RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12097
(74 letters)
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 77.6 bits (191), Expect = 4e-21
Identities = 44/71 (61%), Positives = 57/71 (80%)
Query: 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEY 60
MS + PP L +PENQ RVDYI +V + DFD+PPEFY+ A+ LW+D+GV+AC+ERSNEY
Sbjct: 23 MSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEY 82
Query: 61 QLIDCAKYLVS 71
QLIDCA+Y +
Sbjct: 83 QLIDCAQYFLD 93
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 60.3 bits (146), Expect = 2e-14
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEY 60
M + P ++ N++ + V + + D + LW D G+Q C++R EY
Sbjct: 28 MDTLKIPY--KYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREY 85
Query: 61 QLIDCAKYLVS 71
QL D KY ++
Sbjct: 86 QLSDSTKYYLN 96
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 59.9 bits (145), Expect = 3e-14
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEY 60
M ++ + +R ++ A+ F E + + LWKD GVQACF RS EY
Sbjct: 28 MGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREY 86
Query: 61 QLIDCAKYLV 70
QL D A Y +
Sbjct: 87 QLNDSAAYYL 96
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 58.0 bits (140), Expect = 2e-13
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSQVNPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQACFERSNEY 60
M+ +N ++ +R +H + + P E DI + LWKD G+QACF+R++EY
Sbjct: 28 MTTLNIQYGDSARQDDAR-KLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEY 86
Query: 61 QLIDCAKYLVS 71
QL D A Y +S
Sbjct: 87 QLNDSAGYYLS 97
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 53.0 bits (127), Expect = 2e-11
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 10 LEHPENQSRVDYIHNVAS--------AHDFDYPPEFYDIAEELWKDKGVQACFERSNEYQ 61
+NQ D + + + ++ LW+D G+Q ++R E+Q
Sbjct: 35 WGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQ 94
Query: 62 LIDCAKY 68
L + KY
Sbjct: 95 LGESVKY 101
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 49.5 bits (118), Expect = 4e-10
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 10 LEHPENQSRVDYIHNVASAHDFDYPP----EFYDIAEELWKDKGVQACFERSNEYQLIDC 65
+H EN+ ++ + P + LW+D G++ F R +E+QL +
Sbjct: 35 WQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGES 94
Query: 66 AKY 68
KY
Sbjct: 95 VKY 97
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 24.5 bits (52), Expect = 1.3
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 11 EHPENQSRVDYIHNVASAHDFDYPPEFYD 39
HPE+ R+ I + E
Sbjct: 26 RHPEHAGRIQSIWSRLQERGLRSQCECLR 54
>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 320
Score = 24.3 bits (53), Expect = 1.3
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 5 NPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAE 42
+P C + D + A YP + D A
Sbjct: 65 DPHCDV-FQN--ETWDLFVERSKAFSNCYPYDVPDYAS 99
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus
elongatus [TaxId: 32046]}
Length = 743
Score = 24.4 bits (53), Expect = 1.6
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 13 PENQSRVDYIHNVASAHDFD 32
P+ + + +H A AHDFD
Sbjct: 30 PQTTTWIWNLH--ALAHDFD 47
>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus,
different strains [TaxId: 11320]}
Length = 314
Score = 22.8 bits (49), Expect = 5.8
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 5 NPPCTLEHPENQSRVDYIHNVASAHDFDYPPEFYDIAE 42
P C D I D YP +F +
Sbjct: 61 PPQCDQFLEF---SADLIIERREGSDVCYPGKFVNEEA 95
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 22.2 bits (47), Expect = 7.7
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 16 QSRVDYIHNVASAHDFDYPPEFYDIAEELWKDKGVQAC 53
RV I N+ DF+ P + E + + +
Sbjct: 7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG 44
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 22.1 bits (46), Expect = 9.6
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 12 HPENQSRVDYIHNVASAHDFDYPPEFY 38
HP RV + A + E
Sbjct: 20 HPLKIPRVSLLLRFKDAMNLIDEKELI 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.424
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,438
Number of extensions: 11242
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 18
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)