Query psy12097
Match_columns 74
No_of_seqs 102 out of 842
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:39:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0099|consensus 99.9 6E-22 1.3E-26 130.2 5.4 74 1-74 95-168 (379)
2 KOG0085|consensus 99.8 1.8E-20 4E-25 121.9 2.3 72 1-74 94-165 (359)
3 KOG0082|consensus 99.8 3.1E-19 6.7E-24 120.5 4.3 71 2-74 89-161 (354)
4 cd00066 G-alpha G protein alph 99.7 1.1E-16 2.5E-21 106.8 4.8 71 2-74 56-127 (317)
5 smart00275 G_alpha G protein a 99.6 3.3E-16 7.2E-21 105.6 4.5 71 2-74 77-150 (342)
6 PF00503 G-alpha: G-protein al 99.4 1.1E-13 2.4E-18 94.3 1.6 63 12-74 129-201 (389)
7 PRK04171 ribosome biogenesis p 60.3 7.8 0.00017 25.3 2.0 28 42-69 16-46 (222)
8 PHA03260 Capsid triplex subuni 60.0 16 0.00034 25.1 3.4 26 32-57 255-280 (339)
9 TIGR03793 TOMM_pelo TOMM prope 59.9 14 0.00029 20.2 2.6 17 38-54 7-23 (77)
10 PF10664 NdhM: Cyanobacterial 56.9 6.9 0.00015 22.7 1.2 16 44-59 38-53 (108)
11 PF10142 PhoPQ_related: PhoPQ- 53.4 7.1 0.00015 27.3 1.0 19 56-74 271-289 (367)
12 KOG0930|consensus 47.1 4.1 8.9E-05 28.0 -0.9 20 52-72 275-294 (395)
13 PF14834 GST_C_4: Glutathione 46.0 27 0.00059 20.7 2.5 25 31-55 89-113 (117)
14 PF11020 DUF2610: Domain of un 42.5 27 0.00058 19.4 2.0 35 31-72 44-78 (82)
15 PF02728 Cu_amine_oxidN3: Copp 40.9 53 0.0012 18.3 3.2 24 35-58 6-29 (101)
16 PF11748 DUF3306: Protein of u 40.6 13 0.00027 21.8 0.6 18 33-50 77-95 (115)
17 COG3226 Uncharacterized protei 40.0 5.5 0.00012 25.6 -1.1 37 37-74 18-58 (204)
18 PF06757 Ins_allergen_rp: Inse 37.9 55 0.0012 20.2 3.2 22 34-55 142-163 (179)
19 KOG2883|consensus 37.1 31 0.00068 22.8 2.0 24 35-58 102-125 (253)
20 PF08833 Axin_b-cat_bind: Axin 32.0 28 0.00061 17.1 1.0 14 39-52 10-23 (45)
21 PF03584 Herpes_ICP4_N: Herpes 30.4 36 0.00077 21.5 1.4 18 39-56 24-41 (173)
22 TIGR03795 chp_BMA0021 conserve 29.9 50 0.0011 19.4 1.9 23 33-55 13-35 (114)
23 PF12399 BCA_ABC_TP_C: Branche 29.9 50 0.0011 13.7 1.5 12 43-54 10-21 (23)
24 COG4883 Uncharacterized protei 29.7 42 0.00092 23.6 1.8 32 37-69 10-41 (500)
25 TIGR03512 GldD_lipo gliding mo 28.2 17 0.00037 23.2 -0.2 13 59-71 139-151 (186)
26 PF00153 Mito_carr: Mitochondr 27.4 49 0.0011 17.4 1.6 23 33-55 42-64 (95)
27 TIGR03412 iscX_yfhJ FeS assemb 27.3 1.1E+02 0.0023 16.2 3.9 31 18-48 29-61 (63)
28 PRK10721 hypothetical protein; 26.9 1.1E+02 0.0024 16.3 3.9 29 20-48 34-64 (66)
29 PF07319 DnaI_N: Primosomal pr 25.5 1.3E+02 0.0028 16.6 3.1 24 33-56 17-40 (94)
30 cd04749 Commd1_MURR1 COMM_Doma 25.1 78 0.0017 20.0 2.3 27 32-58 74-102 (174)
31 PF13186 SPASM: Iron-sulfur cl 24.7 88 0.0019 15.0 2.1 17 39-55 34-50 (64)
32 TIGR00828 EIID-AGA PTS system, 23.1 86 0.0019 21.1 2.3 30 32-61 31-62 (271)
33 PF07750 GcrA: GcrA cell cycle 21.0 81 0.0018 19.4 1.8 16 33-48 3-18 (162)
34 PF08083 PROCN: PROCN (NUC071) 20.6 20 0.00043 25.5 -1.1 40 33-73 154-193 (408)
35 COG1756 Mra1 Uncharacterized c 20.5 92 0.002 20.5 2.0 17 42-58 17-33 (223)
No 1
>KOG0099|consensus
Probab=99.86 E-value=6e-22 Score=130.23 Aligned_cols=74 Identities=61% Similarity=1.154 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhhhccCCCCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 1 m~~l~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
|+.|.|.+++++++++..+++|+++....++.+|+|+.+.++.||+|.||+.||+|+|||||.|+|+||||+++
T Consensus 95 M~~l~p~v~l~~~~~~~~~dYIls~~~~~~~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~ 168 (379)
T KOG0099|consen 95 MSNLVPPVELANPENQFRVDYILSVMNSPDFDYPPEFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKID 168 (379)
T ss_pred HhccCCCcccCCcccchhHHHHHhcCCCCcccCCHHHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhh
Confidence 67888889999999999999999998888888999999999999999999999999999999999999999875
No 2
>KOG0085|consensus
Probab=99.80 E-value=1.8e-20 Score=121.92 Aligned_cols=72 Identities=28% Similarity=0.565 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhhhccCCCCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 1 m~~l~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
|++| .|++..++|+.++..++......-..|...++.+|+.||.|||||+||+||+||||.|||+||++++|
T Consensus 94 MetL--~I~y~~e~nk~~A~~vrevd~ekVttfe~~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdld 165 (359)
T KOG0085|consen 94 METL--KIPYKREENKAHASLVREVDVEKVTTFEKRYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLD 165 (359)
T ss_pred HHHh--ccccccccchhhhhHhhhcchHHhhhhhHHHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhh
Confidence 6789 99999999999999998765443346889999999999999999999999999999999999999875
No 3
>KOG0082|consensus
Probab=99.77 E-value=3.1e-19 Score=120.53 Aligned_cols=71 Identities=35% Similarity=0.666 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCcccHHHHHHHhhhccCC-C-CCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 2 SQVNPPCTLEHPENQSRVDYIHNVASAH-D-FDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 2 ~~l~~~i~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
..+ ++++.+|.++.++..++...... + .+++++++++|++||+||+||+||+||++|+|+|||+|||++|+
T Consensus 89 ~~~--~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~ 161 (354)
T KOG0082|consen 89 ETL--GINLDDPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLD 161 (354)
T ss_pred HHh--cCCCCChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHH
Confidence 456 89999998888888887554333 2 46999999999999999999999999999999999999999975
No 4
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.66 E-value=1.1e-16 Score=106.77 Aligned_cols=71 Identities=37% Similarity=0.711 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCcccHHHHHHHhhhccC-CCCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 2 SQVNPPCTLEHPENQSRVDYIHNVASA-HDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 2 ~~l~~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
+.+ ++++.+++++..++.+...... ....+++++++.|.+||+|++||+||.||++|+|+||++|||++++
T Consensus 56 ~~~--~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ 127 (317)
T cd00066 56 ERL--NIPFGDPENEKDAKKILSFAPELEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLD 127 (317)
T ss_pred HHc--CCCCCChhhHHHHHHHHhccccccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHH
Confidence 456 7888989988888888766543 2346999999999999999999999999999999999999999874
No 5
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.63 E-value=3.3e-16 Score=105.59 Aligned_cols=71 Identities=30% Similarity=0.578 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCcccHHHHHHHhhhcc---CCCCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 2 SQVNPPCTLEHPENQSRVDYIHNVAS---AHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 2 ~~l~~~i~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
+.+ +|+++++.+...+..+..... ..+..+++++++.|+.||+||+||+||.||++|+|+||+.|||++++
T Consensus 77 ~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ 150 (342)
T smart00275 77 EEL--NIPFEDPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNID 150 (342)
T ss_pred HHc--CCCCCChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHH
Confidence 456 899998888777777766531 11235899999999999999999999999999999999999999864
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.39 E-value=1.1e-13 Score=94.26 Aligned_cols=63 Identities=38% Similarity=0.691 Sum_probs=49.7
Q ss_pred CcccHHHHHHHhhhccCCCC----------CCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 12 HPENQSRVDYIHNVASAHDF----------DYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 12 ~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
++.++..+..+......... .+++++++.|..||+|++||+||.++++|+|+|++.|||++++
T Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~ 201 (389)
T PF00503_consen 129 NEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLD 201 (389)
T ss_dssp STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHH
T ss_pred CHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhh
Confidence 56777777777655432221 3788999999999999999999999999999999999999864
No 7
>PRK04171 ribosome biogenesis protein; Provisional
Probab=60.30 E-value=7.8 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=20.4
Q ss_pred HHhhCCHHHHHHHHhhcc---cccccchHHh
Q psy12097 42 EELWKDKGVQACFERSNE---YQLIDCAKYL 69 (74)
Q Consensus 42 ~~LW~D~~iq~~~~r~~e---f~L~Dsa~YF 69 (74)
+++|++|+|.+--+||+. .+|.|+..++
T Consensus 16 ~ei~~hp~v~~~a~rr~K~p~~~LLd~~~H~ 46 (222)
T PRK04171 16 REIWNHPAVVKNARRRGKKPEEMLLDSSLHY 46 (222)
T ss_pred HHHhcCcHHHhhHHHcCCChhhhccChHHHH
Confidence 357999999887776663 4588886654
No 8
>PHA03260 Capsid triplex subunit 2; Provisional
Probab=60.03 E-value=16 Score=25.06 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhhCCHHHHHHHHhh
Q psy12097 32 DYPPEFYDIAEELWKDKGVQACFERS 57 (74)
Q Consensus 32 ~~~~~~~~~i~~LW~D~~iq~~~~r~ 57 (74)
...|.....|+-||+|+.++..|-.+
T Consensus 255 n~dP~tL~ei~~lw~d~~vadLf~Dg 280 (339)
T PHA03260 255 NAEPPSLDEMKGLIADAKLKMLMCDG 280 (339)
T ss_pred CCCchHHHHHHHHhcCHHHHHHHHHH
Confidence 56788899999999999999888543
No 9
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=59.85 E-value=14 Score=20.18 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=14.5
Q ss_pred HHHHHHhhCCHHHHHHH
Q psy12097 38 YDIAEELWKDKGVQACF 54 (74)
Q Consensus 38 ~~~i~~LW~D~~iq~~~ 54 (74)
+..|.+.|+|+..++.+
T Consensus 7 a~ivarAw~Dp~Fr~~L 23 (77)
T TIGR03793 7 EKIIAKAWEDEAFKQAL 23 (77)
T ss_pred HHHHHHHHcCHHHHHHH
Confidence 56789999999998865
No 10
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=56.90 E-value=6.9 Score=22.67 Aligned_cols=16 Identities=19% Similarity=0.661 Sum_probs=13.2
Q ss_pred hhCCHHHHHHHHhhcc
Q psy12097 44 LWKDKGVQACFERSNE 59 (74)
Q Consensus 44 LW~D~~iq~~~~r~~e 59 (74)
+|.|.++|++|++=.|
T Consensus 38 ~W~~~~l~kVy~~F~e 53 (108)
T PF10664_consen 38 NWNEEALQKVYRKFDE 53 (108)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6999999999987444
No 11
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=53.36 E-value=7.1 Score=27.27 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=15.9
Q ss_pred hhcccccccchHHhhccCC
Q psy12097 56 RSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 56 r~~ef~L~Dsa~YFld~l~ 74 (74)
-+-||.++|++.||++.|+
T Consensus 271 tgDeFf~pD~~~~y~d~L~ 289 (367)
T PF10142_consen 271 TGDEFFVPDSSNFYYDKLP 289 (367)
T ss_pred CCCceeccCchHHHHhhCC
Confidence 3457999999999999874
No 12
>KOG0930|consensus
Probab=47.14 E-value=4.1 Score=27.99 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHhhcccccccchHHhhcc
Q psy12097 52 ACFERSNEYQLIDCAKYLVSL 72 (74)
Q Consensus 52 ~~~~r~~ef~L~Dsa~YFld~ 72 (74)
++|.||. |-|.|+|-|||+-
T Consensus 275 ktWKrRW-FiLtdNCLYYFe~ 294 (395)
T KOG0930|consen 275 KTWKRRW-FILTDNCLYYFEY 294 (395)
T ss_pred cchhhee-EEeecceeeeeee
Confidence 5677766 9999999999973
No 13
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=46.00 E-value=27 Score=20.65 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHhhCCHHHHHHHH
Q psy12097 31 FDYPPEFYDIAEELWKDKGVQACFE 55 (74)
Q Consensus 31 ~~~~~~~~~~i~~LW~D~~iq~~~~ 55 (74)
.++|+....-....|+.|+||+=..
T Consensus 89 d~vP~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 89 DPVPERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHH
Confidence 4789999999999999999998654
No 14
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=42.52 E-value=27 Score=19.37 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhcc
Q psy12097 31 FDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSL 72 (74)
Q Consensus 31 ~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~ 72 (74)
+..|.++.+++.+|.+ +++.|..-+.|-+.|+|..
T Consensus 44 G~IP~~V~~sl~kL~~-------La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 44 GQIPEKVMDSLSKLYK-------LAKENNVSFEELCVYALGV 78 (82)
T ss_pred CCCCHHHHHHHHHHHH-------HHHHcCCCHHHHHHHHHHH
Confidence 4689999999877754 4566777788999999864
No 15
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=40.91 E-value=53 Score=18.27 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhc
Q psy12097 35 PEFYDIAEELWKDKGVQACFERSN 58 (74)
Q Consensus 35 ~~~~~~i~~LW~D~~iq~~~~r~~ 58 (74)
.|+..+-+.+.+||.+|++.++|.
T Consensus 6 ~E~~~~~~~~~~~p~~~~al~~rg 29 (101)
T PF02728_consen 6 EEFAEAEEIVKADPEFQAALKKRG 29 (101)
T ss_dssp HHHHHHHHHHHTGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCHHHHHHHHHhC
Confidence 577777788889999999999876
No 16
>PF11748 DUF3306: Protein of unknown function (DUF3306); InterPro: IPR021735 This family of proteobacterial species proteins has no known function.
Probab=40.55 E-value=13 Score=21.75 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.5
Q ss_pred CCHHHH-HHHHHhhCCHHH
Q psy12097 33 YPPEFY-DIAEELWKDKGV 50 (74)
Q Consensus 33 ~~~~~~-~~i~~LW~D~~i 50 (74)
.++.+- .++++||.||.+
T Consensus 77 V~~~lk~aALRkLf~~p~f 95 (115)
T PF11748_consen 77 VPEELKRAALRKLFSDPEF 95 (115)
T ss_pred CCHHHHHHHHHHHHcCccc
Confidence 344333 489999998875
No 17
>COG3226 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.99 E-value=5.5 Score=25.59 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred HHHHHHHhhCCHHHHHHHHhhc---cccc-ccchHHhhccCC
Q psy12097 37 FYDIAEELWKDKGVQACFERSN---EYQL-IDCAKYLVSLVK 74 (74)
Q Consensus 37 ~~~~i~~LW~D~~iq~~~~r~~---ef~L-~Dsa~YFld~l~ 74 (74)
+.++--++-+--||.. ...|. +-++ .-|+.|||++||
T Consensus 18 Iv~Aa~eli~~~Gv~a-V~HR~VAa~A~vPLgStTYYF~~lD 58 (204)
T COG3226 18 IVQAALELIKRYGVHA-VRHRAVAAEAGVPLGSTTYYFSDLD 58 (204)
T ss_pred HHHHHHHHHHhcchhh-hhHHHHHHHhCCCccceeeecccHH
Confidence 3444445555556533 22222 2333 257889998875
No 18
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=37.89 E-value=55 Score=20.18 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhhCCHHHHHHHH
Q psy12097 34 PPEFYDIAEELWKDKGVQACFE 55 (74)
Q Consensus 34 ~~~~~~~i~~LW~D~~iq~~~~ 55 (74)
+++..+.+.++|..+.+|....
T Consensus 142 S~ef~~~~~~~~~~~~~~~~~~ 163 (179)
T PF06757_consen 142 SPEFQQLYNALWASPEFQRLLN 163 (179)
T ss_pred CHHHHHHHHHHHcCHHHHHHHH
Confidence 5778889999999999999986
No 19
>KOG2883|consensus
Probab=37.11 E-value=31 Score=22.83 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhc
Q psy12097 35 PEFYDIAEELWKDKGVQACFERSN 58 (74)
Q Consensus 35 ~~~~~~i~~LW~D~~iq~~~~r~~ 58 (74)
+.+.+.+++||+|++.++.-.-++
T Consensus 102 ~~~~e~~~~l~n~ke~le~~~~rs 125 (253)
T KOG2883|consen 102 EHRDEVRKALANDKEYLEQSIERS 125 (253)
T ss_pred chHHHHHHHHhcCHHHHHHHhHHH
Confidence 568899999999999988764444
No 20
>PF08833 Axin_b-cat_bind: Axin beta-catenin binding domain; InterPro: IPR014936 Proteins in this entry are found on the scaffolding protein Axin which is a component of the beta-catenin destruction complex. It competes with the tumour suppressor adenomatous polyposis coli protein (APC) for binding to beta-catenin []. ; PDB: 1QZ7_B.
Probab=31.97 E-value=28 Score=17.13 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=4.9
Q ss_pred HHHHHhhCCHHHHH
Q psy12097 39 DIAEELWKDKGVQA 52 (74)
Q Consensus 39 ~~i~~LW~D~~iq~ 52 (74)
+-+.++|++||-+.
T Consensus 10 ~HvsRV~rtPg~~S 23 (45)
T PF08833_consen 10 DHVSRVWRTPGCQS 23 (45)
T ss_dssp HHHHHH--------
T ss_pred HHHHHHhcCCCCCC
Confidence 57889999998764
No 21
>PF03584 Herpes_ICP4_N: Herpesvirus ICP4-like protein N-terminal region; InterPro: IPR005206 The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the N-terminal region that contains sites for DNA binding and homodimerisation [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus
Probab=30.39 E-value=36 Score=21.47 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=14.4
Q ss_pred HHHHHhhCCHHHHHHHHh
Q psy12097 39 DIAEELWKDKGVQACFER 56 (74)
Q Consensus 39 ~~i~~LW~D~~iq~~~~r 56 (74)
+.-..||.||.|+++-+|
T Consensus 24 d~R~gLwd~peV~~A~~r 41 (173)
T PF03584_consen 24 DSRPGLWDDPEVREAAAR 41 (173)
T ss_pred CCCccccCCHHHHHHHHH
Confidence 345678999999998765
No 22
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=29.88 E-value=50 Score=19.44 Aligned_cols=23 Identities=4% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhhCCHHHHHHHH
Q psy12097 33 YPPEFYDIAEELWKDKGVQACFE 55 (74)
Q Consensus 33 ~~~~~~~~i~~LW~D~~iq~~~~ 55 (74)
|-..++.+|..-|+|+..+.-+.
T Consensus 13 f~~v~lraIA~AW~DpaFr~eLl 35 (114)
T TIGR03795 13 FRAVYLRAIALAWHSPEFKDELL 35 (114)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 55668899999999999876553
No 23
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=29.85 E-value=50 Score=13.73 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=8.3
Q ss_pred HhhCCHHHHHHH
Q psy12097 43 ELWKDKGVQACF 54 (74)
Q Consensus 43 ~LW~D~~iq~~~ 54 (74)
.+=+||.|+++|
T Consensus 10 ~i~~n~~V~~aY 21 (23)
T PF12399_consen 10 EIRANPEVREAY 21 (23)
T ss_pred HHhcCHHHHHhh
Confidence 345678888776
No 24
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.73 E-value=42 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=24.3
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcccccccchHHh
Q psy12097 37 FYDIAEELWKDKGVQACFERSNEYQLIDCAKYL 69 (74)
Q Consensus 37 ~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YF 69 (74)
+-+++-+-|.|-++-+ -.|+.||.+.|..+|-
T Consensus 10 vkeam~aqkadv~vik-kkrgkefki~d~kpyv 41 (500)
T COG4883 10 VKEAMGAQKADVGVIK-KKRGKEFKITDAKPYV 41 (500)
T ss_pred HHHHHhhhhhhhhhHh-hccCCeeeeccchhHH
Confidence 3467888899988643 2588899999998873
No 25
>TIGR03512 GldD_lipo gliding motility-associated lipoprotein GldD. Members of this protein family are found a number of Bacteriodetes lineage bacteria, including both species such as Flavobacterium johnsoniae, which possess a poorly understood form of rapid gliding motility, and other species which apparently do not. Mutation of GldD blocks both this motility and chitin utilization in the model species, Flavobacterium johnsoniae.
Probab=28.20 E-value=17 Score=23.18 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=11.1
Q ss_pred ccccccchHHhhc
Q psy12097 59 EYQLIDCAKYLVS 71 (74)
Q Consensus 59 ef~L~Dsa~YFld 71 (74)
.|.+.||+.+|+.
T Consensus 139 QFy~TDSt~HFl~ 151 (186)
T TIGR03512 139 QFYVTDSTKHFLR 151 (186)
T ss_pred eEEEeccccceee
Confidence 3899999999985
No 26
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=27.38 E-value=49 Score=17.41 Aligned_cols=23 Identities=9% Similarity=0.391 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHhhCCHHHHHHHH
Q psy12097 33 YPPEFYDIAEELWKDKGVQACFE 55 (74)
Q Consensus 33 ~~~~~~~~i~~LW~D~~iq~~~~ 55 (74)
-.......++.+|+..|++..|+
T Consensus 42 ~~~~~~~~~~~i~~~~G~~~ly~ 64 (95)
T PF00153_consen 42 PYQGVWQCLRKIYKEEGIRGLYR 64 (95)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccchhhhhccccC
Confidence 34567789999999999987764
No 27
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=27.33 E-value=1.1e+02 Score=16.20 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=20.6
Q ss_pred HHHHHhhhccCCCC--CCCHHHHHHHHHhhCCH
Q psy12097 18 RVDYIHNVASAHDF--DYPPEFYDIAEELWKDK 48 (74)
Q Consensus 18 ~~~~i~~~~~~~~~--~~~~~~~~~i~~LW~D~ 48 (74)
....|+.++...+. .-+..+.++|+.-|-|.
T Consensus 29 L~~wV~~L~~FdDdp~~~~EkiLEaIQ~aWieE 61 (63)
T TIGR03412 29 LHQWVLELPGFDDDPKRCNEKILEAIQMAWIDE 61 (63)
T ss_pred HHHHHHhCcCcCCCcccccHHHHHHHHHHHHHh
Confidence 33445555543332 36789999999999775
No 28
>PRK10721 hypothetical protein; Provisional
Probab=26.89 E-value=1.1e+02 Score=16.28 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHhhhccCCCC--CCCHHHHHHHHHhhCCH
Q psy12097 20 DYIHNVASAHDF--DYPPEFYDIAEELWKDK 48 (74)
Q Consensus 20 ~~i~~~~~~~~~--~~~~~~~~~i~~LW~D~ 48 (74)
..|+.++...+. .-++.+.++|+.-|-|.
T Consensus 34 ~wV~~L~~FdDdp~~~~EkiLEAIQ~aWieE 64 (66)
T PRK10721 34 QWICELEDFDDDPQASNEKILEAILLVWLDE 64 (66)
T ss_pred HHHHhCcCcCCCcccccHHHHHHHHHHHHHh
Confidence 344444443332 36789999999999775
No 29
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=25.53 E-value=1.3e+02 Score=16.60 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHhhCCHHHHHHHHh
Q psy12097 33 YPPEFYDIAEELWKDKGVQACFER 56 (74)
Q Consensus 33 ~~~~~~~~i~~LW~D~~iq~~~~r 56 (74)
+...+-+.+..+-+||.||+.++.
T Consensus 17 ~~~~~~~l~~~vl~dp~V~~Fl~~ 40 (94)
T PF07319_consen 17 FEERYEQLKQEVLSDPEVQAFLQE 40 (94)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHH
Confidence 445677889999999999988764
No 30
>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=25.07 E-value=78 Score=19.96 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhhCCHH--HHHHHHhhc
Q psy12097 32 DYPPEFYDIAEELWKDKG--VQACFERSN 58 (74)
Q Consensus 32 ~~~~~~~~~i~~LW~D~~--iq~~~~r~~ 58 (74)
.+|.+.+.+|.+.|++.. ||+.+.+++
T Consensus 74 Gl~~eha~~l~Kfwk~~~~klr~~l~~~S 102 (174)
T cd04749 74 GITSLQAAVIAKFWKVHKKKIRESLLAQS 102 (174)
T ss_pred CCChHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 489999999999999875 777775444
No 31
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=24.65 E-value=88 Score=15.01 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=12.6
Q ss_pred HHHHHhhCCHHHHHHHH
Q psy12097 39 DIAEELWKDKGVQACFE 55 (74)
Q Consensus 39 ~~i~~LW~D~~iq~~~~ 55 (74)
+.+..+|+.+..++.-+
T Consensus 34 ~~l~eiw~s~~~~~~r~ 50 (64)
T PF13186_consen 34 DSLEEIWNSPKFREFRK 50 (64)
T ss_pred CCHHHHHCCHHHHHHHH
Confidence 36888999988776643
No 32
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=23.13 E-value=86 Score=21.09 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHhh-CC-HHHHHHHHhhcccc
Q psy12097 32 DYPPEFYDIAEELW-KD-KGVQACFERSNEYQ 61 (74)
Q Consensus 32 ~~~~~~~~~i~~LW-~D-~~iq~~~~r~~ef~ 61 (74)
.|.-.+.+++++|+ +| +..++++.|..+|.
T Consensus 31 gf~~~m~P~L~KlY~~d~e~~~~Alkrhl~fF 62 (271)
T TIGR00828 31 GFCYAMIPAIKKLYPDDKAGRSAALKRHLEFF 62 (271)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35566788999999 45 57889998877754
No 33
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=20.97 E-value=81 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHhhCCH
Q psy12097 33 YPPEFYDIAEELWKDK 48 (74)
Q Consensus 33 ~~~~~~~~i~~LW~D~ 48 (74)
.+.+-.+.+++||++-
T Consensus 3 Wtde~~~~L~~lw~~G 18 (162)
T PF07750_consen 3 WTDERVERLRKLWAEG 18 (162)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 5677888999999884
No 34
>PF08083 PROCN: PROCN (NUC071) domain; InterPro: IPR012592 The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.57 E-value=20 Score=25.46 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccC
Q psy12097 33 YPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLV 73 (74)
Q Consensus 33 ~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l 73 (74)
+..|+.. +.++--|..||=-...-..|||.|+..|-|++|
T Consensus 154 L~REilr-~~K~iVD~hv~~rlgnida~qLadgl~yiF~hv 193 (408)
T PF08083_consen 154 LCREILR-FTKLIVDIHVQYRLGNIDAYQLADGLQYIFNHV 193 (408)
T ss_pred HHHHHHH-HHHHHhhhheeeeccCccHHHHHHHHHHHHHhh
Confidence 4556544 445556777764444556799999999999986
No 35
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=92 Score=20.51 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.2
Q ss_pred HHhhCCHHHHHHHHhhc
Q psy12097 42 EELWKDKGVQACFERSN 58 (74)
Q Consensus 42 ~~LW~D~~iq~~~~r~~ 58 (74)
..+|.+|+|.+.+.||+
T Consensus 17 ~~i~~hpav~~~akrrg 33 (223)
T COG1756 17 EEIVNHPAVLRDAKRRG 33 (223)
T ss_pred HHHhcCHHHHHHHHHhC
Confidence 35799999999998775
Done!