RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12096
(173 letters)
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 54.0 bits (129), Expect = 2e-10
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
VPY++ KTLV A++DFDRFSKHD IGE KV + +D EEWR+LQS
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 50.9 bits (121), Expect = 2e-09
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 103 FIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQ 161
F E G+PY L F I FDRFS+ D IGEV + L I+L++ + RE+
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132
Query: 162 S 162
S
Sbjct: 133 S 133
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 46.0 bits (108), Expect = 2e-07
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 101 SIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 160
+ + I + + M KTL ++D+DRFS +D +GEV + L W L
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
Query: 161 QS 162
+
Sbjct: 137 KE 138
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 45.1 bits (106), Expect = 3e-07
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 102 IFIERQILEGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRE 159
+ + I V + + L ++D R + + +GE+ + L L W +
Sbjct: 65 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYK 123
Query: 160 LQ 161
LQ
Sbjct: 124 LQ 125
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 44.9 bits (105), Expect = 4e-07
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 168
+ + TL + DRFS+H GE+++ L + +W EL++ G
Sbjct: 82 LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 44.3 bits (104), Expect = 5e-07
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV-EGE 166
++ L I+D+D S++D +G + + ++ A ++ W +L S EGE
Sbjct: 80 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEGE 128
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 43.4 bits (101), Expect = 1e-06
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE--WRELQS 162
VP A+ + L F+++DFDRFS+HD IG+V + Q + WR++
Sbjct: 76 VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 40.6 bits (94), Expect = 1e-05
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
V N L A+ D+D ++ IG +V D E W E+ +
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLA 129
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 40.1 bits (93), Expect = 2e-05
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 112 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 162
+P ++ F + D +R S+++ IG + + W+E+
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT--AEGSGGGHWKEICD 123
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 38.6 bits (89), Expect = 1e-04
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 19/90 (21%)
Query: 87 KVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALC 146
+ + T P + F VP+ +V + D+D+ K+D IG+V V
Sbjct: 67 TIKKNTLNPYYNESFSFE-------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119
Query: 147 QIDLA------------QTIEEWRELQSVE 164
+ I +W LQ E
Sbjct: 120 STGAELRHWSDMLANPRRPIAQWHTLQVEE 149
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 37.4 bits (86), Expect = 2e-04
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE-EWRELQSVEGEGGQI 170
L IFD D ++ D +GE + L + + +I + E G+I
Sbjct: 69 GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEI 122
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 37.0 bits (85), Expect = 2e-04
Identities = 6/78 (7%), Positives = 15/78 (19%), Gaps = 1/78 (1%)
Query: 86 DKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 145
+ I L + D + + +G +
Sbjct: 36 STTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTV 94
Query: 146 CQIDLAQTIEEWRELQSV 163
+ + + E V
Sbjct: 95 SSMKVGEKKEVPFIFNQV 112
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 36.3 bits (83), Expect = 5e-04
Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 83 KIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 142
K ++ ++T P + + + ++D K+L +++D+D +D IG +
Sbjct: 53 KHKTQIKKKTLNPEFNEEFFYD-------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQ 105
Query: 143 VALCQIDLAQTIEEWRELQSVEGE 166
+ + + ++ W E + +
Sbjct: 106 LGIS--AKGERLKHWYECLKNKDK 127
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 35.2 bits (80), Expect = 0.001
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQIGK 172
++ L +FD D D +G+V + L I Q L++ + E G
Sbjct: 64 IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNKDLEQAFKGV 116
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 32.0 bits (72), Expect = 0.014
Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 5/60 (8%)
Query: 118 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-----TIEEWRELQSVEGEGGQIGK 172
L F ++ +G + + + + + +L + IG
Sbjct: 63 PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGD 122
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 31.7 bits (71), Expect = 0.019
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 113 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 166
+ F + D+D SK+D IG+ + + + L S G+
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL---KQGYRHVHLLSKNGD 116
>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 81
Score = 25.8 bits (57), Expect = 1.1
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 105 ERQILEGVPYADAMNKTLVFAIFDFDRFSKH 135
+R++ G +D M+KT+ + + + KH
Sbjct: 1 QRKVYVGRVVSDKMDKTITVLV---ETYKKH 28
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 160
Score = 25.7 bits (55), Expect = 2.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 3 PFDKREVVQEVLNVIS 18
+ R V +L VI+
Sbjct: 142 DYSDRVTVARLLGVIA 157
>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
thermophilus [TaxId: 274]}
Length = 100
Score = 24.7 bits (54), Expect = 3.1
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 106 RQILEGVPYADAMNKTLVFAIFDFDRFSKH 135
+++L GV +D M KT+ + +R H
Sbjct: 2 KKVLTGVVVSDKMQKTVTVLV---ERQFPH 28
>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 208
Score = 24.7 bits (53), Expect = 5.8
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 135 HDQIGEVKVALCQIDLAQTIEEWRELQS 162
I LC D+ + W++ Q+
Sbjct: 181 LADIEAAMPLLCTGDIPALYQHWKQRQA 208
>d1zwya1 c.51.4.3 (A:9-181) Hypothetical protein VC0702 {Vibrio
cholerae [TaxId: 666]}
Length = 173
Score = 24.3 bits (53), Expect = 7.0
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 27 LVADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKKE 76
++ +S +++ ++ + LP E L + DV +E+ T +K
Sbjct: 89 MIVESDQQRGESRSACLMLPPLVLERLRQAKELGDVMDEVFGTENIKQKG 138
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 23.8 bits (51), Expect = 8.3
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 17/98 (17%)
Query: 46 PEDEEEDLEMTEAFEDVSEELSSTVASIKKEIANESMKIADKVAEETGMPPWVVVSIFIE 105
PE+ +D E E EDV +E S +S++I V + F
Sbjct: 15 PEELLDDEEYEEIVEDVRDECSKYGLV-------KSIEIPRPVDGVEVPGCGKIFVEFTS 67
Query: 106 -------RQILEGVPYADAMNKTLVFAIFDFDRFSKHD 136
Q L G +A N+ +V D D + + D
Sbjct: 68 VFDCQKAMQGLTGRKFA---NRVVVTKYCDPDSYHRRD 102
>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 23.1 bits (50), Expect = 8.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 108 ILEGVPYADAMNKTLVFAIFDFDRFSKH 135
L+G +D M K++V AI +RF KH
Sbjct: 2 TLQGRVVSDKMEKSIVVAI---ERFVKH 26
>d1v9ca_ c.23.17.1 (A:) Precorrin-8x methylmutase {Thermus
thermophilus [TaxId: 274]}
Length = 204
Score = 24.0 bits (52), Expect = 8.8
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 75 KEIANESMKIADKVAEETGMPPWVVVSIFIERQILEGVPYADAMNKTLVFAIFDFDRFS 133
+ I ES +I D+ A G P E ++ + +A A F RFS
Sbjct: 1 RAIEEESFRIVDQEAGPHGFSPL-------EWPVVRRMIHATAD-----FEYKALTRFS 47
>d1u14a_ c.51.4.3 (A:) Hypothetical protein YjjX {Salmonella
typhimurium [TaxId: 90371]}
Length = 169
Score = 23.9 bits (52), Expect = 9.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 28 VADSIKRKTQATTTTTPLPEDEEEDLEMTEAFEDVSEELSSTVASIKKE 76
V D+ ++ +A + T PLP + + EA V + + +KE
Sbjct: 90 VIDNGVQRGEARSATLPLPAVILDRVRQGEALGPVMSQYTGIDEIGRKE 138
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 22.8 bits (49), Expect = 10.0
Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 7/28 (25%)
Query: 118 MNKTLVFAIFDFDR-------FSKHDQI 138
MNK +++A++D++ + D +
Sbjct: 2 MNKGVIYALWDYEPQNDDELPMKEGDCM 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 629,173
Number of extensions: 28630
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 36
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)