RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12096
(173 letters)
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 75.1 bits (185), Expect = 5e-18
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 168
+ + TL + DRFS+H GE+++ L + +W EL++ G
Sbjct: 82 LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 72.5 bits (178), Expect = 6e-17
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E
Sbjct: 100 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 71.5 bits (176), Expect = 8e-17
Identities = 7/53 (13%), Positives = 22/53 (41%)
Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
G + L ++ + ++ +G + + L +L++ +W +L +
Sbjct: 78 SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 72.0 bits (177), Expect = 8e-17
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 168
EG PY + + L + D+DRFS++D IGEV + L ++DL Q W++L+ G
Sbjct: 83 EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 71.6 bits (176), Expect = 9e-17
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 70.5 bits (173), Expect = 3e-16
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 161
+P+ +A +TL+ + DFD+FS+H IG+V V LC++DL + W+ L
Sbjct: 91 IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 70.5 bits (173), Expect = 4e-16
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ---SVEGEG 167
+P + +TL F+++ RF ++ +GE ++ + L + ++ L S E EG
Sbjct: 84 IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 69.7 bits (171), Expect = 5e-16
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
+ + M KTL ++D+DRFS +D +GEV + L W L+
Sbjct: 86 KSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 68.9 bits (169), Expect = 1e-15
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 163
G+ D KTL ++ D D+F ++ IGE + +L ++ Q L+ V
Sbjct: 88 HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 68.1 bits (167), Expect = 2e-15
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWREL 160
F E G+PY L F I FDRFS+ D IGEV + L I+L++ + RE+
Sbjct: 72 AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131
Query: 161 QS 162
S
Sbjct: 132 IS 133
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 64.7 bits (158), Expect = 4e-14
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRELQSVEG 165
V + +TL A+ + F D+ +G+V VAL +LA+ +W +L G
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 62.5 bits (152), Expect = 2e-12
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS E E
Sbjct: 77 VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 131
Score = 37.5 bits (87), Expect = 0.001
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
VP+ +V + D+D+ K+D IG+V V W ++
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL--RHWSDM 256
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 59.7 bits (145), Expect = 4e-12
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 111 GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-EEWRELQS 162
+ Y KTL + DR + +G +++L ++ + W L S
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 57.7 bits (140), Expect = 2e-11
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRELQS 162
V + + L ++D R + + +GE+ + L L W +LQ+
Sbjct: 80 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 57.8 bits (140), Expect = 2e-11
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
+ +D ++ L I+D+D S++D +G + + ++ A + W +L S E
Sbjct: 91 LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQE 141
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 56.9 bits (138), Expect = 3e-11
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 110 EGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRELQ 161
V + + L ++D R + + +GE+ + L L W +LQ
Sbjct: 77 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 129
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 59.5 bits (144), Expect = 3e-11
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV--ALCQIDLAQTIEEWRELQSVEGEGGQ 169
VP A+ + L F+++DFDRFS+HD IG+V + L + WR++ E
Sbjct: 78 VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKAD 137
Query: 170 IGK 172
+G+
Sbjct: 138 LGE 140
Score = 36.7 bits (85), Expect = 0.002
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
V N L A+ D+D ++ IG +V D E W E+
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEM 259
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 57.1 bits (138), Expect = 5e-11
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 118 MNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
K L ++ D+ R +G ++ L ++DL+ + W +L
Sbjct: 94 QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS 141
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 54.7 bits (132), Expect = 3e-10
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS-VEGE 166
++ L I+D+DR +++D +G + + ++ W +L + EGE
Sbjct: 79 SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPA-SGWYKLLNQEEGE 129
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 54.3 bits (131), Expect = 3e-10
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 108 ILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 167
+ + +L + DF+ ++ IG VAL + Q+ +L S+ E
Sbjct: 58 EFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEK 117
Query: 168 GQ 169
GQ
Sbjct: 118 GQ 119
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 52.8 bits (127), Expect = 2e-09
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI-DLAQTIEEWRELQSVEGEG 167
V D K L+ +++ S+ IG + + + + I W L E G
Sbjct: 86 VQEED-DQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG-EHLG 141
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 51.3 bits (123), Expect = 6e-09
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
L+F +FD +R ++ D +G+V V L + E
Sbjct: 84 QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT 126
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 47.7 bits (114), Expect = 1e-07
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQI 170
L IFD D ++ D +GE + L + + +I + E G+I
Sbjct: 70 TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEI 122
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 44.7 bits (106), Expect = 1e-06
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 164
L + D + + + +G + + + + E V
Sbjct: 66 PNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 113
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 44.7 bits (106), Expect = 2e-06
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
+ ++D K+L +++D+D +D IG ++ + + W E + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL--KHWYECLKNKDK 149
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG---GQI 170
++ L +FD D D +G+V + L I Q L++ + E G I
Sbjct: 71 IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVI 124
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 43.7 bits (103), Expect = 4e-06
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
++F +FD +R ++ D +G+V V L + E
Sbjct: 73 RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYT 114
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 42.7 bits (101), Expect = 7e-06
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
+P T++ + D D+ S++D IG++ ++ + W+++
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEV--KHWKDM 122
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 41.2 bits (97), Expect = 3e-05
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
+P ++ F + D +R S+++ IG + + W+E+
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG--GHWKEICD 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-05
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 41/175 (23%)
Query: 2 PPFDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTTTPL-----PEDEEEDLEMT 56
EV +L + LP + TT P E + L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPR----------EV-LTTNPRRLSIIAESIRDGLATW 344
Query: 57 EAFEDV-SEELSSTV-ASIKKEIANESMKIADKVA---EETGMPP------WVVVSIFIE 105
+ ++ V ++L++ + +S+ E K+ D+++ +P W V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 106 RQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
++ + +LV S ++L +E L
Sbjct: 405 MVVVNKL-----HKYSLVEKQPKESTISIPS---------IYLELKVKLENEYAL 445
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 40.5 bits (95), Expect = 5e-05
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
VP+ +V + D+D+ K+D IG+V V W ++
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL--RHWSDM 131
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 38.4 bits (89), Expect = 3e-04
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 121 TLVFAIFDFDRFSKHDQIGEVKVALCQI----DLAQTIEEWRELQ 161
L A+F + + ++ + T E W +L+
Sbjct: 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE 144
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 37.1 bits (86), Expect = 7e-04
Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 120 KTLVFAIFDFDRFSKHDQIGEVKVALCQI--DLAQTIEEWRELQSVEGE 166
+ + A+F D + + ++ + ++ E+W +L+ EG+
Sbjct: 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-PEGK 124
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 36.0 bits (83), Expect = 0.003
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 119 NKTLVFAIFDFDRFSKHDQIGEVKVALCQI---DLAQTIEEWRELQ 161
L F ++ +G + + + + + E LQ
Sbjct: 94 VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.004
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 48/156 (30%)
Query: 15 NVISFNASTLPPLVADSIKRKTQATTTTTPLPEDEE--EDLEMTEAFEDVSEELSSTVAS 72
+V+S S + +V R T +P DE + M ++ AS
Sbjct: 1775 DVMSI-ESLVE-VVF---YR---GMTMQVAVPRDELGRSNYGM------IAINPGRVAAS 1820
Query: 73 IKKEIANESMKIADKVAEETGMPPWVVVSI--F-IE-RQI-----LEGVPYADAMNKTLV 123
+E + ++V + TG +V I + +E +Q L + D + L
Sbjct: 1821 FSQEALQY---VVERVGKRTGW----LVEIVNYNVENQQYVAAGDLRAL---DTVTNVL- 1869
Query: 124 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 159
+ I K+ + ++ + ++EE
Sbjct: 1870 ------------NFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 31.9 bits (72), Expect = 0.11
Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 34/130 (26%)
Query: 47 EDEEEDLEMTE------------AFEDVSEE----LSSTVA--SIKKE------IANESM 82
E+ L T+ AFED+ + +T A S+ E +A + M
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL-GEYAALASLA-DVM 1777
Query: 83 KIAD--KVAEETGMPPWVVVSIFIERQILEGVPYAD-AMNKTLVFAIFDFDRFSKH-DQI 138
I +V GM + + + R L Y A+N V A F + +++
Sbjct: 1778 SIESLVEVVFYRGM----TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 139 GEVKVALCQI 148
G+ L +I
Sbjct: 1834 GKRTGWLVEI 1843
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 33.5 bits (77), Expect = 0.013
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 119 NKTLVFAIFDFDRFSKHDQ---IGEVKVALCQI-DLAQTIEEWRELQ 161
++ ++++ + K +G V++ I L T + +L
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLC 111
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 33.4 bits (75), Expect = 0.027
Identities = 13/67 (19%), Positives = 22/67 (32%)
Query: 103 FIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
+ E +P A+ L + K +G V V + + E+W +
Sbjct: 57 WGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL 116
Query: 163 VEGEGGQ 169
G GG
Sbjct: 117 PTGSGGS 123
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 33.3 bits (75), Expect = 0.030
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Query: 116 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-AQTIEEWRELQ 161
+ L ++D D D +G C + E EL
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGS-----CDRSPHSGFHEVTCELN 492
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.10
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 25/126 (19%)
Query: 20 NASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEA------FEDVSEELSSTVASI 73
++ + RK Q T + + E +LE + ED +E L I
Sbjct: 1235 SSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREI 1294
Query: 74 KKEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFA---IFDFD 130
E ++ + G + + P + L I D
Sbjct: 1295 HNEAESQLRAAQQ----QWGNDFY------------KRDPRIAPLRGALATYGLTIDDLG 1338
Query: 131 RFSKHD 136
S H
Sbjct: 1339 VASFHG 1344
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.80A {Homo sapiens}
Length = 306
Score = 29.9 bits (67), Expect = 0.43
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 4 FDKREVVQEVLNVISFNASTLPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVS 63
FDK V +E I + + E E +VS
Sbjct: 11 FDKAAVFEE----IDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVS 66
Query: 64 EELSSTVASIKKEIANESMKIADKVAEETGMPP 96
+E + + I+ E K VAE+ G+
Sbjct: 67 KEFCTDSGLVVPSISYELHKKLLSVAEKHGLTL 99
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 28.8 bits (65), Expect = 1.1
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 54 EMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPP 96
EM + F + E + + + N + KIA + + +
Sbjct: 369 EMLDCFSFLGPEKAKEIV-----VDN-TQKIASLIGDVKPIKD 405
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 27.5 bits (61), Expect = 1.6
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 121 TLVFAIFDFD-----------RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG-- 167
+ + D D + D +G+ + + L+ ++ W L +
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV--RTLSGEMDVWYNLDKRTDKSAV 135
Query: 168 -GQIG 171
G I
Sbjct: 136 SGAIR 140
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 28.1 bits (63), Expect = 1.8
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 57 EAFEDVS-EELSSTVASIKKEIANESMKIADKVAEETGMPPW---VVVSIF--------I 104
+ +S +++ + V +I K+A EETG W V+ ++F I
Sbjct: 26 KELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNYI 85
Query: 105 ERQILEGVPYADAMNKTLVFA 125
+ G+ D K + A
Sbjct: 86 KDMKTIGMLKEDNEKKVMEVA 106
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein,
RNA splicing, structural GENO joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Mus
musculus} PDB: 1o0p_A 1opi_A
Length = 105
Score = 27.1 bits (60), Expect = 1.8
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 21/100 (21%)
Query: 46 PEDEEEDLEMTEAFEDVSEELSS--TVASIKKEIANESMKIADKVAEETGMPPWVVVSIF 103
PE+ +D E E EDV +E S V SI+ + G+ IF
Sbjct: 16 PEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD------------GVEVPGCGKIF 63
Query: 104 IERQILEGVPYA-DAMN------KTLVFAIFDFDRFSKHD 136
+E + A + + +V D D + + D
Sbjct: 64 VEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRD 103
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto
membrane, phosphoprotein, structural protein,
acetylation, membrane; NMR {Mus musculus}
Length = 165
Score = 27.3 bits (60), Expect = 2.3
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 28 VADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIK 74
+ P D E+ E VSE++S +A+++
Sbjct: 115 LGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQ 161
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 27.5 bits (62), Expect = 2.7
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 83 KIADKVAEETGMPPWVVVSIFIERQILE 110
++A +++EE G ++ +E + E
Sbjct: 304 RVAKQLSEEGGSLKMYHIADRLETVMWE 331
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 27.1 bits (61), Expect = 3.0
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 83 KIADKVAEETGMPPWVVVSIFIERQILE 110
A K+A +S IE + +
Sbjct: 275 SWAQKLAPNAADGYLFDISDAIENTMQD 302
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 27.1 bits (60), Expect = 3.1
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 45 LPEDEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEE 91
+P+DE + + + + K I + ++AEE
Sbjct: 260 VPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEE 306
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 26.9 bits (60), Expect = 3.7
Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 46 PEDEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSI 102
+ + + + ++ + ++ +TV + + + ++ + A E G+ P VS+
Sbjct: 200 DPSYFKLVGLADLLDNNAAKIGATVKPMGAPLGHG---LSQRAASEMGLIPGTAVSV 253
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 26.7 bits (60), Expect = 4.1
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 83 KIADKVAEETGMPPWVVVSIFIERQILE 110
D + + P + + +E + E
Sbjct: 284 SALDAMIKHYDRPEMLGLYNGLEAAMEE 311
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 26.7 bits (60), Expect = 4.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 83 KIADKVAEETGMPPWVVVSIFIERQILE 110
K+A VAE+ G + +E + +
Sbjct: 273 KLARLVAEKHGHSKEYQILKIVEEEAGK 300
>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST
initiative, midwest center for structural genomics,
MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}
Length = 275
Score = 26.8 bits (59), Expect = 4.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 76 EIANESMKIADKVAEETGMPPWVVVSI 102
+ +E++KI AE+TG+ P ++V +
Sbjct: 61 QTFHEAVKIQSVRAEKTGVSPAIIVGV 87
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR
{Mus musculus} SCOP: a.24.9.2
Length = 137
Score = 26.2 bits (57), Expect = 4.4
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 28 VADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIK 74
+ P D E+ E VSE++S +A+++
Sbjct: 87 LGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQ 133
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 26.0 bits (57), Expect = 5.3
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 63 SEELSSTVASIKKEIANESMKIADKVAEETGMP--------PWVVVSIFIERQILEGVPY 114
E L T + ES A + +++ P W + I ++ QIL+ +
Sbjct: 17 GENLQQTRPIAAANLQWESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEF 76
Query: 115 ADAMNKTLVFAIFDFDRFSKHDQI 138
L DF + + +
Sbjct: 77 KHFAGVHLHMVEVDFPQKNHQPEE 100
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model,
ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3
PDB: 1eg0_G 1rip_A
Length = 89
Score = 24.9 bits (55), Expect = 7.9
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 105 ERQILEGVPYADAMNKTLVFAIFDFDRFSKH 135
+R++ G +D M+KT+ + + + KH
Sbjct: 1 QRKVYVGRVVSDKMDKTITVLV---ETYKKH 28
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T*
1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q
1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q*
1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Length = 105
Score = 25.0 bits (55), Expect = 8.5
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 106 RQILEGVPYADAMNKTLVFAIFDFDRFSKH 135
+++L GV +D M KT+ + +R H
Sbjct: 3 KKVLTGVVVSDKMQKTVTVLV---ERQFPH 29
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein
structure initiati midwest center for structural
genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Length = 382
Score = 25.7 bits (57), Expect = 9.9
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 21/87 (24%)
Query: 24 LPPLVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMK 83
+ ++ I+ + P E + D + L + I
Sbjct: 301 VASILERPIELPGREPEHAPPEGEPDTGD------RTRILALLGPSPVGI---------- 344
Query: 84 IADKVAEETGMPPWVVVSIFIERQILE 110
D + +G+ P VV +I +E LE
Sbjct: 345 --DDLIRLSGISPAVVRTILLE---LE 366
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 25.7 bits (56), Expect = 9.9
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 45 LPEDEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEE 91
+ +E + + + ++ K I ++ +++AEE
Sbjct: 278 ISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEE 324
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,661,202
Number of extensions: 158453
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 93
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)