RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12097
(74 letters)
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 62.9 bits (152), Expect = 1e-13
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEY 60
MS + PP L +PENQ RVDYI +V + DFD+PPEFY+ A+ LW+D+GV+AC+ERSNEY
Sbjct: 110 MSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEY 169
Query: 61 QLIDCAKYL 69
QLIDCA+Y
Sbjct: 170 QLIDCAQYF 178
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 54.7 bits (131), Expect = 8e-11
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 6 PPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDC 65
+ +A + E + + LWKD GVQACF RS EYQL D
Sbjct: 91 KIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDS 150
Query: 66 AKYLVS 71
A Y ++
Sbjct: 151 AAYYLN 156
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 51.6 bits (123), Expect = 9e-10
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 10 LEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYL 69
++ N++ + V + + D + LW D G+Q C++R EYQL D KY
Sbjct: 69 YKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYY 128
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 50.9 bits (121), Expect = 2e-09
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 20 DYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKYL 69
+ ++ LW+D G+Q ++R E+QL + KY
Sbjct: 113 RAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYF 162
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 40.5 bits (94), Expect = 8e-06
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 20 DYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQLIDCAKY 68
+ + E LWKD +Q R NE Q+ DC KY
Sbjct: 89 KLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKY 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.46
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 31/76 (40%)
Query: 7 PCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACF-----ERSNEYQ 61
P TL H + H P + IA +L + F E + +
Sbjct: 8 PLTLSHGSLE------------HVLLVPTASFFIASQLQEQ------FNKILPEPTEGFA 49
Query: 62 LID--------CAKYL 69
D K+L
Sbjct: 50 ADDEPTTPAELVGKFL 65
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta
fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2
PDB: 1c3r_A* 1c3s_A*
Length = 375
Score = 26.2 bits (58), Expect = 0.90
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 11 EHPENQSRVDYIHNVASAHDFDYPPEFYDI----AEEL 44
HP RV + A + E EEL
Sbjct: 20 NHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEEL 57
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 25.3 bits (55), Expect = 1.8
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 9 TLEHPENQSRVDYIHNVASAHDFDYPPE 36
Q +D+ + + S H+F+ PE
Sbjct: 101 FTHKSVFQEMLDFPNLILSYHNFEETPE 128
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme,
arginase fold, HDAC8, histon deacetylase, hydroxamate
inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens}
PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A*
2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A*
1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Length = 388
Score = 24.2 bits (53), Expect = 4.3
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 12 HPENQSRVDYIHNVASAHDFDYPPEFYDI----AEEL 44
+ R +H++ A+ EE+
Sbjct: 31 LAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEM 67
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: TLA; 1.75A {Aquifex
aeolicus} PDB: 2ysw_A
Length = 219
Score = 24.1 bits (52), Expect = 5.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 VASAHDFDYPPEFYDIAEEL 44
+ S H+F+ P + I E L
Sbjct: 112 IISYHNFELTPPNWIIREVL 131
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A
{Burkholderia pseudomallei 1710B}
Length = 362
Score = 23.9 bits (52), Expect = 5.5
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 10 LEHPENQSRVDYIHNVASAHDFDY-PPEFYDIAE 42
E R + A A F P+ + IA
Sbjct: 45 RMPQEVPERAARLVAAAFAMGFPVREPDDFGIAP 78
>3izx_B Capsid protein VP1; cytoplasmic polyhedrosis virus, 3D
reconstruction, cryoem, F model; 3.10A {Bombyx mori
cypovirus 1} PDB: 3cnf_A 3iz3_B 3j17_B*
Length = 1333
Score = 24.3 bits (51), Expect = 5.7
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFY 38
+P + PE V Y H + S+ +
Sbjct: 1081 DDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVT 1118
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 23.8 bits (52), Expect = 6.2
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 31 FDYPPEFYDIAEELWKDKGV 50
+ P+ I +++ G+
Sbjct: 89 MEINPDCAAITQQMLNFAGL 108
>3ipj_A PTS system, iiabc component; iiabc component,PSI, structural
genomics, MCSG, structure initiative; 1.20A
{Clostridium difficile}
Length = 95
Score = 23.4 bits (51), Expect = 7.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 42 EELWKDKGVQACFERSNEYQLI 63
+++ K V+ F S +YQ+I
Sbjct: 45 KKVEKVDEVKGVFFTSGQYQII 66
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket,
hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Length = 367
Score = 23.4 bits (51), Expect = 8.1
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 12 HPENQSRVDYIHN 24
HP R+ HN
Sbjct: 22 HPMKPHRIRMTHN 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.424
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,169,116
Number of extensions: 54092
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 18
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)