Query psy12097
Match_columns 74
No_of_seqs 102 out of 842
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 18:39:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 99.8 3.2E-21 1.1E-25 128.3 3.7 72 1-74 62-133 (327)
2 1azs_C GS-alpha; complex (lyas 99.8 1.5E-19 5E-24 123.0 4.6 72 3-74 112-183 (402)
3 4fid_A G protein alpha subunit 99.7 3.9E-19 1.3E-23 118.8 0.8 68 1-74 60-127 (340)
4 1zcb_A G alpha I/13; GTP-bindi 99.7 6.7E-19 2.3E-23 118.2 1.7 71 1-74 88-167 (362)
5 1cip_A Protein (guanine nucleo 99.7 2.1E-18 7.1E-23 115.5 1.8 71 2-74 88-159 (353)
6 2xtz_A Guanine nucleotide-bind 99.7 1.1E-17 3.7E-22 112.1 0.4 63 12-74 80-143 (354)
7 2lnm_A Protein TIC 40, chlorop 42.4 16 0.00053 18.0 1.8 14 42-55 15-28 (62)
8 3o7b_A Ribosome biogenesis NEP 41.1 18 0.00063 23.1 2.4 27 43-69 43-72 (244)
9 2llw_A Heat shock protein STI1 40.7 16 0.00054 18.8 1.7 15 41-55 22-36 (71)
10 3s6n_M SurviVal motor neuron p 37.5 17 0.00059 16.3 1.3 15 42-56 6-20 (37)
11 1uj8_A ORF3, hypothetical prot 30.6 56 0.0019 17.1 2.8 29 20-48 45-75 (77)
12 1qp6_A Protein (alpha2D); de n 30.4 33 0.0011 14.8 1.6 15 35-49 4-18 (35)
13 2k7r_A Primosomal protein DNAI 24.8 89 0.003 16.8 3.2 24 33-56 17-40 (106)
14 3hht_A NitrIle hydratase alpha 21.0 55 0.0019 20.5 1.9 21 34-54 60-80 (216)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.82 E-value=3.2e-21 Score=128.26 Aligned_cols=72 Identities=25% Similarity=0.548 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhhhccCCCCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 1 m~~l~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
|++| +|++++++++..++.++........+++++++++|+.||+|||||+||+||+||||+||++|||++++
T Consensus 62 ~~~l--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~ 133 (327)
T 3ohm_A 62 MDTL--KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLD 133 (327)
T ss_dssp HHHT--TCCCSSTHHHHHHHHHHTCCGGGCCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHH
T ss_pred HHhc--CCCCCCchhHHHHHHHhcccccccccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHH
Confidence 4568 89999999999999998776554567999999999999999999999999999999999999999863
No 2
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.77 E-value=1.5e-19 Score=122.97 Aligned_cols=72 Identities=58% Similarity=1.141 Sum_probs=62.5
Q ss_pred CCCCCCCCCCcccHHHHHHHhhhccCCCCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 3 QVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 3 ~l~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
.|.|.|++++++++..++.++.+....+.+|+++++++|+.||+|+|||+||.||+||||+||++|||++++
T Consensus 112 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ 183 (402)
T 1azs_C 112 NLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKID 183 (402)
T ss_dssp HSSSCCCCSSGGGHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHH
T ss_pred hcCCCcccCCchhHHHHHHHHhhcccCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHH
Confidence 343358999999998889888776544457999999999999999999999999999999999999999863
No 3
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.73 E-value=3.9e-19 Score=118.77 Aligned_cols=68 Identities=31% Similarity=0.551 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhhhccCCCCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 1 m~~l~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
|++| +|+++++.++..+ +... ....+++++++++|+.||+|+|||+||+||+||||+||++|||++|+
T Consensus 60 ~~~l--~i~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~ 127 (340)
T 4fid_A 60 SAIL--NHPMKYQPKSKEF---TTED-PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVK 127 (340)
T ss_dssp HHHT--TCCCSCCCCSGGG---SCCS-CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHH
T ss_pred HHHh--CCCCCChhhHHHH---hhcc-cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHH
Confidence 4567 8999998887655 3332 22356999999999999999999999999999999999999999863
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.72 E-value=6.7e-19 Score=118.19 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhhhccCC--------C-CCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhc
Q psy12097 1 MSQVNPPCTLEHPENQSRVDYIHNVASAH--------D-FDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVS 71 (74)
Q Consensus 1 m~~l~~~i~~~~~~~~~~~~~i~~~~~~~--------~-~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld 71 (74)
|+.| +|+++++.++..++.++.+.... + ..| ++++++|+.||+|||||+||+||+||||+||++|||+
T Consensus 88 ~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~ 164 (362)
T 1zcb_A 88 REKL--HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLD 164 (362)
T ss_dssp HHHT--TCCCSSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHT
T ss_pred HHHc--CCCCCCcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHH
Confidence 3457 89999999998888887665421 1 246 8999999999999999999999999999999999999
Q ss_pred cCC
Q psy12097 72 LVK 74 (74)
Q Consensus 72 ~l~ 74 (74)
+++
T Consensus 165 ~~~ 167 (362)
T 1zcb_A 165 NLD 167 (362)
T ss_dssp THH
T ss_pred HHH
Confidence 863
No 5
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.70 E-value=2.1e-18 Score=115.49 Aligned_cols=71 Identities=31% Similarity=0.510 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCcccHHHHHHHhhhccCCC-CCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 2 SQVNPPCTLEHPENQSRVDYIHNVASAHD-FDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 2 ~~l~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
+.+ +|++++++++..++.++.+....+ ..++++++.+|+.||+|||||+||.||+||+|+|||.|||++++
T Consensus 88 ~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ 159 (353)
T 1cip_A 88 GRL--KIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLD 159 (353)
T ss_dssp HHH--TCCCSSTTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHH
T ss_pred HHh--CCCCCCcchHHHHHHHHhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHH
Confidence 456 899999999988888877654322 46999999999999999999999999999999999999999863
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.65 E-value=1.1e-17 Score=112.10 Aligned_cols=63 Identities=27% Similarity=0.421 Sum_probs=50.5
Q ss_pred CcccHHHHHHHhhhccCC-CCCCCHHHHHHHHHhhCCHHHHHHHHhhcccccccchHHhhccCC
Q psy12097 12 HPENQSRVDYIHNVASAH-DFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYLVSLVK 74 (74)
Q Consensus 12 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFld~l~ 74 (74)
++.++..+..+....... ...++++++++|++||+|+|||+||+||+||||+||++|||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ 143 (354)
T 2xtz_A 80 SSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLK 143 (354)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHH
T ss_pred ChhHHHHHHHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHH
Confidence 445555666665543222 246899999999999999999999999999999999999999863
No 7
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=42.39 E-value=16 Score=18.05 Aligned_cols=14 Identities=21% Similarity=0.276 Sum_probs=7.1
Q ss_pred HHhhCCHHHHHHHH
Q psy12097 42 EELWKDKGVQACFE 55 (74)
Q Consensus 42 ~~LW~D~~iq~~~~ 55 (74)
..+-+||.+..++.
T Consensus 15 ~~~m~dP~~~~~lq 28 (62)
T 2lnm_A 15 AMAFQNPRVQAALM 28 (62)
T ss_dssp HHHTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33445555555554
No 8
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=41.05 E-value=18 Score=23.06 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=20.0
Q ss_pred HhhCCHHHHHHHHhhc---ccccccchHHh
Q psy12097 43 ELWKDKGVQACFERSN---EYQLIDCAKYL 69 (74)
Q Consensus 43 ~LW~D~~iq~~~~r~~---ef~L~Dsa~YF 69 (74)
.+|++|+|.+--.||. ++.|.|+...+
T Consensus 43 ei~~hp~v~~~a~rrgk~p~~~LLd~~~H~ 72 (244)
T 3o7b_A 43 KIRGHPAVRADAIRRGKRPEKILLDDSKHH 72 (244)
T ss_dssp GGTTSHHHHHHHHHHTSCGGGSBCCHHHHG
T ss_pred hhccCcchhhhhhhcCCCccccccchHHHH
Confidence 5799999876665554 38899987655
No 9
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=40.67 E-value=16 Score=18.79 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=8.6
Q ss_pred HHHhhCCHHHHHHHH
Q psy12097 41 AEELWKDKGVQACFE 55 (74)
Q Consensus 41 i~~LW~D~~iq~~~~ 55 (74)
|..+-+||.|+.++.
T Consensus 22 i~~im~DP~~~~~lq 36 (71)
T 2llw_A 22 VAAIMQDPVMQSILQ 36 (71)
T ss_dssp HHHHHTCTHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 334456666666664
No 10
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=37.49 E-value=17 Score=16.35 Aligned_cols=15 Identities=13% Similarity=0.804 Sum_probs=12.0
Q ss_pred HHhhCCHHHHHHHHh
Q psy12097 42 EELWKDKGVQACFER 56 (74)
Q Consensus 42 ~~LW~D~~iq~~~~r 56 (74)
..+|.|...-++|.+
T Consensus 6 SDiWDdtALIKayDK 20 (37)
T 3s6n_M 6 SDIWDDTALIKAYDK 20 (37)
T ss_pred hhhhhhHHHHHHHHH
Confidence 457999998888864
No 11
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=30.55 E-value=56 Score=17.14 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=18.1
Q ss_pred HHHhhhccCCCC--CCCHHHHHHHHHhhCCH
Q psy12097 20 DYIHNVASAHDF--DYPPEFYDIAEELWKDK 48 (74)
Q Consensus 20 ~~i~~~~~~~~~--~~~~~~~~~i~~LW~D~ 48 (74)
..|+.++...+. .-++.+.++|+.-|-|.
T Consensus 45 ~wV~~L~~FdDdp~~~nEkiLEAIQ~aWidE 75 (77)
T 1uj8_A 45 QWICDLEDFDDDPQASNEKILEAILLVWLDE 75 (77)
T ss_dssp HHHHTSTTBCSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCCcccccHHHHHHHHHHHHHh
Confidence 344444433332 36789999999999654
No 12
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=30.42 E-value=33 Score=14.85 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhCCHH
Q psy12097 35 PEFYDIAEELWKDKG 49 (74)
Q Consensus 35 ~~~~~~i~~LW~D~~ 49 (74)
.++-...+.||+.|-
T Consensus 4 eelekkfkelwkgpr 18 (35)
T 1qp6_A 4 EELEKKFKELWKGPR 18 (35)
T ss_dssp HHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhcCCc
Confidence 455677899999874
No 13
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=24.82 E-value=89 Score=16.76 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHhhCCHHHHHHHHh
Q psy12097 33 YPPEFYDIAEELWKDKGVQACFER 56 (74)
Q Consensus 33 ~~~~~~~~i~~LW~D~~iq~~~~r 56 (74)
|...+.+.+.++-+||.||+.++.
T Consensus 17 ~~~~~~~~~~~vl~dP~V~~Fl~~ 40 (106)
T 2k7r_A 17 FQKRLEQMKEKVMKDQDVQAFLKE 40 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHH
Confidence 445666789999999999987653
No 14
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=21.00 E-value=55 Score=20.53 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=16.8
Q ss_pred CHHHHHHHHHhhCCHHHHHHH
Q psy12097 34 PPEFYDIAEELWKDKGVQACF 54 (74)
Q Consensus 34 ~~~~~~~i~~LW~D~~iq~~~ 54 (74)
|..=+..|.+-|.||..++.+
T Consensus 60 P~~GArVVAKAW~Dp~FK~rL 80 (216)
T 3hht_A 60 PMNGAKVVAKAWTDPAFKQRL 80 (216)
T ss_dssp THHHHHHHHHHHHCHHHHHHH
T ss_pred CccHHHHHHHHhcCHHHHHHH
Confidence 345567899999999998876
Done!