999999 661 123345689999975533
Q ss_pred ---CCCceeEEEEEeCCccc-cccccceeEeC
Q psy12096 133 ---SKHDQIGEVKVALCQID-LAQTIEEWREL 160 (173)
Q Consensus 133 ---~~~d~IG~v~l~L~~l~-~~~~~~~W~~L 160 (173)
..|-.||.+.+|+.++- ...+...||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 23458999999999884 34467899975
No 123
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.01 E-value=2.3e-05 Score=57.19 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=49.5
Q ss_pred CCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096 77 IANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 149 (173)
Q Consensus 77 ~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~ 149 (173)
..+|||.+. ...+.||+.- .||.|||+|.|+ |.. ...+++.|||... .+.-.||...+.++++.
T Consensus 22 ~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~-Vdk----~nEiel~VyDk~~-~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 22 RPETYVSIKVEDVERARTKPS---RNDRWNEDFEIP-VEK----NNEEEVIVYDKGG-DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCCcEEEEEECCEEEEeccCC---CCCcccceEEEE-ecC----CcEEEEEEEeCCC-CeecceeeehhhHHHHH
Confidence 359999988 4447888874 799999999999 832 4589999999643 33457999999888774
No 124
>KOG2060|consensus
Probab=97.98 E-value=2e-06 Score=74.55 Aligned_cols=86 Identities=13% Similarity=0.259 Sum_probs=72.1
Q ss_pred cCCCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEE-EcCCCCCCceeEEEEEeCCcc
Q psy12096 76 EIANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQI 148 (173)
Q Consensus 76 ~~~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~-D~d~~~~~d~IG~v~l~L~~l 148 (173)
...+||||++ ...|.||+..++|++|.|-..+.|. - ....+.|.++|| ||.++-+..|+|.+++-|.++
T Consensus 289 ~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~---sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL 364 (405)
T KOG2060|consen 289 SLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-Q---SPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDEL 364 (405)
T ss_pred cccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-c---CCCccEEEEEEeccccccchHHHhhHHHHHhhhh
Confidence 3568999999 3348999999999999999998998 3 345679999999 699998999999999999999
Q ss_pred cccc-ccceeEeCccCCc
Q psy12096 149 DLAQ-TIEEWRELQSVEG 165 (173)
Q Consensus 149 ~~~~-~~~~W~~L~p~~~ 165 (173)
.+.. ....||+|.+...
T Consensus 365 ~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 365 NLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred ccccccceeeeeccCCcc
Confidence 8765 5679999987643
No 125
>PLN02964 phosphatidylserine decarboxylase
Probab=97.65 E-value=3.3e-05 Score=71.82 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096 78 ANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 155 (173)
Q Consensus 78 ~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~ 155 (173)
.|||..+- ..+.+||.+.++|+||+|||...|. |....+. ..+|.|||+++++.|+++|.+.++|..+...+..+
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~e 144 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLL-LEKNGPH--LARISVFETNRLSKNTLVGYCELDLFDFVTQEPES 144 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceE-eccCCcc--eEEEEEEecCCCCHHHhhhheeecHhhccHHHHHH
Confidence 48876654 6778999999999999999988888 7665543 56999999999999999999999988776443323
Q ss_pred ee--EeCccCCccc
Q psy12096 156 EW--RELQSVEGEG 167 (173)
Q Consensus 156 ~W--~~L~p~~~~~ 167 (173)
.| |.+..+.+.+
T Consensus 145 lkeaF~lfD~dgdG 158 (644)
T PLN02964 145 ACESFDLLDPSSSN 158 (644)
T ss_pred HHHHHHHHCCCCCC
Confidence 22 4444444443
No 126
>PLN02352 phospholipase D epsilon
Probab=97.53 E-value=0.0002 Score=67.51 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=58.0
Q ss_pred CccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc-cc
Q psy12096 79 NESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-IE 155 (173)
Q Consensus 79 dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~-~~ 155 (173)
+|||.+. ..+..|| .+.-||.|||+|... +.. .....+.|+|.| ...+||.+.+|...+..+.. .+
T Consensus 37 ~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~-~ah--~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~ 105 (758)
T PLN02352 37 ATYVTIKIGNKKVAKT---SHEYDRVWNQTFQIL-CAH--PLDSTITITLKT-----KCSILGRFHIQAHQIVTEASFIN 105 (758)
T ss_pred CceEEEEeCCcEEecC---CCCCCCccccceeEE-eee--ecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccc
Confidence 9999998 5556778 555699999999877 543 222469999988 25799999999999866655 78
Q ss_pred eeEeCccCC
Q psy12096 156 EWRELQSVE 164 (173)
Q Consensus 156 ~W~~L~p~~ 164 (173)
.|++|....
T Consensus 106 ~~~~~~~~~ 114 (758)
T PLN02352 106 GFFPLIMEN 114 (758)
T ss_pred eEEEcccCC
Confidence 999986643
No 127
>KOG1326|consensus
Probab=97.46 E-value=3.5e-05 Score=73.60 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=57.2
Q ss_pred ccCCCccEEEec-Ce--EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096 75 KEIANESMKIAD-KV--AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ 147 (173)
Q Consensus 75 ~~~~dPyVkv~~-~~--k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~ 147 (173)
++.+||||++.. ++ .-+...+.+|+||+|++.|.+. .... ..+.|.+.|||+|.++.++.||+..+.|+.
T Consensus 631 ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~-~~lp--~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 631 NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELE-CLLP--FEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhh-cccc--hhhcceeEEEEeecccccchhhceehhhhh
Confidence 356899999983 32 3677889999999999999877 4332 246899999999999999999999998765
No 128
>KOG1327|consensus
Probab=97.32 E-value=0.00045 Score=62.68 Aligned_cols=90 Identities=12% Similarity=0.229 Sum_probs=67.5
Q ss_pred cCCCccEEEe----c---CeEEeecccCCCCCCeeecEEEecccCcccCC----CCEEEEEEEEcCCCCCCceeEEEEEe
Q psy12096 76 EIANESMKIA----D---KVAEETGMPPWVVVSIFIERQILEGVPYADAM----NKTLVFAIFDFDRFSKHDQIGEVKVA 144 (173)
Q Consensus 76 ~~~dPyVkv~----~---~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~----~~~L~~~V~D~d~~~~~d~IG~v~l~ 144 (173)
...|||..++ . ..-.+|.++++++||.|-+ |. |+...++ ++.+.+.+||++..+++++||++.-+
T Consensus 155 ~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt 230 (529)
T KOG1327|consen 155 SKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FS-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTT 230 (529)
T ss_pred ccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cc-cchhhhcccCCCCceEEEEeccCCCCCcCceeEeccc
Confidence 3468998887 1 1258999999999999995 34 4444444 36788999999999999999999999
Q ss_pred CCccccccccceeEeCccCCccccc
Q psy12096 145 LCQIDLAQTIEEWRELQSVEGEGGQ 169 (173)
Q Consensus 145 L~~l~~~~~~~~W~~L~p~~~~~~~ 169 (173)
+..+........|....+..+.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~k 255 (529)
T KOG1327|consen 231 LSELQEPGSPNQIMLINPKKKAKKK 255 (529)
T ss_pred HHHhcccCCcccccccChhhhhhhh
Confidence 8887543334578777777666553
No 129
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.53 E-value=0.0073 Score=46.91 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=46.0
Q ss_pred eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096 91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQI 148 (173)
Q Consensus 91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l 148 (173)
.|..+.-+..+.|||.+.|+ |...++. +..|.|+||+++..++...+|.+.++|-+.
T Consensus 50 ~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 50 QTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45444445678899999999 9988886 468999999988766677999999998765
No 130
>KOG1265|consensus
Probab=96.14 E-value=0.0095 Score=57.04 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=75.2
Q ss_pred eecCCCCchhhhhhhhccCCcccCCCCCCCcccceecchheecccccceeeEEe---eeccCCCccEEEe--------cC
Q psy12096 19 FNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVAS---IKKEIANESMKIA--------DK 87 (173)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~lv~~---ik~~~~dPyVkv~--------~~ 87 (173)
.|...|=.+-.|-+.|.+..--+|+.-|-| ..+++. +.+.|++ +.......||.+. .+
T Consensus 669 yNG~sGYllKPdfmRrpDr~fdPFse~~Vd------gvIA~t-----~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~R 737 (1189)
T KOG1265|consen 669 YNGGSGYLLKPDFMRRPDRQFDPFSESPVD------GVIAAT-----LSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIR 737 (1189)
T ss_pred ecCCccceeChHHhhCCCcCcCCcccCccc------ceEEee-----EEEEEEeeeeccccccCceEEEEecCCCchhhh
Confidence 455666666667777776655555332211 111111 1111221 2233456898876 34
Q ss_pred eEEeecccC-CCCCCeee-cEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 88 VAEETGMPP-WVVVSIFI-ERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 88 ~k~kTkv~k-ktlnP~wn-Etf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
+.++|++.. +++||+|+ |.|.|..|-.++++ .|+|.||+.. +.+||+-.+|+..+..+
T Consensus 738 k~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiavyeEg----gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 738 KEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAVYEEG----GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred hhhhhccccCCCCCcccccCCcccceecccchh--heeeeeeccC----CceeeeeccchhcccCc
Confidence 568888776 67999999 57899987778886 6999999865 36999999999877644
No 131
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.98 E-value=0.032 Score=42.05 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=44.3
Q ss_pred eecccCCC-CCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCCCC----ceeEEEEEeCCccc
Q psy12096 91 ETGMPPWV-VVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFSKH----DQIGEVKVALCQID 149 (173)
Q Consensus 91 kTkv~kkt-lnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~~~----d~IG~v~l~L~~l~ 149 (173)
.|+...-+ .++.|||.+.|+ |...++. +..|.|+||..+..... ..||.+.++|-+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 45555444 799999999999 9888876 46799999998876655 69999999987763
No 132
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.95 E-value=0.062 Score=41.01 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=44.3
Q ss_pred eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC--CCceeEEEEEeCCccc
Q psy12096 91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS--KHDQIGEVKVALCQID 149 (173)
Q Consensus 91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~--~~d~IG~v~l~L~~l~ 149 (173)
.|.......++.|||.+.|+ +...++. +..|.|+||+.+..+ ....||.+.++|-+..
T Consensus 48 ~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 48 STKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred eccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEccc
Confidence 34333334679999999999 8887775 468999999987654 4579999999987753
No 133
>KOG1326|consensus
Probab=95.83 E-value=0.0079 Score=58.03 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=61.4
Q ss_pred cCCCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCc-ccC-----CCCEEEEEEEEcCCCCCCceeEEEEEeCCcc
Q psy12096 76 EIANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPY-ADA-----MNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 148 (173)
Q Consensus 76 ~~~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~-~~l-----~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l 148 (173)
...|||..+. ....+.|-++..|+||.||.+..|..+.. .+. .--.+.|.+||.|+.+.++++|+......-.
T Consensus 225 ~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~ 304 (1105)
T KOG1326|consen 225 DESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVM 304 (1105)
T ss_pred cCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEE
Confidence 4568998887 66678899999999999999999983321 000 0125789999999999999999976643222
Q ss_pred ccccccceeEeCc
Q psy12096 149 DLAQTIEEWRELQ 161 (173)
Q Consensus 149 ~~~~~~~~W~~L~ 161 (173)
.....-.|+++.
T Consensus 305 -~~~p~lkw~p~~ 316 (1105)
T KOG1326|consen 305 -VQCPALKWVPTM 316 (1105)
T ss_pred -ecCCccceEEee
Confidence 123446788764
No 134
>KOG3837|consensus
Probab=95.46 E-value=0.013 Score=52.06 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=62.6
Q ss_pred CCccEEEe------cCeEEeecccCCCCCCeeecEEEecccCccc---------CCCCEEEEEEEEcCCCC-CCceeEEE
Q psy12096 78 ANESMKIA------DKVAEETGMPPWVVVSIFIERQILEGVPYAD---------AMNKTLVFAIFDFDRFS-KHDQIGEV 141 (173)
Q Consensus 78 ~dPyVkv~------~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~---------l~~~~L~~~V~D~d~~~-~~d~IG~v 141 (173)
.|-||++. ...+.||.+++.|-+|.|+|.|-.. |.... .....+.|.+|....|- +|.++|.+
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~ 466 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTG 466 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhcCeeEEEeeccccccccceecee
Confidence 35677776 3458899999999999999999988 65411 11346899999877664 56699999
Q ss_pred EEeCCccccccccceeEeCcc
Q psy12096 142 KVALCQIDLAQTIEEWRELQS 162 (173)
Q Consensus 142 ~l~L~~l~~~~~~~~W~~L~p 162 (173)
.+.|.-+...-+....++|..
T Consensus 467 nikle~Len~cei~e~~~l~D 487 (523)
T KOG3837|consen 467 NIKLEILENMCEICEYLPLKD 487 (523)
T ss_pred eeeehhhhcccchhhceeccc
Confidence 999987765545567777744
No 135
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.28 E-value=0.073 Score=41.84 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=38.9
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCC---ceeEEEEEeCCc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKH---DQIGEVKVALCQ 147 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~---d~IG~v~l~L~~ 147 (173)
...|.+...+.+|.|+|+|..+ +|.....+..|.|++++...-... ..+|-+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 5788888888999999999999 998777788999999986543322 699999999977
No 136
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.26 E-value=0.15 Score=39.53 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=39.4
Q ss_pred CCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC----CCceeEEEEEeCCccc
Q psy12096 99 VVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS----KHDQIGEVKVALCQID 149 (173)
Q Consensus 99 lnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~----~~d~IG~v~l~L~~l~ 149 (173)
.++.|||.+.|+ |...++. ...|.|+||+...-. ....+|.+.++|-+..
T Consensus 53 ~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 53 SNPRWNEWLDYD-IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred CCCccceeEEcc-cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCC
Confidence 579999999999 9888876 468999999976422 2247999999987753
No 137
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.21 E-value=0.16 Score=39.91 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=44.2
Q ss_pred EeecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC----------------CCceeEEEEEeCCccc
Q psy12096 90 EETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS----------------KHDQIGEVKVALCQID 149 (173)
Q Consensus 90 ~kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~----------------~~d~IG~v~l~L~~l~ 149 (173)
..|+...-+-++.|||.+.|+ |...++. ...|.|+||+..... ....||.+.++|-+..
T Consensus 46 ~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 46 VKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred eEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 355555445679999999999 9888886 457999999975422 2369999999987753
No 138
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.11 E-value=0.19 Score=40.44 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=46.0
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCC----CCceeEEEEEeCC
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS----KHDQIGEVKVALC 146 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~----~~d~IG~v~l~L~ 146 (173)
..+|-|...+-+|.|+|++... ||.+...+..|.|+++...... ....+|-+.+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 6788888888899999999999 9999999999999997643221 1247898889884
No 139
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.18 E-value=0.13 Score=41.25 Aligned_cols=58 Identities=14% Similarity=0.014 Sum_probs=46.4
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCC-C-CceeEEEEEeCCc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS-K-HDQIGEVKVALCQ 147 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~-~-~d~IG~v~l~L~~ 147 (173)
..+|-|...+-+|.|||++... ||.+...+..|.|+++....-. . ...+|-+.+||-.
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 5788899888999999999999 9999998889999887633221 1 2579999999843
No 140
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.07 E-value=0.32 Score=37.78 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=50.1
Q ss_pred cCeEEeecccCCCCCCeeecEEEecccCcccCC-----------CCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096 86 DKVAEETGMPPWVVVSIFIERQILEGVPYADAM-----------NKTLVFAIFDFDRFSKHDQIGEVKVALCQID 149 (173)
Q Consensus 86 ~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~-----------~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~ 149 (173)
.+++++|+.+..+++|.|+|.|-|+ ++.+... ...+.+.|.-.|..+...++|.-.+....+-
T Consensus 43 ~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL 116 (156)
T PF15627_consen 43 RGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVL 116 (156)
T ss_pred cCceEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHh
Confidence 7789999999999999999999999 8765422 1357788887888777788888888766553
No 141
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.00 E-value=0.39 Score=38.05 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=42.2
Q ss_pred eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC----------------CCceeEEEEEeCCcc
Q psy12096 91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS----------------KHDQIGEVKVALCQI 148 (173)
Q Consensus 91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~----------------~~d~IG~v~l~L~~l 148 (173)
+|....-+-++.|||.+.|+ |...++. ...|.|+||++...+ .+..||-+.+.|-+.
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred eeeccCCCCCccccccEECc-cccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 45555555679999999999 9988886 457999999973221 245788888887665
No 142
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.67 E-value=0.21 Score=38.97 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=39.0
Q ss_pred CCeeecEEEecccCcccCC-CCEEEEEEEEcCCCC---------CCceeEEEEEeCCcc
Q psy12096 100 VSIFIERQILEGVPYADAM-NKTLVFAIFDFDRFS---------KHDQIGEVKVALCQI 148 (173)
Q Consensus 100 nP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~---------~~d~IG~v~l~L~~l 148 (173)
.+.|||.+.|+ +...++. +..|.|++|+....+ ....||.+.++|-+.
T Consensus 62 ~~~Wnewl~F~-i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 62 RVVWDEWIEFP-IPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred cccccceEECc-cchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 57799999999 8877775 468999999977554 346999999998776
No 143
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.54 E-value=0.45 Score=37.27 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=44.0
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC-----CCCceeEEEEEeCCc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF-----SKHDQIGEVKVALCQ 147 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~-----~~~d~IG~v~l~L~~ 147 (173)
...|-+..+ -+|.|+|++... +|.....+..|.|++++...- .....+|-+.+||-.
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344545555 899999999999 987666778999999986532 235689999999975
No 144
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=91.02 E-value=1.2 Score=38.75 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=60.9
Q ss_pred cCeEEeecccCCCCCCeeecEEEecccCcccC-----CCCEEEEEEEEcC-CCCCCceeEEEEEeCCcc---ccc--ccc
Q psy12096 86 DKVAEETGMPPWVVVSIFIERQILEGVPYADA-----MNKTLVFAIFDFD-RFSKHDQIGEVKVALCQI---DLA--QTI 154 (173)
Q Consensus 86 ~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l-----~~~~L~~~V~D~d-~~~~~d~IG~v~l~L~~l---~~~--~~~ 154 (173)
.....-|-.+..+-.|.||-.+.+. +....+ .+.-+++.+|-.| .-+..+.||.+.++|.+. ..+ ...
T Consensus 27 ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~ 105 (340)
T PF12416_consen 27 NGESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQK 105 (340)
T ss_pred CCceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccC
Confidence 6678889888899999999988888 543333 3456889999888 567788999999999988 433 344
Q ss_pred ceeEeCccCCc
Q psy12096 155 EEWRELQSVEG 165 (173)
Q Consensus 155 ~~W~~L~p~~~ 165 (173)
..||.|...+.
T Consensus 106 ~~W~~LL~~~~ 116 (340)
T PF12416_consen 106 PKWYKLLSSSS 116 (340)
T ss_pred CCeeEcccccc
Confidence 68999977643
No 145
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=90.75 E-value=0.99 Score=35.81 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=45.9
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCC------CceeEEEEEeCCc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSK------HDQIGEVKVALCQ 147 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~------~d~IG~v~l~L~~ 147 (173)
...|.|...+-+|.|+|++... +|..-..+..|.|+.++.+.-.+ ...+|-+.+||-.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 5778888888999999999999 99877777899999998443221 2469999999743
No 146
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.48 E-value=2.4 Score=33.78 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=46.3
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC--C-------CCceeEEEEEeCCc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF--S-------KHDQIGEVKVALCQ 147 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~--~-------~~d~IG~v~l~L~~ 147 (173)
...|.|...+-+|.|+|++... +|..-..+..|.|+.++.... . ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 5778888888999999999999 998777788999999986521 1 12469999999854
No 147
>KOG1327|consensus
Probab=87.08 E-value=0.67 Score=42.52 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=48.3
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCC----CCCceeEEEEEeCCccccc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~----~~~d~IG~v~l~L~~l~~~ 151 (173)
..+|.++++.+||.|-+.|... ...+..+ .|+|.++|.+.. ...+|+|++...+..+-..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~-y~fE~vQ--~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQ-YRFEKVQ--LLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ccceeeeeccCCccceeeechh-heeeeee--eEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 3589999999999999999877 6666654 799999997754 4578999999988876533
No 148
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.95 E-value=1.2 Score=31.57 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=29.6
Q ss_pred eecccCCCCCCeeecEEEecccCcccCC-CCEEEEEEEEcC
Q psy12096 91 ETGMPPWVVVSIFIERQILEGVPYADAM-NKTLVFAIFDFD 130 (173)
Q Consensus 91 kTkv~kktlnP~wnEtf~F~gV~~~~l~-~~~L~~~V~D~d 130 (173)
.|..+.-...+.|||.+.|+ |...++. ...|.|++|+..
T Consensus 52 ~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 52 STSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVK 91 (100)
T ss_pred EecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEee
Confidence 44444444568999999999 9888876 457999999864
No 149
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=82.99 E-value=3.5 Score=30.43 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=39.3
Q ss_pred CCCCCeeecEEEecccCcc------cCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccc
Q psy12096 97 WVVVSIFIERQILEGVPYA------DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 151 (173)
Q Consensus 97 ktlnP~wnEtf~F~gV~~~------~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~ 151 (173)
.+-.-.|||+|.+. +..- .+....+.|.|+....-++...+|.+.|.|.++...
T Consensus 48 ~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 48 KNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred cccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence 44567899999888 5431 245567999999875434436999999999988643
No 150
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=75.56 E-value=1.9 Score=31.50 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=29.0
Q ss_pred CCChhhhheeeeeee-eeecCCCCch--hhhhhhhccCCcccCCCCCCCcccceecchheec
Q psy12096 3 PFDKREVVQEVLNVI-SFNASTLPPL--VADSIKRKTQATTTTTPLPEDEEEDLEMTEAFED 61 (173)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 61 (173)
.|++|+.||++.+|| .+.. |.+. --+...+ .+-+....|+|.+.+.|..
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~--~~~~~~W~~L~~~--------~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQN--GQETDEWYPLSSA--------SPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCCeEEEEEEEHhHccC--CCcccEeEEcccC--------CCCCCCcCcEEEEEEEEEc
Confidence 478999999999999 4554 3221 1111111 1112345588888888763
No 151
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=71.25 E-value=4.1 Score=30.99 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=17.3
Q ss_pred CCChhhhheeeeeee-eeecC
Q psy12096 3 PFDKREVVQEVLNVI-SFNAS 22 (173)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~ 22 (173)
.+++|++||++.+|| .++.+
T Consensus 90 ~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 90 MGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred CCCCCceeEEEEEeccccccc
Confidence 468999999999999 67776
No 152
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=70.20 E-value=23 Score=27.37 Aligned_cols=79 Identities=18% Similarity=0.108 Sum_probs=51.5
Q ss_pred CccEEEe--cCeEEeecccCC--CCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccc-
Q psy12096 79 NESMKIA--DKVAEETGMPPW--VVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT- 153 (173)
Q Consensus 79 dPyVkv~--~~~k~kTkv~kk--tlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~- 153 (173)
.-|+|+. .+...+|+...- ...=.|||.|.+. |.. .. ..|.+.||.... ..+..|+++.+|+-.......
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~-i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~ 112 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQ-ITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTST 112 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEE-Eec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCCCcccccc
Confidence 4477776 444455554433 3344578999888 743 44 389999998766 677899999999866533211
Q ss_pred ---cceeEeCcc
Q psy12096 154 ---IEEWRELQS 162 (173)
Q Consensus 154 ---~~~W~~L~p 162 (173)
...|+...+
T Consensus 113 ~~~~~~~~eFsS 124 (168)
T PF15625_consen 113 DNVPLEEYEFSS 124 (168)
T ss_pred cCCceEeEEEcC
Confidence 345776644
No 153
>COG3621 Patatin [General function prediction only]
Probab=63.19 E-value=6.7 Score=34.36 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=30.0
Q ss_pred hhhheeeeeeeeeecCCCC-c-----------------hhhhhhhhccCCcccCCCC
Q psy12096 7 REVVQEVLNVISFNASTLP-P-----------------LVADSIKRKTQATTTTTPL 45 (173)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~ 45 (173)
-|++|+|++| ++|+++++ + -.-|+|-++|.|||+|.|.
T Consensus 126 kDL~~~Vvv~-~~~l~~~knp~~t~~~~~~~~~ry~~~~LsDii~~stAAPtyFp~h 181 (394)
T COG3621 126 KDLIGRVVVP-GYDLNNQKNPLFTFSTHHARPSRYNNYKLSDIILASTAAPTYFPPH 181 (394)
T ss_pred hhhccceEEE-eeecccccCCceeecccCccccccccchHHHHHHhcccCCcccCcc
Confidence 4899999887 57787777 1 2468999999999999663
No 154
>KOG1329|consensus
Probab=59.99 E-value=11 Score=36.66 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=60.9
Q ss_pred CccEEEe--cCeEEeecccCCC-CCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCccccccccc
Q psy12096 79 NESMKIA--DKVAEETGMPPWV-VVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 155 (173)
Q Consensus 79 dPyVkv~--~~~k~kTkv~kkt-lnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~~ 155 (173)
++|+.+. ...-.+|....+. -+|.|.++|... .... ...+.+++-+.+..+....+|.+.++.-.+..+....
T Consensus 139 e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~---~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 139 ENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIG---FAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred cchheeeechhhhhchhhhhcccccchhhhhcccc---cccc-ccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 6677665 3345667776666 789999877544 3333 3488999988888886789999999988776666778
Q ss_pred eeEeCccCCc
Q psy12096 156 EWRELQSVEG 165 (173)
Q Consensus 156 ~W~~L~p~~~ 165 (173)
.|+++.....
T Consensus 215 ~~~~Il~~d~ 224 (887)
T KOG1329|consen 215 GWFPILDNDG 224 (887)
T ss_pred ceeeeeccCC
Confidence 8999866554
No 155
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=56.42 E-value=16 Score=26.14 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=33.2
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCceeEEEEEeCCc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ 147 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~ 147 (173)
.-+|.-... .+..|++.|.++ +.. .+.|+|.||-.|- ..+-|-..+.|.+
T Consensus 22 VgqT~Wk~~-s~q~WDQ~Fti~-LdR----sRELEI~VywrD~---RslCav~~lrLEd 71 (98)
T cd08687 22 VGQTQWKPK-SNQAWDQSFTLE-LER----SRELEIAVYWRDW---RSLCAVKFLKLED 71 (98)
T ss_pred Eeecccccc-ccccccceeEEE-eec----ccEEEEEEEEecc---hhhhhheeeEhhh
Confidence 344443333 478899999998 643 5689999997664 2355666666665
No 156
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=55.99 E-value=12 Score=27.40 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=14.2
Q ss_pred CCChhhhheeeeeeee
Q psy12096 3 PFDKREVVQEVLNVIS 18 (173)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (173)
.|++|+.||++-+||.
T Consensus 73 ~~~~dd~iG~~~i~l~ 88 (121)
T cd04016 73 AFTMDERIAWTHITIP 88 (121)
T ss_pred CCcCCceEEEEEEECc
Confidence 5889999999999994
No 157
>KOG0906|consensus
Probab=51.71 E-value=17 Score=34.71 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=44.2
Q ss_pred eecEEEecccCcccCC-CCEEEEEEEEcCCCCCCceeEEEEEeCCccc--ccc---ccceeEeCccC
Q psy12096 103 FIERQILEGVPYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQID--LAQ---TIEEWRELQSV 163 (173)
Q Consensus 103 wnEtf~F~gV~~~~l~-~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~--~~~---~~~~W~~L~p~ 163 (173)
|||-+.+. |...++. +..|.+++||+..-..-.++|...+.+..-. +.+ ....|+..++.
T Consensus 79 wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~~~e~d 144 (843)
T KOG0906|consen 79 WNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWPSVEAD 144 (843)
T ss_pred hhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccccccCC
Confidence 99999999 9888875 5689999999877777789999888765432 222 23467766543
No 158
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=51.55 E-value=54 Score=25.24 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCeeecEEEecccCcccCCC-CEEEEEEEEcCCCCCCceeEEEEEeCCcccccc--ccceeEe
Q psy12096 100 VSIFIERQILEGVPYADAMN-KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRE 159 (173)
Q Consensus 100 nP~wnEtf~F~gV~~~~l~~-~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~--~~~~W~~ 159 (173)
.-.||.-|.+. ........ =.|.|+||..|.++++.+.|-..+.|-.-.... ....|.+
T Consensus 56 ~~~f~~P~d~~-~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~~~v~~wrP 117 (168)
T PF07162_consen 56 VAVFNHPFDLH-FKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPTQPGRHEVEVPTWRP 117 (168)
T ss_pred ceEEeccEEEE-EEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeCCCCceEEEEEEEEee
Confidence 45688776665 44333321 279999999999999999998776664332222 2357887
No 159
>KOG0694|consensus
Probab=49.96 E-value=4 Score=38.61 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=35.3
Q ss_pred cCCCccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcC
Q psy12096 76 EIANESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFD 130 (173)
Q Consensus 76 ~~~dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d 130 (173)
..-+||+.+. .+.-..+.+.+++..|.|+|+|..+ |.. ...+.|.|+...
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~-v~~----~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVE-VVA----GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeee-eec----CCceEEEEEecC
Confidence 3347888777 2223345557889999999999988 653 457888888644
No 160
>KOG1452|consensus
Probab=48.71 E-value=25 Score=30.75 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=45.3
Q ss_pred CccEEEe--cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCc--eeEEEEEeCCccc-cccc
Q psy12096 79 NESMKIA--DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD--QIGEVKVALCQID-LAQT 153 (173)
Q Consensus 79 dPyVkv~--~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d--~IG~v~l~L~~l~-~~~~ 153 (173)
+-|..+. ..++.+|.+.....--.|.|+|..+ +-. ...+.+-||.|+.-.++. ..| .+.+..+. .+..
T Consensus 75 ~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~D-vv~----~~vl~~lvySW~pq~RHKLC~~g--~l~~~~v~rqspd 147 (442)
T KOG1452|consen 75 CFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHD-VVN----IEVLHYLVYSWPPQRRHKLCHLG--LLEAFVVDRQSPD 147 (442)
T ss_pred eeeeeeeecccCccccccccCCCCccchhhceee-ccc----ceeeeEEEeecCchhhccccccc--hhhhhhhhhcCCc
Confidence 4455554 4445556555555555688999887 532 347889999999876665 344 33333332 1222
Q ss_pred cceeEeCccCCc
Q psy12096 154 IEEWRELQSVEG 165 (173)
Q Consensus 154 ~~~W~~L~p~~~ 165 (173)
...-..|+|+.+
T Consensus 148 ~~~Al~lePrgq 159 (442)
T KOG1452|consen 148 RVVALYLEPRGQ 159 (442)
T ss_pred ceeeeecccCCC
Confidence 234445666554
No 161
>KOG4028|consensus
Probab=41.81 E-value=32 Score=26.31 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=28.5
Q ss_pred EEEEEEEEcCCCCCCceeEEEEEeCCcccccccc--ceeEeCcc
Q psy12096 121 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI--EEWRELQS 162 (173)
Q Consensus 121 ~L~~~V~D~d~~~~~d~IG~v~l~L~~l~~~~~~--~~W~~L~p 162 (173)
.|.|+||..|.+++.++.|--.+-|-+-...... -.|.++.+
T Consensus 75 rl~~qiw~~dnfgr~eiagyg~~~lpsspgkh~la~~~wrp~gs 118 (175)
T KOG4028|consen 75 RLHFQIWHHDNFGRCEIAGYGFCHLPSSPGKHQLACGCWRPKGS 118 (175)
T ss_pred eeeeeeeecCcccceeecccceEeccCCCCcceecccccCCCCc
Confidence 5899999999999999888766555433222222 35776643
No 162
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=37.85 E-value=51 Score=22.14 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEEEEcCCCCCCceeEEEEEe
Q psy12096 121 TLVFAIFDFDRFSKHDQIGEVKVA 144 (173)
Q Consensus 121 ~L~~~V~D~d~~~~~d~IG~v~l~ 144 (173)
...|.+|+.|.+..+++|+++.-.
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEEC
Confidence 456899999988889999987664
No 163
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=32.79 E-value=43 Score=24.19 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=31.2
Q ss_pred EEeecccCCCCCCeeecEEEecccCcccC-----CCCEEEEEEEEcCCCCCCceeEEEEEeCCccc
Q psy12096 89 AEETGMPPWVVVSIFIERQILEGVPYADA-----MNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 149 (173)
Q Consensus 89 k~kTkv~kktlnP~wnEtf~F~gV~~~~l-----~~~~L~~~V~D~d~~~~~d~IG~v~l~L~~l~ 149 (173)
-+.|.++. ..+|.+|-+-.|. |..+++ +...+.+.++..- ......+|.+.+++..+-
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLL 74 (107)
T ss_dssp -EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHH
T ss_pred eeccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhh
Confidence 34566666 7899999999999 876543 3457888888744 334579999999988774
No 164
>KOG2419|consensus
Probab=28.27 E-value=16 Score=34.82 Aligned_cols=56 Identities=14% Similarity=-0.003 Sum_probs=40.1
Q ss_pred CCccEEEe-cCeEEeecccCCCCCCeeecEEEecccCcccCCCCEEEEEEEEcCCCCCCc
Q psy12096 78 ANESMKIA-DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136 (173)
Q Consensus 78 ~dPyVkv~-~~~k~kTkv~kktlnP~wnEtf~F~gV~~~~l~~~~L~~~V~D~d~~~~~d 136 (173)
.+|++... ...-++|+....+.+|+|||. .|. +..-+ .++.|...|.+++++..+|
T Consensus 305 ~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E-~~~Fq-sn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 305 DKWLAITSFGEQTFRTEISDDTEKPIYNED-ERE-DSDFQ-SNRYLGNKIVGYCELDLND 361 (975)
T ss_pred CCchheeecchhhhhhhhhccccccccccc-ccc-cccch-hhHHHhhhccccccccccc
Confidence 35555555 666789999999999999997 565 43211 2456777888888887777
No 165
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=27.93 E-value=30 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.1
Q ss_pred CCChhhhheeeeeeeeeecCCCCch
Q psy12096 3 PFDKREVVQEVLNVISFNASTLPPL 27 (173)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (173)
.|+=|+.+|+++|-+ +|.+||+++
T Consensus 70 ~F~~dd~lg~~vVkI-~d~~TgeVI 93 (120)
T COG1334 70 NFSYDDELGELVVKI-IDKDTGEVI 93 (120)
T ss_pred EEEEecccCcEEEEE-EECCCCcch
Confidence 588899999987654 899999985
No 166
>KOG0904|consensus
Probab=21.30 E-value=1.9e+02 Score=28.89 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.0
Q ss_pred EeecccCCCCCCeeecEEEecccCcccCCC-CEEEEEEEEc
Q psy12096 90 EETGMPPWVVVSIFIERQILEGVPYADAMN-KTLVFAIFDF 129 (173)
Q Consensus 90 ~kTkv~kktlnP~wnEtf~F~gV~~~~l~~-~~L~~~V~D~ 129 (173)
+.|.-+..+-+|.||+.+.|+ |.-.+++. ..|.|.||--
T Consensus 382 ~sTs~v~~~~~~~Wn~~leFD-I~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 382 RSTSEVPGCSFPLWNEWLEFD-IYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred cccCCCCCccchhccceeEee-eecCCCChhhhheeeeeEe
Confidence 344444447789999999999 88777764 3577777753
Done!