BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12099
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 328 bits (842), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 328 bits (842), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED NRL+E+L+LFKSIWNNR
Sbjct: 207 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 266
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 267 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 326
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 327 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 328 bits (841), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 328 bits (841), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 328 bits (841), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED NRL+E+L+LFKSIWNNR
Sbjct: 207 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 266
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 267 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 326
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 327 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E +NR+ ES LF++I
Sbjct: 199 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 258
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W + SVILFLNK+DLL EK+ S L DYF E+ Q A A+ F
Sbjct: 259 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 304
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
I F+ ++ D Y HFTCA DTENIR VF +D I +++L++Y L+
Sbjct: 305 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 355
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E +NR+ ES LF++I
Sbjct: 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W + SVILFLNK+DLL EK+ S L DYF E+ Q A A+ F
Sbjct: 231 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 276
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
I F+ ++ D Y HFTCA DTENIR VF +D I +++L++Y L+
Sbjct: 277 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E +NR+ ES LF++I
Sbjct: 197 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W + SVILFLNK+DLL EK+ S L DYF E+ Q A A+ F
Sbjct: 257 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
I F+ ++ D Y HFTCA DTENIR VF +D I +++L++Y L+
Sbjct: 303 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 353
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 136 bits (342), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E +NR+ ES LF++I
Sbjct: 191 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 250
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W + SVILFLNK+DLL EK+ S L DYF E+ Q A A+ F
Sbjct: 251 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 296
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
I F+ ++ D Y HFTCA DTENIR VF +D I +++L++Y L+
Sbjct: 297 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 347
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E +NR+ ES LF++I
Sbjct: 197 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W + SVILFLNK+DLL EK+ S L DYF E+ Q A A+ F
Sbjct: 257 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
I F+ ++ D Y HFTCA DTENIR VF +D I +++L++Y L+
Sbjct: 303 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 353
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VT IIF+ A S+Y+MVL ED NR+ ESL LF SI N+R
Sbjct: 168 MFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHR 227
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
+ T S++LFLNK+D+ +EK+K K+ L F ++ P+ ED A +
Sbjct: 228 YFATTSIVLFLNKKDVFSEKIK--KAHLSICFPDYN--------GPNTYED-----AGNY 272
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +FL ++ D K Y H TCA DT+N++ VF+ DII + +L+
Sbjct: 273 IKVQFLELNMRR-DVKE-IYSHMTCATDTQNVKFVFDAVTDIIIKENLK 319
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 200 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICNNK 259
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 260 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAGN-------------Y 304
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +FL ++ D K Y H TCA DT+N++ VF+ DII + +L+
Sbjct: 305 IKVQFLELNMRR-DVKE-IYSHMTCATDTQNVKFVFDAVTDIIIKENLK 351
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 169 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 228
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 229 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAGN-------------Y 273
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +FL ++ D K Y H TCA DT+N++ VF+ DII + +L+
Sbjct: 274 IKVQFLELNMRR-DVKE-IYSHMTCATDTQNVKFVFDAVTDIIIKENLK 320
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 98/169 (57%), Gaps = 18/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
+FDVGGQR ER+KWI CF DVTAIIF A S Y+ VL ED T NR+ ESL LF SI NN+
Sbjct: 178 LFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNK 237
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
+ S+ILFLNK+DL EK+K KS L F E+ T DA +
Sbjct: 238 FFIDTSIILFLNKKDLFGEKIK--KSPLTICFPEYPGSNTYEDAAA-------------Y 282
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F S + + YC H TCA DT NI+ VF+ DII +LR
Sbjct: 283 IQTQF-ESKNRSPNKEIYC--HMTCATDTNNIQVVFDAVTDIIIANNLR 328
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 174 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 233
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K +S L + E+T T +A +
Sbjct: 234 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 278
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L++
Sbjct: 279 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 132 bits (333), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K +S L + E+T T +A +
Sbjct: 257 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L++
Sbjct: 302 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 349
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 174 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 233
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K +S L + E+T T +A +
Sbjct: 234 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 278
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L++
Sbjct: 279 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 167 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 226
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K +S L + E+T T +A +
Sbjct: 227 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 271
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L++
Sbjct: 272 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 319
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 174 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 233
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 234 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 278
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 279 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 325
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 172 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 231
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 232 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 276
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 277 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 323
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 173 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 232
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 233 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 277
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 278 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 324
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 171 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 230
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 231 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 275
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 276 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 322
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 172 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 231
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 232 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 276
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 277 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 323
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 169 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 228
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 229 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 273
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 274 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 320
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 168 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 227
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 228 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 272
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 273 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 319
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 169 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 228
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 229 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 273
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 274 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 320
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 167 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 226
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 227 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 271
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 272 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 318
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 99/168 (58%), Gaps = 17/168 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 200 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 259
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 260 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 304
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 168
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L
Sbjct: 305 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNL 350
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 204 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 263
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 264 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 308
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA D +N++ VF+ D+I + +L+
Sbjct: 309 IQCQFEDLNKRK-DTKEI-YTHFTCATDAKNVQFVFDAVTDVIIKNNLK 355
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 96/163 (58%), Gaps = 17/163 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 166 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 225
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 226 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 270
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDII 163
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I
Sbjct: 271 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVI 311
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 198 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 257
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 258 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N+ VF+ D+I + +L+
Sbjct: 303 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVCFVFDAVTDVIIKNNLK 349
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 129 bits (324), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVG QR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDV GQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 198 MFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 257
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 258 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 303 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 349
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGG R ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 96/163 (58%), Gaps = 17/163 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 167 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 226
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 227 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 271
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDII 163
I+ +F ++ D K Y HFTC+ DT+N++ VF+ D+I
Sbjct: 272 IQCQFEDLNKRK-DTKE-IYTHFTCSTDTKNVQFVFDAVTDVI 312
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 97/168 (57%), Gaps = 17/168 (10%)
Query: 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
FDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR ES LF SI NN+W
Sbjct: 195 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICNNKW 254
Query: 62 LRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI 121
S+ILFLNK+DL EK+K KS L + E+ T +A +I
Sbjct: 255 FTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAGN-------------YI 299
Query: 122 RDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
+ +FL ++ D K Y H TCA DT+N++ VF+ DII + +L+
Sbjct: 300 KVQFLELNXRR-DVKE-IYSHXTCATDTQNVKFVFDAVTDIIIKENLK 345
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KW +CF VTAIIF A S Y+ VL ED NR+ ES+ LF SI NN+
Sbjct: 184 MFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNK 243
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 244 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 288
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 289 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 335
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 102/174 (58%), Gaps = 18/174 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED NRL ESL++F++I NNR
Sbjct: 181 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 240
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR-AKY 119
+S+ILFLNK DLL EKV+ ++DYF EF DP +R +
Sbjct: 241 VFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFE-------------GDPHCLRDVQK 285
Query: 120 FIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
F+ + F + Y HFT A++TENIR VF D +D I +L+Q L
Sbjct: 286 FLVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 337
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 102/174 (58%), Gaps = 18/174 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED NRL ESL++F++I NNR
Sbjct: 205 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR-AKY 119
+S+ILFLNK DLL EKV+ ++DYF EF DP +R +
Sbjct: 265 VFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFE-------------GDPHCLRDVQK 309
Query: 120 FIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
F+ + F + Y HFT A++TENIR VF D +D I +L+Q L
Sbjct: 310 FLVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 361
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 98/169 (57%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDV GQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 198 MFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 257
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 258 CFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I+ +F ++ D K Y HFTCA DT+N++ VF+ D+I + +L+
Sbjct: 303 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 349
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 101/174 (58%), Gaps = 18/174 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGG R ER++W +CF+ VT+I+F+ + S ++ VL ED NRL ESL++F++I NNR
Sbjct: 181 MVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 240
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR-AKY 119
+S+ILFLNK DLL EKV+ ++DYF EF DP +R +
Sbjct: 241 VFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFE-------------GDPHCLRDVQK 285
Query: 120 FIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
F+ + F + Y HFT A++TENIR VF D +D I +L+Q L
Sbjct: 286 FLVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 337
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 116 bits (290), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 17/173 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR +R+KW QCF+ +T+I+F+ + S Y+ VL ED NRL ES+++F++I NN+
Sbjct: 203 MVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNK 262
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
+S+ILFLNK DLL EKVK+ ++ +F +F P ED + F
Sbjct: 263 LFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFK-------GDPHRLEDVQRYLVQCF 313
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
R R + HFT A+DTENIR VF+ +D I + +L+ L
Sbjct: 314 DRKRRNRSKP--------LFHHFTTAIDTENIRFVFHAVKDTILQENLKDIML 358
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 27/178 (15%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
+ DVGGQR ER+ W+ F+DV IFVT+ + Y+ L ED +RL ES+ +FK I N
Sbjct: 165 LIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNE 224
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
+L+ ++FLNK DL EK+ K L F E+T G D V A+Y
Sbjct: 225 FLKGAVKLIFLNKXDLFEEKLT--KVPLNTIFPEYT------------GGDNAVXGAQYI 270
Query: 121 -------IRDEFLRISTASGDG------KHYCYPHFTCAVDTENIRRVFNDCRDIIQR 165
++ E IS A G Y + T A D NI+RVF D+I +
Sbjct: 271 QQLFTGKLQTEEXNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFXLAVDVIXK 328
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
+FDVGGQR+ERRKWI F VTA+IF A S Y+ L ED +NR+ E+ +LF +
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
S +LFLNK D+ +KV + ++F+++ P+ + E K F
Sbjct: 247 CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY----QPVSSGKQEIEHAYEFVKKKF 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
+E +TA + T A+D + +++ F + ++R +L + LL
Sbjct: 303 --EELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354
>pdb|2NZZ|A Chain A, Nmr Structure Analysis Of The Penetratin Conjugated Gas
(374-394) Peptide
pdb|2O00|A Chain A, Nmr Structure Analysis Of The Penetratin Conjugated Gas
(374-394) Peptide
Length = 37
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 153 RRVFNDCRDIIQRMHLRQYELL 174
+RVFND RDIIQRMHLRQYELL
Sbjct: 16 KRVFNDARDIIQRMHLRQYELL 37
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 370 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 419
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 420 EMRDAIILIFANKQDL 435
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 97
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 98 EMRDAIILIFANKQDL 113
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 97
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 98 EMRDAIILIFANKQDL 113
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 110
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 111 EMRDAIILIFANKQDL 126
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 109
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 110 EMRDAIILIFANKQDL 125
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 97
Query: 61 WLRTISVILFLNKQDL 76
R +++F NKQDL
Sbjct: 98 EXRDAIILIFANKQDL 113
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGG R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 51 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 100
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 101 EMRDAIILIFANKQDL 116
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGG R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 50 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 99
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 100 EMRDAIILIFANKQDL 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGG R W + +IFV C+ ++R+ E+ I N+R
Sbjct: 61 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 110
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 111 EMRDAIILIFANKQDL 126
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + + R++ES D + +
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKMLQED 126
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 127 ELRDAVLLVFANKQDM 142
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + ++R+ E+ D + N
Sbjct: 68 VWDVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNED 117
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 118 ELRDAVLLVFANKQDL 133
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
FD+GG RR W + I+F+ C+ + RL ES + S+ +
Sbjct: 71 FDLGGHIQARRVWKNYLPAINGIVFLVDCADH----------ERLLESKEELDSLMTDET 120
Query: 62 LRTISVILFLNKQD 75
+ + +++ NK D
Sbjct: 121 IANVPILILGNKID 134
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + + +IFV + ++R+ E+ ++ + + N
Sbjct: 48 VWDVGGQDRIRSLWRHYYRNTEGVIFVV----------DSNDRSRIGEAREVMQRMLNED 97
Query: 61 WLRTISVILFLNKQDL 76
LR + ++F NKQDL
Sbjct: 98 ELRNAAWLVFANKQDL 113
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + + +IFV + ++R+ E+ ++ + + N
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVV----------DSNDRSRIGEAREVMQRMLNED 114
Query: 61 WLRTISVILFLNKQDL 76
LR + ++F NKQDL
Sbjct: 115 ELRNAAWLVFANKQDL 130
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
FD+GG RR W + I+F+ C+ + RL ES + S+ +
Sbjct: 74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADH----------ERLLESKEELDSLMTDET 123
Query: 62 LRTISVILFLNKQD 75
+ + +++ NK D
Sbjct: 124 IANVPILILGNKID 137
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
FD+GG RR W + I+F+ C+ + RL ES + S+ +
Sbjct: 65 FDLGGGIQARRVWKNYLPAINGIVFLVDCADH----------ERLLESKEELDSLMTDET 114
Query: 62 LRTISVILFLNKQD 75
+ + +++ NK D
Sbjct: 115 IANVPILILGNKID 128
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
FD+GG RR W + I+F+ C+ + +RL ES ++ +
Sbjct: 84 FDLGGHEQARRVWKNYLPAINGIVFLVDCADH----------SRLVESKVELNALMTDET 133
Query: 62 LRTISVILFLNKQD 75
+ + +++ NK D
Sbjct: 134 ISNVPILILGNKID 147
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + + +IFV + ++R+ E+ ++ + + N
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVI----------DSNDRSRIGEAREVMQRMLNED 114
Query: 61 WLRTISVILFLNKQDL 76
LR ++F NKQDL
Sbjct: 115 ELRNAVWLVFANKQDL 130
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + + AIIFV + ++R+ E+ + + N
Sbjct: 65 VWDVGGQDKIRPLWRHYYQNTQAIIFVVDSND----------RDRIGEAREELMKMLNED 114
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NK DL
Sbjct: 115 EMRNAILLVFANKHDL 130
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + + R++E D + +
Sbjct: 65 VWDVGGQDRIRPLWKHYFQNTQGLIFVV----------DSNDRERIQEVADELQKMLLVD 114
Query: 61 WLRTISVILFLNKQDL 76
LR ++LF NKQDL
Sbjct: 115 ELRDAVLLLFANKQDL 130
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + V N RE +L + + +
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-------NEARE--ELMRMLAEDE 263
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 264 -LRDAVLLVFANKQDL 278
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + + +IFV + ++R+ E+ ++ + + N
Sbjct: 65 VWDVGGQDRIRSLWRHYYCNTEGVIFVV----------DSNDRSRIGEAREVMQRMLNED 114
Query: 61 WLRTISVILFLNKQDL 76
L + ++F NKQDL
Sbjct: 115 ELCNAAWLVFANKQDL 130
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
FD+GG RR W F +V I+F+ + DP R E+ +++N
Sbjct: 50 FDLGGHIQARRLWKDYFPEVNGIVFLVDAA--------DP--ERFDEARVELDALFNIAE 99
Query: 62 LRTISVILFLNKQD 75
L+ + ++ NK D
Sbjct: 100 LKDVPFVILGNKID 113
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M+D+GGQ R W +++ II V + + RL + + + +
Sbjct: 64 MWDIGGQESLRSSWNTYYSNTEFIILVV----------DSIDRERLAITKEELYRMLAHE 113
Query: 61 WLRTISVILFLNKQDL 76
LR +V++F NKQD+
Sbjct: 114 DLRKAAVLIFANKQDM 129
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + V N RE +L + + +
Sbjct: 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-------NEARE--ELMRMLAEDE 98
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 99 -LRDAVLLVFANKQDL 113
>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
Length = 627
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDL--FKSIWNNRWLRTISVILFLNKQDLLA 78
V A F+ +CS+ L +D N+L + D+ +KS W R+ R I+ + ++ QD+ A
Sbjct: 506 VVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPNYKS-WVERYYRDIAKMASISDQDMDA 564
Query: 79 EKVKAGKSRLEDY 91
V+ + D+
Sbjct: 565 YLVEQSRLHANDF 577
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + V N RE +L + + +
Sbjct: 64 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-------NEARE--ELMRMLAEDE 114
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 115 -LRDAVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + + R+ E+ + +
Sbjct: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAED 114
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 115 ELRDAVLLVFANKQDL 130
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W +++ +IFV + + R+ ++ + + N
Sbjct: 65 VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSND----------RERIDDAREELHRMINEE 114
Query: 61 WLRTISVILFLNKQDL 76
L+ +++F NKQDL
Sbjct: 115 ELKDAIILVFANKQDL 130
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ+ R W F +I+V + + R+++ +S+
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLLVEE 115
Query: 61 WLRTISVILFLNKQDL 76
L ++++F NKQDL
Sbjct: 116 RLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ+ R W F +I+V + + R+++ +S+
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLLVEE 115
Query: 61 WLRTISVILFLNKQDL 76
L ++++F NKQDL
Sbjct: 116 RLAGATLLIFANKQDL 131
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ+ R W F +I+V + + R+++ +S+
Sbjct: 64 IWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLLVEE 113
Query: 61 WLRTISVILFLNKQDL 76
L ++++F NKQDL
Sbjct: 114 RLAGATLLIFANKQDL 129
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQ R W F+D A+I+V + + R ++ L LD +
Sbjct: 70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD---RMGVAKHELYALLDEDE------ 120
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 121 -LRKSLLLIFANKQDL 135
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQR R W F + +I+V + + R E+ +
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVI----------DSADRKRFEETGQELTELLEEE 113
Query: 61 WLRTISVILFLNKQDLL 77
L + V++F NKQDLL
Sbjct: 114 KLSCVPVLIFANKQDLL 130
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQR R W F + +I+V + + R E+ +
Sbjct: 52 VWDIGGQRKIRPYWRSYFENTDILIYVI----------DSADRKRFEETGQELTELLEEE 101
Query: 61 WLRTISVILFLNKQDLL 77
L + V++F NKQDLL
Sbjct: 102 KLSCVPVLIFANKQDLL 118
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQR R W F + +I+V + + R E+ +
Sbjct: 65 VWDIGGQRKIRPYWRSYFENTDILIYVI----------DSADRKRFEETGQELTELLEEE 114
Query: 61 WLRTISVILFLNKQDLL 77
L + V++F NKQDLL
Sbjct: 115 KLSCVPVLIFANKQDLL 131
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 115 IRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE 150
I+AKY +++F TA + K Y PHF+ +++ E
Sbjct: 183 IKAKY--KEDFSTTGTAYFEVKEYVLPHFSVSIEPE 216
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQ R W + V+AI+++ + Q ++ S + ++ +
Sbjct: 71 LWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKP 120
Query: 61 WLRTISVILFLNKQDL 76
L+ I V++ NK+DL
Sbjct: 121 QLQGIPVLVLGNKRDL 136
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
FD+GG RR W F +V I+F+ + DP R E+ +++N
Sbjct: 72 FDLGGHIQARRLWKDYFPEVNGIVFLVDAA--------DP--ERFDEARVELDALFNIAE 121
Query: 62 LRTISVILFLNKQD 75
L+ + ++ NK D
Sbjct: 122 LKDVPFVILGNKID 135
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQ R W + V+AI+++ + + + ++N L LD +
Sbjct: 80 LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI---EASKNELHNLLDKPQ------ 130
Query: 61 WLRTISVILFLNKQDL 76
L+ I V++ NK+DL
Sbjct: 131 -LQGIPVLVLGNKRDL 145
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 115 IRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE 150
I+AKY +++F TA + K Y PHF+ +++ E
Sbjct: 201 IKAKY--KEDFSTTGTAYFEVKEYVLPHFSVSIEPE 234
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 115 IRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE 150
I+AKY +++F TA + K Y PHF+ +++ E
Sbjct: 201 IKAKY--KEDFSTTGTAYFEVKEYVLPHFSVSIEPE 234
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ+ R W F +I+V + + R ++ +S+
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRXQDCQRELQSLLVEE 115
Query: 61 WLRTISVILFLNKQDL 76
L ++++F NKQDL
Sbjct: 116 RLAGATLLIFANKQDL 131
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFV----------TACSSYNMVLREDPTQN 44
++D+GGQ R W + D A+IFV TA +++L+E+ Q+
Sbjct: 66 VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD 119
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M+D+GGQ R W + + +I V + RE + R +L+K + +
Sbjct: 70 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-----RERISVTR----EELYKMLAHED 120
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 121 -LRKAGLLIFANKQDV 135
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M+D+GGQ R W + + +I V + RE + R +L+K + +
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-----RERISVTR----EELYKMLAHED 119
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 120 -LRKAGLLIFANKQDV 134
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSY-NMVLREDPTQNRLRESLDLFKSIWNN 59
+FD+GG + R W ++++ A+IFV S + + + + Q L+ D+ + +
Sbjct: 67 VFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHE-DIRRELPGG 125
Query: 60 RWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKY 119
+ + F NK D K A E LD T G+ P VI A
Sbjct: 126 ---GRVPFLFFANKMDAAGAKTAA----------ELVEI---LDLTTLMGDHPFVIFASN 169
Query: 120 FIR 122
++
Sbjct: 170 GLK 172
>pdb|1F9O|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum With The Thiooligosaccharide Inhibitor
Pips- Ig3
pdb|1FAE|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiose
pdb|1FBO|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiitol
pdb|1G9G|A Chain A, Xtal-Structure Of The Free Native Cellulase Cel48f
pdb|1FCE|A Chain A, Processive Endocellulase Celf Of Clostridium
Cellulolyticum
Length = 629
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 92 FQEFTRYQTPLDATPDPGEDPI 113
FQ+ ++Y +PLD + G DPI
Sbjct: 115 FQDPSKYPSPLDTSQPVGRDPI 136
>pdb|1G9J|A Chain A, X-Tal Structure Of The Mutant E44q Of The Cellulase Cel48f
In Complex With A Thiooligosaccharide
Length = 629
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 92 FQEFTRYQTPLDATPDPGEDPI 113
FQ+ ++Y +PLD + G DPI
Sbjct: 115 FQDPSKYPSPLDTSQPVGRDPI 136
>pdb|1F9D|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellotetraose
pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellohexaose
pdb|2QNO|A Chain A, Crystal Structure Of The Mutant E55q Of The Cellulase
Cel48f In Complex With A Thio-Oligosaccharide
Length = 629
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 92 FQEFTRYQTPLDATPDPGEDPI 113
FQ+ ++Y +PLD + G DPI
Sbjct: 115 FQDPSKYPSPLDTSQPVGRDPI 136
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M+D+GGQ R W + + +I V + RE + R +L+K + +
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-----RERISVTR----EELYKMLAHED 114
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 115 -LRKAGLLIFANKQDV 129
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M+D+GGQ R W + + +I V + RE + R +L+K + +
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-----RERISVTR----EELYKMLAHED 114
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 115 -LRKAGLLIFANKQDV 129
>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
Length = 950
Score = 27.3 bits (59), Expect = 4.4, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 103 DATPDPGEDPIVIRAKYFIRDEFL 126
D T D D IV R KY DEFL
Sbjct: 101 DLTVDEARDEIVGRIKYIFSDEFL 124
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGG R W F + +IFV + V N RE +L + + +
Sbjct: 50 VWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERV-------NEARE--ELMRMLAEDE 100
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 101 -LRDAVLLVFANKQDL 115
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQ R W + V AI+++ + + + ++N L LD +
Sbjct: 71 IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI---EASRNELHNLLDKPQ------ 121
Query: 61 WLRTISVILFLNKQDL 76
L+ I V++ NK+DL
Sbjct: 122 -LQGIPVLVLGNKRDL 136
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVT-ACSSYNMVLREDPTQNRLRESLDLFKSIWNN 59
++D+GGQ R W +++ A+I+V +C ++R+ S ++
Sbjct: 50 VWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCD-----------RDRIGISKSELVAMLEE 98
Query: 60 RWLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 99 EELRKAILVVFANKQDM 115
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSS-YNMVLREDPTQNRLRESLDLFKSIWNN 59
+FD+ GQ R W + + AIIFV S MV+ +E LD + +
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA--------KEELDTLLNHPDI 122
Query: 60 RWLRTISVILFLNKQDL 76
+ R I ++ F NK DL
Sbjct: 123 KH-RRIPILFFANKMDL 138
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDL--FKSIWNNRWLRTISVILFLNKQDLLA 78
V A F+ +CS+ L +D N+L + D+ +KS W R+ I+ + ++ QD+ A
Sbjct: 505 VVAQTFMDSCSTSEHKLGKDSPSNKLLYAKDIPNYKS-WVERYYADIAKMPAISDQDMSA 563
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GG R R W F + +I+V + + R E+ +
Sbjct: 52 VWDIGGLRKIRPYWRSYFENTDILIYVI----------DSADRKRFEETGQELTELLEEE 101
Query: 61 WLRTISVILFLNKQDLL 77
L + V++F NKQDLL
Sbjct: 102 KLSCVPVLIFANKQDLL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,419,342
Number of Sequences: 62578
Number of extensions: 210681
Number of successful extensions: 910
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 108
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)