Query psy12099
Match_columns 174
No_of_seqs 189 out of 1399
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:42:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082|consensus 100.0 3.4E-41 7.4E-46 271.1 14.4 156 1-174 199-354 (354)
2 KOG0099|consensus 100.0 1.1E-38 2.4E-43 245.0 12.6 174 1-174 206-379 (379)
3 KOG0085|consensus 100.0 6.5E-38 1.4E-42 237.5 5.3 157 1-174 203-359 (359)
4 cd00066 G-alpha G protein alph 100.0 3.8E-36 8.2E-41 242.9 14.4 153 1-170 165-317 (317)
5 smart00275 G_alpha G protein a 100.0 6E-36 1.3E-40 243.8 15.2 155 1-172 188-342 (342)
6 PF00503 G-alpha: G-protein al 100.0 8.1E-34 1.8E-38 235.2 13.5 149 1-163 240-389 (389)
7 KOG0084|consensus 99.9 5.8E-27 1.3E-31 173.2 10.1 113 1-167 62-175 (205)
8 KOG0092|consensus 99.9 1.7E-26 3.7E-31 170.1 6.6 113 1-167 58-170 (200)
9 KOG0078|consensus 99.9 1.2E-24 2.6E-29 162.7 8.7 112 1-166 65-176 (207)
10 KOG0086|consensus 99.9 4.8E-24 1E-28 152.2 9.3 112 1-166 62-173 (214)
11 KOG0087|consensus 99.9 3.9E-24 8.4E-29 159.8 8.5 115 1-169 67-181 (222)
12 KOG0080|consensus 99.9 1.4E-23 3.1E-28 150.7 6.0 112 1-165 64-175 (209)
13 KOG0094|consensus 99.9 4.5E-23 9.8E-28 152.4 8.8 113 1-166 75-187 (221)
14 KOG0070|consensus 99.9 4.9E-23 1.1E-27 151.1 8.8 116 1-166 65-180 (181)
15 KOG0098|consensus 99.9 5E-23 1.1E-27 151.1 8.5 113 1-167 59-171 (216)
16 cd04120 Rab12 Rab12 subfamily. 99.9 2.1E-22 4.6E-27 153.3 10.1 113 1-166 53-165 (202)
17 cd04121 Rab40 Rab40 subfamily. 99.9 2.5E-22 5.3E-27 151.5 10.1 111 1-166 59-169 (189)
18 KOG0091|consensus 99.9 2.3E-22 4.9E-27 145.0 9.0 116 1-169 62-178 (213)
19 PLN00223 ADP-ribosylation fact 99.9 3.3E-22 7.1E-27 149.7 10.2 116 1-166 65-180 (181)
20 KOG0394|consensus 99.9 1.2E-22 2.6E-27 148.8 7.2 117 1-167 62-181 (210)
21 KOG0071|consensus 99.9 3.6E-22 7.9E-27 140.5 8.6 112 1-162 65-176 (180)
22 KOG0088|consensus 99.9 2.9E-22 6.3E-27 143.8 7.7 113 1-167 66-178 (218)
23 KOG0079|consensus 99.9 3.2E-22 7E-27 142.0 7.5 114 1-169 61-174 (198)
24 KOG0093|consensus 99.9 3.6E-22 7.8E-27 141.6 7.5 119 1-173 74-192 (193)
25 smart00177 ARF ARF-like small 99.9 1.5E-21 3.2E-26 145.2 9.5 113 1-163 61-173 (175)
26 PF00025 Arf: ADP-ribosylation 99.9 5.9E-21 1.3E-25 142.2 11.3 114 1-163 62-175 (175)
27 cd01875 RhoG RhoG subfamily. 99.9 3.2E-21 7E-26 145.4 9.7 124 1-166 55-179 (191)
28 cd04149 Arf6 Arf6 subfamily. 99.9 3E-21 6.5E-26 142.7 9.4 111 1-161 57-167 (168)
29 cd04133 Rop_like Rop subfamily 99.9 2.7E-21 5.9E-26 144.2 8.6 119 1-164 53-173 (176)
30 PTZ00099 rab6; Provisional 99.8 3.9E-21 8.4E-26 143.4 9.2 111 1-165 33-143 (176)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 6.1E-21 1.3E-25 141.6 9.7 113 1-166 54-166 (172)
32 smart00176 RAN Ran (Ras-relate 99.8 5.8E-21 1.3E-25 145.2 9.6 109 1-166 48-156 (200)
33 cd04150 Arf1_5_like Arf1-Arf5- 99.8 6.2E-21 1.4E-25 139.7 9.3 111 1-161 48-158 (159)
34 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 6.5E-21 1.4E-25 142.9 8.9 122 1-165 57-181 (182)
35 PTZ00133 ADP-ribosylation fact 99.8 1.2E-20 2.7E-25 141.2 10.4 116 1-166 65-180 (182)
36 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1E-20 2.2E-25 146.8 9.9 126 1-169 65-193 (232)
37 KOG0081|consensus 99.8 8.4E-21 1.8E-25 136.4 8.6 113 1-166 71-183 (219)
38 cd04127 Rab27A Rab27a subfamil 99.8 2.6E-20 5.6E-25 138.3 9.9 113 1-166 67-179 (180)
39 cd04158 ARD1 ARD1 subfamily. 99.8 3E-20 6.4E-25 137.2 10.1 116 1-165 47-162 (169)
40 KOG0095|consensus 99.8 1E-20 2.2E-25 134.8 6.7 113 1-167 60-172 (213)
41 cd04122 Rab14 Rab14 subfamily. 99.8 3.2E-20 6.9E-25 136.3 9.6 111 1-165 55-165 (166)
42 cd04126 Rab20 Rab20 subfamily. 99.8 3.8E-20 8.2E-25 142.6 10.2 143 1-167 48-193 (220)
43 KOG0083|consensus 99.8 7.5E-21 1.6E-25 133.1 5.2 113 1-167 51-163 (192)
44 KOG0097|consensus 99.8 3.5E-20 7.6E-25 131.0 8.4 112 1-166 64-175 (215)
45 cd04131 Rnd Rnd subfamily. Th 99.8 3.7E-20 7.9E-25 138.3 8.9 121 1-164 53-176 (178)
46 cd04175 Rap1 Rap1 subgroup. T 99.8 4.7E-20 1E-24 135.0 8.9 111 1-164 53-163 (164)
47 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 7.6E-20 1.6E-24 138.7 10.0 114 1-166 54-170 (201)
48 KOG0073|consensus 99.8 1.4E-19 3E-24 130.5 10.3 115 1-167 64-181 (185)
49 cd04136 Rap_like Rap-like subf 99.8 6.1E-20 1.3E-24 133.7 8.7 110 1-163 53-162 (163)
50 PLN03071 GTP-binding nuclear p 99.8 1.1E-19 2.4E-24 139.9 9.2 109 1-166 66-174 (219)
51 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.5E-19 3.2E-24 134.6 9.0 120 1-162 53-173 (175)
52 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.2E-19 4.7E-24 132.5 9.6 114 1-161 47-166 (167)
53 cd04144 Ras2 Ras2 subfamily. 99.8 2.5E-19 5.4E-24 134.8 9.7 114 1-167 51-166 (190)
54 cd04176 Rap2 Rap2 subgroup. T 99.8 2E-19 4.3E-24 131.4 8.7 110 1-163 53-162 (163)
55 cd04138 H_N_K_Ras_like H-Ras/N 99.8 2.6E-19 5.7E-24 129.9 9.2 109 1-163 53-161 (162)
56 PTZ00369 Ras-like protein; Pro 99.8 3.7E-19 8E-24 133.8 10.0 113 1-166 57-169 (189)
57 cd04154 Arl2 Arl2 subfamily. 99.8 3.5E-19 7.5E-24 131.8 9.5 111 1-161 62-172 (173)
58 cd04109 Rab28 Rab28 subfamily. 99.8 3.4E-19 7.4E-24 136.7 9.5 114 1-167 54-169 (215)
59 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 4.5E-19 9.7E-24 130.5 9.3 67 1-79 48-114 (164)
60 cd01871 Rac1_like Rac1-like su 99.8 3.5E-19 7.5E-24 132.4 8.5 120 1-162 53-173 (174)
61 cd04128 Spg1 Spg1p. Spg1p (se 99.8 6.9E-19 1.5E-23 131.8 10.1 115 1-165 53-167 (182)
62 cd04111 Rab39 Rab39 subfamily. 99.8 5.6E-19 1.2E-23 135.3 9.8 113 1-166 56-168 (211)
63 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1E-18 2.3E-23 130.7 10.9 117 1-166 56-172 (183)
64 cd00877 Ran Ran (Ras-related n 99.8 6E-19 1.3E-23 130.0 9.3 108 1-165 53-160 (166)
65 cd04134 Rho3 Rho3 subfamily. 99.8 5E-19 1.1E-23 133.1 9.0 124 1-166 52-176 (189)
66 cd01865 Rab3 Rab3 subfamily. 99.8 6.9E-19 1.5E-23 129.2 9.4 111 1-165 54-164 (165)
67 cd04157 Arl6 Arl6 subfamily. 99.8 7.7E-19 1.7E-23 127.8 9.2 111 1-161 49-161 (162)
68 cd04117 Rab15 Rab15 subfamily. 99.8 7.6E-19 1.6E-23 128.7 8.9 108 1-162 53-160 (161)
69 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 9.1E-19 2E-23 135.1 9.6 125 1-166 53-178 (222)
70 cd04116 Rab9 Rab9 subfamily. 99.8 7.3E-19 1.6E-23 129.4 8.6 109 1-162 58-169 (170)
71 cd04110 Rab35 Rab35 subfamily. 99.8 1.5E-18 3.2E-23 131.6 10.1 113 1-168 59-171 (199)
72 KOG0075|consensus 99.8 1.7E-18 3.6E-23 123.0 8.9 113 1-163 69-181 (186)
73 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.1E-18 4.5E-23 126.5 9.7 111 1-165 55-165 (166)
74 cd04151 Arl1 Arl1 subfamily. 99.8 1.8E-18 3.9E-23 126.0 9.0 111 1-161 47-157 (158)
75 cd01867 Rab8_Rab10_Rab13_like 99.8 2.3E-18 5E-23 126.6 9.6 111 1-165 56-166 (167)
76 cd01873 RhoBTB RhoBTB subfamil 99.8 1.2E-18 2.6E-23 132.0 7.9 124 1-162 70-194 (195)
77 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.9E-18 6.2E-23 124.8 9.6 112 1-161 48-159 (160)
78 smart00173 RAS Ras subfamily o 99.8 2.4E-18 5.3E-23 125.6 9.2 111 1-164 52-162 (164)
79 cd04132 Rho4_like Rho4-like su 99.8 3.1E-18 6.6E-23 128.1 9.9 117 1-168 53-171 (187)
80 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.5E-18 5.3E-23 125.4 9.1 110 1-163 54-163 (164)
81 cd04119 RJL RJL (RabJ-Like) su 99.8 2.3E-18 5E-23 125.6 8.8 111 1-164 53-167 (168)
82 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.8E-18 6.2E-23 127.3 9.2 111 1-161 63-173 (174)
83 cd04115 Rab33B_Rab33A Rab33B/R 99.8 3.7E-18 8E-23 126.0 9.6 110 1-163 55-168 (170)
84 KOG0076|consensus 99.8 6.7E-19 1.4E-23 128.1 5.4 117 1-166 73-189 (197)
85 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 4.5E-18 9.8E-23 125.9 9.8 113 1-164 53-165 (170)
86 smart00174 RHO Rho (Ras homolo 99.8 3.3E-18 7.1E-23 126.2 9.0 123 1-165 50-173 (174)
87 cd04112 Rab26 Rab26 subfamily. 99.8 4.9E-18 1.1E-22 127.8 10.0 115 1-169 54-168 (191)
88 cd04124 RabL2 RabL2 subfamily. 99.8 9.5E-18 2.1E-22 122.8 10.3 108 1-166 53-160 (161)
89 cd04140 ARHI_like ARHI subfami 99.7 5.1E-18 1.1E-22 124.5 8.8 108 1-161 53-162 (165)
90 cd04103 Centaurin_gamma Centau 99.7 3.5E-18 7.5E-23 125.3 7.8 107 1-162 51-157 (158)
91 PF00071 Ras: Ras family; Int 99.7 5.7E-18 1.2E-22 123.4 8.9 110 1-164 52-161 (162)
92 cd00879 Sar1 Sar1 subfamily. 99.7 6.7E-18 1.5E-22 126.5 9.5 123 1-162 67-189 (190)
93 smart00178 SAR Sar1p-like memb 99.7 8.1E-18 1.8E-22 126.0 9.9 119 1-162 65-183 (184)
94 cd01866 Rab2 Rab2 subfamily. 99.7 9E-18 2E-22 123.7 9.7 111 1-165 57-167 (168)
95 PLN03110 Rab GTPase; Provision 99.7 1.3E-17 2.8E-22 128.1 10.1 112 1-166 65-176 (216)
96 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.1E-17 2.4E-22 122.5 8.9 113 1-161 54-166 (167)
97 cd04125 RabA_like RabA-like su 99.7 1.7E-17 3.6E-22 124.4 10.1 112 1-166 53-164 (188)
98 KOG0072|consensus 99.7 7.6E-18 1.6E-22 119.3 7.5 116 1-166 66-181 (182)
99 cd04177 RSR1 RSR1 subgroup. R 99.7 1.6E-17 3.4E-22 122.2 9.2 112 1-164 53-164 (168)
100 cd04143 Rhes_like Rhes_like su 99.7 2.7E-17 5.8E-22 128.9 10.9 111 1-163 52-170 (247)
101 cd01868 Rab11_like Rab11-like. 99.7 1.7E-17 3.8E-22 121.3 9.2 109 1-163 56-164 (165)
102 PLN03108 Rab family protein; P 99.7 3E-17 6.4E-22 125.6 10.2 113 1-167 59-171 (210)
103 cd01864 Rab19 Rab19 subfamily. 99.7 3.6E-17 7.8E-22 119.8 10.3 109 1-162 56-164 (165)
104 cd04106 Rab23_lke Rab23-like s 99.7 2.3E-17 4.9E-22 120.1 8.8 107 1-162 55-161 (162)
105 cd04113 Rab4 Rab4 subfamily. 99.7 2.4E-17 5.2E-22 120.1 8.7 109 1-163 53-161 (161)
106 PLN03118 Rab family protein; P 99.7 4E-17 8.7E-22 124.7 10.1 113 1-166 66-179 (211)
107 cd01860 Rab5_related Rab5-rela 99.7 4E-17 8.6E-22 119.0 9.3 109 1-163 54-162 (163)
108 cd04118 Rab24 Rab24 subfamily. 99.7 5.7E-17 1.2E-21 121.8 9.7 115 1-166 54-168 (193)
109 cd04101 RabL4 RabL4 (Rab-like4 99.7 5.7E-17 1.2E-21 118.3 8.9 108 1-163 56-163 (164)
110 cd04135 Tc10 TC10 subfamily. 99.7 9.7E-17 2.1E-21 118.3 10.1 121 1-163 52-173 (174)
111 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.2E-16 2.6E-21 116.0 9.7 111 1-161 47-157 (158)
112 cd01863 Rab18 Rab18 subfamily. 99.7 8.1E-17 1.7E-21 117.2 8.8 108 1-162 53-160 (161)
113 cd04146 RERG_RasL11_like RERG/ 99.7 1.3E-16 2.8E-21 116.9 9.8 111 1-164 51-164 (165)
114 cd04130 Wrch_1 Wrch-1 subfamil 99.7 7.6E-17 1.6E-21 119.2 8.3 118 1-160 52-170 (173)
115 cd04139 RalA_RalB RalA/RalB su 99.7 1.7E-16 3.7E-21 115.4 9.4 112 1-165 52-163 (164)
116 cd01862 Rab7 Rab7 subfamily. 99.7 1.8E-16 3.9E-21 116.3 9.5 114 1-166 53-169 (172)
117 cd01861 Rab6 Rab6 subfamily. 99.7 1.2E-16 2.6E-21 116.2 8.5 108 1-162 53-160 (161)
118 smart00175 RAB Rab subfamily o 99.7 1.8E-16 4E-21 115.3 9.4 111 1-165 53-163 (164)
119 cd04123 Rab21 Rab21 subfamily. 99.7 1.4E-16 2.9E-21 115.6 8.5 109 1-163 53-161 (162)
120 KOG0074|consensus 99.7 3.1E-17 6.8E-22 115.9 4.7 111 1-161 66-176 (185)
121 cd01892 Miro2 Miro2 subfamily. 99.7 1.5E-16 3.2E-21 117.6 8.3 110 1-165 58-167 (169)
122 cd01893 Miro1 Miro1 subfamily. 99.7 3.8E-16 8.2E-21 114.7 10.2 114 1-165 51-165 (166)
123 cd04142 RRP22 RRP22 subfamily. 99.7 5E-16 1.1E-20 117.9 10.6 114 1-166 53-176 (198)
124 cd04147 Ras_dva Ras-dva subfam 99.7 4.7E-16 1E-20 117.7 9.3 113 1-164 51-163 (198)
125 KOG0395|consensus 99.7 6.9E-16 1.5E-20 116.9 10.1 112 1-165 55-166 (196)
126 cd04137 RheB Rheb (Ras Homolog 99.7 6.8E-16 1.5E-20 114.6 9.7 114 1-167 53-166 (180)
127 cd04148 RGK RGK subfamily. Th 99.7 6.8E-16 1.5E-20 119.0 9.5 110 1-165 54-164 (221)
128 cd04159 Arl10_like Arl10-like 99.6 1.1E-15 2.4E-20 109.9 9.6 111 1-161 48-158 (159)
129 cd01870 RhoA_like RhoA-like su 99.6 2.1E-15 4.6E-20 111.2 10.3 121 1-163 53-174 (175)
130 cd04114 Rab30 Rab30 subfamily. 99.6 1.9E-15 4.1E-20 110.8 9.0 109 1-163 60-168 (169)
131 cd04155 Arl3 Arl3 subfamily. 99.6 2.4E-15 5.2E-20 110.7 9.3 111 1-161 62-172 (173)
132 cd04129 Rho2 Rho2 subfamily. 99.6 2.1E-15 4.5E-20 113.1 8.4 127 1-171 53-180 (187)
133 cd00876 Ras Ras family. The R 99.6 2.8E-15 6.1E-20 108.4 8.4 110 1-163 51-160 (160)
134 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.4E-15 5.2E-20 114.5 7.3 70 1-80 58-145 (202)
135 KOG0393|consensus 99.6 5.6E-15 1.2E-19 110.9 8.7 124 1-166 57-181 (198)
136 PTZ00132 GTP-binding nuclear p 99.6 7.4E-15 1.6E-19 112.4 9.5 66 1-78 62-127 (215)
137 KOG4252|consensus 99.6 1.2E-14 2.7E-19 106.6 9.5 112 1-167 73-184 (246)
138 cd00154 Rab Rab family. Rab G 99.6 7.8E-15 1.7E-19 105.3 8.4 106 1-160 53-158 (159)
139 PLN00023 GTP-binding protein; 99.6 6.4E-15 1.4E-19 118.6 6.9 69 1-79 87-166 (334)
140 cd01890 LepA LepA subfamily. 99.5 2.5E-14 5.4E-19 105.8 8.8 106 1-163 71-176 (179)
141 cd00157 Rho Rho (Ras homology) 99.5 3.6E-14 7.9E-19 103.9 8.3 118 1-161 52-170 (171)
142 COG1100 GTPase SAR1 and relate 99.5 1.1E-13 2.5E-18 105.6 9.7 128 1-166 58-187 (219)
143 cd04171 SelB SelB subfamily. 99.4 5E-13 1.1E-17 97.0 8.7 109 1-161 55-163 (164)
144 KOG4423|consensus 99.4 1.7E-13 3.7E-18 101.1 5.2 116 1-167 79-197 (229)
145 cd01898 Obg Obg subfamily. Th 99.4 9.6E-13 2.1E-17 96.3 7.4 109 1-162 52-169 (170)
146 cd01897 NOG NOG1 is a nucleola 99.4 1.8E-12 4E-17 94.8 8.4 106 1-164 51-168 (168)
147 TIGR02528 EutP ethanolamine ut 99.4 8.1E-13 1.8E-17 94.3 5.0 98 1-160 39-141 (142)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 1E-11 2.3E-16 90.6 10.6 112 1-163 54-165 (168)
149 cd01891 TypA_BipA TypA (tyrosi 99.3 1.6E-12 3.6E-17 97.9 5.4 96 1-111 69-171 (194)
150 cd00882 Ras_like_GTPase Ras-li 99.3 9E-12 2E-16 87.7 8.3 108 1-160 49-156 (157)
151 PRK12299 obgE GTPase CgtA; Rev 99.3 1.1E-11 2.3E-16 101.2 9.7 112 1-165 210-329 (335)
152 cd00881 GTP_translation_factor 99.3 8.9E-12 1.9E-16 92.4 8.5 120 1-163 66-186 (189)
153 KOG0096|consensus 99.3 1.1E-12 2.4E-17 97.0 3.5 107 1-164 63-169 (216)
154 PRK04213 GTP-binding protein; 99.3 1.4E-11 3E-16 93.1 9.6 120 1-164 56-192 (201)
155 KOG1673|consensus 99.3 2E-11 4.3E-16 87.9 9.4 115 1-165 73-187 (205)
156 cd01888 eIF2_gamma eIF2-gamma 99.3 2.1E-11 4.5E-16 92.8 10.0 111 1-163 87-198 (203)
157 cd01879 FeoB Ferrous iron tran 99.3 1.6E-11 3.6E-16 88.5 8.1 101 1-162 47-155 (158)
158 cd04105 SR_beta Signal recogni 99.3 7.2E-12 1.6E-16 95.4 5.9 69 1-79 52-124 (203)
159 TIGR00231 small_GTP small GTP- 99.3 2.1E-11 4.5E-16 86.9 7.9 105 1-160 54-160 (161)
160 PRK15467 ethanolamine utilizat 99.2 2.9E-11 6.3E-16 88.5 7.7 105 1-166 41-149 (158)
161 cd01881 Obg_like The Obg-like 99.2 6.1E-11 1.3E-15 87.0 9.2 109 1-162 48-175 (176)
162 TIGR01393 lepA GTP-binding pro 99.2 3.1E-11 6.7E-16 105.2 8.3 63 1-78 74-136 (595)
163 COG2229 Predicted GTPase [Gene 99.2 5.7E-11 1.2E-15 87.7 8.3 105 1-162 72-176 (187)
164 TIGR02729 Obg_CgtA Obg family 99.2 6E-11 1.3E-15 96.6 9.1 112 1-163 209-328 (329)
165 TIGR00491 aIF-2 translation in 99.2 5.1E-11 1.1E-15 103.5 9.1 136 1-162 73-214 (590)
166 cd01878 HflX HflX subfamily. 99.2 7.4E-11 1.6E-15 89.4 8.8 102 1-162 93-203 (204)
167 cd01889 SelB_euk SelB subfamil 99.2 2.3E-10 4.9E-15 86.1 11.2 115 1-164 72-186 (192)
168 TIGR03594 GTPase_EngA ribosome 99.2 1.2E-10 2.6E-15 97.7 10.3 110 1-164 224-344 (429)
169 PRK03003 GTP-binding protein D 99.2 2.1E-10 4.6E-15 97.6 11.0 110 1-165 263-383 (472)
170 KOG0077|consensus 99.2 3E-11 6.6E-16 87.7 4.8 123 2-162 69-191 (193)
171 PRK03003 GTP-binding protein D 99.1 2.4E-10 5.3E-15 97.3 8.7 63 1-78 90-160 (472)
172 TIGR00436 era GTP-binding prot 99.1 6.1E-10 1.3E-14 88.3 10.2 135 1-166 52-195 (270)
173 TIGR00157 ribosome small subun 99.1 1.8E-10 3.8E-15 90.3 7.0 57 8-78 24-81 (245)
174 TIGR00487 IF-2 translation ini 99.1 2.4E-10 5.3E-15 99.3 7.7 109 1-161 139-247 (587)
175 PRK05433 GTP-binding protein L 99.1 3.6E-10 7.9E-15 98.6 8.7 63 1-78 78-140 (600)
176 PF08477 Miro: Miro-like prote 99.1 9.4E-11 2E-15 81.1 3.8 63 1-75 54-119 (119)
177 PRK15494 era GTPase Era; Provi 99.1 4.8E-10 1E-14 91.8 8.5 132 1-166 104-247 (339)
178 KOG3883|consensus 99.1 9.2E-10 2E-14 79.2 8.8 111 1-164 64-175 (198)
179 PF00009 GTP_EFTU: Elongation 99.1 3.5E-09 7.5E-14 79.5 12.4 112 1-163 74-186 (188)
180 TIGR03156 GTP_HflX GTP-binding 99.1 3.4E-10 7.5E-15 93.0 7.4 66 1-78 241-315 (351)
181 cd01894 EngA1 EngA1 subfamily. 99.0 1.2E-09 2.6E-14 78.4 8.3 100 1-162 49-156 (157)
182 cd01883 EF1_alpha Eukaryotic e 99.0 3.4E-10 7.3E-15 87.1 5.5 70 1-77 81-150 (219)
183 TIGR00450 mnmE_trmE_thdF tRNA 99.0 1.4E-09 3.1E-14 91.8 9.7 101 1-125 255-363 (442)
184 CHL00189 infB translation init 99.0 6.2E-10 1.4E-14 98.6 7.8 110 1-162 299-408 (742)
185 PRK05291 trmE tRNA modificatio 99.0 8E-10 1.7E-14 93.6 7.9 128 1-163 267-402 (449)
186 PRK12296 obgE GTPase CgtA; Rev 99.0 2E-09 4.3E-14 91.7 9.8 73 1-79 210-299 (500)
187 PRK05306 infB translation init 99.0 1.4E-09 3E-14 97.1 9.0 109 1-161 341-449 (787)
188 TIGR00475 selB selenocysteine- 99.0 1.6E-09 3.4E-14 94.4 8.9 64 1-79 54-118 (581)
189 TIGR00437 feoB ferrous iron tr 99.0 1.2E-09 2.6E-14 95.3 8.2 62 1-79 45-114 (591)
190 PRK12297 obgE GTPase CgtA; Rev 99.0 2.8E-09 6E-14 89.4 9.8 70 1-77 210-287 (424)
191 PRK04004 translation initiatio 99.0 2.4E-09 5.2E-14 93.3 9.8 135 1-161 75-215 (586)
192 TIGR00483 EF-1_alpha translati 99.0 1.2E-09 2.7E-14 91.9 7.1 65 1-78 89-155 (426)
193 cd01895 EngA2 EngA2 subfamily. 99.0 6.6E-09 1.4E-13 75.5 9.8 108 1-161 54-172 (174)
194 TIGR03680 eif2g_arch translati 99.0 3.5E-09 7.5E-14 88.7 8.8 112 1-163 84-195 (406)
195 TIGR01394 TypA_BipA GTP-bindin 98.9 5.2E-09 1.1E-13 91.3 10.1 64 1-79 68-131 (594)
196 PRK11058 GTPase HflX; Provisio 98.9 4.8E-09 1E-13 88.2 9.6 67 1-78 249-323 (426)
197 cd04164 trmE TrmE (MnmE, ThdF, 98.9 5.4E-09 1.2E-13 74.9 8.2 96 1-163 53-156 (157)
198 PRK10218 GTP-binding protein; 98.9 7.6E-09 1.7E-13 90.3 9.9 65 1-80 72-136 (607)
199 PRK00093 GTP-binding protein D 98.9 6.6E-09 1.4E-13 87.5 9.1 61 1-78 53-123 (435)
200 cd00880 Era_like Era (E. coli 98.9 7.8E-09 1.7E-13 73.5 7.9 107 1-162 49-162 (163)
201 PRK00093 GTP-binding protein D 98.9 1.2E-08 2.6E-13 85.9 10.1 109 1-164 225-344 (435)
202 PRK09518 bifunctional cytidyla 98.9 1.4E-08 3E-13 90.6 10.6 63 1-78 502-575 (712)
203 cd04168 TetM_like Tet(M)-like 98.9 2.3E-08 5E-13 78.0 9.8 63 1-78 68-130 (237)
204 PRK09518 bifunctional cytidyla 98.9 7.3E-09 1.6E-13 92.3 7.7 62 1-78 327-397 (712)
205 PRK00089 era GTPase Era; Revie 98.8 2.9E-08 6.3E-13 79.4 9.4 101 1-118 57-167 (292)
206 PRK04000 translation initiatio 98.8 2.2E-08 4.8E-13 84.0 8.9 112 1-163 89-200 (411)
207 PRK00454 engB GTP-binding prot 98.8 5.4E-08 1.2E-12 72.8 10.2 107 1-163 74-193 (196)
208 cd04163 Era Era subfamily. Er 98.8 1.2E-08 2.7E-13 73.3 6.2 105 1-162 55-167 (168)
209 PRK12298 obgE GTPase CgtA; Rev 98.8 3E-08 6.6E-13 82.5 9.2 111 1-120 211-331 (390)
210 PRK12317 elongation factor 1-a 98.8 2.3E-08 4.9E-13 84.2 8.3 65 1-78 88-153 (425)
211 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 4.6E-08 1E-12 75.9 9.1 118 1-164 52-176 (232)
212 KOG0090|consensus 98.8 8.8E-09 1.9E-13 78.0 4.8 139 1-162 86-237 (238)
213 cd04166 CysN_ATPS CysN_ATPS su 98.8 3.8E-08 8.3E-13 75.1 8.4 64 1-78 81-144 (208)
214 PRK10512 selenocysteinyl-tRNA- 98.8 3.1E-08 6.8E-13 86.8 8.6 63 1-78 55-118 (614)
215 TIGR03594 GTPase_EngA ribosome 98.7 3.2E-08 6.9E-13 83.1 7.5 64 1-79 51-122 (429)
216 cd04167 Snu114p Snu114p subfam 98.7 1.3E-07 2.9E-12 72.3 9.9 62 1-77 75-136 (213)
217 TIGR03598 GTPase_YsxC ribosome 98.7 4.2E-08 9.1E-13 72.9 6.1 95 1-110 68-178 (179)
218 PRK14845 translation initiatio 98.7 1.1E-07 2.4E-12 87.1 9.8 63 1-78 530-592 (1049)
219 PF09439 SRPRB: Signal recogni 98.7 1.3E-08 2.9E-13 76.0 3.2 71 1-80 53-128 (181)
220 cd01885 EF2 EF2 (for archaea a 98.7 1.1E-07 2.4E-12 73.5 8.3 63 1-78 77-139 (222)
221 cd01886 EF-G Elongation factor 98.6 3.6E-07 7.8E-12 72.6 10.4 63 1-78 68-130 (270)
222 cd01855 YqeH YqeH. YqeH is an 98.6 6.8E-08 1.5E-12 72.5 5.9 52 10-78 24-75 (190)
223 PRK13768 GTPase; Provisional 98.6 5.1E-08 1.1E-12 76.8 4.7 129 1-163 101-246 (253)
224 PRK13351 elongation factor G; 98.6 6.8E-07 1.5E-11 79.5 12.2 65 1-80 77-141 (687)
225 PRK00741 prfC peptide chain re 98.6 2E-07 4.3E-12 80.5 8.4 63 1-78 83-145 (526)
226 cd04165 GTPBP1_like GTPBP1-lik 98.6 3.9E-07 8.4E-12 70.5 9.1 129 1-160 88-219 (224)
227 cd01896 DRG The developmentall 98.5 4.1E-07 9E-12 70.7 8.2 32 1-32 51-89 (233)
228 TIGR00484 EF-G translation elo 98.5 8.5E-07 1.8E-11 79.0 11.0 64 1-79 79-142 (689)
229 TIGR03597 GTPase_YqeH ribosome 98.5 3.7E-07 8E-12 75.4 7.7 55 7-78 50-104 (360)
230 cd01876 YihA_EngB The YihA (En 98.5 1.8E-06 3.8E-11 62.2 9.7 106 1-162 49-169 (170)
231 cd04169 RF3 RF3 subfamily. Pe 98.5 4.1E-07 9E-12 72.2 6.4 64 1-79 75-138 (267)
232 cd01884 EF_Tu EF-Tu subfamily. 98.5 3.1E-06 6.8E-11 64.1 10.9 62 1-77 69-131 (195)
233 TIGR00503 prfC peptide chain r 98.4 1.1E-06 2.4E-11 75.9 9.2 63 1-78 84-146 (527)
234 cd01859 MJ1464 MJ1464. This f 98.4 5.6E-07 1.2E-11 65.3 6.2 54 10-78 2-55 (156)
235 PRK12736 elongation factor Tu; 98.4 3E-06 6.5E-11 70.8 11.1 63 1-78 79-142 (394)
236 KOG1144|consensus 98.4 3.5E-06 7.5E-11 74.0 10.1 140 1-166 544-689 (1064)
237 PRK00098 GTPase RsgA; Reviewed 98.4 8.1E-07 1.8E-11 71.6 5.8 46 19-77 79-124 (298)
238 TIGR00485 EF-Tu translation el 98.3 7E-06 1.5E-10 68.6 11.3 63 1-78 79-142 (394)
239 PRK09554 feoB ferrous iron tra 98.3 1.5E-06 3.3E-11 78.0 7.7 99 1-118 54-164 (772)
240 PLN00043 elongation factor 1-a 98.3 1.7E-06 3.7E-11 73.4 7.3 62 1-77 89-158 (447)
241 PRK12740 elongation factor G; 98.3 3.6E-06 7.9E-11 74.7 9.6 64 1-79 64-127 (668)
242 KOG0462|consensus 98.3 1.9E-06 4.2E-11 73.3 6.6 106 1-163 129-234 (650)
243 PF02421 FeoB_N: Ferrous iron 98.3 7.5E-06 1.6E-10 59.9 8.7 63 1-80 51-121 (156)
244 COG0532 InfB Translation initi 98.2 6.1E-06 1.3E-10 70.1 8.8 115 2-168 60-174 (509)
245 PRK12289 GTPase RsgA; Reviewed 98.2 3.3E-06 7.1E-11 69.5 6.9 52 13-78 82-134 (352)
246 PTZ00327 eukaryotic translatio 98.2 1.9E-05 4.2E-10 67.2 10.6 65 1-78 121-185 (460)
247 PRK12735 elongation factor Tu; 98.2 2.4E-05 5.2E-10 65.5 10.8 63 1-78 79-142 (396)
248 cd04170 EF-G_bact Elongation f 98.1 4.7E-06 1E-10 66.0 5.0 64 1-79 68-131 (268)
249 TIGR02034 CysN sulfate adenyly 98.1 1.4E-05 3.1E-10 67.0 7.4 64 1-78 84-147 (406)
250 PRK12739 elongation factor G; 98.1 4E-05 8.6E-10 68.5 10.5 64 1-79 77-140 (691)
251 KOG1707|consensus 98.0 1.4E-05 3E-10 68.5 6.8 114 1-164 60-175 (625)
252 PRK05124 cysN sulfate adenylyl 98.0 2E-05 4.3E-10 67.4 7.7 64 1-78 111-174 (474)
253 PF03029 ATP_bind_1: Conserved 98.0 3.1E-05 6.8E-10 60.4 8.2 131 1-163 95-236 (238)
254 PRK12288 GTPase RsgA; Reviewed 98.0 1.9E-05 4.2E-10 64.9 7.3 45 20-78 120-164 (347)
255 cd01854 YjeQ_engC YjeQ/EngC. 98.0 2.4E-05 5.1E-10 62.7 7.3 49 17-79 75-124 (287)
256 cd04104 p47_IIGP_like p47 (47- 98.0 9.1E-05 2E-09 56.0 9.8 60 1-78 56-121 (197)
257 CHL00071 tufA elongation facto 98.0 0.00012 2.5E-09 61.6 11.2 63 1-78 79-142 (409)
258 PLN03126 Elongation factor Tu; 98.0 5.8E-05 1.3E-09 64.6 9.5 63 1-78 148-211 (478)
259 KOG1489|consensus 98.0 2.5E-05 5.5E-10 62.7 6.7 88 16-114 270-359 (366)
260 PRK05506 bifunctional sulfate 97.9 1.7E-05 3.6E-10 70.1 5.0 98 1-112 108-211 (632)
261 PTZ00141 elongation factor 1- 97.9 0.00013 2.8E-09 62.0 10.1 63 1-77 89-158 (446)
262 KOG1532|consensus 97.9 8.7E-05 1.9E-09 58.8 8.2 135 1-164 120-264 (366)
263 cd01858 NGP_1 NGP-1. Autoanti 97.9 5.7E-05 1.2E-09 54.9 6.8 49 17-78 5-53 (157)
264 PF06858 NOG1: Nucleolar GTP-b 97.9 6.3E-05 1.4E-09 45.4 5.6 45 21-75 14-58 (58)
265 PRK09866 hypothetical protein; 97.8 0.00027 5.9E-09 62.1 11.2 112 1-161 234-350 (741)
266 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.9E-05 6.2E-10 55.6 4.4 74 17-108 8-83 (141)
267 COG1160 Predicted GTPases [Gen 97.8 0.00021 4.7E-09 59.9 9.9 110 1-163 230-350 (444)
268 cd01899 Ygr210 Ygr210 subfamil 97.8 0.00031 6.7E-09 57.2 10.7 32 1-32 73-111 (318)
269 TIGR00490 aEF-2 translation el 97.8 3.7E-05 8.1E-10 68.9 5.2 64 1-79 90-153 (720)
270 PRK00049 elongation factor Tu; 97.7 0.00039 8.4E-09 58.2 10.7 63 1-78 79-142 (396)
271 PRK00007 elongation factor G; 97.7 0.00028 6.1E-09 63.1 10.4 64 1-79 79-142 (693)
272 COG1159 Era GTPase [General fu 97.7 0.00024 5.2E-09 56.7 7.9 100 2-120 59-170 (298)
273 PLN03127 Elongation factor Tu; 97.6 0.00096 2.1E-08 56.8 11.5 63 1-78 128-191 (447)
274 COG0481 LepA Membrane GTPase L 97.6 0.00011 2.4E-09 62.0 5.6 66 1-81 80-145 (603)
275 PRK13796 GTPase YqeH; Provisio 97.6 0.00048 1E-08 57.1 8.5 22 140-161 135-156 (365)
276 COG0536 Obg Predicted GTPase [ 97.5 0.00029 6.2E-09 57.3 6.5 100 16-124 233-335 (369)
277 COG1160 Predicted GTPases [Gen 97.5 0.0003 6.6E-09 59.0 6.7 100 1-121 55-164 (444)
278 COG2262 HflX GTPases [General 97.5 0.00052 1.1E-08 57.0 7.9 49 20-79 271-319 (411)
279 cd01849 YlqF_related_GTPase Yl 97.5 0.00064 1.4E-08 49.2 7.4 42 22-78 1-43 (155)
280 KOG3886|consensus 97.5 0.00019 4.2E-09 55.5 4.5 66 1-79 57-131 (295)
281 KOG1145|consensus 97.4 0.00069 1.5E-08 58.3 7.8 66 1-81 205-270 (683)
282 PF10662 PduV-EutP: Ethanolami 97.3 0.0019 4.2E-08 46.5 7.7 97 2-160 41-142 (143)
283 cd01856 YlqF YlqF. Proteins o 97.3 0.001 2.2E-08 49.0 6.5 50 12-78 11-60 (171)
284 cd01850 CDC_Septin CDC/Septin. 97.2 0.00054 1.2E-08 54.6 5.1 77 8-100 100-180 (276)
285 COG0486 ThdF Predicted GTPase 97.1 0.00092 2E-08 56.4 5.6 100 1-122 269-376 (454)
286 smart00010 small_GTPase Small 97.1 0.00047 1E-08 47.2 2.8 56 11-79 37-92 (124)
287 TIGR03596 GTPase_YlqF ribosome 97.0 0.0033 7.2E-08 50.1 7.1 47 15-78 16-62 (276)
288 TIGR00101 ureG urease accessor 96.9 0.00072 1.6E-08 51.4 2.8 26 139-164 171-196 (199)
289 PRK07560 elongation factor EF- 96.9 0.0013 2.9E-08 59.2 5.0 64 1-79 91-154 (731)
290 COG1217 TypA Predicted membran 96.9 0.005 1.1E-07 52.2 7.9 65 1-80 72-136 (603)
291 PTZ00416 elongation factor 2; 96.9 0.0017 3.6E-08 59.4 5.4 62 1-77 96-157 (836)
292 TIGR00073 hypB hydrogenase acc 96.9 0.0037 8.1E-08 47.5 6.4 24 139-162 182-205 (207)
293 PLN00116 translation elongatio 96.9 0.0019 4.1E-08 59.1 5.5 62 1-77 102-163 (843)
294 KOG1490|consensus 96.8 0.0036 7.7E-08 53.5 6.6 96 22-167 249-344 (620)
295 cd01852 AIG1 AIG1 (avrRpt2-ind 96.8 0.024 5.2E-07 42.5 10.6 104 17-165 80-185 (196)
296 COG5256 TEF1 Translation elong 96.8 0.0038 8.2E-08 52.0 6.1 31 1-31 89-119 (428)
297 PRK01889 GTPase RsgA; Reviewed 96.7 0.015 3.2E-07 48.1 9.0 47 19-79 111-157 (356)
298 PRK09563 rbgA GTPase YlqF; Rev 96.6 0.0083 1.8E-07 48.1 7.1 46 16-78 20-65 (287)
299 PF01926 MMR_HSR1: 50S ribosom 96.4 0.017 3.6E-07 39.4 6.4 56 1-73 51-116 (116)
300 KOG0705|consensus 96.3 0.014 3.1E-07 50.4 6.7 102 15-166 90-191 (749)
301 COG0218 Predicted GTPase [Gene 96.2 0.053 1.2E-06 41.1 9.0 49 13-78 96-149 (200)
302 COG5257 GCD11 Translation init 96.2 0.02 4.3E-07 46.7 6.7 109 2-164 91-202 (415)
303 PRK09435 membrane ATPase/prote 96.1 0.068 1.5E-06 43.8 9.6 55 2-78 154-208 (332)
304 COG2895 CysN GTPases - Sulfate 96.1 0.038 8.2E-07 45.5 7.9 62 1-78 90-153 (431)
305 TIGR00750 lao LAO/AO transport 96.0 0.039 8.5E-07 44.5 7.8 16 64-79 172-187 (300)
306 KOG0468|consensus 96.0 0.017 3.6E-07 51.1 5.9 65 1-80 201-265 (971)
307 KOG1423|consensus 95.9 0.058 1.3E-06 43.7 7.9 49 18-81 153-202 (379)
308 COG0480 FusA Translation elong 95.4 0.02 4.4E-07 51.3 4.3 65 1-80 80-144 (697)
309 COG3276 SelB Selenocysteine-sp 95.3 0.13 2.7E-06 43.5 8.3 64 2-79 55-118 (447)
310 KOG3905|consensus 95.3 0.4 8.7E-06 39.4 10.9 26 139-164 265-290 (473)
311 COG1084 Predicted GTPase [Gene 95.3 0.068 1.5E-06 43.5 6.5 47 21-78 248-294 (346)
312 COG0370 FeoB Fe2+ transport sy 95.2 0.069 1.5E-06 47.2 7.0 88 12-118 71-160 (653)
313 KOG0458|consensus 95.1 0.018 3.9E-07 49.9 2.8 68 1-77 259-328 (603)
314 COG4108 PrfC Peptide chain rel 94.9 0.048 1E-06 46.1 4.8 63 1-78 85-147 (528)
315 KOG3887|consensus 94.9 0.57 1.2E-05 37.0 10.3 120 1-165 79-203 (347)
316 COG5258 GTPBP1 GTPase [General 94.8 0.35 7.6E-06 40.6 9.4 123 2-156 206-331 (527)
317 COG4917 EutP Ethanolamine util 94.7 0.36 7.7E-06 34.2 8.0 98 2-161 42-143 (148)
318 PF00350 Dynamin_N: Dynamin fa 94.7 0.086 1.9E-06 38.1 5.3 60 1-74 105-168 (168)
319 cd01882 BMS1 Bms1. Bms1 is an 94.5 0.36 7.8E-06 37.2 8.7 59 2-78 88-147 (225)
320 KOG1143|consensus 94.5 0.16 3.4E-06 42.5 6.7 123 1-154 253-378 (591)
321 COG1162 Predicted GTPases [Gen 94.2 0.13 2.7E-06 41.6 5.6 18 63-80 109-126 (301)
322 PRK10463 hydrogenase nickel in 93.6 0.13 2.7E-06 41.5 4.5 25 138-162 263-287 (290)
323 TIGR03348 VI_IcmF type VI secr 93.5 0.26 5.7E-06 46.9 7.3 72 1-77 165-256 (1169)
324 KOG1424|consensus 93.4 0.22 4.8E-06 42.9 5.9 59 10-82 165-223 (562)
325 smart00053 DYNc Dynamin, GTPas 93.2 0.34 7.3E-06 38.0 6.4 54 11-78 152-206 (240)
326 PF14331 ImcF-related_N: ImcF- 92.9 0.71 1.5E-05 36.6 7.9 53 20-77 25-82 (266)
327 cd04178 Nucleostemin_like Nucl 92.7 0.11 2.4E-06 38.5 2.8 16 64-79 30-45 (172)
328 KOG1191|consensus 92.7 0.52 1.1E-05 40.5 7.0 24 143-166 429-452 (531)
329 COG3596 Predicted GTPase [Gene 92.2 0.97 2.1E-05 36.2 7.6 124 1-163 91-221 (296)
330 TIGR00991 3a0901s02IAP34 GTP-b 91.4 0.37 8.1E-06 39.2 4.7 67 1-77 90-166 (313)
331 cd03110 Fer4_NifH_child This p 90.9 1.2 2.5E-05 32.7 6.6 61 1-78 97-157 (179)
332 KOG1707|consensus 90.8 1.3 2.9E-05 38.8 7.6 65 19-97 494-558 (625)
333 COG0378 HypB Ni2+-binding GTPa 90.6 0.65 1.4E-05 35.3 5.0 25 139-163 176-200 (202)
334 PF04548 AIG1: AIG1 family; I 90.3 3.2 7E-05 31.5 8.8 51 17-78 80-130 (212)
335 COG0050 TufB GTPases - transla 89.3 1.3 2.7E-05 36.1 5.9 82 2-97 80-163 (394)
336 KOG2423|consensus 89.1 1.3 2.7E-05 37.5 5.9 59 6-81 198-261 (572)
337 COG3640 CooC CO dehydrogenase 89.0 0.95 2.1E-05 35.4 4.9 59 2-77 139-198 (255)
338 PF03308 ArgK: ArgK protein; 86.9 1.1 2.3E-05 35.7 4.1 22 140-161 206-227 (266)
339 KOG0447|consensus 86.9 4.6 9.9E-05 35.7 8.1 102 8-126 436-544 (980)
340 PRK09602 translation-associate 86.8 1.7 3.7E-05 36.6 5.6 32 1-32 76-114 (396)
341 cd02038 FleN-like FleN is a me 86.2 3.3 7.1E-05 29.2 6.1 62 1-77 49-110 (139)
342 PF05783 DLIC: Dynein light in 85.6 4.2 9E-05 35.1 7.4 70 65-166 197-266 (472)
343 KOG0461|consensus 84.8 9.3 0.0002 31.9 8.6 27 139-165 164-194 (522)
344 COG1161 Predicted GTPases [Gen 83.8 3.6 7.7E-05 33.6 6.0 57 7-80 21-77 (322)
345 TIGR03371 cellulose_yhjQ cellu 82.9 16 0.00035 27.9 9.2 63 1-77 119-181 (246)
346 COG1703 ArgK Putative periplas 82.0 4 8.6E-05 33.2 5.4 53 68-120 193-252 (323)
347 PHA02518 ParA-like protein; Pr 80.4 21 0.00045 26.5 8.8 28 1-30 81-108 (211)
348 KOG0464|consensus 79.2 0.47 1E-05 40.2 -0.7 65 1-80 106-170 (753)
349 KOG0467|consensus 79.0 3.2 6.9E-05 37.8 4.3 66 1-81 76-141 (887)
350 KOG0460|consensus 78.3 6.5 0.00014 32.7 5.6 81 3-97 123-205 (449)
351 cd03111 CpaE_like This protein 77.6 10 0.00022 25.3 5.7 60 1-73 47-106 (106)
352 KOG0465|consensus 77.5 2.6 5.7E-05 37.4 3.3 64 1-79 108-171 (721)
353 PF05049 IIGP: Interferon-indu 77.3 24 0.00052 29.6 8.8 59 1-76 90-153 (376)
354 cd01853 Toc34_like Toc34-like 76.5 11 0.00024 29.6 6.4 66 1-77 83-162 (249)
355 COG4963 CpaE Flp pilus assembl 75.0 7.9 0.00017 32.3 5.3 63 1-77 222-284 (366)
356 cd02036 MinD Bacterial cell di 74.3 14 0.00031 26.5 6.2 61 1-77 67-127 (179)
357 KOG4273|consensus 73.5 15 0.00032 29.4 6.2 43 21-77 79-122 (418)
358 KOG1954|consensus 71.1 9.7 0.00021 32.1 4.9 51 15-79 176-226 (532)
359 KOG0459|consensus 67.5 4.7 0.0001 34.2 2.5 67 1-78 161-231 (501)
360 KOG0466|consensus 66.9 10 0.00022 31.2 4.2 61 65-163 180-240 (466)
361 PRK09602 translation-associate 66.5 9.6 0.00021 32.1 4.2 43 63-110 216-258 (396)
362 KOG2484|consensus 64.5 13 0.00028 31.5 4.4 45 19-78 145-191 (435)
363 cd03112 CobW_like The function 61.3 11 0.00023 27.3 3.1 16 20-35 118-133 (158)
364 PF02492 cobW: CobW/HypB/UreG, 61.0 16 0.00036 26.7 4.2 45 20-80 113-157 (178)
365 KOG2485|consensus 60.9 24 0.00052 28.9 5.3 47 16-79 42-88 (335)
366 cd03115 SRP The signal recogni 60.8 39 0.00084 24.3 6.2 61 1-78 87-153 (173)
367 COG3523 IcmF Type VI protein s 60.5 17 0.00036 35.1 5.0 72 2-78 179-270 (1188)
368 TIGR00064 ftsY signal recognit 58.3 26 0.00057 27.8 5.2 60 1-77 159-230 (272)
369 cd01452 VWA_26S_proteasome_sub 56.3 36 0.00077 25.6 5.3 49 22-72 4-56 (187)
370 TIGR01425 SRP54_euk signal rec 55.6 30 0.00065 29.6 5.3 60 1-77 187-252 (429)
371 cd02042 ParA ParA and ParB of 55.0 44 0.00096 21.6 5.2 41 1-54 44-84 (104)
372 KOG0448|consensus 54.2 95 0.0021 28.3 8.2 52 12-79 223-276 (749)
373 COG1163 DRG Predicted GTPase [ 54.2 28 0.00061 28.8 4.7 89 65-166 240-330 (365)
374 PRK13505 formate--tetrahydrofo 53.7 69 0.0015 28.4 7.2 45 64-111 372-418 (557)
375 cd01458 vWA_ku Ku70/Ku80 N-ter 52.0 44 0.00096 25.2 5.4 52 22-73 2-57 (218)
376 PRK15494 era GTPase Era; Provi 51.6 11 0.00024 30.9 2.1 25 139-163 191-215 (339)
377 COG0523 Putative GTPases (G3E 51.2 23 0.00049 29.1 3.8 46 20-80 116-161 (323)
378 cd01900 YchF YchF subfamily. 49.7 58 0.0013 26.0 5.8 32 1-32 66-104 (274)
379 PTZ00258 GTP-binding protein; 49.3 50 0.0011 27.9 5.6 34 1-34 89-129 (390)
380 TIGR02836 spore_IV_A stage IV 49.3 1.8E+02 0.0039 25.3 9.4 48 20-76 144-192 (492)
381 KOG1534|consensus 48.7 1.1E+02 0.0023 24.1 6.8 138 1-165 102-252 (273)
382 cd04121 Rab40 Rab40 subfamily. 48.0 13 0.00028 27.7 1.8 28 95-122 140-167 (189)
383 KOG0463|consensus 47.8 16 0.00034 31.0 2.4 25 13-37 209-233 (641)
384 PF02829 3H: 3H domain; Inter 44.9 76 0.0016 21.2 5.0 47 115-161 47-93 (98)
385 PRK00771 signal recognition pa 44.7 51 0.0011 28.2 5.1 30 1-30 180-215 (437)
386 PRK14722 flhF flagellar biosyn 44.3 73 0.0016 26.7 5.8 68 1-77 220-294 (374)
387 TIGR00436 era GTP-binding prot 43.8 17 0.00037 28.6 2.0 24 140-163 140-163 (270)
388 TIGR01969 minD_arch cell divis 42.0 1.1E+02 0.0023 23.2 6.2 61 1-77 113-173 (251)
389 PRK13849 putative crown gall t 41.4 82 0.0018 24.3 5.4 62 1-75 88-151 (231)
390 TIGR01968 minD_bact septum sit 41.2 1E+02 0.0022 23.5 6.0 60 1-76 116-175 (261)
391 PF07764 Omega_Repress: Omega 41.0 28 0.0006 21.3 2.1 24 144-167 43-66 (71)
392 KOG0463|consensus 40.4 79 0.0017 26.9 5.3 72 41-130 286-357 (641)
393 CHL00175 minD septum-site dete 39.8 99 0.0022 24.2 5.8 60 1-76 131-190 (281)
394 PF01656 CbiA: CobQ/CobB/MinD/ 39.7 55 0.0012 23.6 4.1 63 1-77 99-161 (195)
395 PRK10416 signal recognition pa 39.6 75 0.0016 25.9 5.2 40 20-76 232-271 (318)
396 PRK14974 cell division protein 39.6 66 0.0014 26.5 4.9 11 20-30 252-262 (336)
397 cd02117 NifH_like This family 38.7 1E+02 0.0022 23.1 5.5 47 20-77 141-188 (212)
398 KOG0469|consensus 38.1 23 0.00051 31.1 2.0 62 1-77 102-163 (842)
399 cd04126 Rab20 Rab20 subfamily. 37.7 22 0.00049 27.2 1.8 31 99-129 167-197 (220)
400 cd02032 Bchl_like This family 37.2 1E+02 0.0022 23.9 5.5 45 18-76 136-184 (267)
401 KOG1423|consensus 37.2 30 0.00064 28.5 2.4 32 99-143 248-279 (379)
402 TIGR00959 ffh signal recogniti 37.0 89 0.0019 26.7 5.3 30 1-30 187-222 (428)
403 KOG1249|consensus 36.4 34 0.00074 30.1 2.7 22 140-161 187-208 (572)
404 PRK09601 GTP-binding protein Y 36.2 1.2E+02 0.0025 25.5 5.8 32 1-32 70-108 (364)
405 cd03114 ArgK-like The function 34.7 73 0.0016 22.7 3.9 27 1-30 96-122 (148)
406 PRK13185 chlL protochlorophyll 34.3 1.1E+02 0.0025 23.7 5.4 48 18-76 138-186 (270)
407 COG0541 Ffh Signal recognition 33.6 1.2E+02 0.0025 26.2 5.4 30 1-30 187-222 (451)
408 PF09005 DUF1897: Domain of un 33.4 19 0.0004 19.8 0.5 17 4-20 5-21 (38)
409 cd01983 Fer4_NifH The Fer4_Nif 32.1 1.2E+02 0.0027 18.5 5.4 61 1-72 38-99 (99)
410 KOG0081|consensus 31.2 54 0.0012 24.4 2.7 37 93-129 152-188 (219)
411 TIGR03172 probable selenium-de 30.7 2E+02 0.0044 22.4 6.0 63 18-80 124-204 (232)
412 PRK10867 signal recognition pa 29.6 1.3E+02 0.0028 25.8 5.1 30 1-30 188-223 (433)
413 PRK00089 era GTPase Era; Revie 29.5 44 0.00095 26.4 2.2 25 139-163 146-170 (292)
414 PF00448 SRP54: SRP54-type pro 29.4 1.5E+02 0.0033 22.2 5.0 30 1-30 88-123 (196)
415 KOG2743|consensus 28.6 1E+02 0.0022 25.5 4.1 50 21-80 178-227 (391)
416 cd04170 EF-G_bact Elongation f 28.2 1.3E+02 0.0028 23.5 4.7 27 136-162 238-264 (268)
417 TIGR00993 3a0901s04IAP86 chlor 27.9 1.7E+02 0.0036 27.0 5.7 47 20-78 201-250 (763)
418 cd02035 ArsA ArsA ATPase funct 27.8 2.6E+02 0.0056 21.0 6.2 63 1-77 118-183 (217)
419 COG1149 MinD superfamily P-loo 27.8 2.1E+02 0.0046 23.0 5.7 58 17-96 182-239 (284)
420 cd02037 MRP-like MRP (Multiple 27.6 2.3E+02 0.005 20.1 6.8 61 1-77 72-134 (169)
421 cd01453 vWA_transcription_fact 25.7 1.5E+02 0.0033 21.8 4.5 46 23-70 5-54 (183)
422 PRK11537 putative GTP-binding 25.4 70 0.0015 26.1 2.8 16 21-36 123-138 (318)
423 PF11185 DUF2971: Protein of u 25.0 64 0.0014 19.9 2.0 18 13-30 1-18 (90)
424 TIGR00578 ku70 ATP-dependent D 24.9 1.6E+02 0.0034 26.3 5.0 57 18-74 7-68 (584)
425 KOG0780|consensus 24.2 2.3E+02 0.005 24.3 5.5 31 1-31 188-224 (483)
426 KOG0458|consensus 23.7 2.1E+02 0.0045 25.7 5.3 56 2-63 297-353 (603)
427 TIGR01281 DPOR_bchL light-inde 23.0 2.3E+02 0.005 21.9 5.3 18 149-166 229-246 (268)
428 PF14606 Lipase_GDSL_3: GDSL-l 22.5 1.6E+02 0.0034 22.0 4.0 105 5-146 42-146 (178)
429 COG0012 Predicted GTPase, prob 22.3 58 0.0013 27.3 1.7 43 63-105 205-247 (372)
430 KOG1552|consensus 22.3 2.6E+02 0.0057 22.2 5.3 53 21-74 87-139 (258)
431 TIGR01007 eps_fam capsular exo 22.0 3.3E+02 0.0071 20.0 6.0 47 18-78 148-194 (204)
432 CHL00072 chlL photochlorophyll 21.7 3E+02 0.0065 21.9 5.7 47 19-76 137-184 (290)
433 PF14784 ECIST_Cterm: C-termin 21.4 2.4E+02 0.0052 19.8 4.4 41 20-70 83-124 (126)
434 KOG0410|consensus 21.3 1.2E+02 0.0027 25.3 3.3 75 20-116 257-335 (410)
435 PRK10818 cell division inhibit 21.2 3.4E+02 0.0073 20.9 5.9 64 1-77 118-186 (270)
436 TIGR00750 lao LAO/AO transport 21.0 91 0.002 25.0 2.6 24 140-163 214-237 (300)
437 COG4502 5'(3')-deoxyribonucleo 21.0 3.4E+02 0.0074 19.8 5.2 32 41-74 94-125 (180)
438 PHA01747 putative ATP-dependen 20.1 1.5E+02 0.0033 25.2 3.7 88 5-96 220-322 (425)
No 1
>KOG0082|consensus
Probab=100.00 E-value=3.4e-41 Score=271.15 Aligned_cols=156 Identities=48% Similarity=0.834 Sum_probs=149.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
++|+|||+++|++|.|||.++++||||+++|+|||++.||...||+.+++.+|+++++++++.+++|+||+||.|||+++
T Consensus 199 ~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEK 278 (354)
T KOG0082|consen 199 MFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEK 278 (354)
T ss_pred EEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. +.+++.|||+|.| . +++++|..||..+|.++++ ...+++|+|+|||+|++||+.+|.++.
T Consensus 279 i~--~~~~~~~Fpdy~G------------~-~~~~~a~~yI~~kF~~l~~---~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 279 IK--KVPLTDCFPDYKG------------V-NTYEEAAKYIRKKFEELNK---NKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred hc--cCchhhhCcCCCC------------C-CChHHHHHHHHHHHHHHhc---ccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 98 8999999999995 3 5788999999999999998 444899999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q psy12099 161 DIIQRMHLRQYELL 174 (174)
Q Consensus 161 ~~i~~~~~~~~~l~ 174 (174)
++|++.+++..||+
T Consensus 341 d~Ii~~nlk~~gl~ 354 (354)
T KOG0082|consen 341 DTIIQNNLKDAGLI 354 (354)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999985
No 2
>KOG0099|consensus
Probab=100.00 E-value=1.1e-38 Score=245.03 Aligned_cols=174 Identities=89% Similarity=1.447 Sum_probs=169.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
++|+|||+-.|++|..+|.++.+||||+.+|+|++++.||++.|++.+++.+|+++-++.|+..+.+||++||+|+..++
T Consensus 206 MfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeK 285 (379)
T KOG0099|consen 206 MFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK 285 (379)
T ss_pred eeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+..+++.+.+|||+|.+...|..|.+..|.+..+..|+.||.+.|..+.++++..++..|.|+|||.|++||+.+|.++.
T Consensus 286 i~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDcr 365 (379)
T KOG0099|consen 286 ILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR 365 (379)
T ss_pred HHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHHHHH
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q psy12099 161 DIIQRMHLRQYELL 174 (174)
Q Consensus 161 ~~i~~~~~~~~~l~ 174 (174)
+.|++.||+.++||
T Consensus 366 diIqr~hlrqyeLl 379 (379)
T KOG0099|consen 366 DIIQRMHLRQYELL 379 (379)
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999997
No 3
>KOG0085|consensus
Probab=100.00 E-value=6.5e-38 Score=237.53 Aligned_cols=157 Identities=50% Similarity=0.855 Sum_probs=150.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.|+|||+++|++|.|||+++.+++|.+.+|+|||++.|..+.|++++++.+|..++.-||+.+.++++++||.|+.+++
T Consensus 203 mvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEek 282 (359)
T KOG0085|consen 203 MVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK 282 (359)
T ss_pred eeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. .+.+-.|||+|. |+..+.++|..||.+.|.+++. ...+.+++|+|||+|++||+.+|.++.
T Consensus 283 I~--ySHl~~YFPe~~------------GP~qDa~AAreFILkm~~d~nP---d~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 283 IL--YSHLADYFPEFD------------GPKQDAQAAREFILKMYVDMNP---DSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred hh--HHHHHHhCcccC------------CCcccHHHHHHHHHHHHHhhCC---CccceeeeeeeecccchhHHHHHHHHH
Confidence 99 889999999999 5677899999999999999998 677889999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q psy12099 161 DIIQRMHLRQYELL 174 (174)
Q Consensus 161 ~~i~~~~~~~~~l~ 174 (174)
++|++.+|++++|+
T Consensus 346 DtiLq~~LkE~NLv 359 (359)
T KOG0085|consen 346 DTILQLNLKEYNLV 359 (359)
T ss_pred HHHHHhhhHhhccC
Confidence 99999999999985
No 4
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=3.8e-36 Score=242.94 Aligned_cols=153 Identities=56% Similarity=0.937 Sum_probs=144.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||+|||+++|++|.+||.+++++|||+|+|+||+.+.|+...+++.+++..|+.+++++.+.++|++|++||+|++.++
T Consensus 165 ~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~k 244 (317)
T cd00066 165 MFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEK 244 (317)
T ss_pred EECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
++ ..+++.+||+|.+ .++++++|.+||..+|.++++ ..++.+|.|+|||+|+++|+.+|+.+.
T Consensus 245 i~--~~~l~~~fp~y~g------------~~~~~~~~~~~i~~~F~~~~~---~~~~~~~~~~t~a~Dt~~i~~vf~~v~ 307 (317)
T cd00066 245 IK--KSPLTDYFPDYTG------------PPNDYEEAAKFIRKKFLDLNR---NPNKEIYPHFTCATDTENIRFVFDAVK 307 (317)
T ss_pred hc--CCCccccCCCCCC------------CCCCHHHHHHHHHHHHHHhhc---CCCCeEEEEeccccchHHHHHHHHHHH
Confidence 99 6799999999984 345799999999999999987 356889999999999999999999999
Q ss_pred HHHHHhhhhh
Q psy12099 161 DIIQRMHLRQ 170 (174)
Q Consensus 161 ~~i~~~~~~~ 170 (174)
+.|+++++++
T Consensus 308 ~~i~~~~l~~ 317 (317)
T cd00066 308 DIILQNNLKD 317 (317)
T ss_pred HHHHHHHhcC
Confidence 9999998863
No 5
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=6e-36 Score=243.75 Aligned_cols=155 Identities=52% Similarity=0.885 Sum_probs=145.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||+|||+++|++|.+||.++++||||+|+|+||++++|+.+.+++.+++..|+.+++++.+.++|++|++||.|++.++
T Consensus 188 ~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~K 267 (342)
T smart00275 188 MFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEK 267 (342)
T ss_pred EEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. ..++.++||+|+| . +++++|.+||.++|.++++. ..++.+|.|+|||+|+.+++.+|+.+.
T Consensus 268 l~--~~~l~~~fp~y~g------------~-~~~~~~~~yi~~~F~~~~~~--~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 268 IK--KVPLVDYFPDYKG------------P-NDYEAAAKFIKQKFLRLNRN--SSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred hC--CCchhccCCCCCC------------C-CCHHHHHHHHHHHHHHhccC--CCCceEEEEEeeecccHHHHHHHHHHH
Confidence 99 6699999999985 2 47899999999999999872 145789999999999999999999999
Q ss_pred HHHHHhhhhhcc
Q psy12099 161 DIIQRMHLRQYE 172 (174)
Q Consensus 161 ~~i~~~~~~~~~ 172 (174)
+.|++++++..|
T Consensus 331 ~~I~~~~l~~~~ 342 (342)
T smart00275 331 DIILQRNLKDAG 342 (342)
T ss_pred HHHHHHHHHhcC
Confidence 999999998765
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=8.1e-34 Score=235.23 Aligned_cols=149 Identities=54% Similarity=0.924 Sum_probs=135.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
++|+|||+.+|++|.+||.++++||||+++|+||++++|+...|++.+++.+|+++++++++.++|++|++||.|++.++
T Consensus 240 ~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~K 319 (389)
T PF00503_consen 240 LIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEK 319 (389)
T ss_dssp EEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHH
T ss_pred eecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccccc-hhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 81 VKAGKSR-LEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~-l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+. ..+ ++++||+|.| +.+++++.|.+||.++|.+++++... .+.+|+|.|||+|+++|+.+|+.|
T Consensus 320 l~--~~~~l~~~fp~y~g-----------~~~~~~~~~~~~i~~~f~~~~~~~~~-~~~~~~h~t~a~d~~~~~~v~~~v 385 (389)
T PF00503_consen 320 LK--KGPKLSKYFPDYTG-----------DRPNDVDSAIKFIKNKFLRLNRNNSP-SRRIYVHFTCATDTENIRKVFNAV 385 (389)
T ss_dssp TT--TSSCGGGTSTTGGS-----------H-TSSHHHHHHHHHHHHHCTHSTTTT-CS-EEEEEESTTSHHHHHHHHHHH
T ss_pred cc--CCCchHhhCCCCCC-----------CcccCHHHHHHHHHHHHHHhccCCCC-CcceEEEEeeecccHHHHHHHHHh
Confidence 99 555 9999999984 12468999999999999999984311 188999999999999999999999
Q ss_pred HHHH
Q psy12099 160 RDII 163 (174)
Q Consensus 160 ~~~i 163 (174)
.++|
T Consensus 386 ~~~i 389 (389)
T PF00503_consen 386 KDII 389 (389)
T ss_dssp HHHH
T ss_pred cCcC
Confidence 9886
No 7
>KOG0084|consensus
Probab=99.94 E-value=5.8e-27 Score=173.19 Aligned_cols=113 Identities=20% Similarity=0.180 Sum_probs=97.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||||||++..+|||+|+|||+|||+ ++..+|.....|+.++-.. ...++|.+|||||+|+.+.+
T Consensus 62 IWDTAGQERFrtit~syYR~ahGii~vyDi----------T~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 62 IWDTAGQERFRTITSSYYRGAHGIIFVYDI----------TKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKR 130 (205)
T ss_pred eeeccccHHHhhhhHhhccCCCeEEEEEEc----------ccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhhe
Confidence 799999999999999999999999999999 8999999999999998655 45789999999999998876
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCccee-eeecccccchhHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCY-PHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~-~~~tsA~d~~~i~~~f~~~ 159 (174)
.. +.++|..|. ....+. +.+|||+++.||+++|..+
T Consensus 131 ~v------------------------------~~~~a~~fa-------------~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 131 VV------------------------------STEEAQEFA-------------DELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred ec------------------------------CHHHHHHHH-------------HhcCCcceeecccCCccCHHHHHHHH
Confidence 44 245565552 233455 8899999999999999999
Q ss_pred HHHHHHhh
Q psy12099 160 RDIIQRMH 167 (174)
Q Consensus 160 ~~~i~~~~ 167 (174)
+..|..+.
T Consensus 168 a~~lk~~~ 175 (205)
T KOG0084|consen 168 AKELKQRK 175 (205)
T ss_pred HHHHHHhc
Confidence 99998763
No 8
>KOG0092|consensus
Probab=99.93 E-value=1.7e-26 Score=170.13 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=98.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||||||+|+++-+.|||+|+++|+|||+ ++.++|..+..|+.++-+... +++.|.|+|||+||.+.+
T Consensus 58 IWDTAGQERy~slapMYyRgA~AAivvYDi----------t~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 58 IWDTAGQERYHSLAPMYYRGANAAIVVYDI----------TDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERR 126 (200)
T ss_pred EEEcCCcccccccccceecCCcEEEEEEec----------ccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcc
Confidence 799999999999999999999999999999 999999999999999866644 889999999999998744
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+++|..| +.+..+.+++||||++.||+++|..|.
T Consensus 127 ~V------------------------------~~~ea~~y-------------Ae~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 127 EV------------------------------EFEEAQAY-------------AESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred cc------------------------------cHHHHHHH-------------HHhcCCEEEEEecccccCHHHHHHHHH
Confidence 22 25667777 334568899999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.|....
T Consensus 164 ~~lp~~~ 170 (200)
T KOG0092|consen 164 EKLPCSD 170 (200)
T ss_pred HhccCcc
Confidence 9887543
No 9
>KOG0078|consensus
Probab=99.91 E-value=1.2e-24 Score=162.71 Aligned_cols=112 Identities=19% Similarity=0.126 Sum_probs=94.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++||.+...||++|.++++|||+ ++..+|+.+..|++.+-.+ ...++|++|||||+|+..++
T Consensus 65 iWDtaGQerf~ti~~sYyrgA~gi~LvyDi----------tne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R 133 (207)
T KOG0078|consen 65 IWDTAGQERFRTITTAYYRGAMGILLVYDI----------TNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKR 133 (207)
T ss_pred EEEcccchhHHHHHHHHHhhcCeeEEEEEc----------cchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccc
Confidence 699999999999999999999999999999 8999999999988887555 45689999999999998755
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. + .+.+.++ +....+.++||||+++.||.++|..++
T Consensus 134 ~V----~--------------------------~e~ge~l-------------A~e~G~~F~EtSAk~~~NI~eaF~~La 170 (207)
T KOG0078|consen 134 QV----S--------------------------KERGEAL-------------AREYGIKFFETSAKTNFNIEEAFLSLA 170 (207)
T ss_pred cc----c--------------------------HHHHHHH-------------HHHhCCeEEEccccCCCCHHHHHHHHH
Confidence 33 1 2223333 223458899999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.|+.+
T Consensus 171 ~~i~~k 176 (207)
T KOG0078|consen 171 RDILQK 176 (207)
T ss_pred HHHHhh
Confidence 999965
No 10
>KOG0086|consensus
Probab=99.91 E-value=4.8e-24 Score=152.17 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=99.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|||+||+....||+++.++++|||+ +++++|++.-.|+.++.. ...+++.++|+|||.||..++
T Consensus 62 IWDTAGQErFRSVtRsYYRGAAGAlLVYD~----------TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 62 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred EeecccHHHHHHHHHHHhccccceEEEEec----------cchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhh
Confidence 799999999999999999999999999999 999999999999998743 356789999999999997765
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. ++.+|..| +..+.+.+++|||++|+||++.|-.+.
T Consensus 131 ~V------------------------------tflEAs~F-------------aqEnel~flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 131 EV------------------------------TFLEASRF-------------AQENELMFLETSALTGENVEEAFLKCA 167 (214)
T ss_pred hh------------------------------hHHHHHhh-------------hcccceeeeeecccccccHHHHHHHHH
Confidence 33 36677777 556778999999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
.+|+.+
T Consensus 168 ~tIl~k 173 (214)
T KOG0086|consen 168 RTILNK 173 (214)
T ss_pred HHHHHH
Confidence 999976
No 11
>KOG0087|consensus
Probab=99.90 E-value=3.9e-24 Score=159.76 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=98.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||||||.+...||+++.|+++|||+ +...+|+....|+.++..+ ..++++|+|+|||+||...+
T Consensus 67 IWDTAGQERyrAitSaYYrgAvGAllVYDI----------Tr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lr 135 (222)
T KOG0087|consen 67 IWDTAGQERYRAITSAYYRGAVGALLVYDI----------TRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLR 135 (222)
T ss_pred eecccchhhhccccchhhcccceeEEEEec----------hhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhcc
Confidence 799999999999999999999999999999 8999999999999998776 45799999999999997643
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..++++.| +....+++++|||+++.||+.+|+.+.
T Consensus 136 aV------------------------------~te~~k~~-------------Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 136 AV------------------------------PTEDGKAF-------------AEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred cc------------------------------chhhhHhH-------------HHhcCceEEEecccccccHHHHHHHHH
Confidence 22 13445655 334568999999999999999999999
Q ss_pred HHHHHhhhh
Q psy12099 161 DIIQRMHLR 169 (174)
Q Consensus 161 ~~i~~~~~~ 169 (174)
..|.+...+
T Consensus 173 ~~I~~~vs~ 181 (222)
T KOG0087|consen 173 TEIYKIVSK 181 (222)
T ss_pred HHHHHHHHH
Confidence 999877544
No 12
>KOG0080|consensus
Probab=99.89 E-value=1.4e-23 Score=150.72 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=96.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||||||+||.+.+.|||++.++|.|||+ +.+++|...-.|..++-......++..+|||||.|...++
T Consensus 64 iWDTAGqErFRtLTpSyyRgaqGiIlVYDV----------T~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R 133 (209)
T KOG0080|consen 64 IWDTAGQERFRTLTPSYYRGAQGIILVYDV----------TSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER 133 (209)
T ss_pred EEeccchHhhhccCHhHhccCceeEEEEEc----------cchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc
Confidence 799999999999999999999999999999 8999999998898888666666788999999999976554
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +-++..+| ++++...++++||++.+||+.+|+++.
T Consensus 134 ~V------------------------------~reEG~kf-------------Ar~h~~LFiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 134 VV------------------------------DREEGLKF-------------ARKHRCLFIECSAKTRENVQCCFEELV 170 (209)
T ss_pred cc------------------------------cHHHHHHH-------------HHhhCcEEEEcchhhhccHHHHHHHHH
Confidence 33 23445566 345678899999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.|++
T Consensus 171 eKIi~ 175 (209)
T KOG0080|consen 171 EKIIE 175 (209)
T ss_pred HHHhc
Confidence 99885
No 13
>KOG0094|consensus
Probab=99.89 E-value=4.5e-23 Score=152.40 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=94.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||||||||||++.+.|+|++.++|+|||+ ++.++|+....|++++.+.....++-|+|||||.||.+++
T Consensus 75 lWDTAGQERFrslipsY~Rds~vaviVyDi----------t~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDI----------TDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR 144 (221)
T ss_pred EEecccHHHHhhhhhhhccCCeEEEEEEec----------cccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh
Confidence 699999999999999999999999999999 8999999999999999988877779999999999998764
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. .. +++..- +++....+.+|||+.|.||+++|..|+
T Consensus 145 qv----s~--------------------------eEg~~k-------------Akel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 145 QV----SI--------------------------EEGERK-------------AKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred hh----hH--------------------------HHHHHH-------------HHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 22 10 111100 223446788999999999999999998
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
..+...
T Consensus 182 a~l~~~ 187 (221)
T KOG0094|consen 182 AALPGM 187 (221)
T ss_pred HhccCc
Confidence 877654
No 14
>KOG0070|consensus
Probab=99.89 E-value=4.9e-23 Score=151.13 Aligned_cols=116 Identities=22% Similarity=0.390 Sum_probs=98.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||+|||+++|.+|.+||++.+++|||+|. ++++|+.++.+.+..+++++...++|+++++||+|++.+.
T Consensus 65 vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS----------~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 65 VWDVGGQEKLRPLWKHYFQNTQGLIFVVDS----------SDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred EEecCCCcccccchhhhccCCcEEEEEEeC----------CcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 699999999999999999999999999999 8999999999999999999988999999999999998764
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. ..+.+.+ .+.+ .+.+.++++.|||.+|+++.+.++++.
T Consensus 135 s~---~ei~~~L----------------------------------~l~~---l~~~~w~iq~~~a~~G~GL~egl~wl~ 174 (181)
T KOG0070|consen 135 SA---AEITNKL----------------------------------GLHS---LRSRNWHIQSTCAISGEGLYEGLDWLS 174 (181)
T ss_pred CH---HHHHhHh----------------------------------hhhc---cCCCCcEEeeccccccccHHHHHHHHH
Confidence 22 1222111 1111 345889999999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 175 ~~~~~~ 180 (181)
T KOG0070|consen 175 NNLKKR 180 (181)
T ss_pred HHHhcc
Confidence 988653
No 15
>KOG0098|consensus
Probab=99.89 E-value=5e-23 Score=151.13 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=96.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|||+||+....||+++.|+|+|||+ +.+++|.....|+.++.++. .+|+.|+|+|||+||...+
T Consensus 59 iwDtaGqe~frsv~~syYr~a~GalLVydi----------t~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 59 IWDTAGQESFRSVTRSYYRGAAGALLVYDI----------TRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR 127 (216)
T ss_pred EEecCCcHHHHHHHHHHhccCcceEEEEEc----------cchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc
Confidence 799999999999999999999999999999 99999999999999997763 5799999999999998655
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +-++...| ++.+.+-+.+|||++++||+++|....
T Consensus 128 ~V------------------------------s~EEGeaF-------------A~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 128 EV------------------------------SKEEGEAF-------------AREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred cc------------------------------cHHHHHHH-------------HHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 22 12333444 223556677999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
..|.++.
T Consensus 165 ~~Iy~~~ 171 (216)
T KOG0098|consen 165 KEIYRKI 171 (216)
T ss_pred HHHHHHH
Confidence 9998764
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.88 E-value=2.1e-22 Score=153.31 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=88.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++|+.+|..||++++++|+|||+ ++.++|+++..|+..+. .....++|++|+|||+|+..++
T Consensus 53 iwDtaGqe~~~~l~~~y~~~ad~iIlVfDv----------td~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 53 IWDTAGQERFNSITSAYYRSAKGIILVYDI----------TKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred EEeCCCchhhHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 89999999998887654 3345679999999999996432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... .+.+.+++|||++|.||.++|.++.
T Consensus 122 ~v------------------------------~~~~~~~~a~~------------~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 122 EI------------------------------SRQQGEKFAQQ------------ITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred cc------------------------------CHHHHHHHHHh------------cCCCEEEEecCCCCCCHHHHHHHHH
Confidence 11 01122233110 1235678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 160 ~~~~~~ 165 (202)
T cd04120 160 DDILKK 165 (202)
T ss_pred HHHHHh
Confidence 988764
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.88 E-value=2.5e-22 Score=151.50 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=91.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++|+.+|..||++++++|+|||+ +++++|+.+..|+..+... .+++|++|+|||+|+...+
T Consensus 59 iwDt~G~~~~~~l~~~~~~~ad~illVfD~----------t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~ 126 (189)
T cd04121 59 LWDTSGQGRFCTIFRSYSRGAQGIILVYDI----------TNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKR 126 (189)
T ss_pred EEeCCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhcc
Confidence 699999999999999999999999999999 8999999999999998654 2579999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.+++|||+++.||+++|+++.
T Consensus 127 ~v------------------------------~~~~~~~~a~-------------~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 127 QV------------------------------ATEQAQAYAE-------------RNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCEEEEecCCCCCCHHHHHHHHH
Confidence 11 1233444432 2336788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++.+
T Consensus 164 ~~i~~~ 169 (189)
T cd04121 164 RIVLMR 169 (189)
T ss_pred HHHHHh
Confidence 988754
No 18
>KOG0091|consensus
Probab=99.88 E-value=2.3e-22 Score=144.96 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=99.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-CCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-LRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|||+||++...||++.-+++.|||+ ++..+|+....|+++..-+-. ..++.++|||.|+||-..
T Consensus 62 lwdtagqerfrsitksyyrnsvgvllvydi----------tnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 62 LWDTAGQERFRSITKSYYRNSVGVLLVYDI----------TNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred EeeccchHHHHHHHHHHhhcccceEEEEec----------cchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 699999999999999999999999999999 899999999999988754433 456789999999999765
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. +.++|.+| +..+.+.+.+|||+++.||+++|..+
T Consensus 132 RqV------------------------------t~EEaEkl-------------Aa~hgM~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 132 RQV------------------------------TAEEAEKL-------------AASHGMAFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred ccc------------------------------cHHHHHHH-------------HHhcCceEEEecccCCCcHHHHHHHH
Confidence 433 36677777 34577999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy12099 160 RDIIQRMHLR 169 (174)
Q Consensus 160 ~~~i~~~~~~ 169 (174)
++.|...-.+
T Consensus 169 aqeIf~~i~q 178 (213)
T KOG0091|consen 169 AQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHhc
Confidence 9999876443
No 19
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=3.3e-22 Score=149.68 Aligned_cols=116 Identities=27% Similarity=0.423 Sum_probs=92.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||++||++++.+|.+||++++++|||+|+ ++..++.++..++..+++.....++|++|++||+|+..+.
T Consensus 65 i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~----------s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEEEeC----------CcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 699999999999999999999999999999 7888999999999998877666789999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.+. ..+.. -..+.+++.+|||++|+||.++|+++.
T Consensus 135 -~--~~~~~~~----------------------------------l~l~~---~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 135 -N--AAEITDK----------------------------------LGLHS---LRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred -C--HHHHHHH----------------------------------hCccc---cCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 1 0111111 11111 123557788899999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 175 ~~~~~~ 180 (181)
T PLN00223 175 NNIANK 180 (181)
T ss_pred HHHhhc
Confidence 988765
No 20
>KOG0394|consensus
Probab=99.88 E-value=1.2e-22 Score=148.85 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=96.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC---CCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL---RTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~---~~~~iilv~NK~Dl~ 77 (174)
||||||||||+++...+||++|++++|||+ ++..+|+..-.|-++++..... ..-||||+|||.|+.
T Consensus 62 iWDTAGQERFqsLg~aFYRgaDcCvlvydv----------~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 62 IWDTAGQERFQSLGVAFYRGADCCVLVYDV----------NNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEecccHHHhhhcccceecCCceEEEEeec----------CChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 799999999999999999999999999999 9999999999999998765432 346999999999997
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
..+-. . .+-+.|..|... ++.+.+++||||+..||.++|+
T Consensus 132 ~~~~r----~------------------------VS~~~Aq~WC~s------------~gnipyfEtSAK~~~NV~~AFe 171 (210)
T KOG0394|consen 132 GGKSR----Q------------------------VSEKKAQTWCKS------------KGNIPYFETSAKEATNVDEAFE 171 (210)
T ss_pred CCccc----e------------------------eeHHHHHHHHHh------------cCCceeEEecccccccHHHHHH
Confidence 63211 0 023446666543 3568899999999999999999
Q ss_pred HHHHHHHHhh
Q psy12099 158 DCRDIIQRMH 167 (174)
Q Consensus 158 ~~~~~i~~~~ 167 (174)
.++...+...
T Consensus 172 ~ia~~aL~~E 181 (210)
T KOG0394|consen 172 EIARRALANE 181 (210)
T ss_pred HHHHHHHhcc
Confidence 9999888654
No 21
>KOG0071|consensus
Probab=99.87 E-value=3.6e-22 Score=140.55 Aligned_cols=112 Identities=23% Similarity=0.430 Sum_probs=97.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||+|||.+.|.+|.|||.+..++|||+|. .+.++++++.+.+..+++++.+.+.|+++++||+|++.++
T Consensus 65 vwdvGGqd~iRplWrhYy~gtqglIFV~Ds----------a~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 65 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDS----------ADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred eeeccCchhhhHHHHhhccCCceEEEEEec----------cchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 699999999999999999999999999999 6889999999999999999999999999999999999875
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.+ ..+++ |.++.+ .+++.++++.+||.+|+++.+.|.++.
T Consensus 135 ~p---qei~d----------------------------------~leLe~---~r~~~W~vqp~~a~~gdgL~eglswls 174 (180)
T KOG0071|consen 135 KP---QEIQD----------------------------------KLELER---IRDRNWYVQPSCALSGDGLKEGLSWLS 174 (180)
T ss_pred CH---HHHHH----------------------------------Hhcccc---ccCCccEeeccccccchhHHHHHHHHH
Confidence 33 22322 223333 567889999999999999999999987
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 175 nn 176 (180)
T KOG0071|consen 175 NN 176 (180)
T ss_pred hh
Confidence 54
No 22
>KOG0088|consensus
Probab=99.87 E-value=2.9e-22 Score=143.80 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=94.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|||+|..+-+.||++.+++++|||+ +++.+|+..+.|..++... ....+.++|||||.||.+++
T Consensus 66 IWDTAGQErfHALGPIYYRgSnGalLVyDI----------TDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 66 IWDTAGQERFHALGPIYYRGSNGALLVYDI----------TDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEER 134 (218)
T ss_pred eeeccchHhhhccCceEEeCCCceEEEEec----------cchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhh
Confidence 799999999999999999999999999999 9999999999999997654 33467899999999998876
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. +.++|..|.. .-...+.+|||+++.+|.++|+.+.
T Consensus 135 ~V------------------------------t~qeAe~YAe-------------svGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 135 QV------------------------------TRQEAEAYAE-------------SVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred hh------------------------------hHHHHHHHHH-------------hhchhheecccccccCHHHHHHHHH
Confidence 43 2345666632 2334567899999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
..++...
T Consensus 172 ~~MiE~~ 178 (218)
T KOG0088|consen 172 AKMIEHS 178 (218)
T ss_pred HHHHHHh
Confidence 8887653
No 23
>KOG0079|consensus
Probab=99.87 E-value=3.2e-22 Score=142.03 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=99.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||+||||+||.+...||++.+++|.|||+ ++.++|.....|++++.++.. ..|=+|||||.|.++.+
T Consensus 61 IwDtAGqErFrtitstyyrgthgv~vVYDV----------Tn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERR 128 (198)
T ss_pred EeecccHHHHHHHHHHHccCCceEEEEEEC----------cchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccce
Confidence 799999999999999999999999999999 999999999999999877643 78999999999998876
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +-++|..|. ..-.+..++|||++.+|++.+|..|.
T Consensus 129 vV------------------------------~t~dAr~~A-------------~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 129 VV------------------------------DTEDARAFA-------------LQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred ee------------------------------ehHHHHHHH-------------HhcCchheehhhhhcccchHHHHHHH
Confidence 55 234566663 23457889999999999999999999
Q ss_pred HHHHHhhhh
Q psy12099 161 DIIQRMHLR 169 (174)
Q Consensus 161 ~~i~~~~~~ 169 (174)
+.+++..++
T Consensus 166 ~qvl~~k~r 174 (198)
T KOG0079|consen 166 KQVLQAKLR 174 (198)
T ss_pred HHHHHHHHh
Confidence 999887654
No 24
>KOG0093|consensus
Probab=99.87 E-value=3.6e-22 Score=141.64 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=96.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|||+||.+...|||++.++|++||+ ++.++|.....|.-.+.. ....+.|++|++||||+..++
T Consensus 74 iwDTagqEryrtiTTayyRgamgfiLmyDi----------tNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 74 IWDTAGQERYRTITTAYYRGAMGFILMYDI----------TNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred EEecccchhhhHHHHHHhhccceEEEEEec----------CCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccce
Confidence 799999999999999999999999999999 899999988888877644 455799999999999998887
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+....++. ...+.+++||||.+.||+++|+.+.
T Consensus 143 vi--s----------------------------~e~g~~l~~-------------~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 143 VI--S----------------------------HERGRQLAD-------------QLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred ee--e----------------------------HHHHHHHHH-------------HhChHHhhhcccccccHHHHHHHHH
Confidence 54 1 122233321 2335778999999999999999999
Q ss_pred HHHHHhhhhhccC
Q psy12099 161 DIIQRMHLRQYEL 173 (174)
Q Consensus 161 ~~i~~~~~~~~~l 173 (174)
+.|-++.-.+..+
T Consensus 180 ~~Ic~kmsesl~~ 192 (193)
T KOG0093|consen 180 DIICDKMSESLDL 192 (193)
T ss_pred HHHHHHhhhhhcc
Confidence 9998776555443
No 25
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.86 E-value=1.5e-21 Score=145.23 Aligned_cols=113 Identities=23% Similarity=0.419 Sum_probs=90.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|.+||++++++|||+|+ +++.+++++.+++..+++.....++|++|++||+|+.+..
T Consensus 61 l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~----------t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDS----------NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 699999999999999999999999999999 7889999999999999876556789999999999986431
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.+.+. +.. ...+.++++.+||++|.||.++|++|.
T Consensus 131 -~--~~~i~~~~~----------------------------------~~~---~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 131 -K--AAEITEKLG----------------------------------LHS---IRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred -C--HHHHHHHhC----------------------------------ccc---cCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 1 111111110 111 234567888999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 171 ~~~ 173 (175)
T smart00177 171 NNL 173 (175)
T ss_pred HHh
Confidence 765
No 26
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.85 E-value=5.9e-21 Score=142.19 Aligned_cols=114 Identities=25% Similarity=0.369 Sum_probs=94.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||+|||+++|..|.+||++++++|||+|. ++.+++.++.+.+..+++++...++|++|++||+|+.+..
T Consensus 62 ~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs----------sd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 62 IWDLGGQESFRPLWKSYFQNADGIIFVVDS----------SDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp EEEESSSGGGGGGGGGGHTTESEEEEEEET----------TGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred EEeccccccccccceeeccccceeEEEEec----------ccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 699999999999999999999999999999 7889999999999999999888899999999999987532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.+.-.. ....+.+.++.|||++|+++.++|+||.
T Consensus 132 ~~---~~i~~~l~l~~------------------------------------l~~~~~~~v~~~sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 132 SE---EEIKEYLGLEK------------------------------------LKNKRPWSVFSCSAKTGEGVDEGLEWLI 172 (175)
T ss_dssp TH---HHHHHHTTGGG------------------------------------TTSSSCEEEEEEBTTTTBTHHHHHHHHH
T ss_pred hh---hHHHhhhhhhh------------------------------------cccCCceEEEeeeccCCcCHHHHHHHHH
Confidence 11 12222221111 0225678999999999999999999999
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.|
T Consensus 173 ~~~ 175 (175)
T PF00025_consen 173 EQI 175 (175)
T ss_dssp HHH
T ss_pred hcC
Confidence 876
No 27
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.85 E-value=3.2e-21 Score=145.37 Aligned_cols=124 Identities=11% Similarity=0.189 Sum_probs=90.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++|+.+|..||++++++|+|||+ +++.+|+.+.. |...+.+. ..++|++|+|||+||.+.
T Consensus 55 i~Dt~G~e~~~~l~~~~~~~a~~~ilvydi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 55 LWDTAGQEEYDRLRTLSYPQTNVFIICFSI----------ASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRND 122 (191)
T ss_pred EEECCCchhhhhhhhhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcC
Confidence 699999999999999999999999999999 89999999874 66665443 357999999999999653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.+ ... ..-..+++.++... ...+.+++|||+++.||+++|.++
T Consensus 123 ~~~--~~~~~~----~~~------------~~v~~~~~~~~a~~------------~~~~~~~e~SAk~g~~v~e~f~~l 172 (191)
T cd01875 123 ADT--LKKLKE----QGQ------------APITPQQGGALAKQ------------IHAVKYLECSALNQDGVKEVFAEA 172 (191)
T ss_pred hhh--HHHHhh----ccC------------CCCCHHHHHHHHHH------------cCCcEEEEeCCCCCCCHHHHHHHH
Confidence 211 011111 000 00123345554211 122578899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.++..
T Consensus 173 ~~~~~~~ 179 (191)
T cd01875 173 VRAVLNP 179 (191)
T ss_pred HHHHhcc
Confidence 9988764
No 28
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.85 E-value=3e-21 Score=142.71 Aligned_cols=111 Identities=23% Similarity=0.423 Sum_probs=87.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..||++++++|||+|+ ++..++.+...++.++++.....++|++|++||+|+.+..
T Consensus 57 l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~----------t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (168)
T cd04149 57 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDS----------ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126 (168)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEEEeC----------CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence 699999999999999999999999999999 7888999999999999877656789999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.+++ .+.+ ...+.+.+++|||++|.||.++|++|.
T Consensus 127 -~--~~~i~~~~----------------------------------~~~~---~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 127 -K--PHEIQEKL----------------------------------GLTR---IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred -C--HHHHHHHc----------------------------------CCCc---cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 1 11111111 1111 123446788999999999999999986
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 167 ~ 167 (168)
T cd04149 167 S 167 (168)
T ss_pred c
Confidence 4
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.85 E-value=2.7e-21 Score=144.25 Aligned_cols=119 Identities=11% Similarity=0.144 Sum_probs=89.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++|++++..||++++++|+|||+ +++++|+.+ ..|+..+.+.. .++|++|||||+|+.++
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~----------~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 53 LWDTAGQEDYNRLRPLSYRGADVFVLAFSL----------ISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDD 120 (176)
T ss_pred EEECCCCccccccchhhcCCCcEEEEEEEc----------CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccC
Confidence 699999999999999999999999999999 899999998 57888875543 47999999999999654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~ 158 (174)
+.. ... +.. ...-..+++.++.. .... .+++|||+++.||+++|+.
T Consensus 121 ~~~----~~~----~~~------------~~~v~~~~~~~~a~-------------~~~~~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 121 KQY----LAD----HPG------------ASPITTAQGEELRK-------------QIGAAAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred hhh----hhh----ccC------------CCCCCHHHHHHHHH-------------HcCCCEEEECCCCcccCHHHHHHH
Confidence 311 000 000 00112344555532 1223 4779999999999999999
Q ss_pred HHHHHH
Q psy12099 159 CRDIIQ 164 (174)
Q Consensus 159 ~~~~i~ 164 (174)
+.+.++
T Consensus 168 ~~~~~~ 173 (176)
T cd04133 168 AIKVVL 173 (176)
T ss_pred HHHHHh
Confidence 998764
No 30
>PTZ00099 rab6; Provisional
Probab=99.85 E-value=3.9e-21 Score=143.43 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=87.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..||++++++|+|||+ ++..+|+....|+..+.+.. ..++|++|||||+|+...+
T Consensus 33 iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~----------t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~ 101 (176)
T PTZ00099 33 LWDTAGQERFRSLIPSYIRDSAAAIVVYDI----------TNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLR 101 (176)
T ss_pred EEECCChHHhhhccHHHhCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 89999999999999987653 3578999999999996432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. .....+++|||+++.||.++|+++.
T Consensus 102 ~v------------------------------~~~e~~~~~~-------------~~~~~~~e~SAk~g~nV~~lf~~l~ 138 (176)
T PTZ00099 102 KV------------------------------TYEEGMQKAQ-------------EYNTMFHETSAKAGHNIKVLFKKIA 138 (176)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 0122322211 1224567899999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+..
T Consensus 139 ~~l~~ 143 (176)
T PTZ00099 139 AKLPN 143 (176)
T ss_pred HHHHh
Confidence 88754
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.85 E-value=6.1e-21 Score=141.57 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=89.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..||++++++|+|||+ ++..++..+..|+..+.+.....++|++|++||+|+...+
T Consensus 54 i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~----------~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~ 123 (172)
T cd04141 54 ILDTAGQAEFTAMRDQYMRCGEGFIICYSV----------TDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR 123 (172)
T ss_pred EEeCCCchhhHHHhHHHhhcCCEEEEEEEC----------CchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC
Confidence 699999999999999999999999999999 8999999998877766543334579999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +.+++.++.. ...+.+++|||+++.||+++|+++.
T Consensus 124 ~v------------------------------~~~~~~~~a~-------------~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 124 QV------------------------------TTEEGRNLAR-------------EFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred cc------------------------------CHHHHHHHHH-------------HhCCEEEEEecCCCCCHHHHHHHHH
Confidence 11 1122333321 1236788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 888764
No 32
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.85 E-value=5.8e-21 Score=145.22 Aligned_cols=109 Identities=16% Similarity=0.077 Sum_probs=88.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++|+.+|..||++++++|+|||+ ++..++..+..|...+.+.. .++|++|||||+|+....
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~----------t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~ 115 (200)
T smart00176 48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDV----------TARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRK 115 (200)
T ss_pred EEECCCchhhhhhhHHHhcCCCEEEEEEEC----------CChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 89999999999988887643 579999999999985321
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. .+ ..++. ....+.+++|||+++.||+++|.++.
T Consensus 116 v~-------------------------------~~-~~~~~-------------~~~~~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 116 VK-------------------------------AK-SITFH-------------RKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred CC-------------------------------HH-HHHHH-------------HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 00 11111 12346788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++..
T Consensus 151 ~~i~~~ 156 (200)
T smart00176 151 RKLIGD 156 (200)
T ss_pred HHHHhc
Confidence 988754
No 33
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=6.2e-21 Score=139.69 Aligned_cols=111 Identities=24% Similarity=0.439 Sum_probs=87.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|.+||++++++|||+|+ ++..++.++.+++..++......++|++|++||+|+....
T Consensus 48 l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 117 (159)
T cd04150 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM 117 (159)
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC
Confidence 699999999999999999999999999999 7888999999999998876656679999999999985421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.. ++ .++. ...+.++++++||++|.||+++|+++.
T Consensus 118 -~--~~~i~~---------------------------------~~-~~~~---~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 118 -S--AAEVTD---------------------------------KL-GLHS---LRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -C--HHHHHH---------------------------------Hh-Cccc---cCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1 001110 00 0111 223557788999999999999999986
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 158 ~ 158 (159)
T cd04150 158 N 158 (159)
T ss_pred c
Confidence 4
No 34
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.84 E-value=6.5e-21 Score=142.94 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=89.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++|+.+++.||++++++|+|||+ +++.+|+.. ..|+..+.+.. +++|++|||||+||...
T Consensus 57 iwDtaG~e~~~~~~~~~~~~ad~~ilvyDi----------t~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~ 124 (182)
T cd04172 57 LWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTD 124 (182)
T ss_pred EEECCCchhhHhhhhhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcC
Confidence 699999999999999999999999999999 899999997 57777765542 57899999999998542
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcc-eeeeecccccchh-HHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHY-CYPHFTCAVDTEN-IRRVFN 157 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~-~~~~~tsA~d~~~-i~~~f~ 157 (174)
.-. +.+...... . .-..+++.++.. ... +.+++|||+++.| |+++|.
T Consensus 125 ~~~-----~~~~~~~~~---~----------~v~~~~~~~~a~-------------~~~~~~~~E~SAk~~~n~v~~~F~ 173 (182)
T cd04172 125 LTT-----LVELSNHRQ---T----------PVSYDQGANMAK-------------QIGAATYIECSALQSENSVRDIFH 173 (182)
T ss_pred hhh-----HHHHHhcCC---C----------CCCHHHHHHHHH-------------HcCCCEEEECCcCCCCCCHHHHHH
Confidence 110 000000000 0 012445666532 233 4688999999999 999999
Q ss_pred HHHHHHHH
Q psy12099 158 DCRDIIQR 165 (174)
Q Consensus 158 ~~~~~i~~ 165 (174)
.+...+++
T Consensus 174 ~~~~~~~~ 181 (182)
T cd04172 174 VATLACVN 181 (182)
T ss_pred HHHHHHhc
Confidence 99887654
No 35
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=1.2e-20 Score=141.19 Aligned_cols=116 Identities=21% Similarity=0.393 Sum_probs=91.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|.+||++++++|||+|+ ++.+++.++..++..++......++|++|++||+|+.+..
T Consensus 65 l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~----------t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 134 (182)
T PTZ00133 65 MWDVGGQDKLRPLWRHYYQNTNGLIFVVDS----------NDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134 (182)
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC
Confidence 699999999999999999999999999999 7889999999999998876556679999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+... . .+.. ...+.+++.+|||++|.||+++|+++.
T Consensus 135 -~--~~~i~~~---l-------------------------------~~~~---~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 135 -S--TTEVTEK---L-------------------------------GLHS---VRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred -C--HHHHHHH---h-------------------------------CCCc---ccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 1 0111110 0 0111 223557788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 175 ~~i~~~ 180 (182)
T PTZ00133 175 ANIKKS 180 (182)
T ss_pred HHHHHh
Confidence 888754
No 36
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=1e-20 Score=146.80 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=92.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++|+.+++.||++++++|+|||+ ++.++|+.. ..|+..+.... ++.|++|||||+||..+
T Consensus 65 iwDTaG~e~~~~~~~~~~~~ad~vIlVyDi----------t~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~ 132 (232)
T cd04174 65 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI----------SRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTD 132 (232)
T ss_pred EEeCCCchhhHHHHHHHcCCCcEEEEEEEC----------CChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccc
Confidence 699999999999999999999999999999 899999985 67777775432 47899999999998542
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccch-hHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTE-NIRRVFN 157 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~-~i~~~f~ 157 (174)
.- .+.+...... ..-..+++.+|.. ...+ .+++|||+++. ||+++|.
T Consensus 133 ~~-----~~~~l~~~~~-------------~~Vs~~e~~~~a~-------------~~~~~~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 133 LS-----TLMELSNQKQ-------------APISYEQGCALAK-------------QLGAEVYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred cc-----hhhhhccccC-------------CcCCHHHHHHHHH-------------HcCCCEEEEccCCcCCcCHHHHHH
Confidence 11 1110000000 0012455666632 2334 57899999997 8999999
Q ss_pred HHHHHHHHhhhh
Q psy12099 158 DCRDIIQRMHLR 169 (174)
Q Consensus 158 ~~~~~i~~~~~~ 169 (174)
.+...++++.+.
T Consensus 182 ~~~~~~~~~~~~ 193 (232)
T cd04174 182 SASLLCLNKLSP 193 (232)
T ss_pred HHHHHHHHhccc
Confidence 999999876544
No 37
>KOG0081|consensus
Probab=99.84 E-value=8.4e-21 Score=136.39 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=95.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|||+||++...||++|-+.+++||+ ++..+|.+...|+.++--+.--+++-|+|+|||+||...+
T Consensus 71 lWDTAGQERFRSLTTAFfRDAMGFlLiFDl----------T~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R 140 (219)
T KOG0081|consen 71 LWDTAGQERFRSLTTAFFRDAMGFLLIFDL----------TSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR 140 (219)
T ss_pred eeccccHHHHHHHHHHHHHhhccceEEEec----------cchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh
Confidence 699999999999999999999999999999 8999999999999998777666788999999999999877
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
..+ -++|... +.+..+.+++|||-+|.||++..+.+.
T Consensus 141 ~Vs------------------------------~~qa~~L-------------a~kyglPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 141 VVS------------------------------EDQAAAL-------------ADKYGLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred hhh------------------------------HHHHHHH-------------HHHhCCCeeeeccccCcCHHHHHHHHH
Confidence 551 1122222 122347888999999999999999988
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.|.++
T Consensus 178 dlvM~R 183 (219)
T KOG0081|consen 178 DLVMKR 183 (219)
T ss_pred HHHHHH
Confidence 888765
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.83 E-value=2.6e-20 Score=138.30 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=90.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..|+++++++|+|||+ ++..++.....|+..+.......+.|++|++||+|+..++
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 136 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDL----------TNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR 136 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC
Confidence 699999999999999999999999999999 8899999999999988765445678999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.|++++|+.+.
T Consensus 137 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 137 QV------------------------------SEEQAKALAD-------------KYGIPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 0122333321 1225678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++++
T Consensus 174 ~~~~~~ 179 (180)
T cd04127 174 DLVMKR 179 (180)
T ss_pred HHHHhh
Confidence 988754
No 39
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.83 E-value=3e-20 Score=137.22 Aligned_cols=116 Identities=17% Similarity=0.297 Sum_probs=90.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|.+|+++++++|||+|+ ++.+++.++..|+..+++.....+.|++|++||+|+...
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~----------s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~- 115 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDS----------SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA- 115 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeC----------CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-
Confidence 699999999999999999999999999999 788999999999999987755667899999999998642
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ...+.++..... . ...+.+.+.+|||++|.||+++|+++.
T Consensus 116 ~~--~~~~~~~~~~~~-------------------------------~-----~~~~~~~~~~~Sa~~g~gv~~~f~~l~ 157 (169)
T cd04158 116 LS--VEEMTELLSLHK-------------------------------L-----CCGRSWYIQGCDARSGMGLYEGLDWLS 157 (169)
T ss_pred CC--HHHHHHHhCCcc-------------------------------c-----cCCCcEEEEeCcCCCCCCHHHHHHHHH
Confidence 11 112222211000 0 112356788999999999999999998
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+..
T Consensus 158 ~~~~~ 162 (169)
T cd04158 158 RQLVA 162 (169)
T ss_pred HHHhh
Confidence 87654
No 40
>KOG0095|consensus
Probab=99.83 E-value=1e-20 Score=134.76 Aligned_cols=113 Identities=20% Similarity=0.211 Sum_probs=90.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|||+||++...||++++++|+|+|+ +-..+|+-.-+|+.++-+. ...++--+|||||.|+-+++
T Consensus 60 iwdtagqerfrsitqsyyrsahalilvydi----------scqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 60 IWDTAGQERFRSITQSYYRSAHALILVYDI----------SCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred EeeccchHHHHHHHHHHhhhcceEEEEEec----------ccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhh
Confidence 799999999999999999999999999999 7788999999999997544 34567779999999998765
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +.++. ..|.. .+.+|+.+|||++.+||+.+|.+++
T Consensus 129 ev--p~qig---------------------------------eefs~--------~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 129 EV--PQQIG---------------------------------EEFSE--------AQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hh--hHHHH---------------------------------HHHHH--------hhhhhhhhhcccchhhHHHHHHHHH
Confidence 33 22221 12211 1236778999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
-.++...
T Consensus 166 ~rli~~a 172 (213)
T KOG0095|consen 166 CRLISEA 172 (213)
T ss_pred HHHHHHH
Confidence 8887653
No 41
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.83 E-value=3.2e-20 Score=136.34 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=89.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|||+ +++.+++....|+..+.... .++.|++|++||+|+..++
T Consensus 55 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 55 IWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 89999999999998875542 3568999999999996543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||.++|.++.
T Consensus 124 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 124 DV------------------------------TYEEAKQFAD-------------ENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred Cc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 1222333321 1235788999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
..+++
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 88764
No 42
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.83 E-value=3.8e-20 Score=142.64 Aligned_cols=143 Identities=16% Similarity=0.087 Sum_probs=96.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..||++++++|+|||+ ++..+|.++..||..+.+. ...++|++|||||+|+.+..
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv----------t~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~ 116 (220)
T cd04126 48 IWDTAGREQFHGLGSMYCRGAAAVILTYDV----------SNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEG 116 (220)
T ss_pred EEeCCCcccchhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 8999999999999988754 34578999999999997532
Q ss_pred Hhccccch-hhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHh--hhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 81 VKAGKSRL-EDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRI--STASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 81 ~~~~~~~l-~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~--~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
...+...- ....++.. ...-..+++..+..+. ... .+........+.+++|||++|.||+++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~------------~r~v~~~e~~~~a~~~-~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 117 ALAGQEKDAGDRVSPED------------QRQVTLEDAKAFYKRI-NKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred ccccccccccccccccc------------cccCCHHHHHHHHHHh-CccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 21000000 00000000 0011345666664321 000 00000111235688999999999999999
Q ss_pred HHHHHHHHhh
Q psy12099 158 DCRDIIQRMH 167 (174)
Q Consensus 158 ~~~~~i~~~~ 167 (174)
.+.+.++...
T Consensus 184 ~i~~~~~~~~ 193 (220)
T cd04126 184 YLFNLVLPLI 193 (220)
T ss_pred HHHHHHHHHH
Confidence 9998887543
No 43
>KOG0083|consensus
Probab=99.82 E-value=7.5e-21 Score=133.12 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|||+||+....||+++++.++++|+ .+..+|+....|+.++... .-..+.++|+|||+|+..++
T Consensus 51 iwdtagqerfrsvt~ayyrda~allllydi----------ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er 119 (192)
T KOG0083|consen 51 IWDTAGQERFRSVTHAYYRDADALLLLYDI----------ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHER 119 (192)
T ss_pred EeeccchHHHhhhhHhhhcccceeeeeeec----------ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhh
Confidence 799999999999999999999999999999 8999999999999998654 23468899999999997655
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
... ..+-+.. |..| .+.+.+|||++|-||+..|..++
T Consensus 120 ~v~-~ddg~kl-------------------------a~~y-----------------~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 120 AVK-RDDGEKL-------------------------AEAY-----------------GIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccc-cchHHHH-------------------------HHHH-----------------CCCceeccccccccHhHHHHHHH
Confidence 431 1121111 2222 36788999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.+..
T Consensus 157 ~~l~k~~ 163 (192)
T KOG0083|consen 157 EELKKLK 163 (192)
T ss_pred HHHHHhc
Confidence 9987653
No 44
>KOG0097|consensus
Probab=99.82 E-value=3.5e-20 Score=131.01 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=96.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|||+||.....||+++.+.+.|+|+ +.+.+......|+.... +-..++..|+|+|||.||..++
T Consensus 64 iwdtagqerfravtrsyyrgaagalmvydi----------trrstynhlsswl~dar-~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 64 IWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDAR-NLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred EeecccHHHHHHHHHHHhccccceeEEEEe----------hhhhhhhhHHHHHhhhh-ccCCCceEEEEecchhhhhhcc
Confidence 799999999999999999999999999999 88888888888888864 3455788999999999997654
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. .+++|+.| +....+.+.++||++|+||++.|-+.+
T Consensus 133 dv------------------------------~yeeak~f-------------aeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 133 DV------------------------------TYEEAKEF-------------AEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred cC------------------------------cHHHHHHH-------------HhhcCeEEEEecccccCcHHHHHHHHH
Confidence 22 47888888 345668889999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.|.++
T Consensus 170 kkiyqn 175 (215)
T KOG0097|consen 170 KKIYQN 175 (215)
T ss_pred HHHHHh
Confidence 998865
No 45
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=3.7e-20 Score=138.32 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=87.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++|+.+++.||++++++|+|||+ +++++|+.+ ..|+..+.+.. +++|++|||||+||..+
T Consensus 53 iwDt~G~~~~~~~~~~~~~~a~~~ilvfdi----------t~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~ 120 (178)
T cd04131 53 LWDTSGSPYYDNVRPLCYPDSDAVLICFDI----------SRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTD 120 (178)
T ss_pred EEECCCchhhhhcchhhcCCCCEEEEEEEC----------CChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcC
Confidence 699999999999999999999999999999 899999996 57777765542 57899999999999642
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchh-HHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTEN-IRRVFN 157 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~-i~~~f~ 157 (174)
.-. +... ..... . .-..+++.+|.. .... .+++|||++++| |+++|.
T Consensus 121 ~~~-----~~~~-~~~~~--~----------~v~~~e~~~~a~-------------~~~~~~~~E~SA~~~~~~v~~~F~ 169 (178)
T cd04131 121 LST-----LMEL-SHQRQ--A----------PVSYEQGCAIAK-------------QLGAEIYLECSAFTSEKSVRDIFH 169 (178)
T ss_pred hhH-----HHHH-HhcCC--C----------CCCHHHHHHHHH-------------HhCCCEEEECccCcCCcCHHHHHH
Confidence 110 0000 00000 0 012445666632 2233 578999999996 999999
Q ss_pred HHHHHHH
Q psy12099 158 DCRDIIQ 164 (174)
Q Consensus 158 ~~~~~i~ 164 (174)
.+.+..+
T Consensus 170 ~~~~~~~ 176 (178)
T cd04131 170 VATMACL 176 (178)
T ss_pred HHHHHHh
Confidence 9988655
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.82 E-value=4.7e-20 Score=134.97 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=88.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..|+++++++|+|+|+ ++..++++...|+..+.+.....+.|++|++||+|+..++
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (164)
T cd04175 53 ILDTAGTEQFTAMRDLYMKNGQGFVLVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 122 (164)
T ss_pred EEECCCcccchhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhcc
Confidence 699999999999999999999999999999 8899999999999998876555789999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+. + ...+.+.++||+++.|++++|.++.
T Consensus 123 ~~------------------------------~~~~~~~~~-~------------~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 123 VV------------------------------GKEQGQNLA-R------------QWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EE------------------------------cHHHHHHHH-H------------HhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 11 011122221 1 1125678999999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+-
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 7653
No 47
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=7.6e-20 Score=138.74 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=88.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC---CCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN---RWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~---~~~~~~~iilv~NK~Dl~ 77 (174)
+|||+||++++.+|..||++++++|+|||+ +++++++.+..|+..+... +...++|++||+||+|+.
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~----------t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 54 LWDIAGQERFGGMTRVYYRGAVGAIIVFDV----------TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEECCCchhhhhhHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 699999999999999999999999999999 8999999998888776532 223578999999999996
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
..... ..+++.++... .....+++|||+++.||+++|+
T Consensus 124 ~~~~~------------------------------~~~~~~~~~~~------------~~~~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 124 KRLAK------------------------------DGEQMDQFCKE------------NGFIGWFETSAKEGINIEEAMR 161 (201)
T ss_pred ccccc------------------------------CHHHHHHHHHH------------cCCceEEEEeCCCCCCHHHHHH
Confidence 42211 11223333211 1114678999999999999999
Q ss_pred HHHHHHHHh
Q psy12099 158 DCRDIIQRM 166 (174)
Q Consensus 158 ~~~~~i~~~ 166 (174)
++.+.+++.
T Consensus 162 ~l~~~l~~~ 170 (201)
T cd04107 162 FLVKNILAN 170 (201)
T ss_pred HHHHHHHHh
Confidence 999988764
No 48
>KOG0073|consensus
Probab=99.82 E-value=1.4e-19 Score=130.46 Aligned_cols=115 Identities=22% Similarity=0.285 Sum_probs=95.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||+|||...|+.|++||..++|+|+|+|. +++.||++....+.+++.......+|++|++||+|+..+-
T Consensus 64 iwDvGGq~~lr~~W~nYfestdglIwvvDs----------sD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l 133 (185)
T KOG0073|consen 64 IWDVGGQKTLRSYWKNYFESTDGLIWVVDS----------SDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL 133 (185)
T ss_pred EEEcCCcchhHHHHHHhhhccCeEEEEEEC----------chHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc
Confidence 699999999999999999999999999999 7999999999999999988888889999999999997432
Q ss_pred Hhcc---ccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 81 VKAG---KSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 81 ~~~~---~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
-... ...+++. ++.+.+...-+||.+|+++.+.|+
T Consensus 134 ~~~~i~~~~~L~~l------------------------------------------~ks~~~~l~~cs~~tge~l~~gid 171 (185)
T KOG0073|consen 134 SLEEISKALDLEEL------------------------------------------AKSHHWRLVKCSAVTGEDLLEGID 171 (185)
T ss_pred CHHHHHHhhCHHHh------------------------------------------ccccCceEEEEeccccccHHHHHH
Confidence 1100 0111111 234557788899999999999999
Q ss_pred HHHHHHHHhh
Q psy12099 158 DCRDIIQRMH 167 (174)
Q Consensus 158 ~~~~~i~~~~ 167 (174)
|+.+.+..+.
T Consensus 172 WL~~~l~~r~ 181 (185)
T KOG0073|consen 172 WLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHh
Confidence 9999988743
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.82 E-value=6.1e-20 Score=133.74 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=86.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..|+++++++|+|||+ ++..+++....|+..+.+.....+.|++|++||+|+..++
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 53 ILDTAGTEQFTAMRDLYIKNGQGFVLVYSI----------TSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred EEECCCccccchHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 8899999999999888765445678999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. .....++++||+++.||.++|+++.
T Consensus 123 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 123 VV------------------------------SREEGQALAR-------------QWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ee------------------------------cHHHHHHHHH-------------HcCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 0111222211 1125678999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 765
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=1.1e-19 Score=139.95 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=87.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++|+.+|..||++++++|+|||+ ++..++.....|+..+... ..++|++|||||+|+....
T Consensus 66 i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~----------~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~ 133 (219)
T PLN03071 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDV----------TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ 133 (219)
T ss_pred EEECCCchhhhhhhHHHcccccEEEEEEeC----------CCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhcc
Confidence 699999999999999999999999999999 8999999999999888654 3579999999999985422
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+.+ .+.. .+.+.+++|||+++.||.++|.++.
T Consensus 134 v~-------------------------------~~~~-~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 134 VK-------------------------------AKQV-TFHR-------------KKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred CC-------------------------------HHHH-HHHH-------------hcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 11 0111 1210 1335678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+++.
T Consensus 169 ~~~~~~ 174 (219)
T PLN03071 169 RKLAGD 174 (219)
T ss_pred HHHHcC
Confidence 888643
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.80 E-value=1.5e-19 Score=134.56 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=86.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++++.+|..||++++++|+|||+ +++++++.... |+..+... ..++|++|+|||+|+...
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 53 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSV----------VSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred EEECCCccchhhhhhhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhC
Confidence 699999999999999999999999999999 89999999875 66665443 247899999999998653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+ ..... . .-..+++.++..+ .+.+.+++|||++|.||+++|+.+
T Consensus 121 ~~~--~~~l----~~~~~--~----------~v~~~~~~~~a~~------------~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 121 PST--IEKL----AKNKQ--K----------PITPETGEKLARD------------LKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hhh--HHHh----hhccC--C----------CcCHHHHHHHHHH------------hCCcEEEEecCCCCCCHHHHHHHH
Confidence 211 1111 11110 0 0123445555221 123678899999999999999988
Q ss_pred HHH
Q psy12099 160 RDI 162 (174)
Q Consensus 160 ~~~ 162 (174)
.+.
T Consensus 171 ~~~ 173 (175)
T cd01874 171 ILA 173 (175)
T ss_pred HHH
Confidence 763
No 52
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.80 E-value=2.2e-19 Score=132.51 Aligned_cols=114 Identities=17% Similarity=0.397 Sum_probs=87.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+++++.+|.+||++++++|||+|. ++..++.++..|+..+.+.....+.|++||+||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~----------s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDS----------SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEEC----------CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 699999999999999999999999999999 7888999999999999887666789999999999997543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc------hhHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT------ENIRR 154 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~------~~i~~ 154 (174)
-. ..+.+.+ .. .. +.+ ..+..+++..|||++| .++.+
T Consensus 117 ~~---~~i~~~~---~l-------------------------~~---~~~---~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 117 LG---ADVIEYL---SL-------------------------EK---LVN---ENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred CH---HHHHHhc---Cc-------------------------cc---ccC---CCCceEEEEEeEceeCCCCccccCHHH
Confidence 11 1111110 00 00 000 1124578888999998 89999
Q ss_pred HHHHHHH
Q psy12099 155 VFNDCRD 161 (174)
Q Consensus 155 ~f~~~~~ 161 (174)
.|+||..
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999864
No 53
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=2.5e-19 Score=134.78 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=88.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~ 78 (174)
||||+|+++++.+|..||++++++|+|||+ ++.++++....|+..+.+... ..+.|++|+|||+|+..
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSI----------TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEECCCchhhHHHHHHHHHhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 699999999999999999999999999999 899999998888887754322 35789999999999864
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
++.. . .+.+..+.. ...+.++++||+++.||+++|++
T Consensus 121 ~~~v----~--------------------------~~~~~~~~~-------------~~~~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 121 EREV----S--------------------------TEEGAALAR-------------RLGCEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred cCcc----C--------------------------HHHHHHHHH-------------HhCCEEEEecCCCCCCHHHHHHH
Confidence 3211 0 111222211 12246789999999999999999
Q ss_pred HHHHHHHhh
Q psy12099 159 CRDIIQRMH 167 (174)
Q Consensus 159 ~~~~i~~~~ 167 (174)
+.+.+..+.
T Consensus 158 l~~~l~~~~ 166 (190)
T cd04144 158 LVRALRQQR 166 (190)
T ss_pred HHHHHHHhh
Confidence 999887554
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.80 E-value=2e-19 Score=131.42 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=86.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++.+++.+...|+..+.+.....+.|++|++||+|+..+.
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~ 122 (163)
T cd04176 53 ILDTAGTEQFASMRDLYIKNGQGFIVVYSL----------VNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122 (163)
T ss_pred EEECCCcccccchHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence 699999999999999999999999999999 8999999999998888765445689999999999985422
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . ..++..+.. ...+.++++||+++.|+.++|.++.
T Consensus 123 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 123 EV----S--------------------------SAEGRALAE-------------EWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred cc----C--------------------------HHHHHHHHH-------------HhCCEEEEecCCCCCCHHHHHHHHH
Confidence 11 0 111222210 1124567999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 643
No 55
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.80 E-value=2.6e-19 Score=129.88 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=86.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++++|+|+ ++..++.+...|+..+.+.....+.|++|++||+|+....
T Consensus 53 i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~----------~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 122 (162)
T cd04138 53 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART 122 (162)
T ss_pred EEECCCCcchHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce
Confidence 599999999999999999999999999999 7888999988888888765545678999999999986522
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..++..+.. ...+.++++||+++.||+++|+++.
T Consensus 123 ~~-------------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 123 VS-------------------------------SRQGQDLAK-------------SYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred ec-------------------------------HHHHHHHHH-------------HhCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 111222211 1224578999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
No 56
>PTZ00369 Ras-like protein; Provisional
Probab=99.80 E-value=3.7e-19 Score=133.76 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=89.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.+.....++|++|++||+|+..+.
T Consensus 57 i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~----------s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 57 ILDTAGQEEYSAMRDQYMRTGQGFLCVYSI----------TSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126 (189)
T ss_pred EEeCCCCccchhhHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 8999999999999888765445688999999999985432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+++..+.. ...+.++++||+++.||.++|.++.
T Consensus 127 ~i----~--------------------------~~~~~~~~~-------------~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 127 QV----S--------------------------TGEGQELAK-------------SFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred cc----C--------------------------HHHHHHHHH-------------HhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 11 0 112222211 1124678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.+.
T Consensus 164 ~~l~~~ 169 (189)
T PTZ00369 164 REIRKY 169 (189)
T ss_pred HHHHHH
Confidence 888754
No 57
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=3.5e-19 Score=131.81 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=86.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|..||++++++|+|+|. ++..++.+...|+..+++.....++|++|++||+|+.+..
T Consensus 62 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (173)
T cd04154 62 IWDVGGQKTLRPYWRNYFESTDALIWVVDS----------SDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL 131 (173)
T ss_pred EEECCCCHHHHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC
Confidence 699999999999999999999999999999 7888999999999998876555789999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+++++... . ...+.+.++++||++|.||+++|+++.
T Consensus 132 ~---~~~~~~~~~~~----------------------------------~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 132 S---EEEIREALELD----------------------------------K---ISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred C---HHHHHHHhCcc----------------------------------c---cCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 1 11111111100 0 123457889999999999999999986
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 172 ~ 172 (173)
T cd04154 172 D 172 (173)
T ss_pred c
Confidence 4
No 58
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.79 E-value=3.4e-19 Score=136.65 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=88.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~ 78 (174)
||||+||+.++.+|..||++++++|+|||+ ++.++++....|+..+.+... ..++|++||+||+|+.+
T Consensus 54 i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~----------t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 54 VWDIGGQSIGGKMLDKYIYGAHAVFLVYDV----------TNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred EEECCCcHHHHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 699999999999999999999999999999 899999999888888765432 24578999999999964
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
++.. ..+.+..+.. ...+.++++||++|+||+++|++
T Consensus 124 ~~~v------------------------------~~~~~~~~~~-------------~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 124 NRTV------------------------------KDDKHARFAQ-------------ANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred cccc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHH
Confidence 3211 0122222211 12256778999999999999999
Q ss_pred HHHHHHHhh
Q psy12099 159 CRDIIQRMH 167 (174)
Q Consensus 159 ~~~~i~~~~ 167 (174)
+.+.+....
T Consensus 161 l~~~l~~~~ 169 (215)
T cd04109 161 LAAELLGVD 169 (215)
T ss_pred HHHHHHhcc
Confidence 999987653
No 59
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.79 E-value=4.5e-19 Score=130.52 Aligned_cols=67 Identities=22% Similarity=0.500 Sum_probs=60.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+||++||++++.+|.+||++++++|+|+|. ++..++.....|+..+.... .++|++|++||+|+..+
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~----------t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDS----------ADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAA 114 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCC
Confidence 699999999999999999999999999999 78889999999999887653 58999999999998654
No 60
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.79 E-value=3.5e-19 Score=132.40 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=86.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||+.++.+|..|+++++++|+|||+ +++++|.+.. .|+..+... ..+.|++|+|||+|+...
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 53 LWDTAGQEDYDRLRPLSYPQTDVFLICFSL----------VSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 120 (174)
T ss_pred EEECCCchhhhhhhhhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccC
Confidence 699999999999999999999999999999 8999999986 466665443 257999999999999643
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. ..++.+.. . . .-..+++.++..+ .+.+.+++|||+++.||+++|+.+
T Consensus 121 ~~~--~~~~~~~~---~---~----------~v~~~~~~~~~~~------------~~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 121 KDT--IEKLKEKK---L---T----------PITYPQGLAMAKE------------IGAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred hhh--HHHHhhcc---C---C----------CCCHHHHHHHHHH------------cCCcEEEEecccccCCHHHHHHHH
Confidence 321 11111110 0 0 0123445554321 122467899999999999999998
Q ss_pred HHH
Q psy12099 160 RDI 162 (174)
Q Consensus 160 ~~~ 162 (174)
.+.
T Consensus 171 ~~~ 173 (174)
T cd01871 171 IRA 173 (174)
T ss_pred HHh
Confidence 763
No 61
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.79 E-value=6.9e-19 Score=131.85 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=86.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++|+.+|..|+++++++|+|||+ ++..++.++..|+..+.+.. ....| +|+|||+|+..+.
T Consensus 53 iwDt~G~~~~~~~~~~~~~~a~~iilv~D~----------t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 53 IWDLGGQREFINMLPLVCNDAVAILFMFDL----------TRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred EEeCCCchhHHHhhHHHCcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccc
Confidence 699999999999999999999999999999 89999999999999886643 23566 5789999996421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. . .-. ...+++.+|.. .....+++|||+++.||+++|+++.
T Consensus 121 ~~--~-~~~----------------------~~~~~~~~~a~-------------~~~~~~~e~SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 121 PP--E-EQE----------------------EITKQARKYAK-------------AMKAPLIFCSTSHSINVQKIFKIVL 162 (182)
T ss_pred cc--h-hhh----------------------hhHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 00 0 000 00122333311 1225678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.++.
T Consensus 163 ~~l~~ 167 (182)
T cd04128 163 AKAFD 167 (182)
T ss_pred HHHHh
Confidence 98875
No 62
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=5.6e-19 Score=135.28 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=90.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|..|+++++++|+|||+ ++.++++++..|+..+.+......+|++|++||+|+...+
T Consensus 56 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~ 125 (211)
T cd04111 56 LWDTAGQERFRSITRSYYRNSVGVLLVFDI----------TNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR 125 (211)
T ss_pred EEeCCcchhHHHHHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc
Confidence 699999999999999999999999999999 8999999999999998765444568899999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||.++|+++.
T Consensus 126 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 126 QV------------------------------TREEAEKLAK-------------DLGMKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred cc------------------------------CHHHHHHHHH-------------HhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 0112222211 1236788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.+.
T Consensus 163 ~~~~~~ 168 (211)
T cd04111 163 QEIYER 168 (211)
T ss_pred HHHHHH
Confidence 988765
No 63
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=1e-18 Score=130.71 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=88.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|. ++.+++.....|+..+.......+.|++|++||+|+....
T Consensus 56 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~ 125 (183)
T cd04152 56 FWDVGGQEKLRPLWKSYTRCTDGIVFVVDS----------VDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL 125 (183)
T ss_pred EEECCCcHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC
Confidence 699999999999999999999999999999 7888888888888887765445678999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+..... ++.. .....+.++++||++++|++++|+++.
T Consensus 126 -~--~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~SA~~~~gi~~l~~~l~ 166 (183)
T cd04152 126 -S--VSEVEKLLA----------------------------------LHEL--SASTPWHVQPACAIIGEGLQEGLEKLY 166 (183)
T ss_pred -C--HHHHHHHhC----------------------------------cccc--CCCCceEEEEeecccCCCHHHHHHHHH
Confidence 1 011111111 0000 112235678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++.+
T Consensus 167 ~~l~~~ 172 (183)
T cd04152 167 EMILKR 172 (183)
T ss_pred HHHHHH
Confidence 988643
No 64
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.79 E-value=6e-19 Score=130.01 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=87.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.+..++.++|++++++|+|+|+ ++.+++.....|+..+.+.. .++|+++++||+|+....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 53 VWDTAGQEKFGGLRDGYYIGGQCAIIMFDV----------TSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred EEECCCChhhccccHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccccc
Confidence 699999999999999999999999999999 89999999988988886653 389999999999996322
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.++. ..+.+.+++|||+++.||+++|+++.
T Consensus 121 ~~--------------------------------~~~~~~~-------------~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 121 VK--------------------------------AKQITFH-------------RKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred CC--------------------------------HHHHHHH-------------HHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 11 0111111 12346788999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+++
T Consensus 156 ~~~~~ 160 (166)
T cd00877 156 RKLLG 160 (166)
T ss_pred HHHHh
Confidence 99875
No 65
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=5e-19 Score=133.07 Aligned_cols=124 Identities=12% Similarity=0.169 Sum_probs=89.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||+.++.+|..||++++++|+|||+ ++.++++... .|+..+... ..+.|++||+||+|+..+
T Consensus 52 i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv----------~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 52 LWDTAGQEEFDRLRSLSYADTDVIMLCFSV----------DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREA 119 (189)
T ss_pred EEECCCChhccccccccccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccC
Confidence 699999999999999999999999999999 8999998875 577776543 247899999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+. .... ..-..+++.++... .+.+.+++|||+++.||+++|.++
T Consensus 120 ~~~--~~~~~----~~~~------------~~v~~~~~~~~~~~------------~~~~~~~e~SAk~~~~v~e~f~~l 169 (189)
T cd04134 120 RNE--RDDLQ----RYGK------------HTISYEEGLAVAKR------------INALRYLECSAKLNRGVNEAFTEA 169 (189)
T ss_pred hhh--HHHHh----hccC------------CCCCHHHHHHHHHH------------cCCCEEEEccCCcCCCHHHHHHHH
Confidence 322 10110 0000 00012334333211 123567899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.++..
T Consensus 170 ~~~~~~~ 176 (189)
T cd04134 170 ARVALNV 176 (189)
T ss_pred HHHHhcc
Confidence 9988754
No 66
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.79 E-value=6.9e-19 Score=129.18 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=87.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..++++++++++|+|+ ++.++++....|+..+... ...+.|+++++||+|+.+++
T Consensus 54 l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 54 IWDTAGQERYRTITTAYYRGAMGFILMYDI----------TNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred EEECCChHHHHHHHHHHccCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCccc
Confidence 699999999999999999999999999999 7889999999998887543 33578999999999996543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.++.. ...+.++++||+++.||.++|+++.
T Consensus 123 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 123 VV------------------------------SSERGRQLAD-------------QLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 0122222211 1224678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87654
No 67
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=7.7e-19 Score=127.79 Aligned_cols=111 Identities=20% Similarity=0.294 Sum_probs=84.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL--RTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~--~~~~iilv~NK~Dl~~ 78 (174)
+|||+|+++++.+|..||++++++|||+|. ++..++..+..|+..+.+.+.. .+.|++|++||+|+..
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDS----------SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeC----------CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 699999999999999999999999999999 7888998888888888776433 4789999999999864
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
+... ..+.+.+. +.. .....+.++++||+++.||+++|++
T Consensus 119 ~~~~---~~~~~~l~----------------------------------~~~---~~~~~~~~~~~Sa~~g~gv~~~~~~ 158 (162)
T cd04157 119 ALTA---VKITQLLG----------------------------------LEN---IKDKPWHIFASNALTGEGLDEGVQW 158 (162)
T ss_pred CCCH---HHHHHHhC----------------------------------Ccc---ccCceEEEEEeeCCCCCchHHHHHH
Confidence 3210 11111100 000 1123466789999999999999999
Q ss_pred HHH
Q psy12099 159 CRD 161 (174)
Q Consensus 159 ~~~ 161 (174)
+.+
T Consensus 159 l~~ 161 (162)
T cd04157 159 LQA 161 (162)
T ss_pred Hhc
Confidence 865
No 68
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=7.6e-19 Score=128.72 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=85.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||++|+++++.+|..|+++++++++|||+ ++.+++++...|+..+.+. ...+.|+++++||+|+..++
T Consensus 53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 53 IWDTAGQERYQTITKQYYRRAQGIFLVYDI----------SSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKR 121 (161)
T ss_pred EEeCCCcHhHHhhHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 8999999999999887654 33578999999999986543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. .....+++|||+++.||+++|.++.
T Consensus 122 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 122 QV------------------------------GDEQGNKLAK-------------EYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 0123333321 1124568999999999999999997
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 69
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.78 E-value=9.1e-19 Score=135.11 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=88.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||+.|+.+|+.||++++++|+|||+ ++..+|+.+..+|...+.. ..+++|++|||||+|+....
T Consensus 53 iwDt~G~e~~~~l~~~~~~~~d~illvfdi----------s~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 53 MWDTSGSSYYDNVRPLAYPDSDAVLICFDI----------SRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred EEeCCCcHHHHHHhHHhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccch
Confidence 699999999999999999999999999999 8999999997655554443 23679999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh-HHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN-IRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~-i~~~f~~~ 159 (174)
-. +...-. .. ..|. ..+++..+... ..-+.+++|||+++.| |+++|..+
T Consensus 122 ~~-----~~~~~~-~~--~~pI----------s~e~g~~~ak~------------~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 122 AT-----LRELSK-QR--LIPV----------THEQGTVLAKQ------------VGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred hh-----hhhhhh-cc--CCcc----------CHHHHHHHHHH------------cCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 11 111000 00 0111 23344444211 1224788999999986 99999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
....+.+
T Consensus 172 ~~~~~~~ 178 (222)
T cd04173 172 TVASLGR 178 (222)
T ss_pred HHHHHhc
Confidence 9987765
No 70
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.78 E-value=7.3e-19 Score=129.35 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=84.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW---LRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~---~~~~~iilv~NK~Dl~ 77 (174)
|||++||++++.+|..|+++++++|+|||+ ++.+++.....|...+..... ..++|++|++||+|+.
T Consensus 58 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 58 IWDTAGQERFRSLRTPFYRGSDCCLLTFAV----------DDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEeCCChHHHHHhHHHHhcCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 699999999999999999999999999999 889999998888887765432 3568999999999986
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
...+. .+++.++..+ .....++++||+++.||.++|+
T Consensus 128 ~~~~~-------------------------------~~~~~~~~~~------------~~~~~~~e~Sa~~~~~v~~~~~ 164 (170)
T cd04116 128 ERQVS-------------------------------TEEAQAWCRE------------NGDYPYFETSAKDATNVAAAFE 164 (170)
T ss_pred ccccC-------------------------------HHHHHHHHHH------------CCCCeEEEEECCCCCCHHHHHH
Confidence 32111 1223333211 1124678999999999999999
Q ss_pred HHHHH
Q psy12099 158 DCRDI 162 (174)
Q Consensus 158 ~~~~~ 162 (174)
.+.+.
T Consensus 165 ~~~~~ 169 (170)
T cd04116 165 EAVRR 169 (170)
T ss_pred HHHhh
Confidence 98864
No 71
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=1.5e-18 Score=131.59 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=89.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||++||++++.+|..|+++++++|+|+|+ ++.+++..+..|+..+... ....|++|++||+|+...+
T Consensus 59 l~D~~G~~~~~~~~~~~~~~a~~iilv~D~----------~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 59 IWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred EEeCCCchhHHHHHHHHhCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 8899999999999887654 2578999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||.++|+++.
T Consensus 127 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 127 VV------------------------------ETEDAYKFAG-------------QMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCcCHHHHHHHHH
Confidence 11 0122222221 1125678999999999999999999
Q ss_pred HHHHHhhh
Q psy12099 161 DIIQRMHL 168 (174)
Q Consensus 161 ~~i~~~~~ 168 (174)
+.++..+.
T Consensus 164 ~~~~~~~~ 171 (199)
T cd04110 164 ELVLRAKK 171 (199)
T ss_pred HHHHHhhh
Confidence 99987543
No 72
>KOG0075|consensus
Probab=99.77 E-value=1.7e-18 Score=122.96 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=94.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||+|||.+||++|..|++++++++||+|. .+++.+..+...+.+++..+....+|++++|||.|++.+.
T Consensus 69 lwD~gGq~rfrsmWerycR~v~aivY~VDa----------ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 69 LWDLGGQPRFRSMWERYCRGVSAIVYVVDA----------ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred EEecCCCccHHHHHHHHhhcCcEEEEEeec----------CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 699999999999999999999999999999 6899999999999999999999999999999999998753
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. ..+ |.+. .+. ....+.+-.+..|+++..||+.+.+|+.
T Consensus 139 ~~---~~l--------------------------------i~rm--gL~---sitdREvcC~siScke~~Nid~~~~Wli 178 (186)
T KOG0075|consen 139 SK---IAL--------------------------------IERM--GLS---SITDREVCCFSISCKEKVNIDITLDWLI 178 (186)
T ss_pred cH---HHH--------------------------------HHHh--Ccc---ccccceEEEEEEEEcCCccHHHHHHHHH
Confidence 22 111 1100 011 1456889999999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+..
T Consensus 179 ~hs 181 (186)
T KOG0075|consen 179 EHS 181 (186)
T ss_pred HHh
Confidence 754
No 73
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.77 E-value=2.1e-18 Score=126.46 Aligned_cols=111 Identities=20% Similarity=0.185 Sum_probs=88.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+++++.+|..|+++++++|+|+|+ ++.+++.+...|+..+.... ..+.|+++++||+|+...+
T Consensus 55 i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 55 IWDTAGQERFRTITSSYYRGAHGIIIVYDV----------TDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred EEECCCcHhHHHHHHHHhCcCCEEEEEEEC----------cCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhccccc
Confidence 699999999999999999999999999999 88999999999998875542 3568999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||.++|..+.
T Consensus 124 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 124 VV------------------------------DYSEAQEFAD-------------ELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCeEEEEECCCCcCHHHHHHHHH
Confidence 11 1222333321 1235678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01869 161 REIKK 165 (166)
T ss_pred HHHHh
Confidence 88763
No 74
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=1.8e-18 Score=125.99 Aligned_cols=111 Identities=20% Similarity=0.333 Sum_probs=83.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....++..+++.....+.|++|++||+|+.+..
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 116 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDS----------TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL 116 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC
Confidence 699999999999999999999999999999 7777888777888777766555679999999999986431
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+...+ . ... .....+.++++||+++.||+++|+++.
T Consensus 117 ~~---~~i~~~~---~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 117 SE---AEISEKL---G-------------------------------LSE---LKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CH---HHHHHHh---C-------------------------------ccc---cCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 00 0111110 0 000 112345788999999999999999987
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 157 ~ 157 (158)
T cd04151 157 N 157 (158)
T ss_pred c
Confidence 5
No 75
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.77 E-value=2.3e-18 Score=126.61 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=88.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++++..+|..++++++++|+|+|+ ++..++.+...|+..+.+.. ..+.|++|++||+|+.+.+
T Consensus 56 l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 56 IWDTAGQERFRTITTAYYRGAMGIILVYDI----------TDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred EEeCCchHHHHHHHHHHhCCCCEEEEEEEC----------cCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 78999999999988876542 3578999999999997532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. .....++++||+++.||+++|+++.
T Consensus 125 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 125 VV------------------------------SKEEGEALAD-------------EYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 1122233221 1224678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+++
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 99875
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=1.2e-18 Score=132.00 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=81.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||+. .+...||++++++|+|||+ +++.+|+.... |...+... .+++|++|+|||+||...
T Consensus 70 iwDTaG~~~--~~~~~~~~~ad~iilv~d~----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~ 135 (195)
T cd01873 70 LWDTFGDHD--KDRRFAYGRSDVVLLCFSI----------ASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYA 135 (195)
T ss_pred EEeCCCChh--hhhcccCCCCCEEEEEEEC----------CChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhcccc
Confidence 699999985 3566799999999999999 89999999874 76666443 247899999999998642
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
.............+.... ...-..+++.++.. +..+.+++|||+++.||+++|+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~-----------~~~V~~~e~~~~a~-------------~~~~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 136 DLDEVNRARRPLARPIKN-----------ADILPPETGRAVAK-------------ELGIPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred ccchhhhccccccccccc-----------CCccCHHHHHHHHH-------------HhCCEEEEcCCCCCCCHHHHHHHH
Confidence 110000000000000000 00112445666532 233578899999999999999988
Q ss_pred HHH
Q psy12099 160 RDI 162 (174)
Q Consensus 160 ~~~ 162 (174)
.+.
T Consensus 192 ~~~ 194 (195)
T cd01873 192 IRA 194 (195)
T ss_pred HHh
Confidence 753
No 77
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=2.9e-18 Score=124.76 Aligned_cols=112 Identities=26% Similarity=0.434 Sum_probs=85.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++..|..++++++++|+|+|. ++..++.+...++..+++.....+.|++|++||+|+....
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 117 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDS----------SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL 117 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc
Confidence 699999999999999999999999999999 7888899999999998877666789999999999985321
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+...+ +. ..+ ...+.+.+.+|||++++||+++|++|.
T Consensus 118 -~--~~~i~~~~---~~--------------------~~~-------------~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 118 -T--AEEITRRF---KL--------------------KKY-------------CSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred -C--HHHHHHHc---CC--------------------ccc-------------CCCCcEEEEecccccCCChHHHHHHHh
Confidence 0 01111110 00 000 122346788999999999999999886
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
.
T Consensus 159 ~ 159 (160)
T cd04156 159 S 159 (160)
T ss_pred c
Confidence 4
No 78
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.77 E-value=2.4e-18 Score=125.62 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=87.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|..++++++++|+|+|+ ++.+++++...|+..+.+.....+.|+++++||+|+..++
T Consensus 52 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 52 ILDTAGQEEFSAMRDQYMRTGEGFLLVYSI----------TDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred EEECCCcccchHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 8899999999998888765444578999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. ...+.+.++||+++.||+++|+++.
T Consensus 122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 122 VV------------------------------STEEGKELAR-------------QWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred eE------------------------------cHHHHHHHHH-------------HcCCEEEEeecCCCCCHHHHHHHHH
Confidence 11 0112222221 1125678999999999999999999
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 8764
No 79
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=3.1e-18 Score=128.06 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=88.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++++.+|..++++++++|+|+|+ ++.+++++... |+..+... ..+.|++|++||+|+..+
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 53 LWDTAGQEEYDRLRPLSYPDVDVLLICYAV----------DNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred EEECCCchhHHHHHHHhCCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhC
Confidence 699999999999999999999999999999 88999998864 66665432 357899999999999654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~ 158 (174)
... ...+ ..+++.++... ..+ .++++||+++.||.++|..
T Consensus 121 ~~~--~~~v------------------------~~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 121 KNL--DRKV------------------------TPAQAESVAKK-------------QGAFAYLECSAKTMENVEEVFDT 161 (187)
T ss_pred ccc--cCCc------------------------CHHHHHHHHHH-------------cCCcEEEEccCCCCCCHHHHHHH
Confidence 311 0000 12233443211 112 5789999999999999999
Q ss_pred HHHHHHHhhh
Q psy12099 159 CRDIIQRMHL 168 (174)
Q Consensus 159 ~~~~i~~~~~ 168 (174)
+.+.+++...
T Consensus 162 l~~~~~~~~~ 171 (187)
T cd04132 162 AIEEALKKEG 171 (187)
T ss_pred HHHHHHhhhh
Confidence 9999987643
No 80
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.76 E-value=2.5e-18 Score=125.37 Aligned_cols=110 Identities=20% Similarity=0.177 Sum_probs=86.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.+.....+.|++|++||+|+..++
T Consensus 54 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~ 123 (164)
T cd04145 54 ILDTAGQEEFSAMREQYMRTGEGFLLVFSV----------TDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR 123 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence 699999999999999999999999999999 7899999999999888765444578999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.++.. ...+.+.++||+++.||+++|+++.
T Consensus 124 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 124 KV------------------------------SREEGQELAR-------------KLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred ee------------------------------cHHHHHHHHH-------------HcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 11 0112223321 1224578999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 754
No 81
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.76 E-value=2.3e-18 Score=125.58 Aligned_cols=111 Identities=15% Similarity=0.197 Sum_probs=87.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC----CCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW----LRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~----~~~~~iilv~NK~Dl 76 (174)
+|||+|++.++.+|..++++++++|+|+|+ ++++++.....|+..+.+... ..+.|+++++||+|+
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 53 FFDLSGHPEYLEVRNEFYKDTQGVLLVYDV----------TDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred EEECCccHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 699999999999999999999999999999 788999998888888865432 256899999999998
Q ss_pred hhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099 77 LAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF 156 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f 156 (174)
..++.. ..+++..+.. ...+.++++||+++.||.++|
T Consensus 123 ~~~~~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 123 TKHRAV------------------------------SEDEGRLWAE-------------SKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred cccccc------------------------------CHHHHHHHHH-------------HcCCeEEEEECCCCCCHHHHH
Confidence 642211 1122222211 122567899999999999999
Q ss_pred HHHHHHHH
Q psy12099 157 NDCRDIIQ 164 (174)
Q Consensus 157 ~~~~~~i~ 164 (174)
+++.+.++
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998876
No 82
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.76 E-value=2.8e-18 Score=127.25 Aligned_cols=111 Identities=21% Similarity=0.355 Sum_probs=85.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..||++++++|||+|. ++.+++.....++..+++.....++|++|++||+|+....
T Consensus 63 l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~----------s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~ 132 (174)
T cd04153 63 MWDIGGQESLRSSWNTYYTNTDAVILVIDS----------TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132 (174)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC
Confidence 699999999999999999999999999999 7888999998889988877666789999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.+. .+ ... ...+.+.+.++||+++.||+++|+++.
T Consensus 133 -~--~~~i~~~---l~-------------------------------~~~---~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 133 -T--PAEISES---LG-------------------------------LTS---IRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred -C--HHHHHHH---hC-------------------------------ccc---ccCCceEEEecccCCCCCHHHHHHHHh
Confidence 1 0111111 00 000 122446788999999999999999986
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
.
T Consensus 173 ~ 173 (174)
T cd04153 173 S 173 (174)
T ss_pred c
Confidence 4
No 83
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.76 E-value=3.7e-18 Score=125.96 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=87.1
Q ss_pred CeeCCCCchhh-hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDER-RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r-~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++ .+|.+|+++++++|+|+|+ ++..++.....|+..+.......++|++|++||+|+...
T Consensus 55 i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDV----------TNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred EEeCCChHHHHHhhHHHhhcCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 69999999998 5899999999999999999 899999999999988876554568999999999998754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc---chhHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD---TENIRRVF 156 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d---~~~i~~~f 156 (174)
+.. + .+.+..+.. ...+.+++|||++ +.||+++|
T Consensus 125 ~~~----~--------------------------~~~~~~~~~-------------~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 125 IQV----P--------------------------TDLAQRFAD-------------AHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred cCC----C--------------------------HHHHHHHHH-------------HcCCcEEEEeccCCcCCCCHHHHH
Confidence 311 0 112222211 1236678999999 99999999
Q ss_pred HHHHHHH
Q psy12099 157 NDCRDII 163 (174)
Q Consensus 157 ~~~~~~i 163 (174)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 84
>KOG0076|consensus
Probab=99.76 E-value=6.7e-19 Score=128.08 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=96.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
.||.|||+..|++|..||..++++||++|. ++++||+++...|+.++.++...++|+++++||+|+.++.
T Consensus 73 fwdlgGQe~lrSlw~~yY~~~H~ii~viDa----------~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~ 142 (197)
T KOG0076|consen 73 FWDLGGQESLRSLWKKYYWLAHGIIYVIDA----------TDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM 142 (197)
T ss_pred EEEcCChHHHHHHHHHHHHHhceeEEeecC----------CCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh
Confidence 499999999999999999999999999999 8999999999999999999999999999999999998765
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. ..+...|..- +. ...+...+..+||.+|+||++...|+.
T Consensus 143 ~~---~El~~~~~~~-------------------------------e~-----~~~rd~~~~pvSal~gegv~egi~w~v 183 (197)
T KOG0076|consen 143 EA---AELDGVFGLA-------------------------------EL-----IPRRDNPFQPVSALTGEGVKEGIEWLV 183 (197)
T ss_pred hH---HHHHHHhhhh-------------------------------hh-----cCCccCccccchhhhcccHHHHHHHHH
Confidence 32 2333333210 00 234456667789999999999999988
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
..+-++
T Consensus 184 ~~~~kn 189 (197)
T KOG0076|consen 184 KKLEKN 189 (197)
T ss_pred HHHhhc
Confidence 887655
No 85
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.76 E-value=4.5e-18 Score=125.91 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=86.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++|+.+|..||++++++|+|+|+ ++..++.....|+..+.+.....++|+++|+||.|+....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 53 LWDTAGQERFKCIASTYYRGAQAIIIVFDL----------TDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred EEeCCChHHHHhhHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 699999999999999999999999999999 7889999999999988765444567899999999985431
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .. ..+.+..+.. .....+.++||+++.||.++|+.+.
T Consensus 123 ~~----~~------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 123 QY----AL------------------------MEQDAIKLAA-------------EMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred cc----cc------------------------cHHHHHHHHH-------------HcCCeEEEEECCCCCCHHHHHHHHH
Confidence 10 00 0112222211 1124567999999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
..+.
T Consensus 162 ~~~~ 165 (170)
T cd04108 162 ALTF 165 (170)
T ss_pred HHHH
Confidence 8764
No 86
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.76 E-value=3.3e-18 Score=126.21 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=88.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+||+.++.+|..++++++++|+|||+ ++.++++.... |+..+... ..+.|++|++||+|+..+
T Consensus 50 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 50 LWDTAGQEDYDRLRPLSYPDTDVFLICFSV----------DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLRED 117 (174)
T ss_pred EEECCCCcccchhchhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhC
Confidence 699999999999999999999999999999 88999998864 77766543 357999999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.. ... ..-..+++..+... .....++++||+++.||+++|+.+
T Consensus 118 ~~~-----~~~~~~-~~~------------~~v~~~~~~~~~~~------------~~~~~~~e~Sa~~~~~v~~lf~~l 167 (174)
T smart00174 118 KST-----LRELSK-QKQ------------EPVTYEQGEALAKR------------IGAVKYLECSALTQEGVREVFEEA 167 (174)
T ss_pred hhh-----hhhhhc-ccC------------CCccHHHHHHHHHH------------cCCcEEEEecCCCCCCHHHHHHHH
Confidence 321 111111 100 00123344444221 112357899999999999999999
Q ss_pred HHHHHH
Q psy12099 160 RDIIQR 165 (174)
Q Consensus 160 ~~~i~~ 165 (174)
.+.+++
T Consensus 168 ~~~~~~ 173 (174)
T smart00174 168 IRAALN 173 (174)
T ss_pred HHHhcC
Confidence 988754
No 87
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=4.9e-18 Score=127.82 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=89.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++..|..|+++++++|+|+|+ ++.+++++...|+..+... ...+.|++|++||+|+..++
T Consensus 54 i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~----------~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 54 IWDTAGQERFRSVTHAYYRDAHALLLLYDI----------TNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EEeCCCcHHHHHhhHHHccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhcc
Confidence 699999999999999999999999999999 7889999998888887654 23478999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+++..+. .. ..+.++++||+++.|++++|.++.
T Consensus 123 ~~----~--------------------------~~~~~~l~-~~------------~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 123 VV----K--------------------------REDGERLA-KE------------YGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred cc----C--------------------------HHHHHHHH-HH------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 0 11122221 11 124678999999999999999999
Q ss_pred HHHHHhhhh
Q psy12099 161 DIIQRMHLR 169 (174)
Q Consensus 161 ~~i~~~~~~ 169 (174)
+.+......
T Consensus 160 ~~~~~~~~~ 168 (191)
T cd04112 160 KELKHRKYE 168 (191)
T ss_pred HHHHHhccc
Confidence 999876543
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=9.5e-18 Score=122.80 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=85.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|..|+++++++|+|+|+ ++..++.....|+..+.+. ..+.|+++++||+|+....
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~ 120 (161)
T cd04124 53 FWDTAGQERFQTMHASYYHKAHACILVFDV----------TRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV 120 (161)
T ss_pred EEeCCCchhhhhhhHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH
Confidence 699999999999999999999999999999 7888988888888887553 2468999999999984321
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. +++.++.. ...+.++++||+++.|+.++|+.+.
T Consensus 121 -~--------------------------------~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 121 -T--------------------------------QKKFNFAE-------------KHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred -H--------------------------------HHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1 01111210 1124577899999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++++
T Consensus 155 ~~~~~~ 160 (161)
T cd04124 155 KLAVSY 160 (161)
T ss_pred HHHHhc
Confidence 988764
No 89
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.75 E-value=5.1e-18 Score=124.54 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=82.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|+++++.+|..++++++++|+|+|+ ++..++++...|++.+.+.. ...++|++|++||+|+..
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 53 ITDTTGSHQFPAMQRLSISKGHAFILVYSV----------TSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred EEECCCCCcchHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 699999999999999999999999999999 88999999888887664322 235789999999999854
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
.+.. ..+.+..+.. ...+.++++||+++.||+++|++
T Consensus 123 ~~~v------------------------------~~~~~~~~~~-------------~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 123 KREV------------------------------SSNEGAACAT-------------EWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred cCee------------------------------cHHHHHHHHH-------------HhCCcEEEeecCCCCCHHHHHHH
Confidence 2110 0112222211 12245789999999999999999
Q ss_pred HHH
Q psy12099 159 CRD 161 (174)
Q Consensus 159 ~~~ 161 (174)
+.+
T Consensus 160 l~~ 162 (165)
T cd04140 160 LLN 162 (165)
T ss_pred HHh
Confidence 864
No 90
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.75 E-value=3.5e-18 Score=125.25 Aligned_cols=107 Identities=24% Similarity=0.326 Sum_probs=81.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||+. ..|+++++++|+|||+ +++++|+++..|+..+.......++|++|+|||.|+....
T Consensus 51 i~D~~g~~~-----~~~~~~~~~~ilv~d~----------~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 51 IRDEGGAPD-----AQFASWVDAVIFVFSL----------ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred EEECCCCCc-----hhHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 699999985 3578999999999999 8999999999999998776555779999999999985321
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
...+ ..+++.++..+ .+.+.+++|||+++.||+++|..+.
T Consensus 116 ----~~~v------------------------~~~~~~~~~~~------------~~~~~~~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 116 ----PRVI------------------------DDARARQLCAD------------MKRCSYYETCATYGLNVERVFQEAA 155 (158)
T ss_pred ----Cccc------------------------CHHHHHHHHHH------------hCCCcEEEEecCCCCCHHHHHHHHH
Confidence 1111 12234444221 1236788999999999999999987
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 156 ~~ 157 (158)
T cd04103 156 QK 157 (158)
T ss_pred hh
Confidence 54
No 91
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.75 E-value=5.7e-18 Score=123.41 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=90.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||++|++++..++..++++++++|+|||+ ++.++++....|+..+..... .++|++|+|||.|+..++
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~----------~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDV----------TDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEET----------TBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGS
T ss_pred cccccccccccccccccccccccccccccc----------ccccccccccccccccccccc-ccccceeeeccccccccc
Confidence 699999999999999999999999999999 899999999999998866543 568999999999997632
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +.+++.++.. .....+.++||+++.||.++|..+.
T Consensus 121 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 121 EV------------------------------SVEEAQEFAK-------------ELGVPYFEVSAKNGENVKEIFQELI 157 (162)
T ss_dssp SS------------------------------CHHHHHHHHH-------------HTTSEEEEEBTTTTTTHHHHHHHHH
T ss_pred cc------------------------------hhhHHHHHHH-------------HhCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 1233444432 1227788999999999999999999
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.|+
T Consensus 158 ~~i~ 161 (162)
T PF00071_consen 158 RKIL 161 (162)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9886
No 92
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.75 E-value=6.7e-18 Score=126.50 Aligned_cols=123 Identities=20% Similarity=0.357 Sum_probs=90.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++.+|.+|+++++++|+|+|+ ++.+++.+...++..+++.....+.|+++++||+|+...
T Consensus 67 l~D~~G~~~~~~~~~~~~~~ad~iilV~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~- 135 (190)
T cd00879 67 TFDLGGHEQARRLWKDYFPEVDGIVFLVDA----------ADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA- 135 (190)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEEEEC----------CcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-
Confidence 599999999999999999999999999999 788889989999999987666678999999999998642
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. ...+++++..+.-.. .+...+.. ...+.+.+++|||++++||.++|+++.
T Consensus 136 ~~--~~~~~~~~~~~~~~~-----------------------~~~~~~~~---~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 136 VS--EEELRQALGLYGTTT-----------------------GKGVSLKV---SGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred cC--HHHHHHHhCcccccc-----------------------cccccccc---cCceeEEEEEeEecCCCChHHHHHHHH
Confidence 12 233444443322100 00000000 112446789999999999999999997
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
..
T Consensus 188 ~~ 189 (190)
T cd00879 188 QY 189 (190)
T ss_pred hh
Confidence 64
No 93
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=8.1e-18 Score=126.04 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=89.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+++++.+|.+||++++++|||+|+ ++..++.++..++..+++.....++|++|++||+|+....
T Consensus 65 ~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~----------~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 134 (184)
T smart00178 65 TFDLGGHQQARRLWKDYFPEVNGIVYLVDA----------YDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134 (184)
T ss_pred EEECCCCHHHHHHHHHHhCCCCEEEEEEEC----------CcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC
Confidence 599999999999999999999999999999 7888999999999998876666789999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.+.+.-... .... .. ...+.+.++.+||+++.|+.++++++.
T Consensus 135 -~--~~~i~~~l~l~~~--~~~~-------------------------~~---~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 135 -S--EDELRYALGLTNT--TGSK-------------------------GK---VGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred -C--HHHHHHHcCCCcc--cccc-------------------------cc---cCCceeEEEEeecccCCChHHHHHHHH
Confidence 1 1223322221110 0000 00 123567899999999999999999997
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 182 ~~ 183 (184)
T smart00178 182 QY 183 (184)
T ss_pred hh
Confidence 64
No 94
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.75 E-value=9e-18 Score=123.66 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=88.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||++|+++++.++..|+++++++|+|+|+ ++.+++.....|+..+.... .+++|++|++||.|+..+.
T Consensus 57 i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~ 125 (168)
T cd01866 57 IWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRR 125 (168)
T ss_pred EEECCCcHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 78999999999998886543 3578999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.+.++||+++.||.++|.++.
T Consensus 126 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 126 EV------------------------------SYEEGEAFAK-------------EHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 1222333321 1235678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+++
T Consensus 163 ~~~~~ 167 (168)
T cd01866 163 KEIYE 167 (168)
T ss_pred HHHHh
Confidence 88764
No 95
>PLN03110 Rab GTPase; Provisional
Probab=99.74 E-value=1.3e-17 Score=128.11 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=88.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..|+++++++|+|+|+ ++..+++....|+..+.+. ...++|++|++||+|+...+
T Consensus 65 l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~ 133 (216)
T PLN03110 65 IWDTAGQERYRAITSAYYRGAVGALLVYDI----------TKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLR 133 (216)
T ss_pred EEECCCcHHHHHHHHHHhCCCCEEEEEEEC----------CChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhccccc
Confidence 699999999999999999999999999999 8899999988898887654 23578999999999985432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. ...+.+++|||+++.||.++|+.+.
T Consensus 134 ~~------------------------------~~~~~~~l~~-------------~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 134 SV------------------------------AEEDGQALAE-------------KEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 0111222210 1236788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.+.
T Consensus 171 ~~i~~~ 176 (216)
T PLN03110 171 LEIYHI 176 (216)
T ss_pred HHHHHH
Confidence 888764
No 96
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.74 E-value=1.1e-17 Score=122.48 Aligned_cols=113 Identities=23% Similarity=0.420 Sum_probs=87.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.++.+|..++++++++|+|+|. ++.+++.....++..+++.....+.|++|++||+|+....
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~ 123 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDS----------TDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL 123 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEEC----------chHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC
Confidence 699999999999999999999999999999 6777889999999998887666789999999999986531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.+++..+.. . .....+.++.+||+++.|++++|+++.
T Consensus 124 -~--~~~~~~~~~~~~~-----------------------------~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 124 -S--VEEIKEVFQDKAE-----------------------------E------IGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred -C--HHHHHHHhccccc-----------------------------c------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 1 1122222222110 0 112346788999999999999999987
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 166 ~ 166 (167)
T cd04160 166 E 166 (167)
T ss_pred c
Confidence 5
No 97
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=1.7e-17 Score=124.40 Aligned_cols=112 Identities=19% Similarity=0.139 Sum_probs=88.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++.+|..++++++++|+|||+ ++..++.....|+..+.... ..+.|+++++||+|+.+.+
T Consensus 53 i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~----------~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 53 IWDTNGQERFRSLNNSYYRGAHGYLLVYDV----------TDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEECCCcHHHHhhHHHHccCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccc
Confidence 699999999999999999999999999999 88999999999888876542 3458999999999987432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. ...+.++++||+++.||+++|.++.
T Consensus 122 ~v------------------------------~~~~~~~~~~-------------~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 122 VV------------------------------DSNIAKSFCD-------------SLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred cC------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 0122333311 1234678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++++
T Consensus 159 ~~~~~~ 164 (188)
T cd04125 159 KLIIKR 164 (188)
T ss_pred HHHHHH
Confidence 998764
No 98
>KOG0072|consensus
Probab=99.74 E-value=7.6e-18 Score=119.26 Aligned_cols=116 Identities=20% Similarity=0.274 Sum_probs=95.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||++||.+.|..|..||.+.+++|||+|. ++..++..+...+-.+++++.+.+..+++++||+|.....
T Consensus 66 vwdLggqtSirPyWRcYy~dt~avIyVVDs----------sd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~ 135 (182)
T KOG0072|consen 66 VWDLGGQTSIRPYWRCYYADTDAVIYVVDS----------SDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL 135 (182)
T ss_pred eeEccCcccccHHHHHHhcccceEEEEEec----------cchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh
Confidence 799999999999999999999999999999 7899999999999999999999999999999999997765
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . ++... ..+.. -+++.+.++.+||..|++++.+++|+.
T Consensus 136 t~--~------------------------------E~~~~-----L~l~~---Lk~r~~~Iv~tSA~kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 136 TR--S------------------------------EVLKM-----LGLQK---LKDRIWQIVKTSAVKGEGLDPAMDWLQ 175 (182)
T ss_pred hH--H------------------------------HHHHH-----hChHH---HhhheeEEEeeccccccCCcHHHHHHH
Confidence 43 1 01100 00100 124568899999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+..+
T Consensus 176 ~~l~~~ 181 (182)
T KOG0072|consen 176 RPLKSR 181 (182)
T ss_pred HHHhcc
Confidence 988653
No 99
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.73 E-value=1.6e-17 Score=122.25 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=87.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++|+.+|..++++++++|+|+|+ ++.++++....|...+.+.....+.|+++++||.|+...+
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~----------~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 53 ILDTAGTEQFTAMRELYIKSGQGFLLVYSV----------TSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred EEeCCCcccchhhhHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 699999999999999999999999999999 8899999998888888765445679999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.++. ++ .+.+.++++||+.+.||.++|+++.
T Consensus 123 ~~------------------------------~~~~~~~~~-~~-----------~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 123 QV------------------------------SREDGVSLS-QQ-----------WGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred cc------------------------------CHHHHHHHH-HH-----------cCCceEEEeeCCCCCCHHHHHHHHH
Confidence 11 011122221 11 1225577999999999999999999
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8775
No 100
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.73 E-value=2.7e-17 Score=128.90 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=86.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--------CCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--------WLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--------~~~~~~iilv~N 72 (174)
||||+|++.|+.++..|+.+++++|+|||+ ++.++|++...|++.+.... ...+.|++|++|
T Consensus 52 I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv----------~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 52 ILDTSGNHPFPAMRRLSILTGDVFILVFSL----------DNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred EEECCCChhhhHHHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 699999999999999999999999999999 89999999999999886542 235789999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+..++.. ..+++.+++.. ...+.++++||+++.||
T Consensus 122 K~Dl~~~~~v------------------------------~~~ei~~~~~~------------~~~~~~~evSAktg~gI 159 (247)
T cd04143 122 KADRDFPREV------------------------------QRDEVEQLVGG------------DENCAYFEVSAKKNSNL 159 (247)
T ss_pred Cccchhcccc------------------------------CHHHHHHHHHh------------cCCCEEEEEeCCCCCCH
Confidence 9999652211 11223333211 12356789999999999
Q ss_pred HHHHHHHHHHH
Q psy12099 153 RRVFNDCRDII 163 (174)
Q Consensus 153 ~~~f~~~~~~i 163 (174)
+++|+++....
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 101
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.73 E-value=1.7e-17 Score=121.31 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=85.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+++++.+|..++++++++|+|+|+ ++.+++.....|+..+.+.. ..+.|++|++||+|+...+
T Consensus 56 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 56 IWDTAGQERYRAITSAYYRGAVGALLVYDI----------TKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred EEeCCChHHHHHHHHHHHCCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 78899999999988876553 3468999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..++..++.. ...+.++++||+++.||+++|+++.
T Consensus 125 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 125 AV------------------------------PTEEAKAFAE-------------KNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred cC------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 1122223211 1235678999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.73 E-value=3e-17 Score=125.56 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=89.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..++++++++|+|+|+ ++..++.....|+..+.... ..+.|+++++||+|+...+
T Consensus 59 l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~----------~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~ 127 (210)
T PLN03108 59 IWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRR 127 (210)
T ss_pred EEeCCCcHHHHHHHHHHhccCCEEEEEEEC----------CcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCcccc
Confidence 699999999999999999999999999999 88999999888888875543 3578999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++.. ...+.++++||+++.||.++|.++.
T Consensus 128 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 128 AV------------------------------STEEGEQFAK-------------EHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 1222333321 1235688999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.++++.
T Consensus 165 ~~~~~~~ 171 (210)
T PLN03108 165 AKIYKKI 171 (210)
T ss_pred HHHHHHh
Confidence 9988653
No 103
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=3.6e-17 Score=119.83 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=85.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++..|..++++++++|+|+|+ ++..++.....|+..+.... ..++|+++|+||+|+...+
T Consensus 56 i~D~~G~~~~~~~~~~~~~~~d~~llv~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 56 IWDTAGQERFRTITQSYYRSANGAIIAYDI----------TRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred EEECCChHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 88999999889988886542 3578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+... .+...+.++||+++.|++++|+++.
T Consensus 125 ~~------------------------------~~~~~~~~~~~------------~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 125 EV------------------------------LFEEACTLAEK------------NGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred cc------------------------------CHHHHHHHHHH------------cCCcEEEEEECCCCCCHHHHHHHHH
Confidence 11 11222222110 1224678999999999999999988
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 163 ~~ 164 (165)
T cd01864 163 TE 164 (165)
T ss_pred Hh
Confidence 64
No 104
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.72 E-value=2.3e-17 Score=120.13 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=83.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..|+++++++++|+|+ ++.+++.....|...+... ..++|+++++||+|+..+.
T Consensus 55 i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~----------~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 55 LWDTAGQEEFDAITKAYYRGAQACILVFST----------TDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred EeeCCchHHHHHhHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhccccc
Confidence 699999999999999999999999999999 7888999888888877543 3578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.|++++|+++.
T Consensus 123 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 123 VI------------------------------TNEEAEALAK-------------RLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCeEEEEECCCCCCHHHHHHHHH
Confidence 11 0122333321 1224678999999999999999987
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 105
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=2.4e-17 Score=120.10 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=86.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++||++++..|.+++++++++|+|+|+ ++..++.....|+..+... ...++|++|++||.|+..+.
T Consensus 53 l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 53 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred EEECcchHHHHHhHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhc
Confidence 699999999999999999999999999999 8899999998988876443 23578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.|+.++|+++.
T Consensus 122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 122 EV------------------------------TFLEASRFAQ-------------ENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred cC------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 1222333321 1226788999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 159 ~~~ 161 (161)
T cd04113 159 RSI 161 (161)
T ss_pred HhC
Confidence 753
No 106
>PLN03118 Rab family protein; Provisional
Probab=99.72 E-value=4e-17 Score=124.72 Aligned_cols=113 Identities=18% Similarity=0.168 Sum_probs=86.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+||++++.+|..|+++++++|+|+|+ ++.+++.....+|...+.. ....+.|++|++||+|+..+
T Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~----------~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 66 IWDTAGQERFRTLTSSYYRNAQGIILVYDV----------TRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred EEECCCchhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 699999999999999999999999999999 7899999887766554432 23456899999999998653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. ..+++..+.. ...+.++++||+++.||+++|+++
T Consensus 136 ~~i------------------------------~~~~~~~~~~-------------~~~~~~~e~SAk~~~~v~~l~~~l 172 (211)
T PLN03118 136 RDV------------------------------SREEGMALAK-------------EHGCLFLECSAKTRENVEQCFEEL 172 (211)
T ss_pred Ccc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHH
Confidence 211 0111222211 123567899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.+...
T Consensus 173 ~~~~~~~ 179 (211)
T PLN03118 173 ALKIMEV 179 (211)
T ss_pred HHHHHhh
Confidence 9988754
No 107
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.72 E-value=4e-17 Score=118.97 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=87.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||++|+++++..|..++++++++|+|+|. ++.+++.....|+..+..... .++|+++++||+|+...+
T Consensus 54 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 54 IWDTAGQERYRSLAPMYYRGAAAAIVVYDI----------TSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKR 122 (163)
T ss_pred EEeCCchHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccC
Confidence 699999999999999999999999999999 789999999999998876543 678999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.|+.++|+++.
T Consensus 123 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 123 QV------------------------------STEEAQEYADE-------------NGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred cC------------------------------CHHHHHHHHHH-------------cCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 11222222211 125688999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.|
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 875
No 108
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.71 E-value=5.7e-17 Score=121.81 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=87.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+++++.+|..||++++++|+|+|+ ++.++++....|+..+.+. ..+.|++||+||+|+....
T Consensus 54 i~D~~G~~~~~~~~~~~~~~~d~iilv~d~----------~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~ 121 (193)
T cd04118 54 IWDTAGSERYEAMSRIYYRGAKAAIVCYDL----------TDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQD 121 (193)
T ss_pred EEECCCchhhhhhhHhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccc
Confidence 699999999999999999999999999999 8899999888888887654 2478999999999985421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ...+ ..+++.+|.. ...+.++++||+++.||.++|+++.
T Consensus 122 ~~--~~~v------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 122 RS--LRQV------------------------DFHDVQDFAD-------------EIKAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred cc--cCcc------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 00 0000 1122333321 1124567999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++++
T Consensus 163 ~~~~~~ 168 (193)
T cd04118 163 EDFVSR 168 (193)
T ss_pred HHHHHh
Confidence 988765
No 109
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.71 E-value=5.7e-17 Score=118.34 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=83.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|.+++++++++|+|+|+ ++.+++.+...|+..+.... .+.|+++++||+|+..+.
T Consensus 56 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 56 IFDSAGQELYSDMVSNYWESPSVFILVYDV----------SNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKA 123 (164)
T ss_pred EEECCCHHHHHHHHHHHhCCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 78899988888888876542 568999999999985432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . ...+..+. . ...+.++++||+++.|+.++|+.+.
T Consensus 124 ~~----~--------------------------~~~~~~~~-~------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 124 EV----T--------------------------DAQAQAFA-Q------------ANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred CC----C--------------------------HHHHHHHH-H------------HcCCeEEEEeCCCCCChHHHHHHHH
Confidence 11 0 01111111 0 1124577999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 765
No 110
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.70 E-value=9.7e-17 Score=118.30 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=85.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++.++.+|..++++++++|+|+|+ ++..+++.... |...+... ..+.|+++++||+|+..+
T Consensus 52 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~----------~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 52 LYDTAGQEDYDRLRPLSYPMTDVFLICFSV----------VNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred EEeCCCcccccccccccCCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcC
Confidence 699999999999999999999999999999 88999988864 55554332 467999999999998654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+... .. ..-..+++..+... .....++++||+++.||+++|+.+
T Consensus 120 ~~~--~~~~~~~----~~------------~~v~~~~~~~~~~~------------~~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 120 PKT--LARLNDM----KE------------KPVTVEQGQKLAKE------------IGAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred hhh--HHHHhhc----cC------------CCCCHHHHHHHHHH------------cCCCEEEEecCCcCCCHHHHHHHH
Confidence 321 1111111 00 00123344444211 111356799999999999999999
Q ss_pred HHHH
Q psy12099 160 RDII 163 (174)
Q Consensus 160 ~~~i 163 (174)
.+.+
T Consensus 170 ~~~~ 173 (174)
T cd04135 170 ILAI 173 (174)
T ss_pred HHHh
Confidence 8876
No 111
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.70 E-value=1.2e-16 Score=116.05 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=86.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++..|..++++++++++|+|+ ++..++.....++..+.......+.|+++++||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDS----------SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 699999999999999999999999999999 7888999999999998876556689999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+. + .... ...+.+.++++||+++.|+.++|+++.
T Consensus 117 ~~---~~~~~~-----------------------------~-----~~~~---~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 117 SV---SELIEK-----------------------------L-----GLEK---ILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred CH---HHHHHh-----------------------------h-----Chhh---ccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 00 011110 0 0000 123457788999999999999999986
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 157 ~ 157 (158)
T cd00878 157 Q 157 (158)
T ss_pred h
Confidence 4
No 112
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.70 E-value=8.1e-17 Score=117.22 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=86.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.+...|..++++++++|+|+|+ ++.+++.....|+..+.+.....+.|+++++||+|+....
T Consensus 53 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~ 122 (161)
T cd01863 53 IWDTAGQERFRTLTSSYYRGAQGVILVYDV----------TRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE 122 (161)
T ss_pred EEECCCchhhhhhhHHHhCCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc
Confidence 699999999999999999999999999999 8899999988888888776656789999999999997322
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+++..+.. ...+.+.++||+++.|++++|+++.
T Consensus 123 ~~-------------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 123 VT-------------------------------REEGLKFAR-------------KHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred cC-------------------------------HHHHHHHHH-------------HcCCEEEEEecCCCCCHHHHHHHHH
Confidence 11 122223321 1236788999999999999999987
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 64
No 113
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.70 E-value=1.3e-16 Score=116.87 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=82.7
Q ss_pred CeeCCCCchh-hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-CCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDE-RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-LRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~-r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-~~~~~iilv~NK~Dl~~ 78 (174)
|||++|++++ ...+..++++++++|+|+|+ ++.++++....|+..+..... ..+.|+++|+||+|+..
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSI----------TDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 6999999963 56788899999999999999 889999988888777655332 35799999999999864
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc-hhHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT-ENIRRVFN 157 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~-~~i~~~f~ 157 (174)
.+.. ..+++..+.. .....++++||+++ .||+++|.
T Consensus 121 ~~~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~~v~~~f~ 157 (165)
T cd04146 121 YRQV------------------------------STEEGEKLAS-------------ELGCLFFEVSAAEDYDGVHSVFH 157 (165)
T ss_pred hCcc------------------------------CHHHHHHHHH-------------HcCCEEEEeCCCCCchhHHHHHH
Confidence 3211 0122333311 11245779999999 59999999
Q ss_pred HHHHHHH
Q psy12099 158 DCRDIIQ 164 (174)
Q Consensus 158 ~~~~~i~ 164 (174)
.+.+.+.
T Consensus 158 ~l~~~~~ 164 (165)
T cd04146 158 ELCREVR 164 (165)
T ss_pred HHHHHHh
Confidence 9988664
No 114
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.69 E-value=7.6e-17 Score=119.25 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=82.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+||++++.+|..|+++++++|+|||+ +++.+++... .|+..+... ..+.|+++++||+|+...
T Consensus 52 i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 52 LCDTAGQDEFDKLRPLCYPDTDVFLLCFSV----------VNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTD 119 (173)
T ss_pred EEECCCChhhccccccccCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccC
Confidence 699999999999999999999999999999 8999999875 566666542 346899999999998643
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
.- .+..+...... .-..+++..+... .....++++||+++.||+++|+.+
T Consensus 120 ~~-----~~~~~~~~~~~-------------~v~~~~~~~~a~~------------~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 120 VN-----VLIQLARYGEK-------------PVSQSRAKALAEK------------IGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred hh-----HHHHHhhcCCC-------------CcCHHHHHHHHHH------------hCCCeEEEEeCCCCCCHHHHHHHH
Confidence 21 01111111000 0123445554321 112367899999999999999876
Q ss_pred H
Q psy12099 160 R 160 (174)
Q Consensus 160 ~ 160 (174)
.
T Consensus 170 ~ 170 (173)
T cd04130 170 I 170 (173)
T ss_pred H
Confidence 4
No 115
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.69 E-value=1.7e-16 Score=115.39 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=87.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++||+.+...+..++++++++++|+|+ ++..++.....|+..+.......+.|+++++||+|+..+.
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 121 (164)
T cd04139 52 ILDTAGQEDYAAIRDNYHRSGEGFLLVFSI----------TDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR 121 (164)
T ss_pred EEECCChhhhhHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc
Confidence 699999999999999999999999999999 7888999999999988876445679999999999987521
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+....+.. ...+.++++||+++.|+.++|+++.
T Consensus 122 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 122 QV----S--------------------------SEEAANLAR-------------QWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred cc----C--------------------------HHHHHHHHH-------------HhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 11 0 111111111 0124578999999999999999998
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 87753
No 116
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=1.8e-16 Score=116.33 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=87.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW---LRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~---~~~~~iilv~NK~Dl~ 77 (174)
+||++|++.+..+|..++++++++|+|+|+ .+..++.+...|...++.... ..++|+++++||+|+.
T Consensus 53 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 53 IWDTAGQERFQSLGVAFYRGADCCVLVYDV----------TNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEeCCChHHHHhHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 699999999999999999999999999999 788888888788777655422 3478999999999997
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
.++.. . .+....+... ...+.++++||+++.|++++|+
T Consensus 123 ~~~~~----~--------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 123 EKRQV----S--------------------------TKKAQQWCQS------------NGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ccccc----C--------------------------HHHHHHHHHH------------cCCceEEEEECCCCCCHHHHHH
Confidence 42211 0 1112222111 1235678999999999999999
Q ss_pred HHHHHHHHh
Q psy12099 158 DCRDIIQRM 166 (174)
Q Consensus 158 ~~~~~i~~~ 166 (174)
++.+.++++
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988765
No 117
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.69 E-value=1.2e-16 Score=116.17 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=84.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..++++++++|+|+|+ ++++++.....|+..+.... ..+.|+++++||.|+....
T Consensus 53 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 53 LWDTAGQERFRSLIPSYIRDSSVAVVVYDI----------TNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred EEECCCcHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccC
Confidence 699999999999999999999999999999 88999999999999876543 2479999999999985322
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+++..+.. ...+.+.++||+++.|++++|+++.
T Consensus 122 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 122 QV----S--------------------------TEEGEKKAK-------------ELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred cc----C--------------------------HHHHHHHHH-------------HhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 1 112222211 1225678999999999999999997
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 64
No 118
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=1.8e-16 Score=115.33 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=87.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++++...+..++++++++|+|+|+ ++..+++....|+..+..... .++|+++++||+|+....
T Consensus 53 l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 53 IWDTAGQERFRSITSSYYRGAVGALLVYDI----------TNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred EEECCChHHHHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhccccc
Confidence 699999999999999999999999999999 889999998888888766532 579999999999975421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +.+.+.++.. ...+.++++||+++.|++++|+++.
T Consensus 122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 122 QV------------------------------SREEAEAFAE-------------EHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred CC------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 10 1222333321 1225578999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 88764
No 119
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.68 E-value=1.4e-16 Score=115.55 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=83.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++.+|..++++++++|+|+|+ ++.+++.....|+..+..... .+.|+++++||+|+...+
T Consensus 53 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 53 IWDTAGQERYHALGPIYYRDADGAILVYDI----------TDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQR 121 (162)
T ss_pred EEECCchHHHHHhhHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 788899888888887755432 378999999999987432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+....+.. .....++++||+++.++.++|+++.
T Consensus 122 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 122 VV----S--------------------------KSEAEEYAK-------------SVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred CC----C--------------------------HHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 10 0 011112211 1124567999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 120
>KOG0074|consensus
Probab=99.68 E-value=3.1e-17 Score=115.89 Aligned_cols=111 Identities=23% Similarity=0.348 Sum_probs=89.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||+|||+..|..|..||.+++++|||+|. ++..+|++.-+.+.+++........|++|++||+|+..+.
T Consensus 66 vwDiGGqr~IRpyWsNYyenvd~lIyVIDS----------~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 66 VWDIGGQRGIRPYWSNYYENVDGLIYVIDS----------TDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred EEecCCccccchhhhhhhhccceEEEEEeC----------CchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc
Confidence 799999999999999999999999999998 8999999999989998888888899999999999998754
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. +.. |.+. +++. -..|.++++++||+.++++....+++.
T Consensus 136 ~~------eei-------------------------a~kl------nl~~---lrdRswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 136 KV------EEI-------------------------ALKL------NLAG---LRDRSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred ch------HHH-------------------------HHhc------chhh---hhhceEEeeeCccccccCccCcchhhh
Confidence 22 110 1000 1111 345779999999999999888877765
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
.
T Consensus 176 s 176 (185)
T KOG0074|consen 176 S 176 (185)
T ss_pred c
Confidence 3
No 121
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=1.5e-16 Score=117.60 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=81.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++.+|..||++++++|+|+|. ++..+++....|+..+.. ..++|+++++||+|+..++
T Consensus 58 ~~d~~g~~~~~~~~~~~~~~~d~~llv~d~----------~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 58 LREVGEDEVAILLNDAELAACDVACLVYDS----------SDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred EEecCCcccccccchhhhhcCCEEEEEEeC----------CCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccc
Confidence 599999999999999999999999999999 788898888888876532 2378999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
... ... +..+. ++ . ..-.++++||+++.|++++|+.+.
T Consensus 125 ~~~-~~~-----------------------------~~~~~-~~----~-------~~~~~~~~Sa~~~~~v~~lf~~l~ 162 (169)
T cd01892 125 QRY-EVQ-----------------------------PDEFC-RK----L-------GLPPPLHFSSKLGDSSNELFTKLA 162 (169)
T ss_pred ccc-ccC-----------------------------HHHHH-HH----c-------CCCCCEEEEeccCccHHHHHHHHH
Confidence 110 000 11110 00 0 001246899999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.++.
T Consensus 163 ~~~~~ 167 (169)
T cd01892 163 TAAQY 167 (169)
T ss_pred HHhhC
Confidence 88764
No 122
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=3.8e-16 Score=114.75 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=82.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|++.++..|..++++++++|+|+|+ ++..+++.... |...+... . .+.|++|++||+|+...
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~----------~~~~s~~~~~~~~~~~i~~~-~-~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 51 IVDTSSRPQDRANLAAEIRKANVICLVYSV----------DRPSTLERIRTKWLPLIRRL-G-VKVPIILVGNKSDLRDG 118 (166)
T ss_pred EEeCCCchhhhHHHhhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhcccc
Confidence 699999999999999999999999999999 88899988764 44444332 2 37899999999999654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... .. .++....+..+|.. ...+.+|||+++.|++++|+.+
T Consensus 119 ~~~---~~--------------------------~~~~~~~~~~~~~~----------~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 119 SSQ---AG--------------------------LEEEMLPIMNEFRE----------IETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred cch---hH--------------------------HHHHHHHHHHHHhc----------ccEEEEeccccccCHHHHHHHH
Confidence 321 00 01111112222211 1246799999999999999999
Q ss_pred HHHHHH
Q psy12099 160 RDIIQR 165 (174)
Q Consensus 160 ~~~i~~ 165 (174)
.+.+++
T Consensus 160 ~~~~~~ 165 (166)
T cd01893 160 QKAVLH 165 (166)
T ss_pred HHHhcC
Confidence 988764
No 123
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=5e-16 Score=117.88 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=83.9
Q ss_pred CeeCCCCchhh----h----hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEE
Q psy12099 1 MFDVGGQRDER----R----KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq~~~r----~----~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv 70 (174)
||||+|++.+. . ....++++++++|+|||+ ++..+++....|++.+.+.. ...++|++|+
T Consensus 53 i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~----------~~~~S~~~~~~~~~~i~~~~~~~~~~~piiiv 122 (198)
T cd04142 53 ILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDI----------CSPDSFHYVKLLRQQILETRPAGNKEPPIVVV 122 (198)
T ss_pred EEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 69999976532 1 234568999999999999 89999999999988887653 2467999999
Q ss_pred EeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch
Q psy12099 71 LNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE 150 (174)
Q Consensus 71 ~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~ 150 (174)
+||+|+...+.. . .+++..+.. +...+.+++|||++|.
T Consensus 123 gNK~Dl~~~~~~--~----------------------------~~~~~~~~~------------~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 123 GNKRDQQRHRFA--P----------------------------RHVLSVLVR------------KSWKCGYLECSAKYNW 160 (198)
T ss_pred EECccccccccc--c----------------------------HHHHHHHHH------------HhcCCcEEEecCCCCC
Confidence 999999654321 0 111222111 1123567899999999
Q ss_pred hHHHHHHHHHHHHHHh
Q psy12099 151 NIRRVFNDCRDIIQRM 166 (174)
Q Consensus 151 ~i~~~f~~~~~~i~~~ 166 (174)
||+++|+.+.+.++.+
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999988765
No 124
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=4.7e-16 Score=117.73 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=86.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++.+|..|+++++++|+|+|+ ++..++++...|+..+.......+.|++|++||+|+....
T Consensus 51 i~D~~G~~~~~~~~~~~~~~ad~vilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 51 ILDTSGSYSFPAMRKLSIQNSDAFALVYAV----------DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred EEECCCchhhhHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 699999999999999999999999999999 7899999999998888776555679999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-. .. .+.+.+.... .....+.++||+++.||.++|+++.
T Consensus 121 ~~---v~--------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 121 RQ---VP--------------------------AKDALSTVEL------------DWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred cc---cc--------------------------HHHHHHHHHh------------hcCCcEEEecCCCCCCHHHHHHHHH
Confidence 00 00 1111111100 1123466899999999999999999
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 125
>KOG0395|consensus
Probab=99.66 E-value=6.9e-16 Score=116.94 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=93.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|+||+||+.+..+..+|++++++.++||++ +++.+|+++..+++.++..+....+|++|||||+|+...+
T Consensus 55 ilDt~g~~~~~~~~~~~~~~~~gF~lVysi----------td~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R 124 (196)
T KOG0395|consen 55 ILDTAGQEEFSAMRDLYIRNGDGFLLVYSI----------TDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER 124 (196)
T ss_pred EEcCCCcccChHHHHHhhccCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc
Confidence 689999999999999999999999999999 9999999999999999777777789999999999998754
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. + .+++..+ +..-.+.+.+|||+...||.++|..+.
T Consensus 125 ~V----~--------------------------~eeg~~l-------------a~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 125 QV----S--------------------------EEEGKAL-------------ARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred cc----C--------------------------HHHHHHH-------------HHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 33 1 2222322 011224578999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
..+..
T Consensus 162 r~~~~ 166 (196)
T KOG0395|consen 162 REIRL 166 (196)
T ss_pred HHHHh
Confidence 98876
No 126
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=6.8e-16 Score=114.56 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=89.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..++.+++++|+|+|+ ++..+++....++..+++.....+.|++|++||+|+....
T Consensus 53 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 53 IVDTAGQDEYSILPQKYSIGIHGYILVYSV----------TSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred EEECCChHhhHHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence 699999999999999999999999999999 7899999999999999887655678999999999986422
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .++...+. + .....+.++||+++.++.++|.++.
T Consensus 123 ~~----~--------------------------~~~~~~~~-~------------~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 123 QV----S--------------------------TEEGKELA-E------------SWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred cc----C--------------------------HHHHHHHH-H------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 0 01111110 0 0124677899999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.+..
T Consensus 160 ~~~~~~~ 166 (180)
T cd04137 160 EEIEKVE 166 (180)
T ss_pred HHHHHhc
Confidence 9887653
No 127
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.65 E-value=6.8e-16 Score=118.99 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=81.1
Q ss_pred CeeCCCCchhhhhHhhhhc-CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFN-DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~-~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++ ......+++ +++++|+|||+ ++..++.....|+..+.+.....+.|++||+||+|+...
T Consensus 54 i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~----------td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 54 VIDHWEQE--MWTEDSCMQYQGDAFVVVYSV----------TDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred EEeCCCcc--hHHHhHHhhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence 69999999 334456677 99999999999 899999999999888876544568999999999998653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... . .+++.++.. ...+.+++|||+++.||+++|+++
T Consensus 122 ~~v----~--------------------------~~~~~~~a~-------------~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 122 REV----S--------------------------VQEGRACAV-------------VFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred cee----c--------------------------HHHHHHHHH-------------HcCCeEEEecCCCCCCHHHHHHHH
Confidence 211 0 111222210 112456789999999999999999
Q ss_pred HHHHHH
Q psy12099 160 RDIIQR 165 (174)
Q Consensus 160 ~~~i~~ 165 (174)
.+.+..
T Consensus 159 ~~~~~~ 164 (221)
T cd04148 159 VRQIRL 164 (221)
T ss_pred HHHHHh
Confidence 988753
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.65 E-value=1.1e-15 Score=109.91 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=85.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++..|..|+++++++++|+|+ ++..++.....++..++......+.|+++++||+|+..+.
T Consensus 48 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 48 VWDLGGQPRFRSMWERYCRGVNAIVYVVDA----------ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred EEECCCCHhHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 699999999999999999999999999999 7788888888888888876656788999999999986431
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
...+...... +.. ...+.+.++++||+++.++.++|+++.
T Consensus 118 ------~~~~~~~~~~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 118 ------SVDELIEQMN-------------------------------LKS---ITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred ------CHHHHHHHhC-------------------------------ccc---ccCCceEEEEEEeccCCChHHHHHHHh
Confidence 1111111110 000 112346778999999999999999986
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 4
No 129
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.64 E-value=2.1e-15 Score=111.22 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=82.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++.++.+|..++++++++++|+|+ ++.++++.... |...+... ..+.|+++++||+|+...
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 53 LWDTAGQEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 120 (175)
T ss_pred EEeCCCchhhhhccccccCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccC
Confidence 699999999999999999999999999999 78888888754 55554432 357899999999998653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+. .... ..-....+..+... .....+++|||+++.||+++|+++
T Consensus 121 ~~~--~~~i~----~~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~~lf~~l 170 (175)
T cd01870 121 EHT--RRELA----KMKQ------------EPVKPEEGRDMANK------------IGAFGYMECSAKTKEGVREVFEMA 170 (175)
T ss_pred hhh--hhhhh----hccC------------CCccHHHHHHHHHH------------cCCcEEEEeccccCcCHHHHHHHH
Confidence 211 11111 0000 00012233333211 122467899999999999999998
Q ss_pred HHHH
Q psy12099 160 RDII 163 (174)
Q Consensus 160 ~~~i 163 (174)
.+..
T Consensus 171 ~~~~ 174 (175)
T cd01870 171 TRAA 174 (175)
T ss_pred HHHh
Confidence 8643
No 130
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=1.9e-15 Score=110.80 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=82.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++..|..|++.++++|+|+|+ ++..++.....|+..+... ...+.|+++++||+|+...+
T Consensus 60 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 60 IWDTAGQERFRSITQSYYRSANALILTYDI----------TCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERR 128 (169)
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 7888888887777765432 23468999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+... .|... ....++++||+++.|++++|+++.
T Consensus 129 ~i------~------------------------~~~~~-----~~~~~--------~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 129 EV------S------------------------QQRAE-----EFSDA--------QDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred cc------C------------------------HHHHH-----HHHHH--------cCCeEEEeeCCCCCCHHHHHHHHH
Confidence 11 0 00111 11111 125678999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 865
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.62 E-value=2.4e-15 Score=110.74 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=84.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++..|..++++++++++|+|. ++..++.....++..++......++|+++++||+|+....
T Consensus 62 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 62 VWDIGGQRAIRPYWRNYFENTDCLIYVIDS----------ADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 599999999999999999999999999999 6778888888888888776555679999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.+.+.....+ +.. ...+.+.+.++||++++|++++|+++.
T Consensus 132 ------~~~~i~~~l~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 132 ------PAEEIAEALN-------------------------------LHD---LRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred ------CHHHHHHHcC-------------------------------Ccc---cCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 1111111111 111 123456778999999999999999986
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
+
T Consensus 172 ~ 172 (173)
T cd04155 172 K 172 (173)
T ss_pred c
Confidence 4
No 132
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.61 E-value=2.1e-15 Score=113.12 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=88.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+||++|++.++..+..++++++++|+|+|+ ++.+++.+... |...+.+. ..++|++|+|||+|+..+
T Consensus 53 i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i----------~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~ 120 (187)
T cd04129 53 LWDTAGQEEYERLRPLSYSKAHVILIGFAV----------DTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQD 120 (187)
T ss_pred EEECCCChhccccchhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhC
Confidence 699999999998888899999999999999 78889988864 66666443 246999999999998543
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... .....+ ......+.+..+.. . -....+++|||+++.||+++|+++
T Consensus 121 ~~~-----~~~~~~---------------~~~~~~~~~~~~~~-~-----------~~~~~~~e~Sa~~~~~v~~~f~~l 168 (187)
T cd04129 121 AVA-----KEEYRT---------------QRFVPIQQGKRVAK-E-----------IGAKKYMECSALTGEGVDDVFEAA 168 (187)
T ss_pred ccc-----cccccc---------------CCcCCHHHHHHHHH-H-----------hCCcEEEEccCCCCCCHHHHHHHH
Confidence 221 000000 00011233333321 1 112367899999999999999999
Q ss_pred HHHHHHhhhhhc
Q psy12099 160 RDIIQRMHLRQY 171 (174)
Q Consensus 160 ~~~i~~~~~~~~ 171 (174)
.+.++...-++.
T Consensus 169 ~~~~~~~~~~~~ 180 (187)
T cd04129 169 TRAALLVRKSEP 180 (187)
T ss_pred HHHHhcccCccc
Confidence 988875544443
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.61 E-value=2.8e-15 Score=108.39 Aligned_cols=110 Identities=22% Similarity=0.161 Sum_probs=87.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.+...+..++++++++|+|+|+ ++..++.+...|+..+.+.......|+++++||+|+....
T Consensus 51 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 51 ILDTAGQEEFSAMRDLYIRQGDGFILVYSI----------TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred EEECCChHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 599999999999999999999999999999 7888999999999988776444679999999999987522
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+... ....+.++||+++.||+++|+++.
T Consensus 121 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 121 QV------------------------------SKEEGKALAKE-------------WGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred ee------------------------------cHHHHHHHHHH-------------cCCcEEEeccCCCCCHHHHHHHHH
Confidence 11 12223333221 124677999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.|
T Consensus 158 ~~i 160 (160)
T cd00876 158 REI 160 (160)
T ss_pred hhC
Confidence 753
No 134
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.60 E-value=2.4e-15 Score=114.52 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=62.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC------------------CC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR------------------WL 62 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~------------------~~ 62 (174)
||||+||++|+.++..||++++++|+|||+ ++..+++.+..|+.++.+.. ..
T Consensus 58 IwDtaG~e~~~~l~~~~yr~ad~iIlVyDv----------tn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~ 127 (202)
T cd04102 58 LWDVGGSESVKSTRAVFYNQVNGIILVHDL----------TNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGG 127 (202)
T ss_pred EEecCCchhHHHHHHHHhCcCCEEEEEEEC----------cChHHHHHHHHHHHHHHHhhccccccccccccccccccCC
Confidence 699999999999999999999999999999 89999999999999986531 12
Q ss_pred CCCcEEEEEeCCchhhHH
Q psy12099 63 RTISVILFLNKQDLLAEK 80 (174)
Q Consensus 63 ~~~~iilv~NK~Dl~~~~ 80 (174)
.++|++|||||+|+..++
T Consensus 128 ~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 128 NQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred CCceEEEEEECccchhhc
Confidence 468999999999997654
No 135
>KOG0393|consensus
Probab=99.59 E-value=5.6e-15 Score=110.93 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=88.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+||+.|.++|+..|.++|.+|+||++ .++.++++. ..|+-++..+. +++|++|+|+|.||..+
T Consensus 57 LwDTAGqedYDrlRplsY~~tdvfl~cfsv----------~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 57 LWDTAGQEDYDRLRPLSYPQTDVFLLCFSV----------VSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDD 124 (198)
T ss_pred eeecCCCcccccccccCCCCCCEEEEEEEc----------CChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhC
Confidence 699999999999999999999999999999 899999986 56666665443 78999999999999743
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
.. .+++.......+. ..+++... .+ .-.-+.+.++||++..|++++|+..
T Consensus 125 ~~-----~~~~l~~~~~~~V-------------t~~~g~~l--------A~----~iga~~y~EcSa~tq~~v~~vF~~a 174 (198)
T KOG0393|consen 125 PS-----TLEKLQRQGLEPV-------------TYEQGLEL--------AK----EIGAVKYLECSALTQKGVKEVFDEA 174 (198)
T ss_pred HH-----HHHHHHhccCCcc-------------cHHHHHHH--------HH----HhCcceeeeehhhhhCCcHHHHHHH
Confidence 21 1122211111111 12222221 11 0122567899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
....+..
T Consensus 175 ~~~~l~~ 181 (198)
T KOG0393|consen 175 IRAALRP 181 (198)
T ss_pred HHHHhcc
Confidence 8888753
No 136
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=7.4e-15 Score=112.44 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=59.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ..+.|+++++||+|+..
T Consensus 62 ~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 62 VWDTAGQEKFGGLRDGYYIKGQCAIIMFDV----------TSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEECCCchhhhhhhHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCcc
Confidence 599999999999999999999999999999 8999999998998887654 35789999999999854
No 137
>KOG4252|consensus
Probab=99.58 E-value=1.2e-14 Score=106.59 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=88.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||+|||+.|..+..-||++|.+.++||+- +++.+|+..++|.+.+.+.. ..+|.+++-||+|+.+.-
T Consensus 73 lWdtagqeEfDaItkAyyrgaqa~vLVFST----------TDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 73 LWDTAGQEEFDAITKAYYRGAQASVLVFST----------TDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred HHHhccchhHHHHHHHHhccccceEEEEec----------ccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhh
Confidence 599999999999999999999999999999 99999999999999987653 589999999999998753
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . ...++. ..+.. ....+.||++..-||..+|..++
T Consensus 141 ~~--~-------------------------~~evE~---lak~l-------------~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 141 QM--D-------------------------KGEVEG---LAKKL-------------HKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred hc--c-------------------------hHHHHH---HHHHh-------------hhhhhhhhhhhhhhhHHHHHHHH
Confidence 22 0 001111 11111 12234599999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.++.
T Consensus 178 eK~~q~~ 184 (246)
T KOG4252|consen 178 EKLTQQK 184 (246)
T ss_pred HHHHHHH
Confidence 8887653
No 138
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=7.8e-15 Score=105.30 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=83.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|++.++..|..++++++++|+|+|+ ++.+++.....|+..+.... ..+.|+++++||+|+....
T Consensus 53 l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 53 IWDTAGQERFRSITPSYYRGAHGAILVYDI----------TNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQR 121 (159)
T ss_pred EEecCChHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccc
Confidence 699999999999999999999999999999 78888998888888876653 2578999999999986221
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..++..++.. .....+.++||+++.++.++|.++.
T Consensus 122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 122 QV------------------------------STEEAQQFAK-------------ENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cc------------------------------cHHHHHHHHH-------------HcCCeEEEEecCCCCCHHHHHHHHh
Confidence 10 1122333321 1236788999999999999999875
No 139
>PLN00023 GTP-binding protein; Provisional
Probab=99.56 E-value=6.4e-15 Score=118.62 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=61.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-----------CCCCcEEE
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-----------LRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~iil 69 (174)
||||+||++|+.+|..||++++++|+|||+ ++..+++.+..|++.+..... ..++|++|
T Consensus 87 IWDTAGqErfrsL~~~yyr~AdgiILVyDI----------Tdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIIL 156 (334)
T PLN00023 87 LWDVSGHERYKDCRSLFYSQINGVIFVHDL----------SQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIV 156 (334)
T ss_pred EEECCCChhhhhhhHHhccCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEE
Confidence 699999999999999999999999999999 899999999999999875421 23689999
Q ss_pred EEeCCchhhH
Q psy12099 70 FLNKQDLLAE 79 (174)
Q Consensus 70 v~NK~Dl~~~ 79 (174)
||||+||..+
T Consensus 157 VGNK~DL~~~ 166 (334)
T PLN00023 157 IGNKADIAPK 166 (334)
T ss_pred EEECcccccc
Confidence 9999999654
No 140
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.55 E-value=2.5e-14 Score=105.85 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=71.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++..|..++++++++|+|+|+ ++..+......| ..+.. .++|+++++||+|+....
T Consensus 71 l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~----------~~~~~~~~~~~~-~~~~~----~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 71 LIDTPGHVDFSYEVSRSLAACEGALLLVDA----------TQGVEAQTLANF-YLALE----NNLEIIPVINKIDLPSAD 135 (179)
T ss_pred EEECCCChhhHHHHHHHHHhcCeEEEEEEC----------CCCccHhhHHHH-HHHHH----cCCCEEEEEECCCCCcCC
Confidence 699999999999999999999999999999 444333333223 23222 367999999999985421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ... .+ +.+. .. . ....++++||++|.||+++|+++.
T Consensus 136 ~~---~~~-----------------------------~~-~~~~----~~---~--~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (179)
T cd01890 136 PE---RVK-----------------------------QQ-IEDV----LG---L--DPSEAILVSAKTGLGVEDLLEAIV 173 (179)
T ss_pred HH---HHH-----------------------------HH-HHHH----hC---C--CcccEEEeeccCCCCHHHHHHHHH
Confidence 11 000 00 1111 01 0 112467999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 174 ~~~ 176 (179)
T cd01890 174 ERI 176 (179)
T ss_pred hhC
Confidence 754
No 141
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.53 E-value=3.6e-14 Score=103.93 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=81.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+||++||+.+...+..+++.++++++|+|+ ++..++..... |+..+... ..+.|+++++||+|+...
T Consensus 52 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 52 LWDTAGQEEYDRLRPLSYPNTDVFLICFSV----------DSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDD 119 (171)
T ss_pred EEeCCCcccccccchhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhc
Confidence 699999999999999999999999999999 78888887765 44444433 237999999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
.-. . .+. .+.. . .-..+++.++... .....++++||+++.|+.++|+++
T Consensus 120 ~~~-----~-~~~-~~~~-----------~-~v~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 120 ENT-----L-KKL-EKGK-----------E-PITPEEGEKLAKE------------IGAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred hhh-----h-hhc-ccCC-----------C-ccCHHHHHHHHHH------------hCCeEEEEeecCCCCCHHHHHHHH
Confidence 321 0 111 0000 0 0012333433221 122378899999999999999988
Q ss_pred HH
Q psy12099 160 RD 161 (174)
Q Consensus 160 ~~ 161 (174)
.+
T Consensus 169 ~~ 170 (171)
T cd00157 169 IR 170 (171)
T ss_pred hh
Confidence 65
No 142
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=105.60 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=84.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|..|+++++++++|+|. ....++.+....|...+........|+++++||+|++.+.
T Consensus 58 ~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~----------~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 58 LWDTAGQEEYRSLRPEYYRGANGILIVYDS----------TLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred eecCCCHHHHHHHHHHHhcCCCEEEEEEec----------ccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 699999999999999999999999999999 6766666665444444444333578999999999999765
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc--cchhHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV--DTENIRRVFND 158 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~--d~~~i~~~f~~ 158 (174)
.. ...+...+. .. ..+.....+.. .. ...... +.++||+ .+.+|.++|..
T Consensus 128 ~~--~~~~~~~~~--~~--------------~~~~~~~~~~~------~~---~~~~~~-~~~~s~~~~~~~~v~~~~~~ 179 (219)
T COG1100 128 SS--SEEILNQLN--RE--------------VVLLVLAPKAV------LP---EVANPA-LLETSAKSLTGPNVNELFKE 179 (219)
T ss_pred hH--HHHHHhhhh--cC--------------cchhhhHhHHh------hh---hhcccc-eeEeecccCCCcCHHHHHHH
Confidence 33 111111100 00 00111111110 00 011223 6789999 99999999999
Q ss_pred HHHHHHHh
Q psy12099 159 CRDIIQRM 166 (174)
Q Consensus 159 ~~~~i~~~ 166 (174)
+...+...
T Consensus 180 ~~~~~~~~ 187 (219)
T COG1100 180 LLRKLLEE 187 (219)
T ss_pred HHHHHHHh
Confidence 99888654
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.45 E-value=5e-13 Score=97.01 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=68.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+++......++++++++|+|+|+ ++ ....++...+..+ .. ....|+++++||+|+..+.
T Consensus 55 ~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~----------~~-~~~~~~~~~~~~~-~~--~~~~~~ilv~NK~Dl~~~~ 120 (164)
T cd04171 55 FIDVPGHEKFIKNMLAGAGGIDLVLLVVAA----------DE-GIMPQTREHLEIL-EL--LGIKRGLVVLTKADLVDED 120 (164)
T ss_pred EEECCChHHHHHHHHhhhhcCCEEEEEEEC----------CC-CccHhHHHHHHHH-HH--hCCCcEEEEEECccccCHH
Confidence 699999999988888899999999999999 33 1112222222221 11 1224999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . . ..++..+++ .. .......++++||+++.|++++|+.+.
T Consensus 121 ~~--~-~-------------------------~~~~~~~~~----~~------~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 121 WL--E-L-------------------------VEEEIRELL----AG------TFLADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HH--H-H-------------------------HHHHHHHHH----Hh------cCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 10 0 0 001111111 11 001235678999999999999998875
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
.
T Consensus 163 ~ 163 (164)
T cd04171 163 E 163 (164)
T ss_pred h
Confidence 3
No 144
>KOG4423|consensus
Probab=99.43 E-value=1.7e-13 Score=101.11 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=89.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~ 77 (174)
+||++||++|..+..-||+.+++..+|||+ ++...++.+..|.+++.... ....+|+++++||||..
T Consensus 79 LwdIagQerfg~mtrVyykea~~~~iVfdv----------t~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 79 LWDIAGQERFGNMTRVYYKEAHGAFIVFDV----------TRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred HhcchhhhhhcceEEEEecCCcceEEEEEc----------cccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 699999999999999999999999999999 78889999999999875543 33457999999999986
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
..-..+....+..+.. .+...-..+||||...|+.++-+
T Consensus 149 ~~a~~~~~~~~d~f~k-----------------------------------------engf~gwtets~Kenkni~Ea~r 187 (229)
T KOG4423|consen 149 KSAKNEATRQFDNFKK-----------------------------------------ENGFEGWTETSAKENKNIPEAQR 187 (229)
T ss_pred hHhhhhhHHHHHHHHh-----------------------------------------ccCccceeeeccccccChhHHHH
Confidence 5432200011111111 12234567899999999999999
Q ss_pred HHHHHHHHhh
Q psy12099 158 DCRDIIQRMH 167 (174)
Q Consensus 158 ~~~~~i~~~~ 167 (174)
.+.+.|+.+.
T Consensus 188 ~lVe~~lvnd 197 (229)
T KOG4423|consen 188 ELVEKILVND 197 (229)
T ss_pred HHHHHHHhhc
Confidence 9999988764
No 145
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.40 E-value=9.6e-13 Score=96.34 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=72.2
Q ss_pred CeeCCCCc----hhhhhHhhh---hcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCC-CCCCCcEEEEE
Q psy12099 1 MFDVGGQR----DERRKWIQC---FNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNR-WLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~----~~r~~w~~y---~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~-~~~~~~iilv~ 71 (174)
+|||+|+. .++.++..| +++++++|+|+|. ++. +++.....|.+.+.... ...+.|+++++
T Consensus 52 l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 52 VADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDL----------SGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred EEecCcccCcccccCCchHHHHHHHHhCCEEEEEEec----------CCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 69999973 333344444 4469999999999 666 67777767766665432 23578999999
Q ss_pred eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099 72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN 151 (174)
Q Consensus 72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~ 151 (174)
||+|+...... . +....+.. ......++.+||+++.+
T Consensus 122 NK~Dl~~~~~~------~-------------------------~~~~~~~~------------~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 122 NKIDLLDEEEL------F-------------------------ELLKELLK------------ELWGKPVFPISALTGEG 158 (170)
T ss_pred EchhcCCchhh------H-------------------------HHHHHHHh------------hCCCCCEEEEecCCCCC
Confidence 99998543211 0 11111110 00235677899999999
Q ss_pred HHHHHHHHHHH
Q psy12099 152 IRRVFNDCRDI 162 (174)
Q Consensus 152 i~~~f~~~~~~ 162 (174)
++++|+++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 146
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.39 E-value=1.8e-12 Score=94.78 Aligned_cols=106 Identities=22% Similarity=0.149 Sum_probs=68.7
Q ss_pred CeeCCCCchhhhhHh----------hhhcCCCEEEEEEeCCCccccccCCCCcch--HHHHHHHHHHHHcCCCCCCCcEE
Q psy12099 1 MFDVGGQRDERRKWI----------QCFNDVTAIIFVTACSSYNMVLREDPTQNR--LRESLDLFKSIWNNRWLRTISVI 68 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~----------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~--~~~~~~~~~~i~~~~~~~~~~ii 68 (174)
||||+|+.. +..|. .....++++|+|+|. ++..+ ++....|+..+... ..+.|++
T Consensus 51 i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~----------~~~~~~~~~~~~~~~~~l~~~--~~~~pvi 117 (168)
T cd01897 51 VIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDP----------SETCGYSLEEQLSLFEEIKPL--FKNKPVI 117 (168)
T ss_pred EEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeC----------CcccccchHHHHHHHHHHHhh--cCcCCeE
Confidence 699999842 11111 111236899999999 44443 45556677776433 3578999
Q ss_pred EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc
Q psy12099 69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD 148 (174)
Q Consensus 69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d 148 (174)
+++||+|+...... ....++ . ....+.+++|||++
T Consensus 118 lv~NK~Dl~~~~~~--------------------------------~~~~~~-----~--------~~~~~~~~~~Sa~~ 152 (168)
T cd01897 118 VVLNKIDLLTFEDL--------------------------------SEIEEE-----E--------ELEGEEVLKISTLT 152 (168)
T ss_pred EEEEccccCchhhH--------------------------------HHHHHh-----h--------hhccCceEEEEecc
Confidence 99999999653211 001111 0 11235678999999
Q ss_pred chhHHHHHHHHHHHHH
Q psy12099 149 TENIRRVFNDCRDIIQ 164 (174)
Q Consensus 149 ~~~i~~~f~~~~~~i~ 164 (174)
+.|++++|+++.+.++
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 153 EEGVDEVKNKACELLL 168 (168)
T ss_pred cCCHHHHHHHHHHHhC
Confidence 9999999999988763
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.36 E-value=8.1e-13 Score=94.34 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=63.4
Q ss_pred CeeCCCC-----chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQ-----RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq-----~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D 75 (174)
+|||+|+ +.++.+.. .+++++++|+|+|+ ++..++.. ..|.. .. ..|+++++||+|
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~----------~~~~s~~~-~~~~~-~~------~~p~ilv~NK~D 99 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIV-TAADADVIALVQSA----------TDPESRFP-PGFAS-IF------VKPVIGLVTKID 99 (142)
T ss_pred eecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecC----------CCCCcCCC-hhHHH-hc------cCCeEEEEEeec
Confidence 5999998 34555544 58999999999999 55555433 23322 21 239999999999
Q ss_pred hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099 76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV 155 (174)
Q Consensus 76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~ 155 (174)
+.+.... .+.+.+++.. .....++++||+++.|++++
T Consensus 100 l~~~~~~-------------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 100 LAEADVD-------------------------------IERAKELLET------------AGAEPIFEISSVDEQGLEAL 136 (142)
T ss_pred cCCcccC-------------------------------HHHHHHHHHH------------cCCCcEEEEecCCCCCHHHH
Confidence 8642110 1122233211 01124678999999999999
Q ss_pred HHHHH
Q psy12099 156 FNDCR 160 (174)
Q Consensus 156 f~~~~ 160 (174)
|+++.
T Consensus 137 ~~~l~ 141 (142)
T TIGR02528 137 VDYLN 141 (142)
T ss_pred HHHHh
Confidence 98874
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.35 E-value=1e-11 Score=90.56 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=72.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..+++.++++++|+|.++ .. .......+..+.. .+.|+++++||+|+....
T Consensus 54 iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~----------~~-~~~~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 54 FIDTPGHEAFTNMRARGASLTDIAILVVAADD----------GV-MPQTIEAIKLAKA----ANVPFIVALNKIDKPNAN 118 (168)
T ss_pred EEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC----------Cc-cHHHHHHHHHHHH----cCCCEEEEEEceeccccc
Confidence 69999999999999999999999999999943 21 1122222332221 367999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+...+..+. .. ... .....+.++.+||+++.|+.++|+++.
T Consensus 119 ~~----~~~~~~~~~~-------------------------~~----~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 119 PE----RVKNELSELG-------------------------LQ----GED---EWGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred HH----HHHHHHHHhh-------------------------cc----ccc---cccCcCcEEEeecccCCCHHHHHHHHH
Confidence 11 1111000000 00 000 012346778999999999999999987
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+..
T Consensus 163 ~~~ 165 (168)
T cd01887 163 LLA 165 (168)
T ss_pred Hhh
Confidence 653
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.33 E-value=1.6e-12 Score=97.92 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=65.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++|+..|..|+++++++|+|+|.+ +. .+.....++..+.. .++|+++++||+|+..+.
T Consensus 69 l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~----------~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 69 IVDTPGHADFGGEVERVLSMVDGVLLLVDAS----------EG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred EEECCCcHHHHHHHHHHHHhcCEEEEEEECC----------CC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 6999999999999999999999999999993 31 12233334444332 368999999999996433
Q ss_pred Hhccccchhhhhhc-------cCCCCCCCCCCCCCCCC
Q psy12099 81 VKAGKSRLEDYFQE-------FTRYQTPLDATPDPGED 111 (174)
Q Consensus 81 ~~~~~~~l~~~~~~-------~~~~~~~~~a~~~~g~~ 111 (174)
.......+.+++.. .+.+..++||++|.|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 21001234444422 23456788999998864
No 150
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.32 E-value=9e-12 Score=87.66 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=79.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+..+...|..+++.++++|+|+|+ +...++.....|+..........+.|+++++||+|+....
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDV----------TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 699999999999999999999999999999 7777777777764444444445689999999999986542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . . .... ..+ .....+.++.+||+++.++.++++++.
T Consensus 119 ~~--~-~---------------------------~~~~----~~~--------~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 119 VV--S-E---------------------------EELA----EQL--------AKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ch--H-H---------------------------HHHH----HHH--------HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 11 0 0 0000 000 112346788999999999999999875
No 151
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=1.1e-11 Score=101.17 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=76.3
Q ss_pred CeeCCCCc-------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099 1 MFDVGGQR-------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~-------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N 72 (174)
||||+|.- .....|..+++.++++|+|+|+ ++.+++++...|.+++... +.+.+.|++||+|
T Consensus 210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~----------s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~N 279 (335)
T PRK12299 210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDI----------EAVDPVEDYKTIRNELEKYSPELADKPRILVLN 279 (335)
T ss_pred EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcC----------CCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEE
Confidence 69999973 2344555567789999999999 5555677777777766443 2345789999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+..+... . .+....++. ...+.++++||+++++|
T Consensus 280 KiDL~~~~~~--~----------------------------~~~~~~~~~-------------~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 280 KIDLLDEEEE--R----------------------------EKRAALELA-------------ALGGPVFLISAVTGEGL 316 (335)
T ss_pred CcccCCchhH--H----------------------------HHHHHHHHH-------------hcCCCEEEEEcCCCCCH
Confidence 9998643211 0 001111110 01245778999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12099 153 RRVFNDCRDIIQR 165 (174)
Q Consensus 153 ~~~f~~~~~~i~~ 165 (174)
+++|+++.+.+..
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.32 E-value=8.9e-12 Score=92.40 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=75.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH-
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE- 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~- 79 (174)
+|||+|+..++..|..++++++++|+|+|.+ .... .....++..... .+.|+++++||+|+..+
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~-~~~~~~~~~~~~----~~~~i~iv~nK~D~~~~~ 130 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDAN----------EGVQ-PQTREHLRIARE----GGLPIIVAINKIDRVGEE 130 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECC----------CCCc-HHHHHHHHHHHH----CCCCeEEEEECCCCcchh
Confidence 5999999999999999999999999999993 3222 222333333322 46899999999999752
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
........+.+.+...+.. ...+..+ .......++++||+++.|+.++|..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-------------~~~~~~~v~~~Sa~~g~gi~~l~~~l 182 (189)
T cd00881 131 DLEEVLREIKELLGLIGFI---------------STKEEGT-------------RNGLLVPIVPGSALTGIGVEELLEAI 182 (189)
T ss_pred cHHHHHHHHHHHHcccccc---------------chhhhhc-------------ccCCcceEEEEecccCcCHHHHHHHH
Confidence 1110001122222211100 0000000 11235678899999999999999998
Q ss_pred HHHH
Q psy12099 160 RDII 163 (174)
Q Consensus 160 ~~~i 163 (174)
.+.+
T Consensus 183 ~~~l 186 (189)
T cd00881 183 VEHL 186 (189)
T ss_pred HhhC
Confidence 8764
No 153
>KOG0096|consensus
Probab=99.31 E-value=1.1e-12 Score=96.99 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=89.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|||.+..+...||=...|+|++||+ +.......+..|.++++... .|+||+++|||.|....+
T Consensus 63 ~wdtagqEk~gglrdgyyI~~qcAiimFdV----------tsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 63 VWDTAGQEKKGGLRDGYYIQGQCAIIMFDV----------TSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK 130 (216)
T ss_pred eeecccceeecccccccEEecceeEEEeee----------eehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc
Confidence 599999999999999999999999999999 88888999999999987764 479999999999997765
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..++. | ..++.+.+++.||+..-|....|.+++
T Consensus 131 ~k--~k~v~------------------------------~-------------~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 131 VK--AKPVS------------------------------F-------------HRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred cc--cccce------------------------------e-------------eecccceeEEeecccccccccchHHHh
Confidence 44 22211 1 235668889999999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
..+.
T Consensus 166 rKl~ 169 (216)
T KOG0096|consen 166 RKLT 169 (216)
T ss_pred hhhc
Confidence 7664
No 154
>PRK04213 GTP-binding protein; Provisional
Probab=99.31 E-value=1.4e-11 Score=93.11 Aligned_cols=120 Identities=13% Similarity=0.205 Sum_probs=68.9
Q ss_pred CeeCCC-----------CchhhhhHhhhhc-C---CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC
Q psy12099 1 MFDVGG-----------QRDERRKWIQCFN-D---VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI 65 (174)
Q Consensus 1 iwD~~G-----------q~~~r~~w~~y~~-~---~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~ 65 (174)
+|||+| +++++..|.+|++ + ++++++|+|.+.+......-............+..+ .. .++
T Consensus 56 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~---~~~ 131 (201)
T PRK04213 56 LTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL-RE---LGI 131 (201)
T ss_pred EEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH-HH---cCC
Confidence 699999 8999999999986 3 468888888854432110000000111112222222 21 368
Q ss_pred cEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcc--eeeee
Q psy12099 66 SVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHY--CYPHF 143 (174)
Q Consensus 66 ~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~--~~~~~ 143 (174)
|+++++||+|+.... . ....++ .+.+. +.. ..+. ..++.
T Consensus 132 p~iiv~NK~Dl~~~~-~---~~~~~~------------------------------~~~~~-~~~----~~~~~~~~~~~ 172 (201)
T PRK04213 132 PPIVAVNKMDKIKNR-D---EVLDEI------------------------------AERLG-LYP----PWRQWQDIIAP 172 (201)
T ss_pred CeEEEEECccccCcH-H---HHHHHH------------------------------HHHhc-CCc----cccccCCcEEE
Confidence 999999999986432 1 011111 01000 000 0011 24678
Q ss_pred cccccchhHHHHHHHHHHHHH
Q psy12099 144 TCAVDTENIRRVFNDCRDIIQ 164 (174)
Q Consensus 144 tsA~d~~~i~~~f~~~~~~i~ 164 (174)
+||+++ ||+++|+++.+.+-
T Consensus 173 ~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 173 ISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred EecccC-CHHHHHHHHHHhhc
Confidence 999999 99999999988764
No 155
>KOG1673|consensus
Probab=99.31 E-value=2e-11 Score=87.87 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=85.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||+|||++++.+-+.-..++-+++|+||+ +.+.++....+|+++..... +..--+|+|+|.|++-..
T Consensus 73 IwdlgG~~~~~n~lPiac~dsvaIlFmFDL----------t~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~l 140 (205)
T KOG1673|consen 73 IWDLGGQREFINMLPIACKDSVAILFMFDL----------TRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDL 140 (205)
T ss_pred EEecCCcHhhhccCceeecCcEEEEEEEec----------CchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcC
Confidence 799999999999999999999999999999 89999999999999976532 233335779999987542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+ ..+ . .+....|+.|.+. -....+++||....||+.+|.-+.
T Consensus 141 -p---~e~-------Q--------------~~I~~qar~YAk~-------------mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 141 -P---PEL-------Q--------------ETISRQARKYAKV-------------MNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred -C---HHH-------H--------------HHHHHHHHHHHHH-------------hCCcEEEeeccccccHHHHHHHHH
Confidence 1 111 1 0123345555321 123567899999999999999988
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
..+++
T Consensus 183 AklFn 187 (205)
T KOG1673|consen 183 AKLFN 187 (205)
T ss_pred HHHhC
Confidence 87764
No 156
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.30 E-value=2.1e-11 Score=92.78 Aligned_cols=111 Identities=13% Similarity=0.012 Sum_probs=69.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.+..-+.....+++++|+|+|. ++......+...+..+.. ....|++|++||+|+..+.
T Consensus 87 ~iDtPG~~~~~~~~~~~~~~~D~~llVvd~----------~~~~~~~~t~~~l~~~~~---~~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 87 FVDCPGHEILMATMLSGAAVMDGALLLIAA----------NEPCPQPQTSEHLAALEI---MGLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred EEECCChHHHHHHHHHhhhcCCEEEEEEEC----------CCCCCCcchHHHHHHHHH---cCCCcEEEEEEchhccCHH
Confidence 699999999999888888999999999999 332111111222222211 1225799999999996531
Q ss_pred -HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 81 -VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 81 -~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
.. ...+.+...+... ....+.++.+||++++||+++|+.+
T Consensus 154 ~~~---------------------------------~~~~~i~~~~~~~------~~~~~~i~~vSA~~g~gi~~L~~~l 194 (203)
T cd01888 154 QAL---------------------------------ENYEQIKKFVKGT------IAENAPIIPISAQLKYNIDVLLEYI 194 (203)
T ss_pred HHH---------------------------------HHHHHHHHHHhcc------ccCCCcEEEEeCCCCCCHHHHHHHH
Confidence 11 0111111111110 0123557789999999999999998
Q ss_pred HHHH
Q psy12099 160 RDII 163 (174)
Q Consensus 160 ~~~i 163 (174)
.+.+
T Consensus 195 ~~~l 198 (203)
T cd01888 195 VKKI 198 (203)
T ss_pred HHhC
Confidence 7644
No 157
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.28 E-value=1.6e-11 Score=88.55 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=67.9
Q ss_pred CeeCCCCchhhh------hHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERR------KWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~------~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|++.+.. ++..++. +++++|+|+|. .+.+. ...++..+.. .+.|+++++|
T Consensus 47 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~----------~~~~~---~~~~~~~~~~----~~~~~iiv~N 109 (158)
T cd01879 47 IVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDA----------TNLER---NLYLTLQLLE----LGLPVVVALN 109 (158)
T ss_pred EEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeC----------Ccchh---HHHHHHHHHH----cCCCEEEEEe
Confidence 699999988765 4777885 99999999999 44332 2234444433 2689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+...... ... . ..+ .. ...+.++++||.++.|+
T Consensus 110 K~Dl~~~~~~--~~~--------------------------~---~~~-~~------------~~~~~~~~iSa~~~~~~ 145 (158)
T cd01879 110 MIDEAEKRGI--KID--------------------------L---DKL-SE------------LLGVPVVPTSARKGEGI 145 (158)
T ss_pred hhhhcccccc--hhh--------------------------H---HHH-HH------------hhCCCeEEEEccCCCCH
Confidence 9998643211 000 0 011 11 01245779999999999
Q ss_pred HHHHHHHHHH
Q psy12099 153 RRVFNDCRDI 162 (174)
Q Consensus 153 ~~~f~~~~~~ 162 (174)
.++|+.+...
T Consensus 146 ~~l~~~l~~~ 155 (158)
T cd01879 146 DELKDAIAEL 155 (158)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 158
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.27 E-value=7.2e-12 Score=95.42 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=58.5
Q ss_pred CeeCCCCchhhhhHhhhhcCC-CEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDV-TAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNRWL--RTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~-~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~~~--~~~~iilv~NK~Dl 76 (174)
|||++||+++|..|..|++++ +++|||+|. ++. +++.++..++..++..... .++|++|++||+|+
T Consensus 52 l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~----------~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl 121 (203)
T cd04105 52 LVDVPGHPKLRDKLLETLKNSAKGIVFVVDS----------ATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDL 121 (203)
T ss_pred EEECCCCHHHHHHHHHHHhccCCEEEEEEEC----------ccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhh
Confidence 699999999999999999999 999999999 555 7788888888777654322 57899999999999
Q ss_pred hhH
Q psy12099 77 LAE 79 (174)
Q Consensus 77 ~~~ 79 (174)
+.+
T Consensus 122 ~~a 124 (203)
T cd04105 122 FTA 124 (203)
T ss_pred ccc
Confidence 754
No 159
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.27 E-value=2.1e-11 Score=86.86 Aligned_cols=105 Identities=23% Similarity=0.177 Sum_probs=73.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+||++|++.++.+|..+++.+.++++++|++ .. .++.... .+...+..... .+.|+++++||+|+..
T Consensus 54 ~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~----------~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 54 LLDTAGQEDYRAIRRLYYRAVESSLRVFDIV----------ILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRD 122 (161)
T ss_pred EEECCCcccchHHHHHHHhhhhEEEEEEEEe----------eeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCc
Confidence 5999999999999999999999999999994 33 4555544 44444433322 2789999999999965
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
.... ......++. .....++++||+++.++.++|+.
T Consensus 123 ~~~~---~~~~~~~~~-----------------------------------------~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 123 AKLK---THVAFLFAK-----------------------------------------LNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred chhh---HHHHHHHhh-----------------------------------------ccCCceEEeecCCCCCHHHHHHH
Confidence 4311 111111111 11234779999999999999988
Q ss_pred HH
Q psy12099 159 CR 160 (174)
Q Consensus 159 ~~ 160 (174)
+.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 74
No 160
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.24 E-value=2.9e-11 Score=88.54 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=66.5
Q ss_pred CeeCCCCchhhhhHh----hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWI----QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~----~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
+|||+|+...+..|. ..+++++++|+|+|. ++..++.. .|+..+ ..+.|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~----------~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA----------NDPESRLP--AGLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC----------CCcccccC--HHHHhc-----cCCCCeEEEEEcccc
Confidence 599999843333332 237899999999999 44433211 233332 135799999999998
Q ss_pred hhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099 77 LAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF 156 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f 156 (174)
..... +.+.+++... .-...++++||++++||.++|
T Consensus 104 ~~~~~---------------------------------~~~~~~~~~~-----------~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 104 PDADV---------------------------------AATRKLLLET-----------GFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred CcccH---------------------------------HHHHHHHHHc-----------CCCCCEEEEECCCccCHHHHH
Confidence 54211 1122222110 111467889999999999999
Q ss_pred HHHHHHHHHh
Q psy12099 157 NDCRDIIQRM 166 (174)
Q Consensus 157 ~~~~~~i~~~ 166 (174)
+.+.+.+.+.
T Consensus 140 ~~l~~~~~~~ 149 (158)
T PRK15467 140 DYLASLTKQE 149 (158)
T ss_pred HHHHHhchhh
Confidence 9998876543
No 161
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.24 E-value=6.1e-11 Score=87.03 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=71.9
Q ss_pred CeeCCCCc----hhhhhH---hhhhcCCCEEEEEEeCCCccccccCCCCc------chHHHHHHHHHHHHcCCC------
Q psy12099 1 MFDVGGQR----DERRKW---IQCFNDVTAIIFVTACSSYNMVLREDPTQ------NRLRESLDLFKSIWNNRW------ 61 (174)
Q Consensus 1 iwD~~Gq~----~~r~~w---~~y~~~~~~ii~v~d~s~~~~~~~e~~~~------~~~~~~~~~~~~i~~~~~------ 61 (174)
+|||+|+. ..+.++ ..++++++++++|+|. .+. +++.+...|...+.....
T Consensus 48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (176)
T cd01881 48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDA----------SEDDDIGGVDPLEDYEILNAELKLYDLETILGL 117 (176)
T ss_pred EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEec----------cCCccccccCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 69999973 223333 3457889999999999 555 566666666666654332
Q ss_pred CCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceee
Q psy12099 62 LRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYP 141 (174)
Q Consensus 62 ~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~ 141 (174)
..+.|+++++||+|+...... ..+ ..... .......+
T Consensus 118 ~~~~p~ivv~NK~Dl~~~~~~------~~~-----------------------------~~~~~--------~~~~~~~~ 154 (176)
T cd01881 118 LTAKPVIYVLNKIDLDDAEEL------EEE-----------------------------LVREL--------ALEEGAEV 154 (176)
T ss_pred HhhCCeEEEEEchhcCchhHH------HHH-----------------------------HHHHH--------hcCCCCCE
Confidence 247899999999999653211 000 00000 11223557
Q ss_pred eecccccchhHHHHHHHHHHH
Q psy12099 142 HFTCAVDTENIRRVFNDCRDI 162 (174)
Q Consensus 142 ~~tsA~d~~~i~~~f~~~~~~ 162 (174)
+.+||+++.+++++++.+...
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEehhhhcCHHHHHHHHHhh
Confidence 899999999999999988654
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.23 E-value=3.1e-11 Score=105.20 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=48.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|++.|...|..++++++++|+|+|. ++.........|.. ... .+.|+++++||+|+..
T Consensus 74 liDTPG~~dF~~~v~~~l~~aD~aILVvDa----------t~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 74 LIDTPGHVDFSYEVSRSLAACEGALLLVDA----------AQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPS 136 (595)
T ss_pred EEECCCcHHHHHHHHHHHHhCCEEEEEecC----------CCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCc
Confidence 699999999999999999999999999999 44433333333332 222 3679999999999864
No 163
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.22 E-value=5.7e-11 Score=87.65 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=73.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
++||.||+||+.+|..+++++.++|+++|. +....+ +....++-+... ..+|++++.||+||+...
T Consensus 72 LfgtPGq~RF~fm~~~l~~ga~gaivlVDs----------s~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 72 LFGTPGQERFKFMWEILSRGAVGAIVLVDS----------SRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDAL 137 (187)
T ss_pred EecCCCcHHHHHHHHHHhCCcceEEEEEec----------CCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCC
Confidence 579999999999999999999999999999 666666 444444433211 128999999999998764
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
-+ +.+.++ .+. ....+.+..++|+++++.++.+..+.
T Consensus 138 pp---e~i~e~--------------------------l~~--------------~~~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 138 PP---EKIREA--------------------------LKL--------------ELLSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred CH---HHHHHH--------------------------HHh--------------ccCCCceeeeecccchhHHHHHHHHH
Confidence 21 222221 111 11346777889999988888777665
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
..
T Consensus 175 ~~ 176 (187)
T COG2229 175 LK 176 (187)
T ss_pred hh
Confidence 43
No 164
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.22 E-value=6e-11 Score=96.63 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=71.5
Q ss_pred CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N 72 (174)
||||+|+.. ....|..+++.++++|+|+|+++.+ ..+.++....|.+++... +.+.+.|++||+|
T Consensus 209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~-------~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLD-------GRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcccc-------ccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 699999842 3344555567899999999994221 114555555555555332 2345789999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+..+... +...+.+.+. ..+.++.+||+++++|
T Consensus 282 K~DL~~~~~~--------------------------------~~~~~~l~~~------------~~~~vi~iSAktg~GI 317 (329)
T TIGR02729 282 KIDLLDEEEL--------------------------------AELLKELKKA------------LGKPVFPISALTGEGL 317 (329)
T ss_pred CccCCChHHH--------------------------------HHHHHHHHHH------------cCCcEEEEEccCCcCH
Confidence 9998654211 0111111110 1145778999999999
Q ss_pred HHHHHHHHHHH
Q psy12099 153 RRVFNDCRDII 163 (174)
Q Consensus 153 ~~~f~~~~~~i 163 (174)
+++|+++.+.+
T Consensus 318 ~eL~~~I~~~l 328 (329)
T TIGR02729 318 DELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 165
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.22 E-value=5.1e-11 Score=103.48 Aligned_cols=136 Identities=8% Similarity=-0.036 Sum_probs=77.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.|+.+|..+++.++++|+|+|.++= ....++ +.+..+ .. .+.|+++++||+|+....
T Consensus 73 ~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-------~~~qt~----e~i~~l-~~---~~vpiIVv~NK~Dl~~~~ 137 (590)
T TIGR00491 73 FIDTPGHEAFTNLRKRGGALADLAILIVDINEG-------FKPQTQ----EALNIL-RM---YKTPFVVAANKIDRIPGW 137 (590)
T ss_pred EEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-------CCHhHH----HHHHHH-HH---cCCCEEEEEECCCccchh
Confidence 599999999999999999999999999999310 012222 222222 11 368999999999997432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhc------CCCCCcceeeeecccccchhHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTA------SGDGKHYCYPHFTCAVDTENIRR 154 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~------~~~~~~~~~~~~tsA~d~~~i~~ 154 (174)
.. ..-..++ .++|+.+......+++....+...+....-. ...-...+.+..+||++|+|+.+
T Consensus 138 ~~---~~~~~f~--------e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGide 206 (590)
T TIGR00491 138 RS---HEGRPFM--------ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPE 206 (590)
T ss_pred hh---ccCchHH--------HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhH
Confidence 11 0001111 1122222122222222222222222211000 00112346788999999999999
Q ss_pred HHHHHHHH
Q psy12099 155 VFNDCRDI 162 (174)
Q Consensus 155 ~f~~~~~~ 162 (174)
+++++...
T Consensus 207 Ll~~l~~l 214 (590)
T TIGR00491 207 LLTMLAGL 214 (590)
T ss_pred HHHHHHHH
Confidence 99887653
No 166
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.21 E-value=7.4e-11 Score=89.38 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=68.3
Q ss_pred CeeCCCC---------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQ---------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq---------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~ 71 (174)
+|||+|+ +.++..+ ..+.+++++++|+|. ++..++.....|... +......+.|+++|+
T Consensus 93 i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~----------~~~~~~~~~~~~~~~-l~~~~~~~~~viiV~ 160 (204)
T cd01878 93 LTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDA----------SDPDYEEQIETVEKV-LKELGAEDIPMILVL 160 (204)
T ss_pred EeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEEC----------CCCChhhHHHHHHHH-HHHcCcCCCCEEEEE
Confidence 6999998 3344443 346789999999999 566665554333333 333234568999999
Q ss_pred eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099 72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN 151 (174)
Q Consensus 72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~ 151 (174)
||+|+..+... . .. .......++++||+++.|
T Consensus 161 NK~Dl~~~~~~--~----~~------------------------------------------~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 161 NKIDLLDDEEL--E----ER------------------------------------------LEAGRPDAVFISAKTGEG 192 (204)
T ss_pred EccccCChHHH--H----HH------------------------------------------hhcCCCceEEEEcCCCCC
Confidence 99998654321 0 00 001224567999999999
Q ss_pred HHHHHHHHHHH
Q psy12099 152 IRRVFNDCRDI 162 (174)
Q Consensus 152 i~~~f~~~~~~ 162 (174)
+.++|+++.+.
T Consensus 193 i~~l~~~L~~~ 203 (204)
T cd01878 193 LDELLEAIEEL 203 (204)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 167
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.21 E-value=2.3e-10 Score=86.08 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=66.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+..+.+........++++|+|+|.+ +....... +.+. +... .+.|+++++||+|+....
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~----------~~~~~~~~-~~~~-~~~~---~~~~~iiv~NK~Dl~~~~ 136 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDAT----------KGIQTQTA-ECLV-IGEI---LCKKLIVVLNKIDLIPEE 136 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECC----------CCccHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHH
Confidence 6999999654222222335678999999993 32221111 1111 1111 256999999999986422
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . ...++..+.+...+... ....+.++.+||+++.|+.++++++.
T Consensus 137 ~~--~--------------------------~~~~~~~~~l~~~~~~~------~~~~~~vi~iSa~~g~gi~~L~~~l~ 182 (192)
T cd01889 137 ER--E--------------------------RKIEKMKKKLQKTLEKT------RFKNSPIIPVSAKPGGGEAELGKDLN 182 (192)
T ss_pred HH--H--------------------------HHHHHHHHHHHHHHHhc------CcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 11 0 01122222222222211 11346678999999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.|.
T Consensus 183 ~~~~ 186 (192)
T cd01889 183 NLIV 186 (192)
T ss_pred hccc
Confidence 8764
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.20 E-value=1.2e-10 Score=97.73 Aligned_cols=110 Identities=13% Similarity=0.234 Sum_probs=68.7
Q ss_pred CeeCCCCchhhhhH-----------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRDERRKW-----------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r~~w-----------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|+++.+..+ ..+++.++++|+|+|. ++..+..+ ..++..+.. .+.|+++
T Consensus 224 liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~----------~~~~~~~~-~~~~~~~~~----~~~~iii 288 (429)
T TIGR03594 224 LIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDA----------TEGITEQD-LRIAGLILE----AGKALVI 288 (429)
T ss_pred EEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCccHHH-HHHHHHHHH----cCCcEEE
Confidence 69999987765443 3468899999999999 44433333 234444432 3689999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
++||+|+...... .+...+.+...+. .-..+.++++||++|
T Consensus 289 v~NK~Dl~~~~~~-------------------------------~~~~~~~~~~~~~--------~~~~~~vi~~SA~~g 329 (429)
T TIGR03594 289 VVNKWDLVKDEKT-------------------------------REEFKKELRRKLP--------FLDFAPIVFISALTG 329 (429)
T ss_pred EEECcccCCCHHH-------------------------------HHHHHHHHHHhcc--------cCCCCceEEEeCCCC
Confidence 9999999721100 1111111211111 112256678899999
Q ss_pred hhHHHHHHHHHHHHH
Q psy12099 150 ENIRRVFNDCRDIIQ 164 (174)
Q Consensus 150 ~~i~~~f~~~~~~i~ 164 (174)
.||.++|+++.+...
T Consensus 330 ~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 330 QGVDKLLDAIDEVYE 344 (429)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988887654
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.18 E-value=2.1e-10 Score=97.64 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=69.8
Q ss_pred CeeCCCC----------chhhhhH-hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQ----------RDERRKW-IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq----------~~~r~~w-~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|+ +.++.+. ..++++++++|+|+|. ++..+..+. .++..+.. .+.|++|
T Consensus 263 l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da----------~~~~s~~~~-~~~~~~~~----~~~piIi 327 (472)
T PRK03003 263 FVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDA----------SEPISEQDQ-RVLSMVIE----AGRALVL 327 (472)
T ss_pred EEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeC----------CCCCCHHHH-HHHHHHHH----cCCCEEE
Confidence 6999996 4444443 3467899999999999 565555544 44555443 3689999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
|+||+|+..+... ..+. +-+...+ .......++++||++|
T Consensus 328 V~NK~Dl~~~~~~---~~~~-----------------------------~~i~~~l--------~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 328 AFNKWDLVDEDRR---YYLE-----------------------------REIDREL--------AQVPWAPRVNISAKTG 367 (472)
T ss_pred EEECcccCChhHH---HHHH-----------------------------HHHHHhc--------ccCCCCCEEEEECCCC
Confidence 9999999642111 0000 0011100 0111234578999999
Q ss_pred hhHHHHHHHHHHHHHH
Q psy12099 150 ENIRRVFNDCRDIIQR 165 (174)
Q Consensus 150 ~~i~~~f~~~~~~i~~ 165 (174)
.||+++|+.+.+.+.+
T Consensus 368 ~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 368 RAVDKLVPALETALES 383 (472)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999876643
No 170
>KOG0077|consensus
Probab=99.18 E-value=3e-11 Score=87.73 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=92.1
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV 81 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~ 81 (174)
+|+||+..-|+.|..||-.+++++|.+|. -+.+|+.+++..++.++....+.++|+++++||.|.+....
T Consensus 69 ~DLGGH~qArr~wkdyf~~v~~iv~lvda----------~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 69 FDLGGHLQARRVWKDYFPQVDAIVYLVDA----------YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred EccccHHHHHHHHHHHHhhhceeEeeeeh----------hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 79999999999999999999999999999 89999999999999999998899999999999999987542
Q ss_pred hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHH
Q psy12099 82 KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRD 161 (174)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~ 161 (174)
+ .+++-.+.-++. .+|.|.. .......+++.++.+|...+.+--+.|.|+..
T Consensus 139 e---~~l~~~l~l~~~-------t~~~~~v------------------~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 139 E---DELRFHLGLSNF-------TTGKGKV------------------NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred H---HHHHHHHHHHHH-------hcccccc------------------cccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 2 233222211110 0011100 00013456788889999999888888887765
Q ss_pred H
Q psy12099 162 I 162 (174)
Q Consensus 162 ~ 162 (174)
.
T Consensus 191 y 191 (193)
T KOG0077|consen 191 Y 191 (193)
T ss_pred h
Confidence 4
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.12 E-value=2.4e-10 Score=97.30 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=45.4
Q ss_pred CeeCCCCc--------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQR--------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~--------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|++ .++..+..++++++++|||+|. ++..+... ..+... +.. .+.|++||+|
T Consensus 90 l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~----------~~~~s~~~-~~i~~~-l~~---~~~piilV~N 154 (472)
T PRK03003 90 VVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDA----------TVGATATD-EAVARV-LRR---SGKPVILAAN 154 (472)
T ss_pred EEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCCCHHH-HHHHHH-HHH---cCCCEEEEEE
Confidence 69999987 3566788899999999999999 44433322 222322 222 4689999999
Q ss_pred CCchhh
Q psy12099 73 KQDLLA 78 (174)
Q Consensus 73 K~Dl~~ 78 (174)
|+|+..
T Consensus 155 K~Dl~~ 160 (472)
T PRK03003 155 KVDDER 160 (472)
T ss_pred CccCCc
Confidence 999853
No 172
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.12 E-value=6.1e-10 Score=88.33 Aligned_cols=135 Identities=15% Similarity=0.073 Sum_probs=76.4
Q ss_pred CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|....+ +.+..+++++|++++|+|. ++..+.. ..+...+.. .+.|+++++|
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~----------~~~~~~~---~~i~~~l~~---~~~p~ilV~N 115 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDS----------DQWNGDG---EFVLTKLQN---LKRPVVLTRN 115 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCchH---HHHHHHHHh---cCCCEEEEEE
Confidence 59999985421 2245678999999999999 4444432 222222322 3689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCC-CCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTR-YQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN 151 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~-~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~ 151 (174)
|+|+...... ...+..+....+. ...+.||++|.|.++..+...++ ....++++.....+|...
T Consensus 116 K~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~-------------l~~~~~~~~~~~~t~~~~ 180 (270)
T TIGR00436 116 KLDNKFKDKL--LPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVH-------------LPEGPFRYPEDYVTDQPD 180 (270)
T ss_pred CeeCCCHHHH--HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHh-------------CCCCCCCCCCcccCCCCH
Confidence 9999643211 1122222222221 46889999998866554444433 223445555555555544
Q ss_pred HHHHHHHHHHHHHHh
Q psy12099 152 IRRVFNDCRDIIQRM 166 (174)
Q Consensus 152 i~~~f~~~~~~i~~~ 166 (174)
-..+=+-+++.++..
T Consensus 181 ~~~~~e~ire~~~~~ 195 (270)
T TIGR00436 181 RFKISEIIREKIIRY 195 (270)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344445555443
No 173
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.12 E-value=1.8e-10 Score=90.28 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=46.6
Q ss_pred chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 8 RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 8 ~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
++++.+.+.|+++++++++|+|+ +++. ++.....|+..+ .. .++|++|++||+||..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~----------~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSA----------VLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLD 81 (245)
T ss_pred cccceEECcccccCCEEEEEEEC----------CCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCC
Confidence 78888999999999999999999 6555 777776776654 22 5789999999999964
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.09 E-value=2.4e-10 Score=99.35 Aligned_cols=109 Identities=11% Similarity=0.141 Sum_probs=70.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.|..+|..+++.+|++|+|+|. ++. ....+.+.+.... ..++|+++++||+|+....
T Consensus 139 ~iDTPGhe~F~~~r~rga~~aDiaILVVda----------~dg-v~~qT~e~i~~~~----~~~vPiIVviNKiDl~~~~ 203 (587)
T TIGR00487 139 FLDTPGHEAFTSMRARGAKVTDIVVLVVAA----------DDG-VMPQTIEAISHAK----AANVPIIVAINKIDKPEAN 203 (587)
T ss_pred EEECCCCcchhhHHHhhhccCCEEEEEEEC----------CCC-CCHhHHHHHHHHH----HcCCCEEEEEECcccccCC
Confidence 699999999999999999999999999998 321 2223333333321 2468999999999986421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ..+.+.+.+++ +.... ......+..+||++|.||.++|+++.
T Consensus 204 ~----e~v~~~L~~~g-----------------------~~~~~----------~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 204 P----DRVKQELSEYG-----------------------LVPED----------WGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred H----HHHHHHHHHhh-----------------------hhHHh----------cCCCceEEEEECCCCCChHHHHHhhh
Confidence 1 11111111111 00000 01224567899999999999998886
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
.
T Consensus 247 ~ 247 (587)
T TIGR00487 247 L 247 (587)
T ss_pred h
Confidence 4
No 175
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.09 E-value=3.6e-10 Score=98.64 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=47.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|++.|...|..+++.++++|+|+|. ++....... ..+..... .+.|+++|+||+|+..
T Consensus 78 LiDTPGh~dF~~~v~~sl~~aD~aILVVDa----------s~gv~~qt~-~~~~~~~~----~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 78 LIDTPGHVDFSYEVSRSLAACEGALLVVDA----------SQGVEAQTL-ANVYLALE----NDLEIIPVLNKIDLPA 140 (600)
T ss_pred EEECCCcHHHHHHHHHHHHHCCEEEEEEEC----------CCCCCHHHH-HHHHHHHH----CCCCEEEEEECCCCCc
Confidence 699999999999999999999999999999 343222222 22222222 3679999999999864
No 176
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.08 E-value=9.4e-11 Score=81.14 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=51.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHH---HHHHHcCCCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDL---FKSIWNNRWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~---~~~i~~~~~~~~~~iilv~NK~D 75 (174)
+||++|++.+...|..++.+++++|+|||+ ++..++..+..+ +..+... ..++|++|++||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~----------s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDL----------SDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEEC----------CGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcC----------CChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 599999999999999889999999999999 788888887444 5554332 34699999999998
No 177
>PRK15494 era GTPase Era; Provisional
Probab=99.08 E-value=4.8e-10 Score=91.76 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=70.8
Q ss_pred CeeCCCCc-hhhhhH-------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQR-DERRKW-------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~-~~r~~w-------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~ 71 (174)
+|||+|+. .+..+- ..++++++++|||+|.+ + ++.+.. .++..+ .. .+.|.+||+
T Consensus 104 ~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~----------~--s~~~~~~~il~~l-~~---~~~p~IlVi 167 (339)
T PRK15494 104 LYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSL----------K--SFDDITHNILDKL-RS---LNIVPIFLL 167 (339)
T ss_pred EEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECC----------C--CCCHHHHHHHHHH-Hh---cCCCEEEEE
Confidence 69999994 222221 13478999999999983 2 222222 233333 22 245778899
Q ss_pred eCCchhhHHHhccccchhhhhhccC--CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 72 NKQDLLAEKVKAGKSRLEDYFQEFT--RYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 72 NK~Dl~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
||+|+..+.. ..+.+++.... ....++||++|.|.++.++...++ ....+.++...-.+|.
T Consensus 168 NKiDl~~~~~----~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~-------------l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 168 NKIDIESKYL----NDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSK-------------AKISPWLYAEDDITDL 230 (339)
T ss_pred EhhcCccccH----HHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHh-------------CCCCCCCCCCCCCCCC
Confidence 9999864321 23444443332 235678888887754444333332 2344555554444443
Q ss_pred hhHHHH-HHHHHHHHHHh
Q psy12099 150 ENIRRV-FNDCRDIIQRM 166 (174)
Q Consensus 150 ~~i~~~-f~~~~~~i~~~ 166 (174)
..+.. =+-|++.++..
T Consensus 231 -~~~~~~~eiiRe~~~~~ 247 (339)
T PRK15494 231 -PMRFIAAEITREQLFLN 247 (339)
T ss_pred -CHHHHHHHHHHHHHHhh
Confidence 33333 33355555543
No 178
>KOG3883|consensus
Probab=99.08 E-value=9.2e-10 Score=79.18 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=84.2
Q ss_pred CeeCCCCchh-hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDE-RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~-r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
++||+|-..+ ..+-.|||+-+|+.++|||. .+.++|+....+-..+-....-+.+||++++||.|+-+.
T Consensus 64 lyDTaGlq~~~~eLprhy~q~aDafVLVYs~----------~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 64 LYDTAGLQGGQQELPRHYFQFADAFVLVYSP----------MDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred EeecccccCchhhhhHhHhccCceEEEEecC----------CCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 5899998877 66788999999999999999 788888876555555544555567999999999999654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... +.+-|..| +++..+..++++|+|...+-+-|..+
T Consensus 134 ~~v------------------------------d~d~A~~W-------------a~rEkvkl~eVta~dR~sL~epf~~l 170 (198)
T KOG3883|consen 134 REV------------------------------DMDVAQIW-------------AKREKVKLWEVTAMDRPSLYEPFTYL 170 (198)
T ss_pred hhc------------------------------CHHHHHHH-------------HhhhheeEEEEEeccchhhhhHHHHH
Confidence 322 12234455 23345778899999999999999998
Q ss_pred HHHHH
Q psy12099 160 RDIIQ 164 (174)
Q Consensus 160 ~~~i~ 164 (174)
...+-
T Consensus 171 ~~rl~ 175 (198)
T KOG3883|consen 171 ASRLH 175 (198)
T ss_pred HHhcc
Confidence 87654
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.08 E-value=3.5e-09 Score=79.46 Aligned_cols=112 Identities=16% Similarity=0.255 Sum_probs=74.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
++|++|+..|......-.+.+|++|+|+|. .+.-. ....+.+..+.. .+.|+++++||+|+....
T Consensus 74 ~iDtPG~~~f~~~~~~~~~~~D~ailvVda----------~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~ 138 (188)
T PF00009_consen 74 LIDTPGHEDFIKEMIRGLRQADIAILVVDA----------NDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIEKE 138 (188)
T ss_dssp EEEESSSHHHHHHHHHHHTTSSEEEEEEET----------TTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSHHH
T ss_pred ecccccccceeecccceecccccceeeeec----------ccccc-cccccccccccc----cccceEEeeeeccchhhh
Confidence 579999999999888889999999999999 33222 233444444432 367899999999998544
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCC-cceeeeecccccchhHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGK-HYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~-~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
.. +..+-+...+..... ... ..+.+..+||+.|.|+.++++.+
T Consensus 139 ~~---------------------------------~~~~~~~~~l~~~~~---~~~~~~~~vi~~Sa~~g~gi~~Ll~~l 182 (188)
T PF00009_consen 139 LE---------------------------------EIIEEIKEKLLKEYG---ENGEEIVPVIPISALTGDGIDELLEAL 182 (188)
T ss_dssp HH---------------------------------HHHHHHHHHHHHHTT---STTTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred HH---------------------------------HHHHHHHHHhccccc---cCccccceEEEEecCCCCCHHHHHHHH
Confidence 33 111111112211111 122 35788899999999999999988
Q ss_pred HHHH
Q psy12099 160 RDII 163 (174)
Q Consensus 160 ~~~i 163 (174)
.+.+
T Consensus 183 ~~~~ 186 (188)
T PF00009_consen 183 VELL 186 (188)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 7654
No 180
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.07 E-value=3.4e-10 Score=92.95 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=46.6
Q ss_pred CeeCCCC---------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQ---------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq---------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~ 71 (174)
+|||+|. +.|++.+. ++.++|++|+|+|. +++.+......| ..++......+.|+++|+
T Consensus 241 l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~----------s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~ 308 (351)
T TIGR03156 241 LTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDA----------SDPDREEQIEAV-EKVLEELGAEDIPQLLVY 308 (351)
T ss_pred EEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEEC----------CCCchHHHHHHH-HHHHHHhccCCCCEEEEE
Confidence 6999998 45555543 58899999999999 666655544332 233333233578999999
Q ss_pred eCCchhh
Q psy12099 72 NKQDLLA 78 (174)
Q Consensus 72 NK~Dl~~ 78 (174)
||+|+..
T Consensus 309 NK~Dl~~ 315 (351)
T TIGR03156 309 NKIDLLD 315 (351)
T ss_pred EeecCCC
Confidence 9999854
No 181
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.04 E-value=1.2e-09 Score=78.41 Aligned_cols=100 Identities=18% Similarity=0.266 Sum_probs=64.7
Q ss_pred CeeCCCCchhhh--------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERR--------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~--------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|+..++. .+..++++++++|+|+|. .+...... .. +..++.. .+.|+++++|
T Consensus 49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~-~~-~~~~~~~---~~~piiiv~n 113 (157)
T cd01894 49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDG----------REGLTPAD-EE-IAKYLRK---SKKPVILVVN 113 (157)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEec----------cccCCccH-HH-HHHHHHh---cCCCEEEEEE
Confidence 699999988654 455678899999999998 33222221 12 2222222 2489999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+...... . ..+..+ ..-.+.++||+++.++
T Consensus 114 K~D~~~~~~~------~---------------------------------~~~~~~--------~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 114 KVDNIKEEDE------A---------------------------------AEFYSL--------GFGEPIPISAEHGRGI 146 (157)
T ss_pred CcccCChHHH------H---------------------------------HHHHhc--------CCCCeEEEecccCCCH
Confidence 9998654211 0 000000 0013568999999999
Q ss_pred HHHHHHHHHH
Q psy12099 153 RRVFNDCRDI 162 (174)
Q Consensus 153 ~~~f~~~~~~ 162 (174)
+++|+++.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 182
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.03 E-value=3.4e-10 Score=87.13 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=44.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
+|||+|++.|...+....+.++++|+|+|.++=. .+ ............+... . .....|+++++||+|+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~---~~-~~~~~~~~~~~~~~~~-~--~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGE---FE-AGFEKGGQTREHALLA-R--TLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCc---cc-cccccccchHHHHHHH-H--HcCCCeEEEEEEccccc
Confidence 6999999999888888888999999999994210 00 0001111222222222 2 12346899999999997
No 183
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.03 E-value=1.4e-09 Score=91.80 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=64.9
Q ss_pred CeeCCCCchhhhhH--------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRKW--------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w--------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|++.+...+ ..++++++++|+|+|. ++..+.+.. |+..+.. .+.|+++|+|
T Consensus 255 l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~----------s~~~s~~~~--~l~~~~~----~~~piIlV~N 318 (442)
T TIGR00450 255 LLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDA----------SQPLTKDDF--LIIDLNK----SKKPFILVLN 318 (442)
T ss_pred EeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCChhHH--HHHHHhh----CCCCEEEEEE
Confidence 69999997654332 4688999999999999 555555443 5555432 3679999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEF 125 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f 125 (174)
|+|+... +...+.+.++.+..++||++ .|..+.++...+.+.+.+
T Consensus 319 K~Dl~~~-------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 319 KIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CccCCCc-------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 9998643 11222233333345577776 466666666655555443
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.03 E-value=6.2e-10 Score=98.63 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=71.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.|..+|..+++.++++|+|+|.. +.. ...+.+.+..+. ..++|+++++||+|+....
T Consensus 299 fiDTPGhe~F~~mr~rg~~~aDiaILVVDA~----------dGv-~~QT~E~I~~~k----~~~iPiIVViNKiDl~~~~ 363 (742)
T CHL00189 299 FLDTPGHEAFSSMRSRGANVTDIAILIIAAD----------DGV-KPQTIEAINYIQ----AANVPIIVAINKIDKANAN 363 (742)
T ss_pred EEECCcHHHHHHHHHHHHHHCCEEEEEEECc----------CCC-ChhhHHHHHHHH----hcCceEEEEEECCCccccC
Confidence 6999999999999999999999999999983 311 112223333322 2468999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+.+.+..++ .+.. .....+.+..+||++|.||.++|+.+.
T Consensus 364 ~e----~v~~eL~~~~-----------------------ll~e----------~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 364 TE----RIKQQLAKYN-----------------------LIPE----------KWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred HH----HHHHHHHHhc-----------------------cchH----------hhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 11 1111111111 0000 001235677899999999999998886
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
..
T Consensus 407 ~l 408 (742)
T CHL00189 407 LL 408 (742)
T ss_pred hh
Confidence 54
No 185
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.03 E-value=8e-10 Score=93.56 Aligned_cols=128 Identities=18% Similarity=0.221 Sum_probs=74.2
Q ss_pred CeeCCCCchhhh--------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERR--------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~--------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|++.+.. ....++++++++|+|+|. ++..+..+. .++.. ..+.|+++|+|
T Consensus 267 l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~----------s~~~s~~~~-~~l~~------~~~~piiiV~N 329 (449)
T PRK05291 267 LIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDA----------SEPLTEEDD-EILEE------LKDKPVIVVLN 329 (449)
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecC----------CCCCChhHH-HHHHh------cCCCCcEEEEE
Confidence 699999975432 123478999999999999 555554433 33332 34689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+...... . ........+.||++|.|.++..+...+.+. .... .... ....++......+
T Consensus 330 K~DL~~~~~~------~---~~~~~~~i~iSAktg~GI~~L~~~L~~~l~----~~~~---~~~~--~~~~~~~R~~~~l 391 (449)
T PRK05291 330 KADLTGEIDL------E---EENGKPVIRISAKTGEGIDELREAIKELAF----GGFG---GNQE--GVFLTNARHLEAL 391 (449)
T ss_pred hhhccccchh------h---hccCCceEEEEeeCCCCHHHHHHHHHHHHh----hccc---cccc--cceehHHHHHHHH
Confidence 9999653211 1 112233567888888885555444443332 1110 0001 1233555555666
Q ss_pred HHHHHHHHHHH
Q psy12099 153 RRVFNDCRDII 163 (174)
Q Consensus 153 ~~~f~~~~~~i 163 (174)
+.+.+.+.+.+
T Consensus 392 ~~a~~~l~~~~ 402 (449)
T PRK05291 392 ERALEHLERAL 402 (449)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 186
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.01 E-value=2e-09 Score=91.69 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=43.0
Q ss_pred CeeCCCCc----hhhhh---HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC----------CCC
Q psy12099 1 MFDVGGQR----DERRK---WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR----------WLR 63 (174)
Q Consensus 1 iwD~~Gq~----~~r~~---w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~----------~~~ 63 (174)
||||+|.- ..+.+ ...+++.++++|+|+|+++.. +..+.+.+...+..++.... .+.
T Consensus 210 laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e------~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~ 283 (500)
T PRK12296 210 VADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLE------PGRDPLSDIDALEAELAAYAPALDGDLGLGDLA 283 (500)
T ss_pred EEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccc------cccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence 69999952 22222 233567899999999995321 11233333323332332111 245
Q ss_pred CCcEEEEEeCCchhhH
Q psy12099 64 TISVILFLNKQDLLAE 79 (174)
Q Consensus 64 ~~~iilv~NK~Dl~~~ 79 (174)
+.|++|++||+|+...
T Consensus 284 ~kP~IVVlNKiDL~da 299 (500)
T PRK12296 284 ERPRLVVLNKIDVPDA 299 (500)
T ss_pred CCCEEEEEECccchhh
Confidence 7899999999999754
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.01 E-value=1.4e-09 Score=97.15 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=71.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.|..+|..+++.+|++|+|+|. ++. ....+.+.+... ...++|+++++||+|+....
T Consensus 341 fiDTPGhe~F~~m~~rga~~aDiaILVVdA----------ddG-v~~qT~e~i~~a----~~~~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 341 FLDTPGHEAFTAMRARGAQVTDIVVLVVAA----------DDG-VMPQTIEAINHA----KAAGVPIIVAINKIDKPGAN 405 (787)
T ss_pred EEECCCCccchhHHHhhhhhCCEEEEEEEC----------CCC-CCHhHHHHHHHH----HhcCCcEEEEEECccccccC
Confidence 699999999999999999999999999999 332 122233333322 12468999999999996432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+...+.+++ ++... ....+.++.+||++|.||.++|+++.
T Consensus 406 ~e----~V~~eL~~~~-----------------------~~~e~----------~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 406 PD----RVKQELSEYG-----------------------LVPEE----------WGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred HH----HHHHHHHHhc-----------------------ccHHH----------hCCCceEEEEeCCCCCCchHHHHhhh
Confidence 11 1111111111 00000 01235678899999999999999886
Q ss_pred H
Q psy12099 161 D 161 (174)
Q Consensus 161 ~ 161 (174)
.
T Consensus 449 ~ 449 (787)
T PRK05306 449 L 449 (787)
T ss_pred h
Confidence 4
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.00 E-value=1.6e-09 Score=94.42 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=46.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~~ 79 (174)
+||++|+++|.+.+..++.+++++|+|+|. ++. .+..+.+.+.. +.. .++| +++++||+|+..+
T Consensus 54 ~iDtPGhe~f~~~~~~g~~~aD~aILVVDa----------~~G-~~~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 54 FIDVPGHEKFISNAIAGGGGIDAALLVVDA----------DEG-VMTQTGEHLAV-LDL---LGIPHTIVVITKADRVNE 118 (581)
T ss_pred EEECCCHHHHHHHHHhhhccCCEEEEEEEC----------CCC-CcHHHHHHHHH-HHH---cCCCeEEEEEECCCCCCH
Confidence 699999999999999999999999999999 331 11222222222 221 2466 9999999999653
No 189
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.00 E-value=1.2e-09 Score=95.27 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred CeeCCCCchhhhh------Hhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRK------WIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~------w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|+.++... +..|+. +++++|+|+|. ++.+ ....+..++.+ .+.|+++++|
T Consensus 45 lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDa----------t~le---r~l~l~~ql~~----~~~PiIIVlN 107 (591)
T TIGR00437 45 IVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDA----------SNLE---RNLYLTLQLLE----LGIPMILALN 107 (591)
T ss_pred EEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecC----------Ccch---hhHHHHHHHHh----cCCCEEEEEe
Confidence 6999999988654 556654 78999999999 4432 23444444433 3689999999
Q ss_pred CCchhhH
Q psy12099 73 KQDLLAE 79 (174)
Q Consensus 73 K~Dl~~~ 79 (174)
|+|+.++
T Consensus 108 K~Dl~~~ 114 (591)
T TIGR00437 108 LVDEAEK 114 (591)
T ss_pred hhHHHHh
Confidence 9998654
No 190
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.00 E-value=2.8e-09 Score=89.43 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=45.1
Q ss_pred CeeCCCCch----hhhh---HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRD----ERRK---WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~----~r~~---w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N 72 (174)
+|||+|... .+.+ |..+.+.++++|+|+|+++.+ ..+.+++...|.+++... +.+.+.|++|++|
T Consensus 210 laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 210 MADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred EEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 699999732 2223 334456799999999995321 224555555555554332 2345789999999
Q ss_pred CCchh
Q psy12099 73 KQDLL 77 (174)
Q Consensus 73 K~Dl~ 77 (174)
|+|+.
T Consensus 283 K~DL~ 287 (424)
T PRK12297 283 KMDLP 287 (424)
T ss_pred CCCCc
Confidence 99984
No 191
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.00 E-value=2.4e-09 Score=93.26 Aligned_cols=135 Identities=10% Similarity=-0.029 Sum_probs=74.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.|+.+|..+++.++++|+|+|.++= -...++ ..+..+ .. .++|+++++||+|+....
T Consensus 75 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-------~~~qt~----e~i~~~-~~---~~vpiIvviNK~D~~~~~ 139 (586)
T PRK04004 75 FIDTPGHEAFTNLRKRGGALADIAILVVDINEG-------FQPQTI----EAINIL-KR---RKTPFVVAANKIDRIPGW 139 (586)
T ss_pred EEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-------CCHhHH----HHHHHH-HH---cCCCEEEEEECcCCchhh
Confidence 599999999999999999999999999999310 012222 222222 11 368999999999985321
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcC------CCCCcceeeeecccccchhHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTAS------GDGKHYCYPHFTCAVDTENIRR 154 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~------~~~~~~~~~~~tsA~d~~~i~~ 154 (174)
. ++++.....++++.+....+.+++...-+...+....-.. ..-...+.+..+||++++|+.+
T Consensus 140 ~-----------~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~d 208 (586)
T PRK04004 140 K-----------STEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPD 208 (586)
T ss_pred h-----------hhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHH
Confidence 1 1111111112222111112222222222221111110000 0112346788999999999999
Q ss_pred HHHHHHH
Q psy12099 155 VFNDCRD 161 (174)
Q Consensus 155 ~f~~~~~ 161 (174)
+++.+..
T Consensus 209 Ll~~i~~ 215 (586)
T PRK04004 209 LLMVLAG 215 (586)
T ss_pred HHHHHHH
Confidence 9888754
No 192
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.98 E-value=1.2e-09 Score=91.86 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=43.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL--RESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~--~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
||||+||+.|......++++++++|+|+|.+ +.+.. .....++ .++.. ....|+++++||+|+..
T Consensus 89 iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~----------~~~~~~~~~t~~~~-~~~~~--~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 89 IVDCPGHRDFIKNMITGASQADAAVLVVAVG----------DGEFEVQPQTREHA-FLART--LGINQLIVAINKMDSVN 155 (426)
T ss_pred EEECCCHHHHHHHHHhhhhhCCEEEEEEECC----------CCCcccCCchHHHH-HHHHH--cCCCeEEEEEEChhccC
Confidence 6999999998776666778999999999994 33211 1111111 12221 22358999999999963
No 193
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.97 E-value=6.6e-09 Score=75.50 Aligned_cols=108 Identities=17% Similarity=0.268 Sum_probs=65.5
Q ss_pred CeeCCCCchhh----------h-hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRDER----------R-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r----------~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|+.... . ....++++++++|+|+|. .+..+.. ...++..+.. .+.|+++
T Consensus 54 iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~----------~~~~~~~-~~~~~~~~~~----~~~~~ii 118 (174)
T cd01895 54 LIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDA----------TEGITEQ-DLRIAGLILE----EGKALVI 118 (174)
T ss_pred EEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeC----------CCCcchh-HHHHHHHHHh----cCCCEEE
Confidence 69999975431 1 123467899999999999 4443322 2233333322 3579999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
++||+|+...... ..+...+.+.+.+. ......++.+||+++
T Consensus 119 v~nK~Dl~~~~~~------------------------------~~~~~~~~~~~~~~--------~~~~~~~~~~Sa~~~ 160 (174)
T cd01895 119 VVNKWDLVEKDSK------------------------------TMKEFKKEIRRKLP--------FLDYAPIVFISALTG 160 (174)
T ss_pred EEeccccCCccHH------------------------------HHHHHHHHHHhhcc--------cccCCceEEEeccCC
Confidence 9999998654200 01112222222111 011246778999999
Q ss_pred hhHHHHHHHHHH
Q psy12099 150 ENIRRVFNDCRD 161 (174)
Q Consensus 150 ~~i~~~f~~~~~ 161 (174)
.|+.++++.+..
T Consensus 161 ~~i~~~~~~l~~ 172 (174)
T cd01895 161 QGVDKLFDAIDE 172 (174)
T ss_pred CCHHHHHHHHHH
Confidence 999999998865
No 194
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.95 E-value=3.5e-09 Score=88.66 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=69.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.|.+.|......++++|+|+|.+ +........+.+..+ .. ....|+++++||+|+....
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~----------~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAAN----------EPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECC----------CCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHH
Confidence 6999999999999998889999999999993 211112222222222 11 1234789999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .. .+++..+++... ....+.+..+||+++.|+.++++.+.
T Consensus 151 ~~--~~--------------------------~~~~i~~~l~~~----------~~~~~~ii~vSA~~g~gi~~L~e~L~ 192 (406)
T TIGR03680 151 KA--LE--------------------------NYEEIKEFVKGT----------VAENAPIIPVSALHNANIDALLEAIE 192 (406)
T ss_pred HH--HH--------------------------HHHHHHhhhhhc----------ccCCCeEEEEECCCCCChHHHHHHHH
Confidence 11 00 011122221110 01235567889999999998888887
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
..+
T Consensus 193 ~~l 195 (406)
T TIGR03680 193 KFI 195 (406)
T ss_pred HhC
Confidence 654
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.95 E-value=5.2e-09 Score=91.29 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=52.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+..|...+..+++.++++|+|+|. .+ ..+.....++..+.. .++|+++|+||+|+..+
T Consensus 68 lIDTPGh~DF~~ev~~~l~~aD~alLVVDa----------~~-G~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 68 IVDTPGHADFGGEVERVLGMVDGVLLLVDA----------SE-GPMPQTRFVLKKALE----LGLKPIVVINKIDRPSA 131 (594)
T ss_pred EEECCCHHHHHHHHHHHHHhCCEEEEEEeC----------CC-CCcHHHHHHHHHHHH----CCCCEEEEEECCCCCCc
Confidence 699999999999999999999999999999 33 234555667776654 35799999999998654
No 196
>PRK11058 GTPase HflX; Provisional
Probab=98.95 E-value=4.8e-09 Score=88.25 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=44.4
Q ss_pred CeeCCCCchh--hhhHh------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDE--RRKWI------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~--r~~w~------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|..+. ..+|. .++++++++|+|+|. +++....... .+..++......+.|+++++|
T Consensus 249 l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDa----------S~~~~~e~l~-~v~~iL~el~~~~~pvIiV~N 317 (426)
T PRK11058 249 LADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDA----------ADVRVQENIE-AVNTVLEEIDAHEIPTLLVMN 317 (426)
T ss_pred EEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeC----------CCccHHHHHH-HHHHHHHHhccCCCCEEEEEE
Confidence 6999998442 23333 346899999999999 5665544432 222233322234689999999
Q ss_pred CCchhh
Q psy12099 73 KQDLLA 78 (174)
Q Consensus 73 K~Dl~~ 78 (174)
|+|+..
T Consensus 318 KiDL~~ 323 (426)
T PRK11058 318 KIDMLD 323 (426)
T ss_pred cccCCC
Confidence 999854
No 197
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.93 E-value=5.4e-09 Score=74.93 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=65.0
Q ss_pred CeeCCCCchhhh--------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERR--------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~--------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|...+.. ....++..++++++|+|+ ++..+......+.. ..+.|+++++|
T Consensus 53 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~----------~~~~~~~~~~~~~~-------~~~~~vi~v~n 115 (157)
T cd04164 53 LIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDA----------SRGLDEEDLEILEL-------PADKPIIVVLN 115 (157)
T ss_pred EEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCCHHHHHHHHh-------hcCCCEEEEEE
Confidence 699999755421 122467799999999999 55554444332222 34689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+..... . . .......+.++||+++.|+
T Consensus 116 K~D~~~~~~-----~------~---------------------------------------~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 116 KSDLLPDSE-----L------L---------------------------------------SLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred chhcCCccc-----c------c---------------------------------------cccCCCceEEEECCCCCCH
Confidence 999865320 0 0 0112245678999999999
Q ss_pred HHHHHHHHHHH
Q psy12099 153 RRVFNDCRDII 163 (174)
Q Consensus 153 ~~~f~~~~~~i 163 (174)
.++++++.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=98.92 E-value=7.6e-09 Score=90.34 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=49.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+..|...|..+++.++++|+|+|. .+. -......++..+.. .+.|++++.||+|+....
T Consensus 72 liDTPG~~df~~~v~~~l~~aDg~ILVVDa----------~~G-~~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 72 IVDTPGHADFGGEVERVMSMVDSVLLVVDA----------FDG-PMPQTRFVTKKAFA----YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred EEECCCcchhHHHHHHHHHhCCEEEEEEec----------ccC-ccHHHHHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence 699999999999999999999999999999 332 12233444554433 367889999999987543
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.91 E-value=6.6e-09 Score=87.50 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=43.6
Q ss_pred CeeCCCCch--------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-H-HHHHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQRD--------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-R-ESLDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq~~--------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~-~~~~~~~~i~~~~~~~~~~iilv 70 (174)
+|||+|++. ++..+..++++++++|||+|. .+.-+. + +...|+.. .+.|++++
T Consensus 53 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~----------~~~~~~~~~~~~~~l~~-------~~~piilv 115 (435)
T PRK00093 53 LIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDG----------RAGLTPADEEIAKILRK-------SNKPVILV 115 (435)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCCCHHHHHHHHHHHH-------cCCcEEEE
Confidence 699999987 455677789999999999999 332222 1 22233322 26899999
Q ss_pred EeCCchhh
Q psy12099 71 LNKQDLLA 78 (174)
Q Consensus 71 ~NK~Dl~~ 78 (174)
+||+|+..
T Consensus 116 ~NK~D~~~ 123 (435)
T PRK00093 116 VNKVDGPD 123 (435)
T ss_pred EECccCcc
Confidence 99999643
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.90 E-value=7.8e-09 Score=73.45 Aligned_cols=107 Identities=20% Similarity=0.129 Sum_probs=69.1
Q ss_pred CeeCCCCchhhh-------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099 1 MFDVGGQRDERR-------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~-------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK 73 (174)
+||++|+..... .+..+++.++++++|+|. .+........ ++.... ..+.|+++++||
T Consensus 49 ~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~----------~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK 113 (163)
T cd00880 49 LIDTPGIDEAGGLGREREELARRVLERADLILFVVDA----------DLRADEEEEK-LLELLR----ERGKPVLLVLNK 113 (163)
T ss_pred EEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeC----------CCCCCHHHHH-HHHHHH----hcCCeEEEEEEc
Confidence 699999877653 445588999999999999 4444433332 233322 347899999999
Q ss_pred CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099 74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR 153 (174)
Q Consensus 74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~ 153 (174)
+|+...... ... .. .... .. .......++.+||+++.++.
T Consensus 114 ~D~~~~~~~------~~~--------------------------~~--~~~~---~~---~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 114 IDLLPEEEE------EEL--------------------------LE--LRLL---IL---LLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred cccCChhhH------HHH--------------------------HH--HHHh---hc---ccccCCceEEEeeeccCCHH
Confidence 998654211 000 00 0000 00 12234677889999999999
Q ss_pred HHHHHHHHH
Q psy12099 154 RVFNDCRDI 162 (174)
Q Consensus 154 ~~f~~~~~~ 162 (174)
+++.++.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999988764
No 201
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.89 E-value=1.2e-08 Score=85.90 Aligned_cols=109 Identities=15% Similarity=0.235 Sum_probs=66.9
Q ss_pred CeeCCCCchhhhh-----------HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRDERRK-----------WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r~~-----------w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|.++.... ...+++.++++|+|+|. ++..+..+ ..++..+.. .+.|+++
T Consensus 225 lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~----------~~~~~~~~-~~i~~~~~~----~~~~~iv 289 (435)
T PRK00093 225 LIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDA----------TEGITEQD-LRIAGLALE----AGRALVI 289 (435)
T ss_pred EEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeC----------CCCCCHHH-HHHHHHHHH----cCCcEEE
Confidence 5999997543322 13467899999999999 44433332 234444332 3579999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
++||+|+..+... ++..+.+...+.. ...+.++++||+++
T Consensus 290 v~NK~Dl~~~~~~--------------------------------~~~~~~~~~~l~~--------~~~~~i~~~SA~~~ 329 (435)
T PRK00093 290 VVNKWDLVDEKTM--------------------------------EEFKKELRRRLPF--------LDYAPIVFISALTG 329 (435)
T ss_pred EEECccCCCHHHH--------------------------------HHHHHHHHHhccc--------ccCCCEEEEeCCCC
Confidence 9999999743211 1111112222111 12256778999999
Q ss_pred hhHHHHHHHHHHHHH
Q psy12099 150 ENIRRVFNDCRDIIQ 164 (174)
Q Consensus 150 ~~i~~~f~~~~~~i~ 164 (174)
.||.++|+.+.+...
T Consensus 330 ~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 330 QGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988776543
No 202
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.88 E-value=1.4e-08 Score=90.60 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=43.7
Q ss_pred CeeCCCCch----------hhhh-HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRD----------ERRK-WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~----------~r~~-w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|+.+ +..+ ...+++.++++|+|+|. ++..+..+. .++..+.. .+.|++|
T Consensus 502 liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDa----------t~~~s~~~~-~i~~~~~~----~~~piIi 566 (712)
T PRK09518 502 FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDA----------SQPISEQDL-KVMSMAVD----AGRALVL 566 (712)
T ss_pred EEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEEC----------CCCCCHHHH-HHHHHHHH----cCCCEEE
Confidence 699999642 2222 23457899999999999 555554443 34555433 3689999
Q ss_pred EEeCCchhh
Q psy12099 70 FLNKQDLLA 78 (174)
Q Consensus 70 v~NK~Dl~~ 78 (174)
|+||+|+..
T Consensus 567 V~NK~DL~~ 575 (712)
T PRK09518 567 VFNKWDLMD 575 (712)
T ss_pred EEEchhcCC
Confidence 999999964
No 203
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.86 E-value=2.3e-08 Score=77.98 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=49.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|+..|...|..+++.++++|+|+|.+ +.-. .....+++.+.. .+.|+++++||+|+..
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~----------~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAV----------EGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCC----------CCCC-HHHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 6999999999999999999999999999993 3222 234455554432 3689999999999974
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.85 E-value=7.3e-09 Score=92.32 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=43.4
Q ss_pred CeeCCCCch--------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQRD--------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~~--------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~~~~~~~iilv~ 71 (174)
+|||+|++. +...+..+++.++++|||+|.+ +. ...+ ..+.+.+ .. .+.|+++|+
T Consensus 327 liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~----------~~~~~~d--~~i~~~L-r~---~~~pvIlV~ 390 (712)
T PRK09518 327 LVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQ----------VGLTSTD--ERIVRML-RR---AGKPVVLAV 390 (712)
T ss_pred EEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECC----------CCCCHHH--HHHHHHH-Hh---cCCCEEEEE
Confidence 699999873 4566677899999999999993 21 1111 1233332 22 478999999
Q ss_pred eCCchhh
Q psy12099 72 NKQDLLA 78 (174)
Q Consensus 72 NK~Dl~~ 78 (174)
||+|+..
T Consensus 391 NK~D~~~ 397 (712)
T PRK09518 391 NKIDDQA 397 (712)
T ss_pred ECccccc
Confidence 9999853
No 205
>PRK00089 era GTPase Era; Reviewed
Probab=98.82 E-value=2.9e-08 Score=79.42 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=58.7
Q ss_pred CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|....+ ..+..++.++|++++|+|.+ + .+.....++...+.. .+.|+++++|
T Consensus 57 ~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~----------~--~~~~~~~~i~~~l~~---~~~pvilVlN 121 (292)
T PRK00089 57 FVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDAD----------E--KIGPGDEFILEKLKK---VKTPVILVLN 121 (292)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCC----------C--CCChhHHHHHHHHhh---cCCCEEEEEE
Confidence 58999975432 23445678999999999994 3 111222333333332 3589999999
Q ss_pred CCchhhH-HHhccccchhhhhhccC-CCCCCCCCCCCCCCChHHHHHH
Q psy12099 73 KQDLLAE-KVKAGKSRLEDYFQEFT-RYQTPLDATPDPGEDPIVIRAK 118 (174)
Q Consensus 73 K~Dl~~~-~~~~~~~~l~~~~~~~~-~~~~~~~a~~~~g~~~~~~~a~ 118 (174)
|+|+... ... ...++.+...++ ....+.||++|.|.++..+...
T Consensus 122 KiDl~~~~~~l--~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~ 167 (292)
T PRK00089 122 KIDLVKDKEEL--LPLLEELSELMDFAEIVPISALKGDNVDELLDVIA 167 (292)
T ss_pred CCcCCCCHHHH--HHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999732 111 122333332222 2356788888888554444333
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.81 E-value=2.2e-08 Score=83.99 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=63.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.|..-...-...++++|+|+|. ++..........+..+ .. ....|+++++||+|+..+.
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa----------~~~~~~~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAA----------NEPCPQPQTKEHLMAL-DI--IGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCCChhHHHHHHHH-HH--cCCCcEEEEEEeeccccch
Confidence 699999998875433334456999999999 3321111112222222 11 1224789999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . +..++...++.. .....+.++.+||+++.|+.++++.+.
T Consensus 156 ~~------~----------------------~~~~~i~~~l~~----------~~~~~~~ii~vSA~~g~gI~~L~~~L~ 197 (411)
T PRK04000 156 RA------L----------------------ENYEQIKEFVKG----------TVAENAPIIPVSALHKVNIDALIEAIE 197 (411)
T ss_pred hH------H----------------------HHHHHHHHHhcc----------ccCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 11 0 001111122110 001234567899999999999998887
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 198 ~~l 200 (411)
T PRK04000 198 EEI 200 (411)
T ss_pred HhC
Confidence 654
No 207
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.81 E-value=5.4e-08 Score=72.85 Aligned_cols=107 Identities=9% Similarity=0.077 Sum_probs=63.4
Q ss_pred CeeCCCC----------chhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGGQ----------RDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~Gq----------~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i 67 (174)
||||+|. ++++.+...|++.+ +++++|+|. +......+ .++...+.. .+.|+
T Consensus 74 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~--~~i~~~l~~---~~~~~ 138 (196)
T PRK00454 74 LVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDS----------RHPLKELD--LQMIEWLKE---YGIPV 138 (196)
T ss_pred EeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEec----------CCCCCHHH--HHHHHHHHH---cCCcE
Confidence 6999994 55666667777755 578888887 33222111 112222221 36799
Q ss_pred EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099 68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV 147 (174)
Q Consensus 68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~ 147 (174)
++++||+|+...... +.....+...+.. ....+..+||+
T Consensus 139 iiv~nK~Dl~~~~~~--------------------------------~~~~~~i~~~l~~---------~~~~~~~~Sa~ 177 (196)
T PRK00454 139 LIVLTKADKLKKGER--------------------------------KKQLKKVRKALKF---------GDDEVILFSSL 177 (196)
T ss_pred EEEEECcccCCHHHH--------------------------------HHHHHHHHHHHHh---------cCCceEEEEcC
Confidence 999999998653211 0001111111110 12455689999
Q ss_pred cchhHHHHHHHHHHHH
Q psy12099 148 DTENIRRVFNDCRDII 163 (174)
Q Consensus 148 d~~~i~~~f~~~~~~i 163 (174)
++.|++++|+.+.+.+
T Consensus 178 ~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 178 KKQGIDELRAAIAKWL 193 (196)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887654
No 208
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.80 E-value=1.2e-08 Score=73.31 Aligned_cols=105 Identities=20% Similarity=0.286 Sum_probs=64.2
Q ss_pred CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|..... ..+..++..++++++|+|.+ +. +.....++...+.. .+.|+++++|
T Consensus 55 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~----------~~--~~~~~~~~~~~~~~---~~~~~iiv~n 119 (168)
T cd04163 55 FVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDAS----------EP--IGEGDEFILELLKK---SKTPVILVLN 119 (168)
T ss_pred EEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECC----------Cc--cCchHHHHHHHHHH---hCCCEEEEEE
Confidence 59999975433 34456788999999999994 33 11112222222222 1579999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+...... +. +....+.. ......+..+|++++.++
T Consensus 120 K~Dl~~~~~~-----~~--------------------------~~~~~~~~-----------~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 120 KIDLVKDKED-----LL--------------------------PLLEKLKE-----------LGPFAEIFPISALKGENV 157 (168)
T ss_pred chhccccHHH-----HH--------------------------HHHHHHHh-----------ccCCCceEEEEeccCCCh
Confidence 9998632111 11 11111111 011245678999999999
Q ss_pred HHHHHHHHHH
Q psy12099 153 RRVFNDCRDI 162 (174)
Q Consensus 153 ~~~f~~~~~~ 162 (174)
+++|+.+.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 209
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.80 E-value=3e-08 Score=82.54 Aligned_cols=111 Identities=13% Similarity=0.176 Sum_probs=64.3
Q ss_pred CeeCCCCchh-------hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDE-------RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~-------r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N 72 (174)
++||+|.-.- ......+++.++++++|+|++..+ ..+.+.+...|.+.+... +.+.+.|++|++|
T Consensus 211 ~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~-------~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 211 VADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPID-------GSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred EEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccc-------ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 5899997431 112234578999999999994321 334555555565655432 2345789999999
Q ss_pred CCchhhHHHhccccchhhhhhccC--CCCCCCCCCCCCCCChHHHHHHHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFT--RYQTPLDATPDPGEDPIVIRAKYF 120 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~~~~~~~a~~~ 120 (174)
|+|+..+... ...+..+...++ ....+.||+++.|.++..+...++
T Consensus 284 KiDl~~~~el--~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~ 331 (390)
T PRK12298 284 KIDLLDEEEA--EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTF 331 (390)
T ss_pred CCccCChHHH--HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 9999653211 122223322222 134667777777755444444433
No 210
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.79 E-value=2.3e-08 Score=84.19 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=41.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|++.|.+......+.++++|+|+|.+ +...+ ......+.. +.. ....|+++++||+|+..
T Consensus 88 liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~----------~~~~~~~~~~~~~~~-~~~--~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 88 IVDCPGHRDFVKNMITGASQADAAVLVVAAD----------DAGGVMPQTREHVFL-ART--LGINQLIVAINKMDAVN 153 (425)
T ss_pred EEECCCcccchhhHhhchhcCCEEEEEEEcc----------cCCCCCcchHHHHHH-HHH--cCCCeEEEEEEcccccc
Confidence 6999999887655455568999999999994 21111 112222222 221 12347999999999964
No 211
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.78 E-value=4.6e-08 Score=75.93 Aligned_cols=118 Identities=22% Similarity=0.339 Sum_probs=71.3
Q ss_pred CeeCCCCchhhh-----hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC--CCCCCCcEEEEEeC
Q psy12099 1 MFDVGGQRDERR-----KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN--RWLRTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~-----~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~--~~~~~~~iilv~NK 73 (174)
|||.|||..+-. .....|+++.++|||+|+ .+.+ +.+.+..+...+.. ...+++.+.++..|
T Consensus 52 iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~----------qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK 120 (232)
T PF04670_consen 52 IWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDA----------QSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHK 120 (232)
T ss_dssp EEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEET----------T-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-
T ss_pred EEEcCCccccccccccccHHHHHhccCEEEEEEEc----------cccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEee
Confidence 699999976543 357789999999999999 4332 45555555554433 12468899999999
Q ss_pred CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099 74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR 153 (174)
Q Consensus 74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~ 153 (174)
+|+..+... . +.+....+-+.+.-.+... ..+.+|.||--| ..+-
T Consensus 121 ~D~l~~~~r--~--------------------------~~~~~~~~~i~~~~~~~~~------~~~~~~~TSI~D-~Sly 165 (232)
T PF04670_consen 121 MDLLSEDER--E--------------------------EIFRDIQQRIRDELEDLGI------EDITFFLTSIWD-ESLY 165 (232)
T ss_dssp CCCS-HHHH--H--------------------------HHHHHHHHHHHHHHHHTT-------TSEEEEEE-TTS-THHH
T ss_pred cccCCHHHH--H--------------------------HHHHHHHHHHHHHhhhccc------cceEEEeccCcC-cHHH
Confidence 999755432 1 0122222223322222211 258899999999 5788
Q ss_pred HHHHHHHHHHH
Q psy12099 154 RVFNDCRDIIQ 164 (174)
Q Consensus 154 ~~f~~~~~~i~ 164 (174)
++|..|...++
T Consensus 166 ~A~S~Ivq~Li 176 (232)
T PF04670_consen 166 EAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHc
Confidence 88887776654
No 212
>KOG0090|consensus
Probab=98.78 E-value=8.8e-09 Score=77.96 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=83.6
Q ss_pred CeeCCCCchhhhhHhhhhc---CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQCFN---DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~D 75 (174)
+.|.+|+.+.|.+-..||. .+.++|||+|.+.| .....+..+.+-.++... .-..+|++|+.||+|
T Consensus 86 LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f---------~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 86 LVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF---------LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred EEeCCCcHHHHHHHHHHccccccceeEEEEEecccc---------chhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 4699999999999999998 79999999999855 334456666666665543 245689999999999
Q ss_pred hhhHHHhcc-ccchhhhhhc----cC---CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099 76 LLAEKVKAG-KSRLEDYFQE----FT---RYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV 147 (174)
Q Consensus 76 l~~~~~~~~-~~~l~~~~~~----~~---~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~ 147 (174)
++.++-..- ...+++-... -. .......| ....+..+...| +|..+. ...+.+-++|++
T Consensus 157 l~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~----~~~tlg~~g~dF---~fs~l~------~~~V~F~e~S~~ 223 (238)
T KOG0090|consen 157 LFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA----KDFTLGKEGEDF---KFSHLE------DQKVTFAEASAK 223 (238)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc----cccccccccccc---chhhcc------cceeEEeecccC
Confidence 986542100 0111111000 00 00000000 011111222333 343332 245788899999
Q ss_pred cchhHHHHHHHHHHH
Q psy12099 148 DTENIRRVFNDCRDI 162 (174)
Q Consensus 148 d~~~i~~~f~~~~~~ 162 (174)
++ +|.+.-+|+++.
T Consensus 224 ~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 224 TG-EIDQWESWIREA 237 (238)
T ss_pred cC-ChHHHHHHHHHh
Confidence 99 899988888764
No 213
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.77 E-value=3.8e-08 Score=75.08 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=43.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|++.|...+...++.++++|+|+|.+ +.- .......+.. +.. ....++++++||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~----------~~~-~~~~~~~~~~-~~~--~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDAR----------KGV-LEQTRRHSYI-LSL--LGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECC----------CCc-cHhHHHHHHH-HHH--cCCCcEEEEEEchhccc
Confidence 6999999998877888899999999999993 221 1112222222 221 12246788999999863
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.76 E-value=3.1e-08 Score=86.80 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=43.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
+|||+|+++|.+.....+.++|++|+|+|. .+ .-.....+.+.- +.. .++| +++++||+|+..
T Consensus 55 ~IDtPGhe~fi~~m~~g~~~~D~~lLVVda----------~e-g~~~qT~ehl~i-l~~---lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 55 FIDVPGHEKFLSNMLAGVGGIDHALLVVAC----------DD-GVMAQTREHLAI-LQL---TGNPMLTVALTKADRVD 118 (614)
T ss_pred EEECCCHHHHHHHHHHHhhcCCEEEEEEEC----------CC-CCcHHHHHHHHH-HHH---cCCCeEEEEEECCccCC
Confidence 699999999977667778999999999998 32 112223333322 221 1344 679999999964
No 215
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.73 E-value=3.2e-08 Score=83.13 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=44.5
Q ss_pred CeeCCCC--------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQ--------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq--------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
||||+|. +.++..+..++++++++|||+|. .+.-...+ ..+..+++. .+.|+++++|
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~----------~~~~~~~d--~~i~~~l~~---~~~piilVvN 115 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDG----------REGLTPED--EEIAKWLRK---SGKPVILVAN 115 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCCCHHH--HHHHHHHHH---hCCCEEEEEE
Confidence 6999996 66677788899999999999999 33222111 112222222 3679999999
Q ss_pred CCchhhH
Q psy12099 73 KQDLLAE 79 (174)
Q Consensus 73 K~Dl~~~ 79 (174)
|+|+...
T Consensus 116 K~D~~~~ 122 (429)
T TIGR03594 116 KIDGKKE 122 (429)
T ss_pred CccCCcc
Confidence 9998653
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.72 E-value=1.3e-07 Score=72.29 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=47.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
+|||+|++.|...+..+++.++++|+|+|.+ +..+. ....++..... .+.|+++++||+|+.
T Consensus 75 iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~----------~~~~~-~~~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 75 IIDTPGHVNFMDEVAAALRLSDGVVLVVDVV----------EGVTS-NTERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred EEECCCCcchHHHHHHHHHhCCEEEEEEECC----------CCCCH-HHHHHHHHHHH----cCCCEEEEEECcccC
Confidence 6999999999999999999999999999993 33332 22334444322 348999999999985
No 217
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.69 E-value=4.2e-08 Score=72.90 Aligned_cols=95 Identities=11% Similarity=0.202 Sum_probs=58.7
Q ss_pred CeeCCCCc----------hhhhhHhhhhcC---CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGGQR----------DERRKWIQCFND---VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~Gq~----------~~r~~w~~y~~~---~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i 67 (174)
+|||+|.. .+..+-..|++. ++++|+|+|. ++.-+..+. ..+.. +.. .+.|+
T Consensus 68 liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~----------~~~~~~~~~-~~~~~-~~~---~~~pv 132 (179)
T TIGR03598 68 LVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDI----------RHPLKELDL-EMLEW-LRE---RGIPV 132 (179)
T ss_pred EEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecC----------CCCCCHHHH-HHHHH-HHH---cCCCE
Confidence 69999953 233333466664 5799999998 332222221 22332 222 36899
Q ss_pred EEEEeCCchhhHH-HhccccchhhhhhccC--CCCCCCCCCCCCCC
Q psy12099 68 ILFLNKQDLLAEK-VKAGKSRLEDYFQEFT--RYQTPLDATPDPGE 110 (174)
Q Consensus 68 ilv~NK~Dl~~~~-~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~ 110 (174)
++++||+|+..+. .......++++++... ....++||++|+|.
T Consensus 133 iiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 133 LIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 9999999997432 1111245666777653 25789999999985
No 218
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.68 E-value=1.1e-07 Score=87.08 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=45.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+||+.|..+....+..++++|+|+|. ++.- ...+.+.+..+.. .++|+++++||+|+..
T Consensus 530 fiDTPGhe~F~~lr~~g~~~aDivlLVVDa----------~~Gi-~~qT~e~I~~lk~----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDI----------NEGF-KPQTIEAINILRQ----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEECCCcHHHHHHHHhhcccCCEEEEEEEC----------cccC-CHhHHHHHHHHHH----cCCCEEEEEECCCCcc
Confidence 699999999999888888999999999999 3310 0112222222222 2579999999999853
No 219
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.68 E-value=1.3e-08 Score=75.96 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=51.2
Q ss_pred CeeCCCCchhhhhHhh---hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQ---CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~---y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~D 75 (174)
|.|+.|+++.|..-.. |..++.+||||+|.+ +....+.++.+.+-.++.... ...+|++|+.||+|
T Consensus 53 lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs---------~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~D 123 (181)
T PF09439_consen 53 LVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSS---------TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQD 123 (181)
T ss_dssp EEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETT---------THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TT
T ss_pred EEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCc---------cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcc
Confidence 4699999999985444 478999999999995 345567777777777766543 34689999999999
Q ss_pred hhhHH
Q psy12099 76 LLAEK 80 (174)
Q Consensus 76 l~~~~ 80 (174)
++.++
T Consensus 124 l~~A~ 128 (181)
T PF09439_consen 124 LFTAK 128 (181)
T ss_dssp STT--
T ss_pred ccccC
Confidence 98754
No 220
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.68 E-value=1.1e-07 Score=73.50 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=48.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|++.|......+++.++++|+|+|+ .+.... .....+..... .++|++|++||+|+..
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~----------~~g~~~-~t~~~l~~~~~----~~~p~ilviNKiD~~~ 139 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDA----------VEGVCV-QTETVLRQALK----ERVKPVLVINKIDRLI 139 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEEC----------CCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCcch
Confidence 599999999999999999999999999999 443322 23344444432 3579999999999863
No 221
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.64 E-value=3.6e-07 Score=72.62 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=47.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|+..+...|..+++.++++|+|+|.+ +.-. ......+..+.. .+.|++++.||+|+.+
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~----------~g~~-~~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAV----------AGVE-PQTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECC----------CCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 5899999999999999999999999999994 2211 122344444332 3579999999999975
No 222
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.63 E-value=6.8e-08 Score=72.53 Aligned_cols=52 Identities=19% Similarity=0.099 Sum_probs=36.3
Q ss_pred hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
++..+..|+++++++|+|+|+++.+ .+.. ..+.. ...+.|+++|+||+|+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~---------~~~~------~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFP---------GSLI------PRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCC---------Cccc------hhHHH--hcCCCcEEEEEEchhcCC
Confidence 5889999999999999999995422 1111 11111 124679999999999864
No 223
>PRK13768 GTPase; Provisional
Probab=98.60 E-value=5.1e-08 Score=76.75 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=70.5
Q ss_pred CeeCCCCch---hhhhHhhhhcC-----CCEEEEEEeCCCccccccCCCCcchHHHH--HHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQRD---ERRKWIQCFND-----VTAIIFVTACSSYNMVLREDPTQNRLRES--LDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq~~---~r~~w~~y~~~-----~~~ii~v~d~s~~~~~~~e~~~~~~~~~~--~~~~~~i~~~~~~~~~~iilv 70 (174)
|||++|+.. ++..|..+++. ++++++++|. ....+..+. ..++...... ..+.|++++
T Consensus 101 ~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~----------~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v 168 (253)
T PRK13768 101 LVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDA----------VLAKTPSDFVSLLLLALSVQL--RLGLPQIPV 168 (253)
T ss_pred EEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEech----------HHhCCHHHHHHHHHHHHHHHH--HcCCCEEEE
Confidence 699999966 46777666554 8899999999 333222221 1222211111 136899999
Q ss_pred EeCCchhhHHHhccccchhhhhhc-------cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeee
Q psy12099 71 LNKQDLLAEKVKAGKSRLEDYFQE-------FTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHF 143 (174)
Q Consensus 71 ~NK~Dl~~~~~~~~~~~l~~~~~~-------~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~ 143 (174)
+||+|+..+... ..+.+++.+ ..... |.. .....-+...+.+.. ....++.
T Consensus 169 ~nK~D~~~~~~~---~~~~~~l~~~~~~~~~l~~~~---------~~~---~~~~~~~~~~i~~~~-------~~~~vi~ 226 (253)
T PRK13768 169 LNKADLLSEEEL---ERILKWLEDPEYLLEELKLEK---------GLQ---GLLSLELLRALEETG-------LPVRVIP 226 (253)
T ss_pred EEhHhhcCchhH---HHHHHHHhCHHHHHHHHhccc---------chH---HHHHHHHHHHHHHHC-------CCCcEEE
Confidence 999998754211 112222221 11000 000 111111222222211 1235678
Q ss_pred cccccchhHHHHHHHHHHHH
Q psy12099 144 TCAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 144 tsA~d~~~i~~~f~~~~~~i 163 (174)
+||+++++++++.+++.+.+
T Consensus 227 iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 227 VSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EECCCCcCHHHHHHHHHHHc
Confidence 99999999999999987654
No 224
>PRK13351 elongation factor G; Reviewed
Probab=98.60 E-value=6.8e-07 Score=79.54 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=50.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+..|...|..+++.++++|+|+|. ++..... ....|..+.. .++|+++++||+|+....
T Consensus 77 liDtPG~~df~~~~~~~l~~aD~~ilVvd~----------~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 77 LIDTPGHIDFTGEVERSLRVLDGAVVVFDA----------VTGVQPQ-TETVWRQADR----YGIPRLIFINKMDRVGAD 141 (687)
T ss_pred EEECCCcHHHHHHHHHHHHhCCEEEEEEeC----------CCCCCHH-HHHHHHHHHh----cCCCEEEEEECCCCCCCC
Confidence 699999999999999999999999999999 4443333 2344444332 268999999999998643
No 225
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.59 E-value=2e-07 Score=80.47 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=47.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|+..|......+++.++++|+|+|.+ +.- ......+++... ..++|+++++||+|+..
T Consensus 83 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~----------~gv-~~~t~~l~~~~~----~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 83 LLDTPGHEDFSEDTYRTLTAVDSALMVIDAA----------KGV-EPQTRKLMEVCR----LRDTPIFTFINKLDRDG 145 (526)
T ss_pred EEECCCchhhHHHHHHHHHHCCEEEEEEecC----------CCC-CHHHHHHHHHHH----hcCCCEEEEEECCcccc
Confidence 6999999999988888999999999999994 321 112334444332 24789999999999875
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.59 E-value=3.9e-07 Score=70.51 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=69.7
Q ss_pred CeeCCCCchhhhhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+.||+|+++|.+-...... .++++++|+|. .... ......++..+.. .+.|++++.||+|+..
T Consensus 88 liDtpG~~~~~~~~~~~~~~~~~D~~llVvda----------~~g~-~~~d~~~l~~l~~----~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 88 FIDLAGHERYLKTTLFGLTGYAPDYAMLVVAA----------NAGI-IGMTKEHLGLALA----LNIPVFVVVTKIDLAP 152 (224)
T ss_pred EEECCCcHHHHHHHHHhhcccCCCEEEEEEEC----------CCCC-cHHHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 4699999998665444443 68999999998 2221 2333344444332 2578999999999864
Q ss_pred HH-HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 79 EK-VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 79 ~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
+. +......+.+++...+....|...++. ++....|.+. .....+.++.+||.+|+|++.+..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~---~~~~~~~~~~-------------~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSD---DDVVLAASNF-------------SSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecc---cceeehhhcC-------------CccccCcEEEeeCCCccCHHHHHH
Confidence 32 221112333333221111111111110 0001111111 223446788999999999999887
Q ss_pred HHH
Q psy12099 158 DCR 160 (174)
Q Consensus 158 ~~~ 160 (174)
.+.
T Consensus 217 ~L~ 219 (224)
T cd04165 217 FLN 219 (224)
T ss_pred HHH
Confidence 663
No 227
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.54 E-value=4.1e-07 Score=70.72 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=24.5
Q ss_pred CeeCCCCchhh-------hhHhhhhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQRDER-------RKWIQCFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq~~~r-------~~w~~y~~~~~~ii~v~d~s~ 32 (174)
+||++|+.+.. ..+..++++++++++|+|.++
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 59999985432 234568999999999999953
No 228
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.53 E-value=8.5e-07 Score=78.96 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=48.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+..+...+..+++.++++|+|+|. .+.... ....++..+.. .+.|+++++||+|+...
T Consensus 79 liDTPG~~~~~~~~~~~l~~~D~~ilVvda----------~~g~~~-~~~~~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 79 IIDTPGHVDFTVEVERSLRVLDGAVAVLDA----------VGGVQP-QSETVWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred EEECCCCcchhHHHHHHHHHhCEEEEEEeC----------CCCCCh-hHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 599999999998999999999999999999 332222 22344444322 35799999999999753
No 229
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.51 E-value=3.7e-07 Score=75.38 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=38.4
Q ss_pred CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 7 QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 7 q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
++.|+.+...|+++++.+++|+|+.++. .+ |...+.+. ..+.|+++|+||+|+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~---------~s------~~~~l~~~--~~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE---------GS------LIPELKRF--VGGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC---------CC------ccHHHHHH--hCCCCEEEEEEchhhCC
Confidence 4678888888999999999999995432 11 11222111 12579999999999964
No 230
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.48 E-value=1.8e-06 Score=62.18 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=62.6
Q ss_pred CeeCCC----------CchhhhhHhhhhcC---CCEEEEEEeCCCccccccCCCCcc-hH-HHHHHHHHHHHcCCCCCCC
Q psy12099 1 MFDVGG----------QRDERRKWIQCFND---VTAIIFVTACSSYNMVLREDPTQN-RL-RESLDLFKSIWNNRWLRTI 65 (174)
Q Consensus 1 iwD~~G----------q~~~r~~w~~y~~~---~~~ii~v~d~s~~~~~~~e~~~~~-~~-~~~~~~~~~i~~~~~~~~~ 65 (174)
+|||+| ++.++..+..|+.. ++++++++|. .... .. .....|+.. .+.
T Consensus 49 ~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~l~~-------~~~ 111 (170)
T cd01876 49 LVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDS----------RHGPTEIDLEMLDWLEE-------LGI 111 (170)
T ss_pred EecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEc----------CcCCCHhHHHHHHHHHH-------cCC
Confidence 589998 34566667777764 5688899988 3221 11 222333332 147
Q ss_pred cEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecc
Q psy12099 66 SVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTC 145 (174)
Q Consensus 66 ~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~ts 145 (174)
|+++++||+|+...... . . ........+.. ......++.+|
T Consensus 112 ~vi~v~nK~D~~~~~~~--~-~-------------------------~~~~~~~~l~~-----------~~~~~~~~~~S 152 (170)
T cd01876 112 PFLVVLTKADKLKKSEL--A-K-------------------------ALKEIKKELKL-----------FEIDPPIILFS 152 (170)
T ss_pred CEEEEEEchhcCChHHH--H-H-------------------------HHHHHHHHHHh-----------ccCCCceEEEe
Confidence 99999999998533211 0 0 00111111110 01224566899
Q ss_pred cccchhHHHHHHHHHHH
Q psy12099 146 AVDTENIRRVFNDCRDI 162 (174)
Q Consensus 146 A~d~~~i~~~f~~~~~~ 162 (174)
|+++.++.++++.+.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.46 E-value=4.1e-07 Score=72.15 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=47.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+..|...+..+++.++++|+|+|.+ +.-. .....+++.. . ..++|+++++||+|+...
T Consensus 75 liDTPG~~df~~~~~~~l~~aD~~IlVvda~----------~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 75 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA----------KGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREGR 138 (267)
T ss_pred EEECCCchHHHHHHHHHHHHCCEEEEEEECC----------CCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCCC
Confidence 6999999999987788899999999999994 3211 1223344332 2 236899999999998643
No 232
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.46 E-value=3.1e-06 Score=64.08 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=42.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~ 77 (174)
+.||+|+..|..-...-...++++|+|+|.. ..- .......+..+.. .+.| ++++.||+|+.
T Consensus 69 ~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~----------~g~-~~~~~~~~~~~~~----~~~~~iIvviNK~D~~ 131 (195)
T cd01884 69 HVDCPGHADYIKNMITGAAQMDGAILVVSAT----------DGP-MPQTREHLLLARQ----VGVPYIVVFLNKADMV 131 (195)
T ss_pred EEECcCHHHHHHHHHHHhhhCCEEEEEEECC----------CCC-cHHHHHHHHHHHH----cCCCcEEEEEeCCCCC
Confidence 4699999888776666778999999999993 221 1223334444332 2355 78999999986
No 233
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.45 E-value=1.1e-06 Score=75.86 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=45.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|+..|......+++.++++|+|+|.+ +. -......+++ ++.. .++|+++++||+|+..
T Consensus 84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~----------~g-v~~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAA----------KG-VETRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEECCChhhHHHHHHHHHHhCCEEEEEEECC----------CC-CCHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 6999999999886667899999999999994 21 1112233443 3332 4689999999999863
No 234
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.44 E-value=5.6e-07 Score=65.34 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=35.7
Q ss_pred hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|.++.|..++++.+|+|+|.+ +.....+ ..+. ..+.. .+.|+++++||+|+..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~----------~~~~~~~-~~l~-~~~~~---~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDAR----------DPELTRS-RKLE-RYVLE---LGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCC----------CCcccCC-HHHH-HHHHh---CCCcEEEEEEhHHhCC
Confidence 4678899999999999999993 2211111 1111 11221 2579999999999854
No 235
>PRK12736 elongation factor Tu; Reviewed
Probab=98.43 E-value=3e-06 Score=70.80 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=42.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
++||+|++.|.+....-...+|++|+|+|. ... -.....+.+..+.. .++| ++++.||+|+..
T Consensus 79 ~iDtPGh~~f~~~~~~~~~~~d~~llVvd~----------~~g-~~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 79 HVDCPGHADYVKNMITGAAQMDGAILVVAA----------TDG-PMPQTREHILLARQ----VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCC-CchhHHHHHHHHHH----cCCCEEEEEEEecCCcc
Confidence 589999998876555556788999999999 321 12233344443322 2466 778999999863
No 236
>KOG1144|consensus
Probab=98.36 E-value=3.5e-06 Score=74.01 Aligned_cols=140 Identities=16% Similarity=0.061 Sum_probs=87.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.||.|+++|-.+....-.-|+.+|+|+|+- --.| +.+ .+++. .+ ..+++||||.+||.|.+...
T Consensus 544 vIdtpghEsFtnlRsrgsslC~~aIlvvdIm----hGle---pqt-iESi~---lL----R~rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 544 VIDTPGHESFTNLRSRGSSLCDLAILVVDIM----HGLE---PQT-IESIN---LL----RMRKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred EecCCCchhhhhhhhccccccceEEEEeehh----ccCC---cch-hHHHH---HH----HhcCCCeEEeehhhhhhccc
Confidence 4699999999999888888999999999991 1111 111 12222 22 23689999999999987543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcC------CCCCcceeeeecccccchhHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTAS------GDGKHYCYPHFTCAVDTENIRR 154 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~------~~~~~~~~~~~tsA~d~~~i~~ 154 (174)
-..-..++...+..... .....|..-.+-|...|..+.-+. -...+.+.+..|||.+|++|-.
T Consensus 609 k~~p~~~i~~~lkkQ~k-----------~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipd 677 (1064)
T KOG1144|consen 609 KSCPNAPIVEALKKQKK-----------DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPD 677 (1064)
T ss_pred ccCCCchHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHH
Confidence 22113455554444432 112334444445555665552210 0233446677899999999999
Q ss_pred HHHHHHHHHHHh
Q psy12099 155 VFNDCRDIIQRM 166 (174)
Q Consensus 155 ~f~~~~~~i~~~ 166 (174)
++..|...-+..
T Consensus 678 Ll~llv~ltQk~ 689 (1064)
T KOG1144|consen 678 LLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHH
Confidence 998888765544
No 237
>PRK00098 GTPase RsgA; Reviewed
Probab=98.35 E-value=8.1e-07 Score=71.55 Aligned_cols=46 Identities=30% Similarity=0.366 Sum_probs=31.8
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
.++|.+++|+|+ +++.......+.|...+.. .++|++|++||+|+.
T Consensus 79 aniD~vllV~d~----------~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 79 ANVDQAVLVFAA----------KEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLL 124 (298)
T ss_pred ecCCEEEEEEEC----------CCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcC
Confidence 799999999999 5554433333333222332 468999999999995
No 238
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.34 E-value=7e-06 Score=68.58 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=40.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV-ILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i-ilv~NK~Dl~~ 78 (174)
+|||+|++.|..-...-...++++|+|+|. ... -.....+.+..+... ++|. ++++||+|+..
T Consensus 79 liDtpGh~~f~~~~~~~~~~~D~~ilVvda----------~~g-~~~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------TDG-PMPQTREHILLARQV----GVPYIVVFLNKCDMVD 142 (394)
T ss_pred EEECCchHHHHHHHHHHHhhCCEEEEEEEC----------CCC-CcHHHHHHHHHHHHc----CCCEEEEEEEecccCC
Confidence 699999998875444444567999999999 331 112233444443221 4564 56899999864
No 239
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.34 E-value=1.5e-06 Score=78.01 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=65.0
Q ss_pred CeeCCCCchhhh----------hHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099 1 MFDVGGQRDERR----------KWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI 68 (174)
Q Consensus 1 iwD~~Gq~~~r~----------~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii 68 (174)
+|||+|+.++.. .+..|+ +.+|++|+|+|. ++.++ .+.++.++.+ .+.|++
T Consensus 54 lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDa----------t~ler---~l~l~~ql~e----~giPvI 116 (772)
T PRK09554 54 LVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDA----------SNLER---NLYLTLQLLE----LGIPCI 116 (772)
T ss_pred EEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecC----------Ccchh---hHHHHHHHHH----cCCCEE
Confidence 699999987643 234454 489999999999 44433 3445555543 268999
Q ss_pred EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHH
Q psy12099 69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAK 118 (174)
Q Consensus 69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~ 118 (174)
+++||+|+.+++-. ...++++-...+.+..+.||.+|+|.++..+.+.
T Consensus 117 vVlNK~Dl~~~~~i--~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 117 VALNMLDIAEKQNI--RIDIDALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred EEEEchhhhhccCc--HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 99999998754321 2234444445566678899999998554443333
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.33 E-value=1.7e-06 Score=73.38 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=44.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-------HHHHHHHHHHHcCCCCCCC-cEEEEEe
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-------RESLDLFKSIWNNRWLRTI-SVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-------~~~~~~~~~i~~~~~~~~~-~iilv~N 72 (174)
+.|++||+.|.+.....++.++++|+|+|.. + ..+ ....+.+..+ .. .++ +++++.|
T Consensus 89 liDtPGh~df~~~~~~g~~~aD~aIlVVda~----------~-G~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vN 153 (447)
T PLN00043 89 VIDAPGHRDFIKNMITGTSQADCAVLIIDST----------T-GGFEAGISKDGQTREHALLA-FT---LGVKQMICCCN 153 (447)
T ss_pred EEECCCHHHHHHHHHhhhhhccEEEEEEEcc----------c-CceecccCCCchHHHHHHHH-HH---cCCCcEEEEEE
Confidence 4799999999998899999999999999993 2 111 1223333322 11 244 6888999
Q ss_pred CCchh
Q psy12099 73 KQDLL 77 (174)
Q Consensus 73 K~Dl~ 77 (174)
|+|+.
T Consensus 154 KmD~~ 158 (447)
T PLN00043 154 KMDAT 158 (447)
T ss_pred cccCC
Confidence 99986
No 241
>PRK12740 elongation factor G; Reviewed
Probab=98.32 E-value=3.6e-06 Score=74.71 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=48.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+..+...|..+++.+|++|+|+|.+ ..... .....+..+.. .+.|+++++||+|+...
T Consensus 64 liDtPG~~~~~~~~~~~l~~aD~vllvvd~~----------~~~~~-~~~~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 64 LIDTPGHVDFTGEVERALRVLDGAVVVVCAV----------GGVEP-QTETVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred EEECCCcHHHHHHHHHHHHHhCeEEEEEeCC----------CCcCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 5999999999899999999999999999994 33222 23344444332 36799999999998744
No 242
>KOG0462|consensus
Probab=98.28 E-value=1.9e-06 Score=73.32 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=70.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.||.|+--|+.--..-+.-|+|+|+|+|. ..-- ....+.-|....+ .+..+|.|+||.|++.+.
T Consensus 129 LIDTPGHvDFs~EVsRslaac~G~lLvVDA----------~qGv-qAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 129 LIDTPGHVDFSGEVSRSLAACDGALLVVDA----------SQGV-QAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred eecCCCcccccceehehhhhcCceEEEEEc----------CcCc-hHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC
Confidence 469999999988778888899999999999 3332 2333333333333 367899999999999876
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.......+ +.-|. . .. -....+|||.|.|+.+++++|.
T Consensus 194 pe~V~~q~---~~lF~------------------------------~------~~---~~~i~vSAK~G~~v~~lL~AII 231 (650)
T KOG0462|consen 194 PERVENQL---FELFD------------------------------I------PP---AEVIYVSAKTGLNVEELLEAII 231 (650)
T ss_pred HHHHHHHH---HHHhc------------------------------C------Cc---cceEEEEeccCccHHHHHHHHH
Confidence 44111122 22221 1 01 1344689999999999998888
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.|
T Consensus 232 ~rV 234 (650)
T KOG0462|consen 232 RRV 234 (650)
T ss_pred hhC
Confidence 765
No 243
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.27 E-value=7.5e-06 Score=59.87 Aligned_cols=63 Identities=27% Similarity=0.329 Sum_probs=43.1
Q ss_pred CeeCCCC------chhhhhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQ------RDERRKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq------~~~r~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+.|++|- ....+.+..|. +..|++|.|+|. ++ ++..+.+..++... +.|+++++|
T Consensus 51 lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa----------~~---l~r~l~l~~ql~e~----g~P~vvvlN 113 (156)
T PF02421_consen 51 LVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDA----------TN---LERNLYLTLQLLEL----GIPVVVVLN 113 (156)
T ss_dssp EEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEG----------GG---HHHHHHHHHHHHHT----TSSEEEEEE
T ss_pred EEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCC----------CC---HHHHHHHHHHHHHc----CCCEEEEEe
Confidence 3577773 23445666675 689999999999 44 56666666666643 589999999
Q ss_pred CCchhhHH
Q psy12099 73 KQDLLAEK 80 (174)
Q Consensus 73 K~Dl~~~~ 80 (174)
|+|...++
T Consensus 114 ~~D~a~~~ 121 (156)
T PF02421_consen 114 KMDEAERK 121 (156)
T ss_dssp THHHHHHT
T ss_pred CHHHHHHc
Confidence 99987654
No 244
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=6.1e-06 Score=70.10 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=73.0
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV 81 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~ 81 (174)
.||+|++-|-.+...=..=+|.+|+|++. +.--+-...+-++.. .-.++||++..||+|.++...
T Consensus 60 iDTPGHeAFt~mRaRGa~vtDIaILVVa~-----------dDGv~pQTiEAI~ha----k~a~vP~iVAiNKiDk~~~np 124 (509)
T COG0532 60 IDTPGHEAFTAMRARGASVTDIAILVVAA-----------DDGVMPQTIEAINHA----KAAGVPIVVAINKIDKPEANP 124 (509)
T ss_pred EcCCcHHHHHHHHhcCCccccEEEEEEEc-----------cCCcchhHHHHHHHH----HHCCCCEEEEEecccCCCCCH
Confidence 69999999999988666678999999999 222223333323222 235899999999999985431
Q ss_pred hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHH
Q psy12099 82 KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRD 161 (174)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~ 161 (174)
..+..-..+++- ... ...+.+-+..+||+.|+|+.+++..+.-
T Consensus 125 ----~~v~~el~~~gl-----------------------~~E----------~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 125 ----DKVKQELQEYGL-----------------------VPE----------EWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred ----HHHHHHHHHcCC-----------------------CHh----------hcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 122222222221 001 1123466778899999999999888775
Q ss_pred HHHHhhh
Q psy12099 162 IIQRMHL 168 (174)
Q Consensus 162 ~i~~~~~ 168 (174)
.-....+
T Consensus 168 ~aev~el 174 (509)
T COG0532 168 LAEVLEL 174 (509)
T ss_pred HHHHHhh
Confidence 5443333
No 245
>PRK12289 GTPase RsgA; Reviewed
Probab=98.24 E-value=3.3e-06 Score=69.52 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=34.6
Q ss_pred hHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 13 KWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 13 ~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+....+.++|.+++|+|+ .++. .......++..+ . ..++|++||+||+||..
T Consensus 82 L~R~~~aNvD~vLlV~d~----------~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 82 LDRPPVANADQILLVFAL----------AEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVS 134 (352)
T ss_pred eechhhhcCCEEEEEEEC----------CCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCC
Confidence 344568899999999999 4433 222223333333 1 24689999999999964
No 246
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.18 E-value=1.9e-05 Score=67.15 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=41.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+.|++|++.|-+-...-...+|++++|+|. ...-......+.+.. +.. ..-.+++++.||+|+..
T Consensus 121 ~IDtPGH~~fi~~m~~g~~~~D~alLVVda----------~~g~~~~qT~ehl~i-~~~--lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 121 FVDCPGHDILMATMLNGAAVMDAALLLIAA----------NESCPQPQTSEHLAA-VEI--MKLKHIIILQNKIDLVK 185 (460)
T ss_pred eeeCCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCCccchhhHHHHHH-HHH--cCCCcEEEEEecccccC
Confidence 479999998866555556789999999999 321111122222222 221 12247899999999874
No 247
>PRK12735 elongation factor Tu; Reviewed
Probab=98.17 E-value=2.4e-05 Score=65.45 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=40.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI-LFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii-lv~NK~Dl~~ 78 (174)
++||+|++.|.+-...-...+|++++|+|. .+.. .....+.+..+.. .++|.+ ++.||+|+..
T Consensus 79 ~iDtPGh~~f~~~~~~~~~~aD~~llVvda----------~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------ADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEECCCHHHHHHHHHhhhccCCEEEEEEEC----------CCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcc
Confidence 589999988865544556788999999999 3211 1222334433321 246754 6799999963
No 248
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.10 E-value=4.7e-06 Score=65.96 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=48.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+..+...+..+++.++++|+|+|.+ ..... .....|+.+. ..+.|+++++||+|+...
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~----------~g~~~-~~~~~~~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQ----------SGVEV-GTEKLWEFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCC----------CCCCH-HHHHHHHHHH----HcCCCEEEEEECCccCCC
Confidence 6999999999899999999999999999993 33222 2233344332 236799999999998754
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.06 E-value=1.4e-05 Score=67.01 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=41.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
++||+|++.|-+-...-...+|++|+|+|.. ..- .....+.+..+ .. ....+++++.||+|+..
T Consensus 84 liDtPGh~~f~~~~~~~~~~aD~allVVda~----------~G~-~~qt~~~~~~~-~~--~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 84 VADTPGHEQYTRNMATGASTADLAVLLVDAR----------KGV-LEQTRRHSYIA-SL--LGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEeCCCHHHHHHHHHHHHhhCCEEEEEEECC----------CCC-ccccHHHHHHH-HH--cCCCcEEEEEEeccccc
Confidence 5899999998665555678999999999983 111 11111222221 11 12346899999999864
No 250
>PRK12739 elongation factor G; Reviewed
Probab=98.06 E-value=4e-05 Score=68.46 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=47.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
++||+|+..|..-|...++.+|++|+|+|.+ ..-. ......+..+.. .+.|++++.||+|+..+
T Consensus 77 liDTPG~~~f~~e~~~al~~~D~~ilVvDa~----------~g~~-~qt~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 77 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAV----------SGVE-PQSETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred EEcCCCHHHHHHHHHHHHHHhCeEEEEEeCC----------CCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 5899999999999999999999999999983 3211 222344444432 35799999999999853
No 251
>KOG1707|consensus
Probab=98.03 E-value=1.4e-05 Score=68.53 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=76.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~ 78 (174)
|.|++-.+..+-.-.+=.+.|+++..|+++ ++..+++.....|--+++... .-++||||||||+|+..
T Consensus 60 ivD~ss~~~~~~~l~~EirkA~vi~lvyav----------d~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 60 IVDTSSDSDDRLCLRKEIRKADVICLVYAV----------DDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred EEecccccchhHHHHHHHhhcCEEEEEEec----------CChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 346654444344446678899999999999 888999998777777776644 24789999999999865
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
.... .++ .-..=|-..|.++.+ ..+|||+.-.|+.++|..
T Consensus 130 ~~~~----s~e--------------------------~~~~pim~~f~EiEt----------ciecSA~~~~n~~e~fYy 169 (625)
T KOG1707|consen 130 NENN----SDE--------------------------VNTLPIMIAFAEIET----------CIECSALTLANVSELFYY 169 (625)
T ss_pred cccc----chh--------------------------HHHHHHHHHhHHHHH----------HHhhhhhhhhhhHhhhhh
Confidence 3211 010 001113334444433 347899999999999988
Q ss_pred HHHHHH
Q psy12099 159 CRDIIQ 164 (174)
Q Consensus 159 ~~~~i~ 164 (174)
..+.++
T Consensus 170 aqKaVi 175 (625)
T KOG1707|consen 170 AQKAVI 175 (625)
T ss_pred hhheee
Confidence 777665
No 252
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.02 E-value=2e-05 Score=67.43 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=39.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
++||+|++.|.+-...-...+|++|+|+|.. ..- .....+.+.. +.. ....|++++.||+|+..
T Consensus 111 ~iDTPGh~~f~~~~~~~l~~aD~allVVDa~----------~G~-~~qt~~~~~l-~~~--lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 111 IADTPGHEQYTRNMATGASTCDLAILLIDAR----------KGV-LDQTRRHSFI-ATL--LGIKHLVVAVNKMDLVD 174 (474)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECC----------CCc-cccchHHHHH-HHH--hCCCceEEEEEeecccc
Confidence 5899999998654444468999999999983 210 0001111111 111 11247899999999863
No 253
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.02 E-value=3.1e-05 Score=60.44 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=64.4
Q ss_pred CeeCCCCchhhhhHhhhh--------cCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQRDERRKWIQCF--------NDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~--------~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~ 71 (174)
|+||+||-++-..|..-- ...-++++++|.+-. ++...+-.+ +.-+..+++ -+.|.+.++
T Consensus 95 l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~-------~~~~~f~s~~L~s~s~~~~----~~lP~vnvl 163 (238)
T PF03029_consen 95 LFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC-------SDPSKFVSSLLLSLSIMLR----LELPHVNVL 163 (238)
T ss_dssp EEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG--------SSHHHHHHHHHHHHHHHHH----HTSEEEEEE
T ss_pred EEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccc-------cChhhHHHHHHHHHHHHhh----CCCCEEEee
Confidence 589999988877776554 567789999998422 233333332 222333333 268999999
Q ss_pred eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHH-HHHHHHHhhhcCCCCCcce-eeeecccccc
Q psy12099 72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF-IRDEFLRISTASGDGKHYC-YPHFTCAVDT 149 (174)
Q Consensus 72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~-i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~ 149 (174)
||+|+..+..+ ..-+|+.+.. ........ .......+... ......+ .+...|++++
T Consensus 164 sK~Dl~~~~~~----~~l~~~~d~~----------------~l~~~~~~~~~~l~~~i~~~-l~~~~~~~~f~pls~~~~ 222 (238)
T PF03029_consen 164 SKIDLLSKYLE----FILEWFEDPD----------------SLEDLLESDYKKLNEEIAEL-LDDFGLVIRFIPLSSKDG 222 (238)
T ss_dssp --GGGS-HHHH----HHHHHHHSHH----------------HHHHHHHT-HHHHHHHHHHH-CCCCSSS---EE-BTTTT
T ss_pred eccCcccchhH----HHHHHhcChH----------------HHHHHHHHHHHHHHHHHHHH-HhhcCCCceEEEEECCCh
Confidence 99999875422 2223333332 12221110 01111111111 1122223 6788999999
Q ss_pred hhHHHHHHHHHHHH
Q psy12099 150 ENIRRVFNDCRDII 163 (174)
Q Consensus 150 ~~i~~~f~~~~~~i 163 (174)
+++.+++..+.+.+
T Consensus 223 ~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 223 EGMEELLAAIDKAN 236 (238)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887654
No 254
>PRK12288 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.9e-05 Score=64.91 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=33.3
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
|+|.+++|+++ .+..++.....|+..+ . ..++|++||+||+||..
T Consensus 120 NvD~vlIV~s~----------~p~~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 120 NIDQIVIVSAV----------LPELSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EccEEEEEEeC----------CCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCC
Confidence 48999999998 6666666665655433 2 24689999999999964
No 255
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.00 E-value=2.4e-05 Score=62.75 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=35.6
Q ss_pred hhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 17 CFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
...++|.+++|+|+ .++. ++.....|+..+.. .++|++||+||+||..+
T Consensus 75 i~anvD~vllV~d~----------~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 75 IAANVDQLVIVVSL----------NEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD 124 (287)
T ss_pred EEEeCCEEEEEEEc----------CCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh
Confidence 36799999999999 5555 55555555554432 36899999999999643
No 256
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.98 E-value=9.1e-05 Score=55.96 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=35.8
Q ss_pred CeeCCCCchhhhhHhhh-----hcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQRDERRKWIQC-----FNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y-----~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
+|||+|.......-..| +.+++.+|++.+- . +.+.. .+++. +... +.|+++|+||+
T Consensus 56 l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-----------~---~~~~d~~~~~~-l~~~---~~~~ilV~nK~ 117 (197)
T cd04104 56 LWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-----------R---FSSNDVKLAKA-IQCM---GKKFYFVRTKV 117 (197)
T ss_pred EEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-----------C---CCHHHHHHHHH-HHHh---CCCEEEEEecc
Confidence 69999985432222223 6788888887433 2 22222 33333 3321 57999999999
Q ss_pred chhh
Q psy12099 75 DLLA 78 (174)
Q Consensus 75 Dl~~ 78 (174)
|+..
T Consensus 118 D~~~ 121 (197)
T cd04104 118 DRDL 121 (197)
T ss_pred cchh
Confidence 9853
No 257
>CHL00071 tufA elongation factor Tu
Probab=97.97 E-value=0.00012 Score=61.58 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=43.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
+.||+|++.|-+-...-...+|++++|+|. ... -.....+.+..+.. .+.| ++++.||+|+..
T Consensus 79 ~iDtPGh~~~~~~~~~~~~~~D~~ilVvda----------~~g-~~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------ADG-PMPQTKEHILLAKQ----VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred EEECCChHHHHHHHHHHHHhCCEEEEEEEC----------CCC-CcHHHHHHHHHHHH----cCCCEEEEEEEccCCCC
Confidence 369999988866666667899999999999 321 12334444444322 2467 778999999874
No 258
>PLN03126 Elongation factor Tu; Provisional
Probab=97.96 E-value=5.8e-05 Score=64.58 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=44.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
++|++|++.|-+-...-...+|++|+|+|. .+. -.....+++..+.. .++| ++++.||+|+..
T Consensus 148 liDtPGh~~f~~~~~~g~~~aD~ailVVda----------~~G-~~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 148 HVDCPGHADYVKNMITGAAQMDGAILVVSG----------ADG-PMPQTKEHILLAKQ----VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCC-CcHHHHHHHHHHHH----cCCCeEEEEEecccccC
Confidence 589999999876655566789999999998 322 22334455544332 2466 788999999864
No 259
>KOG1489|consensus
Probab=97.96 E-value=2.5e-05 Score=62.72 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=59.0
Q ss_pred hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHH-cCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099 16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW-NNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE 94 (174)
Q Consensus 16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~-~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~ 94 (174)
.+.+.++..+||+|+|.+.. .+-++....++.++- -+..+.+.|.+||+||+|+++.. ..-+++.++.
T Consensus 270 rHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~ 338 (366)
T KOG1489|consen 270 RHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSLAKR 338 (366)
T ss_pred HHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHHHHH
Confidence 34568999999999965422 255555555554442 22346778999999999997543 2235666666
Q ss_pred cCCC-CCCCCCCCCCCCChHH
Q psy12099 95 FTRY-QTPLDATPDPGEDPIV 114 (174)
Q Consensus 95 ~~~~-~~~~~a~~~~g~~~~~ 114 (174)
-..+ ..|.||++|+|..+..
T Consensus 339 lq~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 339 LQNPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred cCCCcEEEeeeccccchHHHH
Confidence 6554 7899999998864443
No 260
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.88 E-value=1.7e-05 Score=70.14 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=58.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh--
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA-- 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~-- 78 (174)
++||+|++.|......-...+|++|+|+|.. ... .....+.+..+ .. ....+++|+.||+|+.+
T Consensus 108 liDtPG~~~f~~~~~~~~~~aD~~llVvda~----------~g~-~~~t~e~~~~~-~~--~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 108 VADTPGHEQYTRNMVTGASTADLAIILVDAR----------KGV-LTQTRRHSFIA-SL--LGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred EEECCChHHHHHHHHHHHHhCCEEEEEEECC----------CCc-cccCHHHHHHH-HH--hCCCeEEEEEEecccccch
Confidence 5899999988665555578999999999983 211 11111222211 11 12357899999999963
Q ss_pred -HHHhccccchhhhhhccCC---CCCCCCCCCCCCCCh
Q psy12099 79 -EKVKAGKSRLEDYFQEFTR---YQTPLDATPDPGEDP 112 (174)
Q Consensus 79 -~~~~~~~~~l~~~~~~~~~---~~~~~~a~~~~g~~~ 112 (174)
+.+......+.+++..++. +..|.||++|.|..+
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1111001233333333332 367899999999763
No 261
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.88 E-value=0.00013 Score=61.99 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=42.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc---hH---HHHHHHHHHHHcCCCCCCC-cEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN---RL---RESLDLFKSIWNNRWLRTI-SVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~---~~---~~~~~~~~~i~~~~~~~~~-~iilv~NK 73 (174)
+.||+|++.|-.-...-...+|++|+|+|.+ ... .+ ....+.+..+. . .++ +++++.||
T Consensus 89 lIDtPGh~~f~~~~~~g~~~aD~ailVVda~----------~G~~e~~~~~~~qT~eh~~~~~-~---~gi~~iiv~vNK 154 (446)
T PTZ00141 89 IIDAPGHRDFIKNMITGTSQADVAILVVAST----------AGEFEAGISKDGQTREHALLAF-T---LGVKQMIVCINK 154 (446)
T ss_pred EEECCChHHHHHHHHHhhhhcCEEEEEEEcC----------CCceecccCCCccHHHHHHHHH-H---cCCCeEEEEEEc
Confidence 5799999999887777788999999999993 210 00 12233333321 1 244 47899999
Q ss_pred Cchh
Q psy12099 74 QDLL 77 (174)
Q Consensus 74 ~Dl~ 77 (174)
+|..
T Consensus 155 mD~~ 158 (446)
T PTZ00141 155 MDDK 158 (446)
T ss_pred cccc
Confidence 9953
No 262
>KOG1532|consensus
Probab=97.87 E-value=8.7e-05 Score=58.76 Aligned_cols=135 Identities=14% Similarity=0.227 Sum_probs=73.8
Q ss_pred CeeCCCC-chhh-----hhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQ-RDER-----RKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq-~~~r-----~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
|.||.|| |.|- ++...-+ ....+++||+|... .+++..|-...-+--+++.. .+.|+++++|
T Consensus 120 liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~r-------s~~p~tFMSNMlYAcSilyk---tklp~ivvfN 189 (366)
T KOG1532|consen 120 LIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPR-------STSPTTFMSNMLYACSILYK---TKLPFIVVFN 189 (366)
T ss_pred EEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCc-------CCCchhHHHHHHHHHHHHHh---ccCCeEEEEe
Confidence 4688998 3332 1111111 24578889999832 13455555444444444432 4689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCC--CCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATP--DPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE 150 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~--~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~ 150 (174)
|+|+...... .+|..+|... ..|.. +.+=..+.....+.....|. +.+...-+||.+|.
T Consensus 190 K~Dv~d~~fa------~eWm~DfE~F---qeAl~~~~~~y~s~l~~SmSL~leeFY----------~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 190 KTDVSDSEFA------LEWMTDFEAF---QEALNEAESSYMSNLTRSMSLMLEEFY----------RSLRTVGVSSVTGE 250 (366)
T ss_pred cccccccHHH------HHHHHHHHHH---HHHHHhhccchhHHhhhhHHHHHHHHH----------hhCceEEEecccCC
Confidence 9999765432 3555555410 00000 00001122222333333332 23455678999999
Q ss_pred hHHHHHHHHHHHHH
Q psy12099 151 NIRRVFNDCRDIIQ 164 (174)
Q Consensus 151 ~i~~~f~~~~~~i~ 164 (174)
+..+.|.+|...+-
T Consensus 251 G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 251 GFDDFFTAVDESVD 264 (366)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887654
No 263
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.87 E-value=5.7e-05 Score=54.90 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=30.1
Q ss_pred hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
-++++|.+++|+|.+ ++..- .. ..+...+.. ...+.|+++++||+|+..
T Consensus 5 ~l~~aD~il~VvD~~----------~p~~~-~~-~~i~~~l~~-~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 5 VIDSSDVVIQVLDAR----------DPMGT-RC-KHVEEYLKK-EKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhhhCCEEEEEEECC----------CCccc-cC-HHHHHHHHh-ccCCCCEEEEEEchhcCC
Confidence 357999999999993 32110 01 122222222 123579999999999964
No 264
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.85 E-value=6.3e-05 Score=45.44 Aligned_cols=45 Identities=36% Similarity=0.425 Sum_probs=30.4
Q ss_pred CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD 75 (174)
Q Consensus 21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D 75 (174)
.++|+|++|.|+.+ --++++-..+++++... +.+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~C--------Gysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQC--------GYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TT--------SS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCC--------CCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 57899999997543 33677778888888643 67999999999998
No 265
>PRK09866 hypothetical protein; Provisional
Probab=97.82 E-value=0.00027 Score=62.08 Aligned_cols=112 Identities=9% Similarity=0.061 Sum_probs=63.0
Q ss_pred CeeCCCCchh-----hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDE-----RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~-----r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D 75 (174)
+.||+|-..- ...-...+.++|.|+||+|. +..-+..+ ....+. ++. ..++.|++++.||+|
T Consensus 234 FVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDa----------t~~~s~~D-eeIlk~-Lkk-~~K~~PVILVVNKID 300 (741)
T PRK09866 234 LLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDY----------TQLKSISD-EEVREA-ILA-VGQSVPLYVLVNKFD 300 (741)
T ss_pred EEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeC----------CCCCChhH-HHHHHH-HHh-cCCCCCEEEEEEccc
Confidence 3599998541 22344578899999999998 43222222 122232 222 122369999999999
Q ss_pred hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099 76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV 155 (174)
Q Consensus 76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~ 155 (174)
+.++.- ...+....++...+... ....-.++.+||+.|.|++.+
T Consensus 301 l~dree------------------------------ddkE~Lle~V~~~L~q~------~i~f~eIfPVSAlkG~nid~L 344 (741)
T PRK09866 301 QQDRNS------------------------------DDADQVRALISGTLMKG------CITPQQIFPVSSMWGYLANRA 344 (741)
T ss_pred CCCccc------------------------------chHHHHHHHHHHHHHhc------CCCCceEEEEeCCCCCCHHHH
Confidence 853210 01222333333222110 011234667899999998888
Q ss_pred HHHHHH
Q psy12099 156 FNDCRD 161 (174)
Q Consensus 156 f~~~~~ 161 (174)
.+.|..
T Consensus 345 LdeI~~ 350 (741)
T PRK09866 345 RHELAN 350 (741)
T ss_pred HHHHHh
Confidence 887765
No 266
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.81 E-value=2.9e-05 Score=55.56 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=45.0
Q ss_pred hhcCCCEEEEEEeCCCccccccCCCCcchHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099 17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLR--ESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE 94 (174)
Q Consensus 17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~--~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~ 94 (174)
..+++|.+++|+|. .++.+.. ....++.. . ..+.|+++++||+|+..+... ....+++..
T Consensus 8 ~i~~aD~vl~ViD~----------~~p~~~~~~~l~~~l~~----~-~~~k~~iivlNK~DL~~~~~~---~~~~~~~~~ 69 (141)
T cd01857 8 VVERSDIVVQIVDA----------RNPLLFRPPDLERYVKE----V-DPRKKNILLLNKADLLTEEQR---KAWAEYFKK 69 (141)
T ss_pred HHhhCCEEEEEEEc----------cCCcccCCHHHHHHHHh----c-cCCCcEEEEEechhcCCHHHH---HHHHHHHHh
Confidence 46789999999999 3332211 22222222 1 146899999999999643321 233445544
Q ss_pred cCCCCCCCCCCCCC
Q psy12099 95 FTRYQTPLDATPDP 108 (174)
Q Consensus 95 ~~~~~~~~~a~~~~ 108 (174)
.+....+.||.+|.
T Consensus 70 ~~~~ii~iSa~~~~ 83 (141)
T cd01857 70 EGIVVVFFSALKEN 83 (141)
T ss_pred cCCeEEEEEecCCC
Confidence 44456677888775
No 267
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=0.00021 Score=59.92 Aligned_cols=110 Identities=15% Similarity=0.262 Sum_probs=63.8
Q ss_pred CeeCCCCchhhhhHh-----------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRDERRKWI-----------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~-----------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+.||||-++-.+... .-.+.++.|++|.|. +..-+ +.-+.....+.+ ...+++|
T Consensus 230 liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa----------~~~~~-~qD~~ia~~i~~----~g~~~vI 294 (444)
T COG1160 230 LIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDA----------TEGIS-EQDLRIAGLIEE----AGRGIVI 294 (444)
T ss_pred EEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEEC----------CCCch-HHHHHHHHHHHH----cCCCeEE
Confidence 468999876544332 223478999999999 33322 222233333332 3679999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
+.||.|+.++.-. . .++...-+..+|.-+. ...++++||+.+
T Consensus 295 vvNKWDl~~~~~~----~--------------------------~~~~k~~i~~~l~~l~--------~a~i~~iSA~~~ 336 (444)
T COG1160 295 VVNKWDLVEEDEA----T--------------------------MEEFKKKLRRKLPFLD--------FAPIVFISALTG 336 (444)
T ss_pred EEEccccCCchhh----H--------------------------HHHHHHHHHHHhcccc--------CCeEEEEEecCC
Confidence 9999998764110 0 1111122222222211 235677888888
Q ss_pred hhHHHHHHHHHHHH
Q psy12099 150 ENIRRVFNDCRDII 163 (174)
Q Consensus 150 ~~i~~~f~~~~~~i 163 (174)
.++..+|+.+.+..
T Consensus 337 ~~i~~l~~~i~~~~ 350 (444)
T COG1160 337 QGLDKLFEAIKEIY 350 (444)
T ss_pred CChHHHHHHHHHHH
Confidence 88888888877654
No 268
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.80 E-value=0.00031 Score=57.18 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=26.1
Q ss_pred CeeCCCC----chhhhhHhh---hhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQ----RDERRKWIQ---CFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq----~~~r~~w~~---y~~~~~~ii~v~d~s~ 32 (174)
+|||+|+ ++++.+-.. ++++|+++|+|+|+++
T Consensus 73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 6999998 666665444 4899999999999975
No 269
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.76 E-value=3.7e-05 Score=68.91 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=46.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+..|.......++.+|++|+|+|.. +.- .......+....+ .+.|+++++||+|....
T Consensus 90 liDTPG~~~f~~~~~~al~~aD~~llVvda~----------~g~-~~~t~~~~~~~~~----~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 90 LIDTPGHVDFGGDVTRAMRAVDGAIVVVCAV----------EGV-MPQTETVLRQALK----ENVKPVLFINKVDRLIN 153 (720)
T ss_pred EEeCCCccccHHHHHHHHHhcCEEEEEEecC----------CCC-CccHHHHHHHHHH----cCCCEEEEEEChhcccc
Confidence 5999999999888888999999999999983 211 1122233443322 25688899999998743
No 270
>PRK00049 elongation factor Tu; Reviewed
Probab=97.74 E-value=0.00039 Score=58.22 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=41.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI-LFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii-lv~NK~Dl~~ 78 (174)
+.||+|++.|..-...-...+|++++|+|. ... -.....+.+..+.. .+.|++ ++.||+|+..
T Consensus 79 ~iDtPG~~~f~~~~~~~~~~aD~~llVVDa----------~~g-~~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------ADG-PMPQTREHILLARQ----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEECCCHHHHHHHHHhhhccCCEEEEEEEC----------CCC-CchHHHHHHHHHHH----cCCCEEEEEEeecCCcc
Confidence 369999988765555556899999999998 322 11233344444332 246865 5899999863
No 271
>PRK00007 elongation factor G; Reviewed
Probab=97.74 E-value=0.00028 Score=63.09 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=44.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+.||+|+..|-.-...-.+.++++|+|+|.. ..- .......+..+... +.|++++.||+|+..+
T Consensus 79 liDTPG~~~f~~ev~~al~~~D~~vlVvda~----------~g~-~~qt~~~~~~~~~~----~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 79 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAV----------GGV-EPQSETVWRQADKY----KVPRIAFVNKMDRTGA 142 (693)
T ss_pred EEeCCCcHHHHHHHHHHHHHcCEEEEEEECC----------CCc-chhhHHHHHHHHHc----CCCEEEEEECCCCCCC
Confidence 4699999877665556678999999999983 221 12334445554432 5788999999999754
No 272
>COG1159 Era GTPase [General function prediction only]
Probab=97.67 E-value=0.00024 Score=56.67 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=56.2
Q ss_pred eeCCCCchhhhhH--------hhhhcCCCEEEEEEeCCCccccccCCCC-cchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 2 FDVGGQRDERRKW--------IQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 2 wD~~Gq~~~r~~w--------~~y~~~~~~ii~v~d~s~~~~~~~e~~~-~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
.||.|=.+-+..- ..-+.++|.++||+|. +. ....+ ...++. ++. .+.|++++.|
T Consensus 59 vDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~----------~~~~~~~d--~~il~~-lk~---~~~pvil~iN 122 (298)
T COG1159 59 VDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDA----------DEGWGPGD--EFILEQ-LKK---TKTPVILVVN 122 (298)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEec----------cccCCccH--HHHHHH-Hhh---cCCCeEEEEE
Confidence 5888864333222 2345699999999999 33 22211 122222 222 4689999999
Q ss_pred CCchhhHHHhccccchhhhhh---ccCCCCCCCCCCCCCCCChHHHHHHHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQ---EFTRYQTPLDATPDPGEDPIVIRAKYF 120 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~---~~~~~~~~~~a~~~~g~~~~~~~a~~~ 120 (174)
|.|....+.. -.++..+.. +|. ...|.||++|.|.+...+....+
T Consensus 123 KID~~~~~~~--l~~~~~~~~~~~~f~-~ivpiSA~~g~n~~~L~~~i~~~ 170 (298)
T COG1159 123 KIDKVKPKTV--LLKLIAFLKKLLPFK-EIVPISALKGDNVDTLLEIIKEY 170 (298)
T ss_pred ccccCCcHHH--HHHHHHHHHhhCCcc-eEEEeeccccCCHHHHHHHHHHh
Confidence 9998765431 112222222 122 45778888887765444444433
No 273
>PLN03127 Elongation factor Tu; Provisional
Probab=97.63 E-value=0.00096 Score=56.77 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=40.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
+.||+|++.|-.....-...+|++++|+|. .+.. .....+.+..+.. .++| ++++.||+|+..
T Consensus 128 ~iDtPGh~~f~~~~~~g~~~aD~allVVda----------~~g~-~~qt~e~l~~~~~----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 128 HVDCPGHADYVKNMITGAAQMDGGILVVSA----------PDGP-MPQTKEHILLARQ----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred EEECCCccchHHHHHHHHhhCCEEEEEEEC----------CCCC-chhHHHHHHHHHH----cCCCeEEEEEEeeccCC
Confidence 469999988755444444679999999998 3221 1223333443322 2467 578899999864
No 274
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.00011 Score=62.00 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=45.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.||.|+--|.---..-+..|-|+|+|+|. +.--.-+...+.+..+ .+ +..|+-|+||.||+.+.
T Consensus 80 lIDTPGHVDFsYEVSRSLAACEGalLvVDA----------sQGveAQTlAN~YlAl-e~----~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 80 LIDTPGHVDFSYEVSRSLAACEGALLVVDA----------SQGVEAQTLANVYLAL-EN----NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred EcCCCCccceEEEehhhHhhCCCcEEEEEC----------ccchHHHHHHHHHHHH-Hc----CcEEEEeeecccCCCCC
Confidence 369999977765555566789999999999 4443333333444443 22 56788889999998765
Q ss_pred H
Q psy12099 81 V 81 (174)
Q Consensus 81 ~ 81 (174)
.
T Consensus 145 p 145 (603)
T COG0481 145 P 145 (603)
T ss_pred H
Confidence 3
No 275
>PRK13796 GTPase YqeH; Provisional
Probab=97.55 E-value=0.00048 Score=57.09 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=16.2
Q ss_pred eeeecccccchhHHHHHHHHHH
Q psy12099 140 YPHFTCAVDTENIRRVFNDCRD 161 (174)
Q Consensus 140 ~~~~tsA~d~~~i~~~f~~~~~ 161 (174)
.++.+||+++.|++++++.+.+
T Consensus 135 ~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 135 DVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3567788888888888777754
No 276
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.52 E-value=0.00029 Score=57.30 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=63.8
Q ss_pred hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHc-CCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099 16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWN-NRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE 94 (174)
Q Consensus 16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~-~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~ 94 (174)
.+.+.+..+++|+|++..+. .+-.++...+..++-. ++.+.+.|.+|++||+|+...... ...+.+.+..
T Consensus 233 rHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~ 303 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAE 303 (369)
T ss_pred HHHHhhheeEEEEecCcccC-------CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHH
Confidence 34567899999999964421 2234444444444432 245778899999999995433222 2344455554
Q ss_pred c-CCCCCC-CCCCCCCCCChHHHHHHHHHHHH
Q psy12099 95 F-TRYQTP-LDATPDPGEDPIVIRAKYFIRDE 124 (174)
Q Consensus 95 ~-~~~~~~-~~a~~~~g~~~~~~~a~~~i~~~ 124 (174)
. .+.... .||.+++|.++......+++...
T Consensus 304 ~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 304 ALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred hcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 3 332222 89999999998888888877654
No 277
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.50 E-value=0.0003 Score=59.03 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=66.3
Q ss_pred CeeCCCCchh---------hhhHhhhhcCCCEEEEEEeCCCccccccCCCC-cchHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQRDE---------RRKWIQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq~~~---------r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~-~~~~~~~~~~~~~i~~~~~~~~~~iilv 70 (174)
+.||||-+.. +.....-+..||++|||+|. .. ....+ +.+-+++.. .+.|++|+
T Consensus 55 lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~----------~~Git~~D---~~ia~~Lr~---~~kpviLv 118 (444)
T COG1160 55 LIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDG----------REGITPAD---EEIAKILRR---SKKPVILV 118 (444)
T ss_pred EEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeC----------CCCCCHHH---HHHHHHHHh---cCCCEEEE
Confidence 4688887632 23344556799999999999 22 22222 222333331 36899999
Q ss_pred EeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099 71 LNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI 121 (174)
Q Consensus 71 ~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i 121 (174)
.||+|-... .....++..-.-+.+.+.||.-|.|..+..++..+.+
T Consensus 119 vNK~D~~~~-----e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 119 VNKIDNLKA-----EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred EEcccCchh-----hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 999998743 2344455555556788999999999888877776664
No 278
>COG2262 HflX GTPases [General function prediction only]
Probab=97.50 E-value=0.00052 Score=56.97 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=36.8
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.+|.++.|+|. +++ ...+-.+....++..-...++|+++++||.|+...
T Consensus 271 ~aDlllhVVDa----------Sdp-~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 271 EADLLLHVVDA----------SDP-EILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred cCCEEEEEeec----------CCh-hHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 78999999999 566 34444455566666655667999999999997654
No 279
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.47 E-value=0.00064 Score=49.25 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=26.1
Q ss_pred CEEEEEEeCCCccccccCCCCcchHHHHHHHHH-HHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 22 TAIIFVTACSSYNMVLREDPTQNRLRESLDLFK-SIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 22 ~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~-~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
|.+|+|+|. .++..... .++. ..+. ..+.|+++++||+|+..
T Consensus 1 Dvvl~VvD~----------~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDA----------RDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEec----------cCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCC
Confidence 578999999 33332221 1222 2222 23689999999999954
No 280
>KOG3886|consensus
Probab=97.45 E-value=0.00019 Score=55.46 Aligned_cols=66 Identities=21% Similarity=0.441 Sum_probs=46.0
Q ss_pred CeeCCCCchhh-----hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHH----HHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQRDER-----RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFK----SIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~~~r-----~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~----~i~~~~~~~~~~iilv~ 71 (174)
+||.|||+.+- ..-.+-|+++.++|+|||+ + .+.++.-...++ .++++ .+...+..+.
T Consensus 57 lwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDv----------e-s~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~ 123 (295)
T KOG3886|consen 57 LWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDV----------E-SREMEKDFHYYQKCLEALLQN--SPEAKIFCLL 123 (295)
T ss_pred hhccCCcHHHHHHHHhhcchhhheeheeeeeeeec----------c-chhhhhhHHHHHHHHHHHHhc--CCcceEEEEE
Confidence 59999998553 3456788999999999999 2 333333334443 34444 3466788899
Q ss_pred eCCchhhH
Q psy12099 72 NKQDLLAE 79 (174)
Q Consensus 72 NK~Dl~~~ 79 (174)
.|+|+..+
T Consensus 124 hKmDLv~~ 131 (295)
T KOG3886|consen 124 HKMDLVQE 131 (295)
T ss_pred eechhccc
Confidence 99999743
No 281
>KOG1145|consensus
Probab=97.42 E-value=0.00069 Score=58.25 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=45.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.||.|+.-|..+...=-..+|.+|+|+.. .+ .-+....+- +.+....++|+++..||+|.++..
T Consensus 205 FLDTPGHaAF~aMRaRGA~vtDIvVLVVAa----------dD-GVmpQT~Ea----IkhAk~A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 205 FLDTPGHAAFSAMRARGANVTDIVVLVVAA----------DD-GVMPQTLEA----IKHAKSANVPIVVAINKIDKPGAN 269 (683)
T ss_pred EecCCcHHHHHHHHhccCccccEEEEEEEc----------cC-CccHhHHHH----HHHHHhcCCCEEEEEeccCCCCCC
Confidence 369999999999887544556888999987 22 222223222 233345689999999999988654
Q ss_pred H
Q psy12099 81 V 81 (174)
Q Consensus 81 ~ 81 (174)
.
T Consensus 270 p 270 (683)
T KOG1145|consen 270 P 270 (683)
T ss_pred H
Confidence 3
No 282
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.28 E-value=0.0019 Score=46.48 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=57.6
Q ss_pred eeCCCCchhhhhHh----hhhcCCCEEEEEEeCCCccccccCCCCcch-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 2 FDVGGQRDERRKWI----QCFNDVTAIIFVTACSSYNMVLREDPTQNR-LRESLDLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 2 wD~~Gq~~~r~~w~----~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~-~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
.||.|-=-+.+.+- ..-.+|+.|++|.|. ++..+ +--. |..+ + +.|++=|.||+|+
T Consensus 41 IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da----------t~~~~~~pP~---fa~~-----f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 41 IDTPGEYIENPRFYHALIVTAQDADVVLLLQDA----------TEPRSVFPPG---FASM-----F-NKPVIGVITKIDL 101 (143)
T ss_pred EECChhheeCHHHHHHHHHHHhhCCEEEEEecC----------CCCCccCCch---hhcc-----c-CCCEEEEEECccC
Confidence 47777533332222 223489999999999 33322 1100 1111 1 4699999999999
Q ss_pred hhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099 77 LAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF 156 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f 156 (174)
.... .+.+.|.++++. +.-+. ++++||.++++|+++.
T Consensus 102 ~~~~-------------------------------~~i~~a~~~L~~----------aG~~~--if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 102 PSDD-------------------------------ANIERAKKWLKN----------AGVKE--IFEVSAVTGEGIEELK 138 (143)
T ss_pred ccch-------------------------------hhHHHHHHHHHH----------cCCCC--eEEEECCCCcCHHHHH
Confidence 8211 123344444432 22233 4789999999999998
Q ss_pred HHHH
Q psy12099 157 NDCR 160 (174)
Q Consensus 157 ~~~~ 160 (174)
+.|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 8775
No 283
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.27 E-value=0.001 Score=49.04 Aligned_cols=50 Identities=28% Similarity=0.189 Sum_probs=30.6
Q ss_pred hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 12 RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 12 ~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
..-.....++|.+++|+|.+ ....-. ....... ..+.|+++++||+|+..
T Consensus 11 ~~~~~~i~~aD~il~v~D~~----------~~~~~~-~~~i~~~------~~~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDAR----------IPLSSR-NPLLEKI------LGNKPRIIVLNKADLAD 60 (171)
T ss_pred HHHHHHHhhCCEEEEEeecc----------CccCcC-ChhhHhH------hcCCCEEEEEehhhcCC
Confidence 33345678999999999994 221100 0111111 12468999999999864
No 284
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.24 E-value=0.00054 Score=54.64 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=42.6
Q ss_pred chhhhhHhhhhcC--CCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH-Hhc
Q psy12099 8 RDERRKWIQCFND--VTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRWLRTISVILFLNKQDLLAEK-VKA 83 (174)
Q Consensus 8 ~~~r~~w~~y~~~--~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~-~~~ 83 (174)
+..+..+..++.+ +++++|+++. +. ..+.. -++.++.+.. .+|+++|+||+|+..+. +..
T Consensus 100 ~e~~~~r~~~~~d~rvh~~ly~i~~----------~~-~~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~~~e~~~ 163 (276)
T cd01850 100 EESRIKRNPRIPDTRVHACLYFIEP----------TG-HGLKPLDIEFMKRLSK-----RVNIIPVIAKADTLTPEELKE 163 (276)
T ss_pred HHhhhcccccCCCCceEEEEEEEeC----------CC-CCCCHHHHHHHHHHhc-----cCCEEEEEECCCcCCHHHHHH
Confidence 3333344355554 6778888876 22 12222 2455555432 58999999999996421 111
Q ss_pred cccchhhhhhccCCCCC
Q psy12099 84 GKSRLEDYFQEFTRYQT 100 (174)
Q Consensus 84 ~~~~l~~~~~~~~~~~~ 100 (174)
....+.+.+..++-..+
T Consensus 164 ~k~~i~~~l~~~~i~~~ 180 (276)
T cd01850 164 FKQRIMEDIEEHNIKIY 180 (276)
T ss_pred HHHHHHHHHHHcCCceE
Confidence 13456666666665433
No 285
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.15 E-value=0.00092 Score=56.36 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=59.8
Q ss_pred CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
|.||||-+.-. .+...-.+.||.|+||+|.+ .... ......+. ....+.|+++|.|
T Consensus 269 l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~----------~~~~-~~d~~~~~-----~~~~~~~~i~v~N 332 (454)
T COG0486 269 LVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDAS----------QPLD-KEDLALIE-----LLPKKKPIIVVLN 332 (454)
T ss_pred EEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCC----------CCCc-hhhHHHHH-----hcccCCCEEEEEe
Confidence 46999986432 12234567999999999994 3211 11112222 1235789999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIR 122 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~ 122 (174)
|.||..+... ..+ +..+.+ +....||++|+|.+...++..+++.
T Consensus 333 K~DL~~~~~~---~~~-~~~~~~--~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 333 KADLVSKIEL---ESE-KLANGD--AIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred chhccccccc---chh-hccCCC--ceEEEEecCccCHHHHHHHHHHHHh
Confidence 9999875422 111 222222 3567899999997655555444443
No 286
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.07 E-value=0.00047 Score=47.25 Aligned_cols=56 Identities=5% Similarity=0.015 Sum_probs=40.7
Q ss_pred hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 11 RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 11 r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
......+++++++++.|++. +..+++... |...+.... -.+.|+++++||.|+..+
T Consensus 37 ~~~~~~~~~s~~~~~~v~~~----------~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~ 92 (124)
T smart00010 37 DVYDPTSYESFDVVLQCWRV----------DDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEE 92 (124)
T ss_pred hhccccccCCCCEEEEEEEc----------cCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhh
Confidence 34456788999999999999 777777554 655554322 246889999999998543
No 287
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.96 E-value=0.0033 Score=50.07 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=29.8
Q ss_pred hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 15 IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 15 ~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
....+.+|.+|+|+|.. .+.+... ..+...+ .+.|+++|+||+|+..
T Consensus 16 ~~~l~~aDvVl~V~Dar----------~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~ 62 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDAR----------IPLSSRN--PMIDEIR-----GNKPRLIVLNKADLAD 62 (276)
T ss_pred HHHHhhCCEEEEEEeCC----------CCCCCCC--hhHHHHH-----CCCCEEEEEEccccCC
Confidence 34567999999999983 2211111 1122222 2579999999999853
No 288
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.92 E-value=0.00072 Score=51.37 Aligned_cols=26 Identities=15% Similarity=-0.032 Sum_probs=22.5
Q ss_pred eeeeecccccchhHHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDIIQ 164 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i~ 164 (174)
..+++|||++|+||+++|+++.+..+
T Consensus 171 ~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 171 KPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56789999999999999999987653
No 289
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.92 E-value=0.0013 Score=59.18 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=45.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+.||+|+..|.......++.+|++|+|+|.. ..- .......+...... +.|.+++.||+|+...
T Consensus 91 liDtPG~~df~~~~~~~l~~~D~avlVvda~----------~g~-~~~t~~~~~~~~~~----~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAV----------EGV-MPQTETVLRQALRE----RVKPVLFINKVDRLIK 154 (731)
T ss_pred EEcCCCccChHHHHHHHHHhcCEEEEEEECC----------CCC-CccHHHHHHHHHHc----CCCeEEEEECchhhcc
Confidence 4699999999887788889999999999983 221 12233444443332 3577899999998743
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.92 E-value=0.005 Score=52.23 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=43.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|.||.|+.-|..--..-+.=+|++++++|.++ ..+-...-..+..+.. +.+-|+|.||.|.+.++
T Consensus 72 IvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 72 IVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALAL----GLKPIVVINKIDRPDAR 136 (603)
T ss_pred EecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCC
Confidence 57999998877766667778999999999942 1222222333444432 44556778999998765
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=96.89 E-value=0.0017 Score=59.39 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=46.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
+.||+|+..|-.-...-++.+|++|+|+|.. ..- .......|+.+.. .+.|+++|.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~----------~g~-~~~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCV----------EGV-CVQTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECC----------CCc-CccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 4699999988777777889999999999983 221 1223345555543 257999999999998
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.87 E-value=0.0037 Score=47.51 Aligned_cols=24 Identities=4% Similarity=-0.132 Sum_probs=21.2
Q ss_pred eeeeecccccchhHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDI 162 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~ 162 (174)
..++.+||+++.|++++|+++.+.
T Consensus 182 ~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 182 AEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568899999999999999998764
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.86 E-value=0.0019 Score=59.09 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=46.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
+.||+|+..|-.-...-.+.+|++|+|+|.. ..-. ......|+.+.. .+.|++++.||+|+.
T Consensus 102 liDtPGh~dF~~e~~~al~~~D~ailVvda~----------~Gv~-~~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCI----------EGVC-VQTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred EECCCCHHHHHHHHHHHHhhcCEEEEEEECC----------CCCc-ccHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 4699999999887777889999999999983 2211 123344555543 368999999999998
No 294
>KOG1490|consensus
Probab=96.84 E-value=0.0036 Score=53.47 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=63.3
Q ss_pred CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCC
Q psy12099 22 TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTP 101 (174)
Q Consensus 22 ~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (174)
.+|+|+.|+|+-+ --+..+-..+|.++. |.|.|.|+||++||+|+... +++.
T Consensus 249 aaVLYfmDLSe~C--------GySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~------edL~------------ 300 (620)
T KOG1490|consen 249 SAVLYFMDLSEMC--------GYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRP------EDLD------------ 300 (620)
T ss_pred hhheeeeechhhh--------CCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCc------cccC------------
Confidence 5789999996421 245667788898874 56899999999999998642 2221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHHHHHHhh
Q psy12099 102 LDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH 167 (174)
Q Consensus 102 ~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~~i~~~~ 167 (174)
+.-++..+.+. ....+.+.+||..+.+||-.|=....+.++...
T Consensus 301 ----------~~~~~ll~~~~------------~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 301 ----------QKNQELLQTII------------DDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred ----------HHHHHHHHHHH------------hccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 11111222221 123367788999999988887777666666543
No 295
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.84 E-value=0.024 Score=42.52 Aligned_cols=104 Identities=12% Similarity=0.275 Sum_probs=57.1
Q ss_pred hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccC
Q psy12099 17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFT 96 (174)
Q Consensus 17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~ 96 (174)
...+++++|||+++..+ ...-...++++..+..... -.++++++|+.|.... ..+.++..+..
T Consensus 80 ~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~------~~~~~~~~~~~ 142 (196)
T cd01852 80 SAPGPHAFLLVVPLGRF---------TEEEEQAVETLQELFGEKV--LDHTIVLFTRGDDLEG------GTLEDYLENSC 142 (196)
T ss_pred cCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHHhChHh--HhcEEEEEECccccCC------CcHHHHHHhcc
Confidence 35789999999998321 1222344555555544221 2478899999996542 23444433221
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeec--ccccchhHHHHHHHHHHHHHH
Q psy12099 97 RYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFT--CAVDTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 97 ~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~t--sA~d~~~i~~~f~~~~~~i~~ 165 (174)
..+. .+... ++.+-..+... ++.++.++.++++.|.+.+..
T Consensus 143 ----------------------~~l~----~l~~~--c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 143 ----------------------EALK----RLLEK--CGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred ----------------------HHHH----HHHHH--hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 1111 11110 22232222222 478899999999999888765
No 296
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0038 Score=52.03 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=26.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACS 31 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s 31 (174)
|.|+.|++-|-+-...=...||++|+|+|++
T Consensus 89 IiDaPGHrdFvknmItGasqAD~aVLVV~a~ 119 (428)
T COG5256 89 IIDAPGHRDFVKNMITGASQADVAVLVVDAR 119 (428)
T ss_pred EeeCCchHHHHHHhhcchhhccEEEEEEECC
Confidence 5799999888887777778899999999994
No 297
>PRK01889 GTPase RsgA; Reviewed
Probab=96.66 E-value=0.015 Score=48.14 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=27.9
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.++|.+++|+++. ++.+. . .++-+-.++. ..+++.+||+||+||..+
T Consensus 111 ANvD~vliV~s~~---------p~~~~-~-~ldr~L~~a~---~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 111 ANVDTVFIVCSLN---------HDFNL-R-RIERYLALAW---ESGAEPVIVLTKADLCED 157 (356)
T ss_pred EeCCEEEEEEecC---------CCCCh-h-HHHHHHHHHH---HcCCCEEEEEEChhcCCC
Confidence 5789999999992 12221 1 1122222222 236777899999999643
No 298
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.63 E-value=0.0083 Score=48.08 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=29.6
Q ss_pred hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
.-...+|.+|+|+|.. .+.+... ..+...+. +.|+++|+||+|+..
T Consensus 20 ~~l~~aDvIL~VvDar----------~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~ 65 (287)
T PRK09563 20 ENLKLVDVVIEVLDAR----------IPLSSEN--PMIDKIIG-----NKPRLLILNKSDLAD 65 (287)
T ss_pred HHhhhCCEEEEEEECC----------CCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCC
Confidence 3567999999999983 2211111 12233332 579999999999853
No 299
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.35 E-value=0.017 Score=39.43 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=34.7
Q ss_pred CeeCCCCch----------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQRD----------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq~~----------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv 70 (174)
++||+|-.. ++..+. ..+.++++|||+|. ..... ......++.+ + .+.|+++|
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~----------~~~~~-~~~~~~~~~l-~----~~~~~i~v 113 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDA----------SNPIT-EDDKNILREL-K----NKKPIILV 113 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEET----------TSHSH-HHHHHHHHHH-H----TTSEEEEE
T ss_pred EEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEEC----------CCCCC-HHHHHHHHHH-h----cCCCEEEE
Confidence 579988632 122333 34799999999998 44211 2223333443 2 57899999
Q ss_pred EeC
Q psy12099 71 LNK 73 (174)
Q Consensus 71 ~NK 73 (174)
+||
T Consensus 114 ~NK 116 (116)
T PF01926_consen 114 LNK 116 (116)
T ss_dssp EES
T ss_pred EcC
Confidence 998
No 300
>KOG0705|consensus
Probab=96.27 E-value=0.014 Score=50.43 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=69.7
Q ss_pred hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099 15 IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE 94 (174)
Q Consensus 15 ~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~ 94 (174)
..|-.-++++||||.+ .+.++++....+...+........+|+++++.+. ....... ...
T Consensus 90 aQft~wvdavIfvf~~----------~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~--rv~------- 149 (749)
T KOG0705|consen 90 AQFCQWVDAVVFVFSV----------EDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRP--RVI------- 149 (749)
T ss_pred hhhhhhccceEEEEEe----------ccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhcccc--ccc-------
Confidence 4566789999999999 8999999888877777655444567888877653 3222222 000
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHHHHHHh
Q psy12099 95 FTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 95 ~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~~i~~~ 166 (174)
....+.... ++.++..++++||+.|.|+..+|..+...++..
T Consensus 150 ------------------~da~~r~l~------------~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 150 ------------------TDDRARQLS------------AQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred ------------------chHHHHHHH------------HhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 111122221 234567788999999999999999999877654
No 301
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.24 E-value=0.053 Score=41.12 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=30.3
Q ss_pred hHhhhhc---CCCEEEEEEeCCCccccccCCCCcch-HH-HHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 13 KWIQCFN---DVTAIIFVTACSSYNMVLREDPTQNR-LR-ESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 13 ~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~~~~-~~-~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+..+|++ +-.+++.++|. ...-. .+ +..+|+.. .++|+++++||+|...
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~----------r~~~~~~D~em~~~l~~-------~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDA----------RHPPKDLDREMIEFLLE-------LGIPVIVVLTKADKLK 149 (200)
T ss_pred HHHHHHhhchhheEEEEEEEC----------CCCCcHHHHHHHHHHHH-------cCCCeEEEEEccccCC
Confidence 3356765 45788888998 22221 11 22333332 3789999999999765
No 302
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.02 Score=46.66 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=67.1
Q ss_pred eeCCCCchhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 2 FDVGGQRDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
.|..|+|-.- ...+.++ |++|+|++.. +++.+....+. +-.+ .- +.-..++++-||.||..
T Consensus 91 VDaPGHe~LM---ATMLsGAAlMDgAlLvIaAN---EpcPQPQT~EH-------l~Al-eI--igik~iiIvQNKIDlV~ 154 (415)
T COG5257 91 VDAPGHETLM---ATMLSGAALMDGALLVIAAN---EPCPQPQTREH-------LMAL-EI--IGIKNIIIVQNKIDLVS 154 (415)
T ss_pred eeCCchHHHH---HHHhcchhhhcceEEEEecC---CCCCCCchHHH-------HHHH-hh--hccceEEEEecccceec
Confidence 4777777533 3445554 8899999883 33322222222 2111 11 12246899999999986
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
+... -+++++.++|++... +. ...+.-+||..+.||+.+++.
T Consensus 155 ~E~A----------------------------lE~y~qIk~FvkGt~--------Ae--~aPIIPiSA~~~~NIDal~e~ 196 (415)
T COG5257 155 RERA----------------------------LENYEQIKEFVKGTV--------AE--NAPIIPISAQHKANIDALIEA 196 (415)
T ss_pred HHHH----------------------------HHHHHHHHHHhcccc--------cC--CCceeeehhhhccCHHHHHHH
Confidence 5322 135677777765432 11 234567899999999999999
Q ss_pred HHHHHH
Q psy12099 159 CRDIIQ 164 (174)
Q Consensus 159 ~~~~i~ 164 (174)
+.+.|-
T Consensus 197 i~~~Ip 202 (415)
T COG5257 197 IEKYIP 202 (415)
T ss_pred HHHhCC
Confidence 998773
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.09 E-value=0.068 Score=43.83 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=30.1
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
.||+|-..-... ...-+|.++++.+. .....+..... .++. ..-++|.||.|+..
T Consensus 154 ieT~Gv~qs~~~---i~~~aD~vlvv~~p----------~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~ 208 (332)
T PRK09435 154 VETVGVGQSETA---VAGMVDFFLLLQLP----------GAGDELQGIKK---GIME------LADLIVINKADGDN 208 (332)
T ss_pred EECCCCccchhH---HHHhCCEEEEEecC----------CchHHHHHHHh---hhhh------hhheEEeehhcccc
Confidence 567776522211 34568998888754 33333333221 1221 22379999999864
No 304
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.038 Score=45.54 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=39.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH--HHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD--LFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~--~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
|=||.|++.|-+-...=-..|+.+|+++|. ...-++.+.. .+..++ .-..++|..||+||.+
T Consensus 90 iADTPGHeQYTRNMaTGASTadlAIlLVDA-----------R~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvd 153 (431)
T COG2895 90 IADTPGHEQYTRNMATGASTADLAILLVDA-----------RKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVD 153 (431)
T ss_pred EecCCcHHHHhhhhhcccccccEEEEEEec-----------chhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccc
Confidence 359999998865444334567899999998 3333333321 122222 2347888899999975
No 305
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.00 E-value=0.039 Score=44.48 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.1
Q ss_pred CCcEEEEEeCCchhhH
Q psy12099 64 TISVILFLNKQDLLAE 79 (174)
Q Consensus 64 ~~~iilv~NK~Dl~~~ 79 (174)
+.|.++++||+|+...
T Consensus 172 ~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 172 EIADIYVVNKADGEGA 187 (300)
T ss_pred hhccEEEEEcccccch
Confidence 5677999999999754
No 306
>KOG0468|consensus
Probab=96.00 E-value=0.017 Score=51.10 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=47.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|.||.|+-.|..-...-++-+|++++|+|+. +--. ...-..++..++ .+.|+++++||.|+.-..
T Consensus 201 ilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~----------EGVm-lntEr~ikhaiq----~~~~i~vviNKiDRLilE 265 (971)
T KOG0468|consen 201 ILDTPGHVNFSDETTASLRLSDGVVLVVDVA----------EGVM-LNTERIIKHAIQ----NRLPIVVVINKVDRLILE 265 (971)
T ss_pred eecCCCcccchHHHHHHhhhcceEEEEEEcc----------cCce-eeHHHHHHHHHh----ccCcEEEEEehhHHHHHH
Confidence 5799999999888888889999999999993 2222 222233344443 368999999999987543
No 307
>KOG1423|consensus
Probab=95.85 E-value=0.058 Score=43.72 Aligned_cols=49 Identities=27% Similarity=0.416 Sum_probs=31.7
Q ss_pred hcCCCEEEEEEeCCCccccccCCCCcchHH-HHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099 18 FNDVTAIIFVTACSSYNMVLREDPTQNRLR-ESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV 81 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~-~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~ 81 (174)
...||+++.++|.++ .+.-+. ..+..++. ..++|-+|+.||.|....+.
T Consensus 153 ~q~AD~vvVv~Das~---------tr~~l~p~vl~~l~~------ys~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 153 AQNADCVVVVVDASA---------TRTPLHPRVLHMLEE------YSKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred HhhCCEEEEEEeccC---------CcCccChHHHHHHHH------HhcCCceeeccchhcchhhh
Confidence 457999999999952 222222 12222232 24678899999999987763
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.02 Score=51.26 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=47.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.||.|+=-|-.--..-++-+|++|.|+|.. ..-...+...|+.... .++|.++|.||+|.....
T Consensus 80 lIDTPGHVDFt~EV~rslrvlDgavvVvdav-----------eGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 80 LIDTPGHVDFTIEVERSLRVLDGAVVVVDAV-----------EGVEPQTETVWRQADK----YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred EeCCCCccccHHHHHHHHHhhcceEEEEECC-----------CCeeecHHHHHHHHhh----cCCCeEEEEECccccccC
Confidence 4699999777776677778899999999982 2222234455666544 378999999999987554
No 309
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.13 Score=43.47 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=39.8
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.|+.|++++-+--..=..+.+++++|++. + ..-.....+.+.- ++. +.....++++||+|+.++
T Consensus 55 IDvpgh~~~i~~miag~~~~d~alLvV~~----------d-eGl~~qtgEhL~i-Ldl--lgi~~giivltk~D~~d~ 118 (447)
T COG3276 55 IDVPGHPDFISNLLAGLGGIDYALLVVAA----------D-EGLMAQTGEHLLI-LDL--LGIKNGIIVLTKADRVDE 118 (447)
T ss_pred eeCCCcHHHHHHHHhhhcCCceEEEEEeC----------c-cCcchhhHHHHHH-HHh--cCCCceEEEEeccccccH
Confidence 58889887765444445688999999998 2 2222222222222 121 234467899999999865
No 310
>KOG3905|consensus
Probab=95.29 E-value=0.4 Score=39.36 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=22.4
Q ss_pred eeeeecccccchhHHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDIIQ 164 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i~ 164 (174)
...++||++.+.|++-++..|...+.
T Consensus 265 aaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 265 AALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ceeEEeecccccchHHHHHHHHHHhc
Confidence 45678999999999999999987765
No 311
>COG1084 Predicted GTPase [General function prediction only]
Probab=95.26 E-value=0.068 Score=43.52 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=35.7
Q ss_pred CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
.++|+|++|.|+.+ -=++++-..+|+++... +. .|+++|.||.|+..
T Consensus 248 ~~~IlF~~D~Se~c--------gy~lE~Q~~L~~eIk~~--f~-~p~v~V~nK~D~~~ 294 (346)
T COG1084 248 AGVILFLFDPSETC--------GYSLEEQISLLEEIKEL--FK-APIVVVINKIDIAD 294 (346)
T ss_pred cCeEEEEEcCcccc--------CCCHHHHHHHHHHHHHh--cC-CCeEEEEecccccc
Confidence 46799999997532 34566777888887654 44 89999999999873
No 312
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.069 Score=47.24 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=60.8
Q ss_pred hhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchh
Q psy12099 12 RKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLE 89 (174)
Q Consensus 12 ~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~ 89 (174)
....+|. ..+|.+|-|+|. ++. +..+...-++++- +.|+++++|+.|.-+++-- ..+..
T Consensus 71 ~Var~~ll~~~~D~ivnVvDA----------tnL---eRnLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi--~ID~~ 131 (653)
T COG0370 71 KVARDFLLEGKPDLIVNVVDA----------TNL---ERNLYLTLQLLEL----GIPMILALNMIDEAKKRGI--RIDIE 131 (653)
T ss_pred HHHHHHHhcCCCCEEEEEccc----------chH---HHHHHHHHHHHHc----CCCeEEEeccHhhHHhcCC--cccHH
Confidence 3455665 367999999999 444 4455555555543 6789999999998766422 34555
Q ss_pred hhhhccCCCCCCCCCCCCCCCChHHHHHH
Q psy12099 90 DYFQEFTRYQTPLDATPDPGEDPIVIRAK 118 (174)
Q Consensus 90 ~~~~~~~~~~~~~~a~~~~g~~~~~~~a~ 118 (174)
+.-...+-+..+++|++|+|.++....+.
T Consensus 132 ~L~~~LGvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 132 KLSKLLGVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred HHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 55566777889999999999655544443
No 313
>KOG0458|consensus
Probab=95.05 E-value=0.018 Score=49.91 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=37.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCcc--ccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYN--MVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~--~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|..|+.-|-.-...=-..+|..|+|+|++- + +.-++ ..+...+...+++. +.-..++++.||+|+.
T Consensus 259 liDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd--~~gQtrEha~llr~------Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 259 LIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFD--PGGQTREHALLLRS------LGISQLIVAINKMDLV 328 (603)
T ss_pred EecCCCccccchhhhccccccceEEEEEECCc-chhhhccC--CCCchHHHHHHHHH------cCcceEEEEeeccccc
Confidence 35777876665444433346789999999941 0 00001 11122222222222 2345889999999986
No 314
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.048 Score=46.13 Aligned_cols=63 Identities=24% Similarity=0.420 Sum_probs=45.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+.||.|++-|..=.-.-+..+|++|.|+|.+ .-.+ ...+++|+ +++ +.++||+-+.||+|...
T Consensus 85 LLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA---------KGiE--~qT~KLfe-Vcr---lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 85 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA---------KGIE--PQTLKLFE-VCR---LRDIPIFTFINKLDREG 147 (528)
T ss_pred ccCCCCccccchhHHHHHHhhheeeEEEecc---------cCcc--HHHHHHHH-HHh---hcCCceEEEeecccccc
Confidence 5799999988766555567899999999994 2221 12334443 343 57899999999999864
No 315
>KOG3887|consensus
Probab=94.87 E-value=0.57 Score=36.97 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=68.6
Q ss_pred CeeCCCCchhhhh---HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRK---WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~---w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~NK~Dl 76 (174)
+||.+||-.+-.- ....|+++-+.|||+|. ..+.++....+-.-+.+. .-.+++-+=++..|.|.
T Consensus 79 v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDa-----------Qddy~eala~L~~~v~raykvNp~in~EVfiHKvDG 147 (347)
T KOG3887|consen 79 VWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDA-----------QDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG 147 (347)
T ss_pred EeecCCccccCCCccCHHHHHhccCeEEEEEec-----------hHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence 6999999655322 24568999999999998 233333332322222221 12457788899999998
Q ss_pred hhHHHhcc-ccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099 77 LAEKVKAG-KSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV 155 (174)
Q Consensus 77 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~ 155 (174)
..+..+.. ...+ .+.+.+-+++. +-.+-++.+|.||-.|- .|-++
T Consensus 148 Lsdd~kietqrdI-------------------------~qr~~d~l~d~--------gle~v~vsf~LTSIyDH-SIfEA 193 (347)
T KOG3887|consen 148 LSDDFKIETQRDI-------------------------HQRTNDELADA--------GLEKVQVSFYLTSIYDH-SIFEA 193 (347)
T ss_pred CchhhhhhhHHHH-------------------------HHHhhHHHHhh--------hhccceEEEEEeeecch-HHHHH
Confidence 86643310 0111 11111112211 12345688899988875 46667
Q ss_pred HHHHHHHHHH
Q psy12099 156 FNDCRDIIQR 165 (174)
Q Consensus 156 f~~~~~~i~~ 165 (174)
|..+...++.
T Consensus 194 FSkvVQkLip 203 (347)
T KOG3887|consen 194 FSKVVQKLIP 203 (347)
T ss_pred HHHHHHHHhh
Confidence 7766665543
No 316
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=94.78 E-value=0.35 Score=40.55 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=66.3
Q ss_pred eeCCCCchhhhhH--hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 2 FDVGGQRDERRKW--IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 2 wD~~Gq~~~r~~w--~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.||+|+|++-+-. -..-+..|..++++.. ++- -..-..+.+--++. ...|++++.+|+|+..+
T Consensus 206 VDtvGHEpwLrTtirGL~gqk~dYglLvVaA----------ddG-~~~~tkEHLgi~~a----~~lPviVvvTK~D~~~d 270 (527)
T COG5258 206 VDTVGHEPWLRTTIRGLLGQKVDYGLLVVAA----------DDG-VTKMTKEHLGIALA----MELPVIVVVTKIDMVPD 270 (527)
T ss_pred EecCCccHHHHHHHHHHhccccceEEEEEEc----------cCC-cchhhhHhhhhhhh----hcCCEEEEEEecccCcH
Confidence 6999999986533 3344678999999987 222 22233333333322 36799999999998743
Q ss_pred H-HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099 80 K-VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF 156 (174)
Q Consensus 80 ~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f 156 (174)
. +......++..+.--+..+.+... ..+.-.|..-++ ..+.-+.++.||+.+|++.+-+-
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~------~~d~v~aa~a~k-----------~~~~vvPi~~tSsVTg~GldlL~ 331 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKD------TDDVVLAAKAMK-----------AGRGVVPIFYTSSVTGEGLDLLD 331 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeec------cchhHHhhhhhh-----------cCCceEEEEEEecccCccHHHHH
Confidence 3 221112333333322222222110 001111111111 22336788999999999876443
No 317
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.69 E-value=0.36 Score=34.20 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=58.0
Q ss_pred eeCCCCchhhhhHhhh----hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 2 FDVGGQRDERRKWIQC----FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y----~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
.||.|---..+.|-|- ..+++.+++|-.. +++.+. |-..... .-..|+|=+.+|.||.
T Consensus 42 IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a----------nd~~s~------f~p~f~~--~~~k~vIgvVTK~DLa 103 (148)
T COG4917 42 IDTPGEYFEHPRWYHALITTLQDADVIIYVHAA----------NDPESR------FPPGFLD--IGVKKVIGVVTKADLA 103 (148)
T ss_pred cCCchhhhhhhHHHHHHHHHhhccceeeeeecc----------cCcccc------CCccccc--ccccceEEEEeccccc
Confidence 3666654444556332 3588889999888 555331 1111111 1234688888999998
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
+.. +++.++.|+.. ++. -.++++||.|.++|++++.
T Consensus 104 ed~--------------------------------dI~~~~~~L~e----------aGa--~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 104 EDA--------------------------------DISLVKRWLRE----------AGA--EPIFETSAVDNQGVEELVD 139 (148)
T ss_pred chH--------------------------------hHHHHHHHHHH----------cCC--cceEEEeccCcccHHHHHH
Confidence 421 12233334332 222 2467899999999999998
Q ss_pred HHHH
Q psy12099 158 DCRD 161 (174)
Q Consensus 158 ~~~~ 161 (174)
.+..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 7753
No 318
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=94.67 E-value=0.086 Score=38.08 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=37.4
Q ss_pred CeeCCCCc----hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQR----DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~----~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
+.||.|-. ....++..|+..++++|||.+. +..-+-.+. ..+...... ....+++|.||.
T Consensus 105 lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~----------~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 105 LVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDA----------NQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEET----------TSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred EEeCCccccchhhhHHHHHHhhccCCEEEEEecc----------CcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 46777763 2346789999999999999999 443332333 333333332 233488888984
No 319
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.54 E-value=0.36 Score=37.19 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=33.0
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
.||+|.- ..+. ...+.++.+++++|.+ ..... .....+.. +.. .+.| ++++.||.|+..
T Consensus 88 vDtPg~~--~~~l-~~ak~aDvVllviDa~----------~~~~~-~~~~i~~~-l~~---~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 88 IECPNDI--NAMI-DIAKVADLVLLLIDAS----------FGFEM-ETFEFLNI-LQV---HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred EeCCchH--HHHH-HHHHhcCEEEEEEecC----------cCCCH-HHHHHHHH-HHH---cCCCeEEEEEeccccCC
Confidence 5777743 2222 2357899999999983 22111 11222332 222 2356 455999999863
No 320
>KOG1143|consensus
Probab=94.46 E-value=0.16 Score=42.46 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=67.6
Q ss_pred CeeCCCCchhhhhHhhhhcC--CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFND--VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~--~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+.|++|+.+|.+-..+-+.+ .+++++|++. . ..--....+.+.-+.. -++|+.++.+|+|+..
T Consensus 253 fiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA----------~-~Gi~~tTrEHLgl~~A----L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 253 FIDLAGHAKYQKTTIHGLTGYTPHFACLVVSA----------D-RGITWTTREHLGLIAA----LNIPFFVLVTKMDLVD 317 (591)
T ss_pred EeecccchhhheeeeeecccCCCceEEEEEEc----------C-CCCccccHHHHHHHHH----hCCCeEEEEEeecccc
Confidence 36999999998877665543 4677777776 1 1111111222222221 2789999999999986
Q ss_pred HHHh-ccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHH
Q psy12099 79 EKVK-AGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRR 154 (174)
Q Consensus 79 ~~~~-~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~ 154 (174)
..-. ..-.+++......+..-.|-- =+..++.+.+|.+- +....+.++-.|..+|++++-
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~---Vt~~ddAv~Aaq~~-------------~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKR---VTTKDDAVKAAQEL-------------CSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceE---eechHHHHHHHHHh-------------ccCCceeEEEEeecCccchhH
Confidence 5211 002345545444443211110 02334455555543 233456777788888887653
No 321
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.22 E-value=0.13 Score=41.59 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=14.0
Q ss_pred CCCcEEEEEeCCchhhHH
Q psy12099 63 RTISVILFLNKQDLLAEK 80 (174)
Q Consensus 63 ~~~~iilv~NK~Dl~~~~ 80 (174)
.++..+|++||+||..+.
T Consensus 109 ~gi~pvIvlnK~DL~~~~ 126 (301)
T COG1162 109 GGIEPVIVLNKIDLLDDE 126 (301)
T ss_pred cCCcEEEEEEccccCcch
Confidence 467777889999998654
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.58 E-value=0.13 Score=41.47 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=21.4
Q ss_pred ceeeeecccccchhHHHHHHHHHHH
Q psy12099 138 YCYPHFTCAVDTENIRRVFNDCRDI 162 (174)
Q Consensus 138 ~~~~~~tsA~d~~~i~~~f~~~~~~ 162 (174)
...++.+||+++++++++.+++.+.
T Consensus 263 ~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 263 EIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999763
No 323
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.53 E-value=0.26 Score=46.94 Aligned_cols=72 Identities=18% Similarity=0.354 Sum_probs=44.1
Q ss_pred CeeCCC----Cc----hhhhhHhhhhc---------CCCEEEEEEeCCCccccccCCCCcchH---HHHHHHHHHHHcCC
Q psy12099 1 MFDVGG----QR----DERRKWIQCFN---------DVTAIIFVTACSSYNMVLREDPTQNRL---RESLDLFKSIWNNR 60 (174)
Q Consensus 1 iwD~~G----q~----~~r~~w~~y~~---------~~~~ii~v~d~s~~~~~~~e~~~~~~~---~~~~~~~~~i~~~~ 60 (174)
++||+| |+ ..+..|..++. ..+|||+++|+++.-. .+...+. ......+.++.+.
T Consensus 165 liDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~----~~~~~~~~~a~~lR~rl~el~~~- 239 (1169)
T TIGR03348 165 LIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLT----ADPAERKAHARAIRQRLQELREQ- 239 (1169)
T ss_pred EEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhC----CCHHHHHHHHHHHHHHHHHHHHH-
Confidence 478998 22 34567877654 6899999999953211 1111111 2233444554433
Q ss_pred CCCCCcEEEEEeCCchh
Q psy12099 61 WLRTISVILFLNKQDLL 77 (174)
Q Consensus 61 ~~~~~~iilv~NK~Dl~ 77 (174)
.....||.|+++|+|+.
T Consensus 240 lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLL 256 (1169)
T ss_pred hCCCCCEEEEEecchhh
Confidence 23478999999999985
No 324
>KOG1424|consensus
Probab=93.43 E-value=0.22 Score=42.89 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=35.5
Q ss_pred hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHh
Q psy12099 10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVK 82 (174)
Q Consensus 10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~ 82 (174)
.|.+|. -.+-.|.||.++|. -++ .|.....+-.-+ .. .......+|+.||.||......
T Consensus 165 WRQLWR-VlErSDivvqIVDA----------RnP-llfr~~dLe~Yv-ke-~d~~K~~~LLvNKaDLl~~~qr 223 (562)
T KOG1424|consen 165 WRQLWR-VLERSDIVVQIVDA----------RNP-LLFRSPDLEDYV-KE-VDPSKANVLLVNKADLLPPEQR 223 (562)
T ss_pred HHHHHH-HHhhcceEEEEeec----------CCc-cccCChhHHHHH-hc-cccccceEEEEehhhcCCHHHH
Confidence 355665 34577999999999 333 222222222222 22 1245678899999999876543
No 325
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=93.23 E-value=0.34 Score=37.95 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=32.6
Q ss_pred hhhHhhhhcCC-CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 11 RRKWIQCFNDV-TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 11 r~~w~~y~~~~-~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+.+...|.++. +.+++|+|.. .+... .+.....+.+- ....+.++|+||.|...
T Consensus 152 ~~lv~~yi~~~~~IIL~Vvda~---------~d~~~-~d~l~ia~~ld----~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 152 KDMIKQFISKEECLILAVTPAN---------VDLAN-SDALKLAKEVD----PQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHHhCccCeEEEEEECC---------CCCCc-hhHHHHHHHHH----HcCCcEEEEEECCCCCC
Confidence 34567788854 5778888772 12221 12233333331 24679999999999864
No 326
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=92.91 E-value=0.71 Score=36.62 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCEEEEEEeCCCccccccCCCCcch-HH----HHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNR-LR----ESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~-~~----~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
..+|||+++|+.+- + ..+...+ +. ....-+.++.+. .....||.|++||+|+.
T Consensus 25 PlnGvil~vs~~~L---l-~~~~~~r~l~~~a~~lR~rL~el~~~-lg~~~PVYvv~Tk~D~l 82 (266)
T PF14331_consen 25 PLNGVILTVSVDDL---L-NADEAERELEALARALRQRLEELQRT-LGVRLPVYVVFTKCDLL 82 (266)
T ss_pred CCCEEEEEEEHHHH---h-cCChhhhHHHHHHHHHHHHHHHHHHH-hCCCCCeEeeeECCCcc
Confidence 57999999999432 1 1122222 22 223334444332 33578999999999985
No 327
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=92.67 E-value=0.11 Score=38.49 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=13.6
Q ss_pred CCcEEEEEeCCchhhH
Q psy12099 64 TISVILFLNKQDLLAE 79 (174)
Q Consensus 64 ~~~iilv~NK~Dl~~~ 79 (174)
+.|+++++||+|+...
T Consensus 30 ~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 30 NKKLVLVLNKIDLVPK 45 (172)
T ss_pred CCCEEEEEehhhcCCH
Confidence 5799999999999643
No 328
>KOG1191|consensus
Probab=92.66 E-value=0.52 Score=40.50 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=18.4
Q ss_pred ecccccchhHHHHHHHHHHHHHHh
Q psy12099 143 FTCAVDTENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 143 ~tsA~d~~~i~~~f~~~~~~i~~~ 166 (174)
++|++++++++.+.+.+.+.....
T Consensus 429 ~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 429 EVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred EeeechhhhHHHHHHHHHHHHHHh
Confidence 378888888888888887776654
No 329
>COG3596 Predicted GTPase [General function prediction only]
Probab=92.21 E-value=0.97 Score=36.19 Aligned_cols=124 Identities=9% Similarity=0.127 Sum_probs=73.4
Q ss_pred CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099 1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK 73 (174)
+||+.|-+. +|.+...|....+-++.+.+. .++. +.-....+++++.... +.+++++.|.
T Consensus 91 lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~----------~dra-L~~d~~f~~dVi~~~~--~~~~i~~VtQ 157 (296)
T COG3596 91 LWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKA----------DDRA-LGTDEDFLRDVIILGL--DKRVLFVVTQ 157 (296)
T ss_pred EecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccC----------CCcc-ccCCHHHHHHHHHhcc--CceeEEEEeh
Confidence 699999876 788888899999988888888 3332 2223355666654422 3789999999
Q ss_pred CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099 74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR 153 (174)
Q Consensus 74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~ 153 (174)
+|.... ...| ++++ ...-.+..+|+..+-..+.+.- ..-+ .++..++...-|++
T Consensus 158 ~D~a~p--------~~~W--~~~~-------------~~p~~a~~qfi~~k~~~~~~~~-q~V~--pV~~~~~r~~wgl~ 211 (296)
T COG3596 158 ADRAEP--------GREW--DSAG-------------HQPSPAIKQFIEEKAEALGRLF-QEVK--PVVAVSGRLPWGLK 211 (296)
T ss_pred hhhhcc--------cccc--cccc-------------CCCCHHHHHHHHHHHHHHHHHH-hhcC--CeEEeccccCccHH
Confidence 997432 1111 0110 1112235666666655554411 0112 23344567788888
Q ss_pred HHHHHHHHHH
Q psy12099 154 RVFNDCRDII 163 (174)
Q Consensus 154 ~~f~~~~~~i 163 (174)
.+...+...+
T Consensus 212 ~l~~ali~~l 221 (296)
T COG3596 212 ELVRALITAL 221 (296)
T ss_pred HHHHHHHHhC
Confidence 8887776554
No 330
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=91.41 E-value=0.37 Score=39.18 Aligned_cols=67 Identities=7% Similarity=0.156 Sum_probs=35.9
Q ss_pred CeeCCCCchhhhh-------Hhhhh--cCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQRDERRK-------WIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq~~~r~~-------w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~iilv 70 (174)
|+||+|....... -..|. .+.+++|||..+.. ...... ...++.+..+..... -.+.+++
T Consensus 90 VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~--------~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVV 159 (313)
T TIGR00991 90 IIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDA--------YRVDTLDGQVIRAITDSFGKDI--WRKSLVV 159 (313)
T ss_pred EEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCc--------ccCCHHHHHHHHHHHHHhhhhh--hccEEEE
Confidence 6899998643211 11222 26899999977611 111111 123343444433221 1368999
Q ss_pred EeCCchh
Q psy12099 71 LNKQDLL 77 (174)
Q Consensus 71 ~NK~Dl~ 77 (174)
+++.|..
T Consensus 160 fTh~d~~ 166 (313)
T TIGR00991 160 LTHAQFS 166 (313)
T ss_pred EECCccC
Confidence 9999965
No 331
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=90.88 E-value=1.2 Score=32.68 Aligned_cols=61 Identities=21% Similarity=0.150 Sum_probs=39.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
|.|++|.-... -...+..++.+|+++.. +..++.....+++.+.+ .+.|+.+++||.|...
T Consensus 97 iiDtpp~~~~~--~~~~l~~aD~vliv~~~-----------~~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 97 IIDGPPGIGCP--VIASLTGADAALLVTEP-----------TPSGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred EEECcCCCcHH--HHHHHHcCCEEEEEecC-----------CcccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 46888654322 23456889999999987 34455555555554432 1457889999999643
No 332
>KOG1707|consensus
Probab=90.80 E-value=1.3 Score=38.79 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=45.4
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCC
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTR 97 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~ 97 (174)
..|+.+.++||+ +++.++.-....++.--. ....|+++++.|.|+.+..-.. ..+..+++.+++-
T Consensus 494 ~~cDv~~~~YDs----------S~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~-~iqpde~~~~~~i 558 (625)
T KOG1707|consen 494 AACDVACLVYDS----------SNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRY-SIQPDEFCRQLGL 558 (625)
T ss_pred ceeeeEEEeccc----------CCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhcc-CCChHHHHHhcCC
Confidence 468999999999 677887766665554322 2578999999999997655221 2233677777764
No 333
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.61 E-value=0.65 Score=35.25 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=21.0
Q ss_pred eeeeecccccchhHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i 163 (174)
..+.+||+++|++++++++++....
T Consensus 176 ~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 176 APIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 5677899999999999999887643
No 334
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=90.26 E-value=3.2 Score=31.52 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=31.1
Q ss_pred hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+..+.+++|+|+.+..| ...-...++++..+...... ..++|+++..|.+.
T Consensus 80 ~~~g~ha~llVi~~~r~---------t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLGRF---------TEEDREVLELLQEIFGEEIW--KHTIVVFTHADELE 130 (212)
T ss_dssp TTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGT
T ss_pred ccCCCeEEEEEEecCcc---------hHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccc
Confidence 34689999999999321 11223455666776655433 25778888888654
No 335
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=89.27 E-value=1.3 Score=36.07 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=44.3
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH--
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE-- 79 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~-- 79 (174)
.|+.|+.-|-+-...=--..|+.|+|++.++= +-+.+-+.. +-.....-..+++|+||+|+.+.
T Consensus 80 VDcPGHaDYvKNMItgAaqmDgAILVVsA~dG-------pmPqTrEHi-------LlarqvGvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 80 VDCPGHADYVKNMITGAAQMDGAILVVAATDG-------PMPQTREHI-------LLARQVGVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred ccCCChHHHHHHHhhhHHhcCccEEEEEcCCC-------CCCcchhhh-------hhhhhcCCcEEEEEEecccccCcHH
Confidence 47788776654333222346899999988432 112221111 11111122357888899999852
Q ss_pred HHhccccchhhhhhccCC
Q psy12099 80 KVKAGKSRLEDYFQEFTR 97 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~ 97 (174)
.+.-....+.+.+..|+.
T Consensus 146 llelVemEvreLLs~y~f 163 (394)
T COG0050 146 LLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 222113567777777764
No 336
>KOG2423|consensus
Probab=89.10 E-value=1.3 Score=37.48 Aligned_cols=59 Identities=22% Similarity=0.337 Sum_probs=39.2
Q ss_pred CCchhhhhHhhhhc---CCCEEEEEEeCCCccccccCCCCc--chHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 6 GQRDERRKWIQCFN---DVTAIIFVTACSSYNMVLREDPTQ--NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 6 Gq~~~r~~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~~--~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||. .++|.-.|. ..|++|=|.|. .++ .+- ..++..+... -+...+++|+||+||.-.-
T Consensus 198 GQS--kRIW~ELyKViDSSDVvvqVlDA----------RDPmGTrc----~~ve~ylkke-~phKHli~vLNKvDLVPtw 260 (572)
T KOG2423|consen 198 GQS--KRIWGELYKVIDSSDVVVQVLDA----------RDPMGTRC----KHVEEYLKKE-KPHKHLIYVLNKVDLVPTW 260 (572)
T ss_pred cch--hHHHHHHHHhhcccceeEEeeec----------cCCccccc----HHHHHHHhhc-CCcceeEEEeeccccccHH
Confidence 554 578988775 77899999998 333 222 2233444432 3567899999999997544
Q ss_pred H
Q psy12099 81 V 81 (174)
Q Consensus 81 ~ 81 (174)
+
T Consensus 261 v 261 (572)
T KOG2423|consen 261 V 261 (572)
T ss_pred H
Confidence 3
No 337
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=88.97 E-value=0.95 Score=35.45 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=39.2
Q ss_pred eeC-CCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 2 FDV-GGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 2 wD~-~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
.|| ||-|.|.+... +++|.+|.|+|- +..++..+ +-+..+.+.-. =.+|.+++||.|-.
T Consensus 139 vDtEAGiEHfgRg~~---~~vD~vivVvDp-----------S~~sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 139 VDTEAGIEHFGRGTI---EGVDLVIVVVDP-----------SYKSLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred Eecccchhhhccccc---cCCCEEEEEeCC-----------cHHHHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 455 77777665544 699999999998 34444443 33444444322 35899999999965
No 338
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=86.92 E-value=1.1 Score=35.66 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=15.0
Q ss_pred eeeecccccchhHHHHHHHHHH
Q psy12099 140 YPHFTCAVDTENIRRVFNDCRD 161 (174)
Q Consensus 140 ~~~~tsA~d~~~i~~~f~~~~~ 161 (174)
.+..|||..+.+|.++++.|.+
T Consensus 206 pV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 206 PVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 5556777777777777766654
No 339
>KOG0447|consensus
Probab=86.87 E-value=4.6 Score=35.69 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=56.8
Q ss_pred chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccc
Q psy12099 8 RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSR 87 (174)
Q Consensus 8 ~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~ 87 (174)
+...++..+|+++.++||+|+--.. -+.++ .....++........--|+|++|.|+.++.+.. +.+
T Consensus 436 d~I~~msKayM~NPNAIILCIQDGS--------VDAER-----SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~-PdR 501 (980)
T KOG0447|consen 436 ETIFSISKAYMQNPNAIILCIQDGS--------VDAER-----SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVAS-PSR 501 (980)
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCC--------cchhh-----hhHHHHHHhcCCCCCeeEEEEeecchhhhccCC-HHH
Confidence 3445788999999999999984311 12222 223344444344456778889999998764331 334
Q ss_pred hhhhhhccCCCCCCCCC------CCCCCCC-hHHHHHHHHHHHHHH
Q psy12099 88 LEDYFQEFTRYQTPLDA------TPDPGED-PIVIRAKYFIRDEFL 126 (174)
Q Consensus 88 l~~~~~~~~~~~~~~~a------~~~~g~~-~~~~~a~~~i~~~f~ 126 (174)
+++... |..+|-.| .||.|.. +++++..+|=.+-|.
T Consensus 502 I~kIle---GKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~FF~ 544 (980)
T KOG0447|consen 502 IQQIIE---GKLFPMKALGYFAVVTGKGNSSESIEAIREYEEEFFQ 544 (980)
T ss_pred HHHHHh---cCccchhhcceeEEEecCCCcchhHHHHHHHHHHHhh
Confidence 443321 11122222 3555544 566666776555444
No 340
>PRK09602 translation-associated GTPase; Reviewed
Probab=86.79 E-value=1.7 Score=36.57 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=24.5
Q ss_pred CeeCCC----CchhhhhHhhh---hcCCCEEEEEEeCCC
Q psy12099 1 MFDVGG----QRDERRKWIQC---FNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~G----q~~~r~~w~~y---~~~~~~ii~v~d~s~ 32 (174)
+|||+| +...+.+-..+ +++++++++|+|++.
T Consensus 76 i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 76 LIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred EEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 589999 44455554455 889999999999974
No 341
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=86.20 E-value=3.3 Score=29.21 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=40.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.-. ......+..+|.++++++. +..++......++.+.+.. ...++.++.|+.+-.
T Consensus 49 IiD~p~~~~--~~~~~~l~~aD~vviv~~~-----------~~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 49 IIDTGAGIS--DNVLDFFLAADEVIVVTTP-----------EPTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred EEECCCCCC--HHHHHHHHhCCeEEEEcCC-----------ChhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 468876432 2234567889999999987 4555665555555553321 355788999999754
No 342
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=85.59 E-value=4.2 Score=35.13 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=43.9
Q ss_pred CcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeec
Q psy12099 65 ISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFT 144 (174)
Q Consensus 65 ~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~t 144 (174)
+||+||.+|+|....... ... |. ++.++-..+|++.-.. .+..-.++|
T Consensus 197 ipi~VV~tksD~~~~Lek--~~~-------~~--------------~e~~DfIqq~LR~~cL---------~yGAsL~yt 244 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEK--ETD-------WK--------------EEHFDFIQQYLRTFCL---------KYGASLIYT 244 (472)
T ss_pred cceEEEEecccHHHHHhh--hcc-------cc--------------hhhHHHHHHHHHHHHH---------hcCCeEEEe
Confidence 699999999998764322 101 11 1233444455443221 233456679
Q ss_pred ccccchhHHHHHHHHHHHHHHh
Q psy12099 145 CAVDTENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 145 sA~d~~~i~~~f~~~~~~i~~~ 166 (174)
|++...|++-++..|...+...
T Consensus 245 s~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 245 SVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred eccccccHHHHHHHHHHHhccC
Confidence 9999999999999887776544
No 343
>KOG0461|consensus
Probab=84.76 E-value=9.3 Score=31.94 Aligned_cols=27 Identities=19% Similarity=0.001 Sum_probs=19.0
Q ss_pred eeeeecccccc----hhHHHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDT----ENIRRVFNDCRDIIQR 165 (174)
Q Consensus 139 ~~~~~tsA~d~----~~i~~~f~~~~~~i~~ 165 (174)
..+.+.||.+| +.|.++-+.+...|..
T Consensus 164 ~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 164 SPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 56678899999 6666666666666653
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=83.77 E-value=3.6 Score=33.61 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=35.3
Q ss_pred CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 7 QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 7 q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.++.+.-......++.|+-|+|. -++.+... ..+..++. +.|.++++||.||....
T Consensus 21 ~~k~~~~~~~~~~~~d~vvevvDa----------r~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~ 77 (322)
T COG1161 21 MKKAKRQLKEVLKSVDVVVEVVDA----------RDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKE 77 (322)
T ss_pred hHHHHHHHHHhcccCCEEEEEEec----------cccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHH
Confidence 344445555677899999999999 33332211 11233332 33449999999998654
No 345
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=82.93 E-value=16 Score=27.85 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=37.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.- .......+..++.+|+++.. +..++......+..+++. ...+.++.++.|+.|..
T Consensus 119 iiD~pp~~--~~~~~~~l~~ad~vii~~~~-----------~~~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 119 LIDVPRGP--SPITRQALAAADLVLVVVNA-----------DAACYATLHQQALALFAG-SGPRIGPHFLINQFDPA 181 (246)
T ss_pred EEECCCCc--hHHHHHHHHhCCeEEEEeCC-----------CHHHHHHHHHHHHHHhhc-ccccccceEEeeccCcc
Confidence 46777742 23344556788888888876 344444444344444442 12345678899999854
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=81.95 E-value=4 Score=33.19 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=27.4
Q ss_pred EEEEeCCchhhHHHhcc----ccchh-hhhh--ccCCCCCCCCCCCCCCCChHHHHHHHH
Q psy12099 68 ILFLNKQDLLAEKVKAG----KSRLE-DYFQ--EFTRYQTPLDATPDPGEDPIVIRAKYF 120 (174)
Q Consensus 68 ilv~NK~Dl~~~~~~~~----~~~l~-~~~~--~~~~~~~~~~a~~~~g~~~~~~~a~~~ 120 (174)
+++.||.|+........ ...+. ++.. .+..+..-++|.+|+|.++..+...++
T Consensus 193 i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 193 IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 67889999766532200 01111 1112 222234556677777766666665554
No 347
>PHA02518 ParA-like protein; Provisional
Probab=80.38 E-value=21 Score=26.46 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=21.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~ 30 (174)
|+|++|.. .......+..+|.+|.++..
T Consensus 81 iiD~p~~~--~~~~~~~l~~aD~viip~~p 108 (211)
T PHA02518 81 VVDGAPQD--SELARAALRIADMVLIPVQP 108 (211)
T ss_pred EEeCCCCc--cHHHHHHHHHCCEEEEEeCC
Confidence 57998864 34455667799999999877
No 348
>KOG0464|consensus
Probab=79.19 E-value=0.47 Score=40.22 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=46.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.||.|+--||---..|.+--++++.|+|.|.= .+ ...+..|++.-. -++|-+.+.||+|.....
T Consensus 106 lidtpghvdf~leverclrvldgavav~dasag---------ve--~qtltvwrqadk----~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 106 LIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG---------VE--AQTLTVWRQADK----FKIPAHCFINKMDKLAAN 170 (753)
T ss_pred eecCCCcceEEEEHHHHHHHhcCeEEEEeccCC---------cc--cceeeeehhccc----cCCchhhhhhhhhhhhhh
Confidence 369999999998888999999999999999521 11 122344444322 267888899999987543
No 349
>KOG0467|consensus
Probab=79.03 E-value=3.2 Score=37.77 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=44.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.|..|+--|.+.-..--+=+|+++..+|+ ..--... ... +++..|..+...+|+.||+|..--+
T Consensus 76 lidspghvdf~sevssas~l~d~alvlvdv----------vegv~~q-t~~----vlrq~~~~~~~~~lvinkidrl~~e 140 (887)
T KOG0467|consen 76 LIDSPGHVDFSSEVSSASRLSDGALVLVDV----------VEGVCSQ-TYA----VLRQAWIEGLKPILVINKIDRLITE 140 (887)
T ss_pred EecCCCccchhhhhhhhhhhcCCcEEEEee----------ccccchh-HHH----HHHHHHHccCceEEEEehhhhHHHH
Confidence 358899988888877777888999999998 3222211 112 2333345567788999999965443
Q ss_pred H
Q psy12099 81 V 81 (174)
Q Consensus 81 ~ 81 (174)
+
T Consensus 141 l 141 (887)
T KOG0467|consen 141 L 141 (887)
T ss_pred H
Confidence 3
No 350
>KOG0460|consensus
Probab=78.26 E-value=6.5 Score=32.71 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=43.8
Q ss_pred eCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh-hHH-
Q psy12099 3 DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL-AEK- 80 (174)
Q Consensus 3 D~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~-~~~- 80 (174)
|..|+.-|-+-...=-..-|++|+|+..++= . +-...+.+--. +... -..++++.||.|+. ++.
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~---MPQTrEHlLLA-rQVG--V~~ivvfiNKvD~V~d~e~ 188 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDG--------P---MPQTREHLLLA-RQVG--VKHIVVFINKVDLVDDPEM 188 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCC--------C---CcchHHHHHHH-HHcC--CceEEEEEecccccCCHHH
Confidence 6677665543322212235899999988421 1 22222222221 1112 24788999999998 322
Q ss_pred HhccccchhhhhhccCC
Q psy12099 81 VKAGKSRLEDYFQEFTR 97 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~ 97 (174)
++-.+..+++.+.+|+.
T Consensus 189 leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 189 LELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 22114577788887764
No 351
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=77.56 E-value=10 Score=25.32 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=36.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK 73 (174)
|.|+++..... ....+..++.+|++++. +..++.......+.+.+........+.+++|+
T Consensus 47 IiDtpp~~~~~--~~~~l~~aD~vlvvv~~-----------~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 47 VVDLGRSLDEV--SLAALDQADRVFLVTQQ-----------DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEeCCCCcCHH--HHHHHHHcCeEEEEecC-----------ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 46887754332 23456788999998877 55666666565555443322114567777775
No 352
>KOG0465|consensus
Probab=77.53 E-value=2.6 Score=37.36 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=37.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
|.||+|+--|----..-++--|++|.|++.. ....+ .+...|+++.+ -++|.+.+.||+|....
T Consensus 108 iIDTPGHvDFT~EVeRALrVlDGaVlvl~aV---------~GVqs--Qt~tV~rQ~~r----y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 108 IIDTPGHVDFTFEVERALRVLDGAVLVLDAV---------AGVES--QTETVWRQMKR----YNVPRICFINKMDRMGA 171 (721)
T ss_pred EecCCCceeEEEEehhhhhhccCeEEEEEcc---------cceeh--hhHHHHHHHHh----cCCCeEEEEehhhhcCC
Confidence 4688888433222222334557777777652 22222 33445566543 37899999999998753
No 353
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=77.25 E-value=24 Score=29.62 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=30.7
Q ss_pred CeeCCCCchhhhhHhhhhc-----CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQCFN-----DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~-----~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D 75 (174)
+||+.|-..-+-....|+. ..|.+|++.+- +|.+.-.++-..++. .+.|+.+|-+|+|
T Consensus 90 lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--------------rf~~ndv~La~~i~~---~gK~fyfVRTKvD 152 (376)
T PF05049_consen 90 LWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE--------------RFTENDVQLAKEIQR---MGKKFYFVRTKVD 152 (376)
T ss_dssp EEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS--------------S--HHHHHHHHHHHH---TT-EEEEEE--HH
T ss_pred EEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC--------------CCchhhHHHHHHHHH---cCCcEEEEEeccc
Confidence 5999997665555566655 56777766543 444443333333333 3679999999999
Q ss_pred h
Q psy12099 76 L 76 (174)
Q Consensus 76 l 76 (174)
.
T Consensus 153 ~ 153 (376)
T PF05049_consen 153 S 153 (376)
T ss_dssp H
T ss_pred c
Confidence 6
No 354
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=76.51 E-value=11 Score=29.57 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=35.2
Q ss_pred CeeCCCCchhh--h-----h---Hhhhhc--CCCEEEEEEeCCCccccccCCCCcchHH--HHHHHHHHHHcCCCCCCCc
Q psy12099 1 MFDVGGQRDER--R-----K---WIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLR--ESLDLFKSIWNNRWLRTIS 66 (174)
Q Consensus 1 iwD~~Gq~~~r--~-----~---w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 66 (174)
+|||+|-.... . . -..|.. ..++++||..+. ..+.+.. ..+..+.+....... .+
T Consensus 83 vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD---------~~r~~~~d~~llk~I~e~fG~~i~--~~ 151 (249)
T cd01853 83 IIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLD---------MYRRDYLDLPLLRAITDSFGPSIW--RN 151 (249)
T ss_pred EEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCC---------CCCCCHHHHHHHHHHHHHhChhhH--hC
Confidence 58898875431 0 0 112443 578888887662 1111122 234444444332211 36
Q ss_pred EEEEEeCCchh
Q psy12099 67 VILFLNKQDLL 77 (174)
Q Consensus 67 iilv~NK~Dl~ 77 (174)
+++|+||+|..
T Consensus 152 ~ivV~T~~d~~ 162 (249)
T cd01853 152 AIVVLTHAASS 162 (249)
T ss_pred EEEEEeCCccC
Confidence 89999999975
No 355
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=74.99 E-value=7.9 Score=32.26 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=46.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|+|.+ .-.......+..+++.|+.|++. +.-++...++.+..+.+. .....+..+++||.+..
T Consensus 222 V~Dlp--~~~~~~t~~vL~~Sd~iviv~e~-----------sl~slR~ak~lld~l~~~-r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 222 VVDLP--NIWTDWTRQVLSGSDEIVIVAEP-----------SLASLRNAKELLDELKRL-RPNDPKPILVLNRVGVP 284 (366)
T ss_pred EEcCC--CccchHHHHHHhcCCeEEEEecc-----------cHHHHHHHHHHHHHHHHh-CCCCCCceEEeeecCCC
Confidence 35555 22223345678899999999988 778888888888886544 45677888999998864
No 356
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=74.26 E-value=14 Score=26.47 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=38.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|++|.-... ....+..++.+|++++. +..++.....+++.+.. . ....+.+++|+.+-.
T Consensus 67 iiD~p~~~~~~--~~~~l~~ad~viiv~~~-----------~~~s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~ 127 (179)
T cd02036 67 LIDSPAGIERG--FITAIAPADEALLVTTP-----------EISSLRDADRVKGLLEA-L--GIKVVGVIVNRVRPD 127 (179)
T ss_pred EEECCCCCcHH--HHHHHHhCCcEEEEeCC-----------CcchHHHHHHHHHHHHH-c--CCceEEEEEeCCccc
Confidence 57888764432 23446788999999877 44555555554444432 1 223577899999864
No 357
>KOG4273|consensus
Probab=73.55 E-value=15 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=26.6
Q ss_pred CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC-cEEEEEeCCchh
Q psy12099 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI-SVILFLNKQDLL 77 (174)
Q Consensus 21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~-~iilv~NK~Dl~ 77 (174)
..+++.|||+ +....+.....|+-. ..+... -++.+|||.|..
T Consensus 79 l~a~vmvfdl----------se~s~l~alqdwl~h----tdinsfdillcignkvdrv 122 (418)
T KOG4273|consen 79 LQAFVMVFDL----------SEKSGLDALQDWLPH----TDINSFDILLCIGNKVDRV 122 (418)
T ss_pred eeeEEEEEec----------cchhhhHHHHhhccc----cccccchhheecccccccc
Confidence 4567888999 667666666555432 222222 345568999975
No 358
>KOG1954|consensus
Probab=71.13 E-value=9.7 Score=32.13 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=33.5
Q ss_pred hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 15 IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 15 ~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
..|-+.||.||++||. ...+-..+-...+..+..+ .-.+-+|+||.|..+.
T Consensus 176 ~WFaeR~D~IiLlfD~----------hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 176 EWFAERVDRIILLFDA----------HKLDISDEFKRVIDALKGH----EDKIRVVLNKADQVDT 226 (532)
T ss_pred HHHHHhccEEEEEech----------hhccccHHHHHHHHHhhCC----cceeEEEeccccccCH
Confidence 4455789999999998 3333334444445554433 3367788999998754
No 359
>KOG0459|consensus
Probab=67.47 E-value=4.7 Score=34.17 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=35.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH----HHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL----DLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~----~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
|.|..|+.+|-.-...=-..||..++|++. ....|+.-. +.-+...-.....-...+++.||+|-
T Consensus 161 iLDApGHk~fv~nmI~GasqAD~~vLvisa-----------r~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 161 ILDAPGHKSFVPNMIGGASQADLAVLVISA-----------RKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 229 (501)
T ss_pred eeccCcccccchhhccccchhhhhhhhhhh-----------hhchhhcccccccchhHHHHHHHhhccceEEEEEEeccC
Confidence 467888887765444444456666777765 121111100 11111111112234578899999997
Q ss_pred hh
Q psy12099 77 LA 78 (174)
Q Consensus 77 ~~ 78 (174)
+.
T Consensus 230 Pt 231 (501)
T KOG0459|consen 230 PT 231 (501)
T ss_pred Cc
Confidence 64
No 360
>KOG0466|consensus
Probab=66.94 E-value=10 Score=31.18 Aligned_cols=61 Identities=23% Similarity=0.120 Sum_probs=36.5
Q ss_pred CcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeec
Q psy12099 65 ISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFT 144 (174)
Q Consensus 65 ~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~t 144 (174)
..++++-||.||..+... + +.+++..+||...- +.. ..+..+
T Consensus 180 khiiilQNKiDli~e~~A-----~-----------------------eq~e~I~kFi~~t~--------ae~--aPiiPi 221 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQA-----L-----------------------EQHEQIQKFIQGTV--------AEG--APIIPI 221 (466)
T ss_pred ceEEEEechhhhhhHHHH-----H-----------------------HHHHHHHHHHhccc--------cCC--Cceeee
Confidence 468999999999876422 1 12344455543211 111 234457
Q ss_pred ccccchhHHHHHHHHHHHH
Q psy12099 145 CAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 145 sA~d~~~i~~~f~~~~~~i 163 (174)
||--.-||+.+.+.+.+.|
T Consensus 222 sAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 222 SAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhccChHHHHHHHHhcC
Confidence 7777778887777776654
No 361
>PRK09602 translation-associated GTPase; Reviewed
Probab=66.49 E-value=9.6 Score=32.12 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=23.9
Q ss_pred CCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCC
Q psy12099 63 RTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGE 110 (174)
Q Consensus 63 ~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~ 110 (174)
...|+++++||.|+....-. ...+.++ + .....+.||+.+.+.
T Consensus 216 t~KPvI~VlNK~D~~~~~~~--l~~i~~~-~--~~~vvpISA~~e~~l 258 (396)
T PRK09602 216 ISKPMVIAANKADLPPAEEN--IERLKEE-K--YYIVVPTSAEAELAL 258 (396)
T ss_pred cCCCEEEEEEchhcccchHH--HHHHHhc-C--CCcEEEEcchhhhhH
Confidence 45899999999997532110 1122233 1 122456777666553
No 362
>KOG2484|consensus
Probab=64.47 E-value=13 Score=31.48 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=29.1
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcc--hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQN--RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~--~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+.+|+||.|.|. -++. |-.+.-++ +++. ..+.-.|||+||.||.-
T Consensus 145 e~sDVVleVlDA----------RDPlgtR~~~vE~~---V~~~--~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 145 EASDVVLEVLDA----------RDPLGTRCPEVEEA---VLQA--HGNKKLILVLNKIDLVP 191 (435)
T ss_pred hhhheEEEeeec----------cCCCCCCChhHHHH---HHhc--cCCceEEEEeehhccCC
Confidence 468999999999 3432 22222222 2222 23578999999999964
No 363
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=61.26 E-value=11 Score=27.28 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=12.2
Q ss_pred CCCEEEEEEeCCCccc
Q psy12099 20 DVTAIIFVTACSSYNM 35 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~ 35 (174)
.++++++++|.+.+.+
T Consensus 118 ~~d~vv~vvDa~~~~~ 133 (158)
T cd03112 118 LLDGVITLVDAKHANQ 133 (158)
T ss_pred eeccEEEEEEhhHhHH
Confidence 5788999999965543
No 364
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=61.03 E-value=16 Score=26.74 Aligned_cols=45 Identities=22% Similarity=0.433 Sum_probs=26.6
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
..+.+|.|+|...+ .........+...+... . +|++||.|+..+.
T Consensus 113 ~~~~iI~vVDa~~~----------~~~~~~~~~~~~Qi~~A-----D-vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 113 RLDSIITVVDATNF----------DELENIPELLREQIAFA-----D-VIVLNKIDLVSDE 157 (178)
T ss_dssp SESEEEEEEEGTTH----------GGHTTHCHHHHHHHCT------S-EEEEE-GGGHHHH
T ss_pred cccceeEEeccccc----------cccccchhhhhhcchhc-----C-EEEEeccccCChh
Confidence 46889999999544 22233334444444332 2 5778999998764
No 365
>KOG2485|consensus
Probab=60.93 E-value=24 Score=28.93 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=30.2
Q ss_pred hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.-...+|+||=|-|.- .++ +++| +.|++.+. ..|=+||+||+||...
T Consensus 42 ~~l~~~D~iiEvrDaR---iPL---ssrn------~~~~~~~~-----~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 42 NRLPLVDCIIEVRDAR---IPL---SSRN------ELFQDFLP-----PKPRIIVLNKMDLADP 88 (335)
T ss_pred hhcccccEEEEeeccc---cCC---cccc------HHHHHhcC-----CCceEEEEecccccCc
Confidence 3456789999998871 000 2222 34445432 5688999999999874
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=60.79 E-value=39 Score=24.31 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=31.9
Q ss_pred CeeCCCCchhhhhH----hhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQRDERRKW----IQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~~~r~~w----~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
|.|++|.-....-+ ..+. ...+.+++|++. ..... ..+......+.. + ...+++||.
T Consensus 87 iiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~----------~~~~~---~~~~~~~~~~~~---~-~~~viltk~ 149 (173)
T cd03115 87 IVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDA----------MTGQD---AVNQAKAFNEAL---G-ITGVILTKL 149 (173)
T ss_pred EEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEEC----------CCChH---HHHHHHHHHhhC---C-CCEEEEECC
Confidence 46888864322111 1111 247899999998 33322 223333333221 1 356777999
Q ss_pred chhh
Q psy12099 75 DLLA 78 (174)
Q Consensus 75 Dl~~ 78 (174)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9654
No 367
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.49 E-value=17 Score=35.06 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=41.6
Q ss_pred eeCCCC--------chhhhhHhhhh---------cCCCEEEEEEeCCCccccccCCCCcchHHH---HHHHHHHHHcCCC
Q psy12099 2 FDVGGQ--------RDERRKWIQCF---------NDVTAIIFVTACSSYNMVLREDPTQNRLRE---SLDLFKSIWNNRW 61 (174)
Q Consensus 2 wD~~Gq--------~~~r~~w~~y~---------~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~---~~~~~~~i~~~~~ 61 (174)
.||+|- +.-++.|.+++ +..+|||.+.|+++-- ..+...+... ...-+.++... .
T Consensus 179 IDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~----~~~~~~~~~~~~~LR~RL~El~~t-L 253 (1188)
T COG3523 179 IDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLL----TADPAEREALARTLRARLQELRET-L 253 (1188)
T ss_pred EcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHc----CCCHHHHHHHHHHHHHHHHHHHHh-h
Confidence 577774 23456788652 3789999999995321 1111222111 22224443322 2
Q ss_pred CCCCcEEEEEeCCchhh
Q psy12099 62 LRTISVILFLNKQDLLA 78 (174)
Q Consensus 62 ~~~~~iilv~NK~Dl~~ 78 (174)
....|+.|++||.|+..
T Consensus 254 ~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 254 HARLPVYLVLTKADLLP 270 (1188)
T ss_pred ccCCceEEEEecccccc
Confidence 34689999999999853
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.31 E-value=26 Score=27.83 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=32.7
Q ss_pred CeeCCCCchhhhhHh-------hhh-----cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099 1 MFDVGGQRDERRKWI-------QCF-----NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI 68 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~-------~y~-----~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii 68 (174)
|.||+|.-.....+. ... ..++.+++|+|.+ +..+.+..+ ..|.+.+ .+--
T Consensus 159 iIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---------~~~~~~~~~-~~f~~~~-------~~~g 221 (272)
T TIGR00064 159 LIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---------TGQNALEQA-KVFNEAV-------GLTG 221 (272)
T ss_pred EEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---------CCHHHHHHH-HHHHhhC-------CCCE
Confidence 468998754332221 111 2378899999993 333333333 2222211 1456
Q ss_pred EEEeCCchh
Q psy12099 69 LFLNKQDLL 77 (174)
Q Consensus 69 lv~NK~Dl~ 77 (174)
+++||.|..
T Consensus 222 ~IlTKlDe~ 230 (272)
T TIGR00064 222 IILTKLDGT 230 (272)
T ss_pred EEEEccCCC
Confidence 889999963
No 369
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=56.31 E-value=36 Score=25.61 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=36.1
Q ss_pred CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHH----cCCCCCCCcEEEEEe
Q psy12099 22 TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW----NNRWLRTISVILFLN 72 (174)
Q Consensus 22 ~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~----~~~~~~~~~iilv~N 72 (174)
-++++++|+|.+- +.+|-.++|++..+.....++ +......+-++.+++
T Consensus 4 ea~vi~lD~S~sM--~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag 56 (187)
T cd01452 4 EATMICIDNSEYM--RNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAG 56 (187)
T ss_pred eEEEEEEECCHHH--HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecC
Confidence 4789999999874 567788899999888877663 333334566777777
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.64 E-value=30 Score=29.57 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=34.0
Q ss_pred CeeCCCCchhhhhHhh----hh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQRDERRKWIQ----CF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~----y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
|.||+|.-.....+.. +. ...+-+++|+|. +......+....|.+.+ .+--+++||.
T Consensus 187 iIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda----------~~Gq~a~~~a~~F~~~~-------~~~g~IlTKl 249 (429)
T TIGR01425 187 IVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDG----------SIGQAAEAQAKAFKDSV-------DVGSVIITKL 249 (429)
T ss_pred EEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecc----------ccChhHHHHHHHHHhcc-------CCcEEEEECc
Confidence 4799997554333322 11 246778999998 33322233334444321 2456778999
Q ss_pred chh
Q psy12099 75 DLL 77 (174)
Q Consensus 75 Dl~ 77 (174)
|..
T Consensus 250 D~~ 252 (429)
T TIGR01425 250 DGH 252 (429)
T ss_pred cCC
Confidence 974
No 371
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=55.04 E-value=44 Score=21.64 Aligned_cols=41 Identities=7% Similarity=0.023 Sum_probs=26.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFK 54 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~ 54 (174)
|.|+++...... ...+..++.+|.+++. +..++.....+.+
T Consensus 44 iiD~p~~~~~~~--~~~l~~ad~viv~~~~-----------~~~s~~~~~~~~~ 84 (104)
T cd02042 44 IIDTPPSLGLLT--RNALAAADLVLIPVQP-----------SPLDLDGLEKLLE 84 (104)
T ss_pred EEeCcCCCCHHH--HHHHHHCCEEEEeccC-----------CHHHHHHHHHHHH
Confidence 468877653322 2566788999988877 5556666555544
No 372
>KOG0448|consensus
Probab=54.20 E-value=95 Score=28.33 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=34.5
Q ss_pred hhH-hhhhcCCCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 12 RKW-IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 12 ~~w-~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.-| ..+..++|.+|||+.. .+.+.. .+..|..+.+. +..|.|+-||.|....
T Consensus 223 tswid~~cldaDVfVlV~Na------------Entlt~sek~Ff~~vs~~----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 223 TSWIDSFCLDADVFVLVVNA------------ENTLTLSEKQFFHKVSEE----KPNIFILNNKWDASAS 276 (749)
T ss_pred hHHHHHHhhcCCeEEEEecC------------ccHhHHHHHHHHHHhhcc----CCcEEEEechhhhhcc
Confidence 344 4567899999999966 344433 35556665432 5677788899898654
No 373
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=54.17 E-value=28 Score=28.79 Aligned_cols=89 Identities=12% Similarity=-0.016 Sum_probs=51.0
Q ss_pred CcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCC-Ccceee-e
Q psy12099 65 ISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDG-KHYCYP-H 142 (174)
Q Consensus 65 ~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~-~~~~~~-~ 142 (174)
+|.+.+.||.|+..... -..+.+.. ...+.||++|-|.++..+...+.+ .+.+-..++ .....+ -
T Consensus 240 ~p~l~v~NKiD~~~~e~---~~~l~~~~-----~~v~isa~~~~nld~L~e~i~~~L-----~liRVYtK~~g~~pd~~~ 306 (365)
T COG1163 240 KPALYVVNKIDLPGLEE---LERLARKP-----NSVPISAKKGINLDELKERIWDVL-----GLIRVYTKPPGEEPDFDE 306 (365)
T ss_pred eeeEEEEecccccCHHH---HHHHHhcc-----ceEEEecccCCCHHHHHHHHHHhh-----CeEEEEecCCCCCCCCCC
Confidence 58899999999987321 12232222 346788888888765555544431 111111111 111222 2
Q ss_pred ecccccchhHHHHHHHHHHHHHHh
Q psy12099 143 FTCAVDTENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 143 ~tsA~d~~~i~~~f~~~~~~i~~~ 166 (174)
..--+.|..|.++-+.|...+.++
T Consensus 307 PlIlr~GsTV~Dvc~~IH~~l~~~ 330 (365)
T COG1163 307 PLILRRGSTVGDVCRKIHRDLVEN 330 (365)
T ss_pred CeEEeCCCcHHHHHHHHHHHHHHh
Confidence 344668888888888888887754
No 374
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=53.70 E-value=69 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=29.6
Q ss_pred CCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCC--CCCCCCCCCCC
Q psy12099 64 TISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQT--PLDATPDPGED 111 (174)
Q Consensus 64 ~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~~~g~~ 111 (174)
++|++++.||.|.-.+.. ...+++++.+.+-... ..=|..|+|..
T Consensus 372 GvPvVVAINKFd~DTe~E---i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai 418 (557)
T PRK13505 372 GVPVVVAINKFVTDTDAE---IAALKELCEELGVEVALSEVWAKGGEGGV 418 (557)
T ss_pred CCCEEEEEeCCCCCCHHH---HHHHHHHHHHcCCCEEEecccccCCcchH
Confidence 689999999999865522 2467778877653322 22267777744
No 375
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=52.02 E-value=44 Score=25.23 Aligned_cols=52 Identities=10% Similarity=0.255 Sum_probs=34.7
Q ss_pred CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC----CCCCCCcEEEEEeC
Q psy12099 22 TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN----RWLRTISVILFLNK 73 (174)
Q Consensus 22 ~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~----~~~~~~~iilv~NK 73 (174)
.+++|++|+|..=....+...+.+|+.++..+..+++. .....+-+++++++
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~ 57 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTE 57 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEccc
Confidence 57999999985322110111368999999999998885 23345677777776
No 376
>PRK15494 era GTPase Era; Provisional
Probab=51.63 E-value=11 Score=30.94 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=21.4
Q ss_pred eeeeecccccchhHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i 163 (174)
..++.+||+++.|++++|+++.+.+
T Consensus 191 ~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 191 SLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred cEEEEEeccCccCHHHHHHHHHHhC
Confidence 4577999999999999999987643
No 377
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=51.25 E-value=23 Score=29.06 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=26.5
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
..+++|.|+|.+.|.. .+....+.+..-+.. . =+|++||.|+..+.
T Consensus 116 ~ld~vvtvVDa~~~~~---------~~~~~~~~~~~Qia~---A---D~ivlNK~Dlv~~~ 161 (323)
T COG0523 116 RLDGVVTVVDAAHFLE---------GLDAIAELAEDQLAF---A---DVIVLNKTDLVDAE 161 (323)
T ss_pred eeceEEEEEeHHHhhh---------hHHHHHHHHHHHHHh---C---cEEEEecccCCCHH
Confidence 4588999999954421 122123333333322 1 25789999998643
No 378
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=49.72 E-value=58 Score=26.02 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=20.4
Q ss_pred CeeCCCCch----hhhhH---hhhhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQRD----ERRKW---IQCFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq~~----~r~~w---~~y~~~~~~ii~v~d~s~ 32 (174)
+.|++|--+ -+.+. ....+.++++|+|+|..+
T Consensus 66 lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 66 FVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 468888321 12222 334578999999999854
No 379
>PTZ00258 GTP-binding protein; Provisional
Probab=49.27 E-value=50 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=21.5
Q ss_pred CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCcc
Q psy12099 1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYN 34 (174)
Q Consensus 1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~ 34 (174)
+.||+|--. .........+.++++|+|+|..+-+
T Consensus 89 lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~ 129 (390)
T PTZ00258 89 ITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDE 129 (390)
T ss_pred EEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCC
Confidence 358888421 1112233467899999999985433
No 380
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=49.25 E-value=1.8e+02 Score=25.30 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCCEEEEEE-eCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 20 DVTAIIFVT-ACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 20 ~~~~ii~v~-d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
.++..|+|. |-|--+- +..+....-..+++.+.+ .+.|+++++||+|-
T Consensus 144 hstIgivVtTDgsi~dI-----~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp 192 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDI-----PREDYVEAEERVIEELKE----LNKPFIILLNSTHP 192 (492)
T ss_pred cCcEEEEEEcCCCcccc-----ccccchHHHHHHHHHHHh----cCCCEEEEEECcCC
Confidence 677777777 5421110 112222233444555432 47899999999993
No 381
>KOG1534|consensus
Probab=48.71 E-value=1.1e+02 Score=24.09 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=68.8
Q ss_pred CeeCCCC-chh------hhhHhhhhc-C-CCEEEEEEeCCCccccccCCCCcch-HHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQ-RDE------RRKWIQCFN-D-VTAIIFVTACSSYNMVLREDPTQNR-LRESLDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq-~~~------r~~w~~y~~-~-~~~ii~v~d~s~~~~~~~e~~~~~~-~~~~~~~~~~i~~~~~~~~~~iilv 70 (174)
|+|..|| |-| +.+-.|.-+ + --|++|+.|. |.+ .+.+. +...+.-+..++. -.+|-|=+
T Consensus 102 ifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vyllds----qf~---vD~~KfiSG~lsAlsAMi~----lE~P~INv 170 (273)
T KOG1534|consen 102 IFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDS----QFL---VDSTKFISGCLSALSAMIS----LEVPHINV 170 (273)
T ss_pred EEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEecc----chh---hhHHHHHHHHHHHHHHHHH----hcCcchhh
Confidence 5899999 333 223333222 1 2356677765 111 12222 2234444444443 25788889
Q ss_pred EeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhc---CCCCCcceeeeecccc
Q psy12099 71 LNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTA---SGDGKHYCYPHFTCAV 147 (174)
Q Consensus 71 ~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~---~~~~~~~~~~~~tsA~ 147 (174)
+.|+||...+-+ ..++.+...-.......+ ..+.+ . .+|..+++. ......-+.++....-
T Consensus 171 lsKMDLlk~~~k---~~l~~Fl~~d~~~l~~~~-~~~~~-------s-----~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~ 234 (273)
T KOG1534|consen 171 LSKMDLLKDKNK---KELERFLNPDEYLLLEDS-EINLR-------S-----PKFKKLTKCIAQLVDDYSMVNFLPLDSS 234 (273)
T ss_pred hhHHHHhhhhhH---HHHHHhcCCchhhhhccc-ccccc-------c-----HHHHHHHHHHHHHhccccceeeeecCCC
Confidence 999999987432 345444331111001000 00000 0 122222221 1123344667777778
Q ss_pred cchhHHHHHHHHHHHHHH
Q psy12099 148 DTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 148 d~~~i~~~f~~~~~~i~~ 165 (174)
+.+.|+.++..|-..|+.
T Consensus 235 ~eeSi~~iL~~ID~aiQy 252 (273)
T KOG1534|consen 235 DEESINIILSYIDDAIQY 252 (273)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 889999999988887763
No 382
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=48.05 E-value=13 Score=27.67 Aligned_cols=28 Identities=0% Similarity=-0.267 Sum_probs=19.8
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHH
Q psy12099 95 FTRYQTPLDATPDPGEDPIVIRAKYFIR 122 (174)
Q Consensus 95 ~~~~~~~~~a~~~~g~~~~~~~a~~~i~ 122 (174)
++....++||++|.|.++.++++.+-+.
T Consensus 140 ~~~~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 140 NGMTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3444567899999998777777655443
No 383
>KOG0463|consensus
Probab=47.77 E-value=16 Score=30.97 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=16.3
Q ss_pred hHhhhhcCCCEEEEEEeCCCccccc
Q psy12099 13 KWIQCFNDVTAIIFVTACSSYNMVL 37 (174)
Q Consensus 13 ~w~~y~~~~~~ii~v~d~s~~~~~~ 37 (174)
-|....+++.-+|.++|++...+++
T Consensus 209 dWvkIce~saKviTFIDLAGHEkYL 233 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGHEKYL 233 (641)
T ss_pred cceeeccccceeEEEEeccchhhhh
Confidence 3666667777777777776655443
No 384
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=44.89 E-value=76 Score=21.23 Aligned_cols=47 Identities=13% Similarity=0.001 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHH
Q psy12099 115 IRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRD 161 (174)
Q Consensus 115 ~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~ 161 (174)
..+..|+...-....+....-...+++|..+|-+.+.++.+-+++.+
T Consensus 47 ~Dv~~Fi~~l~~~~~~~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~ 93 (98)
T PF02829_consen 47 RDVDKFIEKLEKSKAKPLSSLTGGVHYHTIEAPDEEDLDKIEEALKK 93 (98)
T ss_dssp HHHHHHHHHHHH--S--STTGGGGEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcchHHhcCCEeeEEEEECCHHHHHHHHHHHHH
Confidence 44555555433332222112334689999999999887777766654
No 385
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.75 E-value=51 Score=28.23 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=19.2
Q ss_pred CeeCCCCchhhhhHh------hhhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWI------QCFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~------~y~~~~~~ii~v~d~ 30 (174)
|.||+|.-....-.. .-...++.+++|+|.
T Consensus 180 IIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda 215 (437)
T PRK00771 180 IVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDA 215 (437)
T ss_pred EEECCCcccchHHHHHHHHHHHHHhcccceeEEEec
Confidence 579999765432211 112367889999998
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.34 E-value=73 Score=26.73 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=39.4
Q ss_pred CeeCCCCchhhhhH---hhhhc---CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC-cEEEEEeC
Q psy12099 1 MFDVGGQRDERRKW---IQCFN---DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI-SVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w---~~y~~---~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~-~iilv~NK 73 (174)
+.||+|-....... ...+. ...-.++|++.+ +..+.+.+...-|......+...-. +--++++|
T Consensus 220 LIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAt---------s~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 220 LIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNAT---------SHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred EEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCc---------cChHHHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence 47999976443322 12222 234468888884 4566667777777776544332211 23467799
Q ss_pred Cchh
Q psy12099 74 QDLL 77 (174)
Q Consensus 74 ~Dl~ 77 (174)
.|-.
T Consensus 291 lDEt 294 (374)
T PRK14722 291 LDEA 294 (374)
T ss_pred cccC
Confidence 9964
No 387
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=43.81 E-value=17 Score=28.57 Aligned_cols=24 Identities=8% Similarity=-0.197 Sum_probs=20.8
Q ss_pred eeeecccccchhHHHHHHHHHHHH
Q psy12099 140 YPHFTCAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 140 ~~~~tsA~d~~~i~~~f~~~~~~i 163 (174)
.++.+||+++.|++++++.+.+.+
T Consensus 140 ~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 140 DIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred ceEEEecCCCCCHHHHHHHHHHhC
Confidence 567899999999999999987654
No 388
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=42.02 E-value=1.1e+02 Score=23.22 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=35.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.-.. .....+..++.+|++++. +..++.+.....+. ..... ...+.++.|+.+-.
T Consensus 113 IiD~p~~~~~--~~~~~l~~ad~vliv~~~-----------~~~s~~~~~~~~~~-~~~~~--~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 113 LIDAPAGLER--DAVTALAAADELLLVVNP-----------EISSITDALKTKIV-AEKLG--TAILGVVLNRVTRD 173 (251)
T ss_pred EEeCCCccCH--HHHHHHHhCCeEEEEECC-----------CCchHHHHHHHHHH-HHhcC--CceEEEEEECCCch
Confidence 4688765432 223345678999998877 34445555444332 23221 22456899999864
No 389
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=41.36 E-value=82 Score=24.29 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=37.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN--RWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~--~~~~~~~iilv~NK~D 75 (174)
|.|++|... ......+..+|.+|..+.. +.-.+..+...+..+... ....+.|..++.|.++
T Consensus 88 iID~pp~~~--~~~~~al~~aD~vliP~~p-----------s~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 88 LADTHGGSS--ELNNTIIASSNLLLIPTML-----------TPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred EEeCCCCcc--HHHHHHHHHCCEEEEeccC-----------cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468888664 3334456778888877666 344454554554444321 1223568889999886
No 390
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=41.21 E-value=1e+02 Score=23.45 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=36.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
|.|+++.-.. ........+|.+|+++.. +..++..+...++.+.+. . ..++.++.|+.+-
T Consensus 116 iiD~p~~~~~--~~~~~l~~aD~viiv~~~-----------~~~s~~~~~~~~~~l~~~-~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 116 IIDCPAGIES--GFRNAVAPADEAIVVTTP-----------EVSAVRDADRVIGLLEAK-G--IEKIHLIVNRLRP 175 (261)
T ss_pred EEeCCCCcCH--HHHHHHHhCCeEEEEcCC-----------CcHHHHHHHHHHHHHHHc-C--CCceEEEEeCcCc
Confidence 4688765332 233445678888888876 455565555544444322 2 2367788899875
No 391
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=40.96 E-value=28 Score=21.25 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=17.0
Q ss_pred cccccchhHHHHHHHHHHHHHHhh
Q psy12099 144 TCAVDTENIRRVFNDCRDIIQRMH 167 (174)
Q Consensus 144 tsA~d~~~i~~~f~~~~~~i~~~~ 167 (174)
-+|++|.||+++.+.-.+.-++..
T Consensus 43 etAknGgNvKEvme~~lr~~l~~~ 66 (71)
T PF07764_consen 43 ETAKNGGNVKEVMEQALREKLKSV 66 (71)
T ss_dssp HHHHSSS-HHHHHHHHHHHHHHHH
T ss_pred eecccCCCHHHHHHHHHHHHHHHh
Confidence 469999999999877665555443
No 392
>KOG0463|consensus
Probab=40.38 E-value=79 Score=26.94 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHH
Q psy12099 41 PTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120 (174)
Q Consensus 41 ~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~ 120 (174)
...|-+++.+..+..++.++.-++.|++ |-++-|..-.... .+-+..||-| -.|-.||++.+
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~Pvl-Vrs~DDVv~~A~N---F~Ser~CPIF-----QvSNVtG~NL~--------- 347 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVL-VRSMDDVVHAAVN---FPSERVCPIF-----QVSNVTGTNLP--------- 347 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEE-EecccceEEeecc---CccccccceE-----EeccccCCChH---------
Confidence 4667888888888888888877777765 4677776543221 2222333433 35666777754
Q ss_pred HHHHHHHhhh
Q psy12099 121 IRDEFLRIST 130 (174)
Q Consensus 121 i~~~f~~~~~ 130 (174)
+.+.|.++..
T Consensus 348 LLkmFLNlls 357 (641)
T KOG0463|consen 348 LLKMFLNLLS 357 (641)
T ss_pred HHHHHHhhcC
Confidence 5667777643
No 393
>CHL00175 minD septum-site determining protein; Validated
Probab=39.83 E-value=99 Score=24.20 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=36.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
|.|+++.-. ......+..++.+|+|++. +..++..+....+.+... . ...+.++.|+.+-
T Consensus 131 IiDtpp~~~--~~~~~~l~~aD~viiV~~p-----------~~~si~~~~~~~~~l~~~-~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 131 LIDCPAGID--VGFINAIAPAQEAIVVTTP-----------EITAIRDADRVAGLLEAN-G--IYNVKLLVNRVRP 190 (281)
T ss_pred EEeCCCCCC--HHHHHHHHhcCeeEEEcCC-----------ChHHHHHHHHHHHHHHHc-C--CCceEEEEeccCh
Confidence 468876532 2334445678888888876 556666655555444332 2 1346678899874
No 394
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=39.69 E-value=55 Score=23.65 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=39.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.-... +...+..++.+|.+++. +..++.....+.+.+... ...-..+.++.||.+.-
T Consensus 99 iiD~~~~~~~~--~~~~l~~ad~viv~~~~-----------~~~~i~~~~~~~~~l~~~-~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 99 IIDTPPGLSDP--VRNALAAADYVIVPIEP-----------DPSSIEGAERLIELLKRL-GKKLKIIGVVINRVDPG 161 (195)
T ss_dssp EEEECSSSSHH--HHHHHHTSSEEEEEEES-----------SHHHHHHHHHHHHHHHHH-THTEEEEEEEEEEETSC
T ss_pred eecccccccHH--HHHHHHhCceeeeecCC-----------cHHHHHHHHHHHHHHHHh-ccccceEEEEEeeeCCC
Confidence 45777654333 55567799999999988 445566665555544322 11123568889999764
No 395
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=39.64 E-value=75 Score=25.90 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=22.8
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
..+.+++|+|.+ +..+.+..+.. |...+ .+--+++||.|.
T Consensus 232 ~p~~~~LVl~a~---------~g~~~~~~a~~-f~~~~-------~~~giIlTKlD~ 271 (318)
T PRK10416 232 APHEVLLVLDAT---------TGQNALSQAKA-FHEAV-------GLTGIILTKLDG 271 (318)
T ss_pred CCceEEEEEECC---------CChHHHHHHHH-HHhhC-------CCCEEEEECCCC
Confidence 467789999993 33444443322 22111 244678899994
No 396
>PRK14974 cell division protein FtsY; Provisional
Probab=39.59 E-value=66 Score=26.51 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=8.2
Q ss_pred CCCEEEEEEeC
Q psy12099 20 DVTAIIFVTAC 30 (174)
Q Consensus 20 ~~~~ii~v~d~ 30 (174)
+.+.+++|.|.
T Consensus 252 ~pd~~iLVl~a 262 (336)
T PRK14974 252 KPDLVIFVGDA 262 (336)
T ss_pred CCceEEEeecc
Confidence 46777888887
No 397
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=38.70 E-value=1e+02 Score=23.06 Aligned_cols=47 Identities=17% Similarity=0.038 Sum_probs=24.5
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC-cEEEEEeCCchh
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI-SVILFLNKQDLL 77 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~-~iilv~NK~Dl~ 77 (174)
.++.+|.++.. +..++......++.+.......+. ...++.||.+..
T Consensus 141 ~ad~vliv~~p-----------~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 141 KADEIYIVTSG-----------EFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCcEEEEEecc-----------cHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 56777777755 444544443333333221111133 356899999853
No 398
>KOG0469|consensus
Probab=38.08 E-value=23 Score=31.14 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=40.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
+.|..|+--|.+--.--+|-.|+++.|+|+ -+--..+ ....+.+.+.. .+--+|+.||+|.-
T Consensus 102 LIDSPGHVDFSSEVTAALRVTDGALVVVDc----------v~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 102 LIDSPGHVDFSSEVTAALRVTDGALVVVDC----------VSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred eccCCCcccchhhhhheeEeccCcEEEEEc----------cCceEec-hHHHHHHHHHh----hccceEEeehhhHH
Confidence 357888888888777788889999999998 3322211 11233444433 34445778999964
No 399
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=37.72 E-value=22 Score=27.19 Aligned_cols=31 Identities=10% Similarity=-0.098 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy12099 99 QTPLDATPDPGEDPIVIRAKYFIRDEFLRIS 129 (174)
Q Consensus 99 ~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~ 129 (174)
..++||++|.|.++.++.+.+.+...+.+..
T Consensus 167 ~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 167 CFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999888888887777666654
No 400
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=37.24 E-value=1e+02 Score=23.90 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=24.4
Q ss_pred hcCCCEEEEEEeCCCccccccCCCCcchHHH---HHHHHHHHHcCCCCCCCc-EEEEEeCCch
Q psy12099 18 FNDVTAIIFVTACSSYNMVLREDPTQNRLRE---SLDLFKSIWNNRWLRTIS-VILFLNKQDL 76 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~---~~~~~~~i~~~~~~~~~~-iilv~NK~Dl 76 (174)
+..+|.+|.+... +..++.. ..+.++....+ .+.+ ..++.|+.+.
T Consensus 136 l~~aD~vlip~~p-----------~~~~l~~~~~~~~~i~~~~~~---~~l~~~giV~Nr~~~ 184 (267)
T cd02032 136 LNYADYALIVTDN-----------DFDSIFAANRIAAAVREKAKT---YKVRLAGLIANRTDK 184 (267)
T ss_pred hhhcCEEEEEecC-----------CcccHHHHHHHHHHHHHHhhc---cCCceEEEEEeCCCH
Confidence 4567777777655 3333333 34444433221 3444 3478899985
No 401
>KOG1423|consensus
Probab=37.20 E-value=30 Score=28.54 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeee
Q psy12099 99 QTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHF 143 (174)
Q Consensus 99 ~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~ 143 (174)
.+..||++|+| +++.++|+..+ +..++++++-
T Consensus 248 vF~vSaL~G~G----ikdlkqyLmsq---------a~~gpW~y~a 279 (379)
T KOG1423|consen 248 VFMVSALYGEG----IKDLKQYLMSQ---------APPGPWKYPA 279 (379)
T ss_pred EEEEecccccC----HHHHHHHHHhc---------CCCCCCCCCc
Confidence 56788888888 46677776543 5566776654
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=37.01 E-value=89 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=17.5
Q ss_pred CeeCCCCchhhhhH----hhh--hcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERRKW----IQC--FNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~~w----~~y--~~~~~~ii~v~d~ 30 (174)
|.||+|.-...... ..+ .-..+.+++|+|.
T Consensus 187 IIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda 222 (428)
T TIGR00959 187 IVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDA 222 (428)
T ss_pred EEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEec
Confidence 57999953321111 111 2357888999998
No 403
>KOG1249|consensus
Probab=36.40 E-value=34 Score=30.09 Aligned_cols=22 Identities=14% Similarity=-0.050 Sum_probs=16.2
Q ss_pred eeeecccccchhHHHHHHHHHH
Q psy12099 140 YPHFTCAVDTENIRRVFNDCRD 161 (174)
Q Consensus 140 ~~~~tsA~d~~~i~~~f~~~~~ 161 (174)
+.+.++|+.+.+++++...|.+
T Consensus 187 ~~~~~r~ktgyg~eeLI~~lvd 208 (572)
T KOG1249|consen 187 HVDLIRAKTGYGIEELIVMLVD 208 (572)
T ss_pred hhhhhhhhhcccHHHHHHHhhh
Confidence 3456788888888888777664
No 404
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=36.22 E-value=1.2e+02 Score=25.47 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=20.7
Q ss_pred CeeCCCCch----hhhh---HhhhhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQRD----ERRK---WIQCFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq~~----~r~~---w~~y~~~~~~ii~v~d~s~ 32 (174)
+.|++|--. -+.+ .....+.++++|+|+|.+.
T Consensus 70 lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 70 FVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred EEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 358888321 1222 2334578999999999864
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=34.65 E-value=73 Score=22.65 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=17.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~ 30 (174)
|.||+|-.. -+...+..++-+|++..-
T Consensus 96 iIDtaG~~~---~~~~~~~~Ad~~ivv~tp 122 (148)
T cd03114 96 IVETVGVGQ---SEVDIASMADTTVVVMAP 122 (148)
T ss_pred EEECCccCh---hhhhHHHhCCEEEEEECC
Confidence 468888542 224477888888877755
No 406
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=34.33 E-value=1.1e+02 Score=23.65 Aligned_cols=48 Identities=10% Similarity=0.017 Sum_probs=24.1
Q ss_pred hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCch
Q psy12099 18 FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV-ILFLNKQDL 76 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i-ilv~NK~Dl 76 (174)
+..+|.+|.++.. +..++......++.+.......+.++ -++.|+.+.
T Consensus 138 l~~AD~viip~~~-----------~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 138 LQYADYALIVTAN-----------DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred hhhCcEEEEEecC-----------chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 3456666666644 44444444443333321111234554 478899874
No 407
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.65 E-value=1.2e+02 Score=26.23 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=18.8
Q ss_pred CeeCCCCchhhhhHhh------hhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQ------CFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~------y~~~~~~ii~v~d~ 30 (174)
|.||||--....--.. ---+.+-+++|+|.
T Consensus 187 IvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 187 IVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred EEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 5799997544322111 11267889999999
No 408
>PF09005 DUF1897: Domain of unknown function (DUF1897); InterPro: IPR015096 This domain is found in Psi proteins produced by Drosophila, and in various eukaryotic hypothetical proteins. It has no known function. ; PDB: 2BN6_A 2BN5_A.
Probab=33.37 E-value=19 Score=19.78 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=9.1
Q ss_pred CCCCchhhhhHhhhhcC
Q psy12099 4 VGGQRDERRKWIQCFND 20 (174)
Q Consensus 4 ~~Gq~~~r~~w~~y~~~ 20 (174)
.+||.-|..-|..||+.
T Consensus 5 ~~gq~DYSaqW~eYYr~ 21 (38)
T PF09005_consen 5 AGGQPDYSAQWAEYYRQ 21 (38)
T ss_dssp -------CCHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 36888899999999986
No 409
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=32.12 E-value=1.2e+02 Score=18.47 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=31.6
Q ss_pred CeeCCCCchhhhhH-hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRKW-IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w-~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
|.|++|.-.....+ ......++.++.+++. +..++.......+...........++.++.|
T Consensus 38 ivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 38 LIDTPPGLGLLVLLCLLALLAADLVIIVTTP-----------EALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred EEeCCCCccchhhhhhhhhhhCCEEEEecCC-----------chhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 35666554333211 2344578888888877 4445555544433333333334556666554
No 410
>KOG0081|consensus
Probab=31.19 E-value=54 Score=24.36 Aligned_cols=37 Identities=5% Similarity=-0.070 Sum_probs=27.4
Q ss_pred hccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy12099 93 QEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRIS 129 (174)
Q Consensus 93 ~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~ 129 (174)
..|+-+.+++||.||++..+.++.....|-++..+..
T Consensus 152 ~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 152 DKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred HHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999987777777777666665543
No 411
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=30.66 E-value=2e+02 Score=22.37 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=39.7
Q ss_pred hcCCCEEEEEEeCCCccccccCC--CCcchHHHH----------HHHHHHHHcCC--CCCCC----cEEEEEeCCchhhH
Q psy12099 18 FNDVTAIIFVTACSSYNMVLRED--PTQNRLRES----------LDLFKSIWNNR--WLRTI----SVILFLNKQDLLAE 79 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~~~~~e~--~~~~~~~~~----------~~~~~~i~~~~--~~~~~----~iilv~NK~Dl~~~ 79 (174)
...++.+|-|+.++...+++.++ -..+.+.+. .+.+..++.++ .++++ ..++++||.|-.++
T Consensus 124 P~~t~~VI~V~gl~alG~pl~~e~vHR~e~~~~i~~~~~g~~it~~~la~li~~~~G~~K~~~~~~~~i~~lNkaD~~~~ 203 (232)
T TIGR03172 124 PKSSTTVIGVAGISVVGEKLDTDIVHRWPEFLALTGLAPGDTITLALLARLIAHPQGGFKNAPAHARRIWLLNKVDTACE 203 (232)
T ss_pred CCCCCEEEEEeCHHHcCCcCChhhccCHHHHHHHHCCCCCCccCHHHHHHHHhCccccccCCCCCccEEEEEeCCCCHHH
Confidence 45788999999999888888642 233333321 12234445443 23444 48999999998765
Q ss_pred H
Q psy12099 80 K 80 (174)
Q Consensus 80 ~ 80 (174)
.
T Consensus 204 ~ 204 (232)
T TIGR03172 204 F 204 (232)
T ss_pred H
Confidence 4
No 412
>PRK10867 signal recognition particle protein; Provisional
Probab=29.56 E-value=1.3e+02 Score=25.84 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=17.0
Q ss_pred CeeCCCCchhhhhH----hhh--hcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERRKW----IQC--FNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~~w----~~y--~~~~~~ii~v~d~ 30 (174)
|.||+|.-...... ..+ .-..+.+++|+|.
T Consensus 188 IIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda 223 (433)
T PRK10867 188 IVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDA 223 (433)
T ss_pred EEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEec
Confidence 57999954321111 111 1256778999998
No 413
>PRK00089 era GTPase Era; Reviewed
Probab=29.52 E-value=44 Score=26.43 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=21.7
Q ss_pred eeeeecccccchhHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i 163 (174)
..++.+||+++.|+.++++.+.+.+
T Consensus 146 ~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 146 AEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhC
Confidence 4577899999999999999988765
No 414
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=29.35 E-value=1.5e+02 Score=22.18 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=16.2
Q ss_pred CeeCCCCchhhh----hHhhhhc--CCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERR----KWIQCFN--DVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~----~w~~y~~--~~~~ii~v~d~ 30 (174)
+.||+|...... .+..+.+ ..+-+++|.|.
T Consensus 88 lIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa 123 (196)
T PF00448_consen 88 LIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSA 123 (196)
T ss_dssp EEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEG
T ss_pred EEecCCcchhhHHHHHHHHHHhhhcCCccceEEEec
Confidence 468888644321 1222222 56778888888
No 415
>KOG2743|consensus
Probab=28.62 E-value=1e+02 Score=25.49 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
-||||.|+|+-.-...+-|..+...+.++ +.++ .+.+ -|+.||.|+..+.
T Consensus 178 LDGIVTvvD~K~~~~~Lde~k~~g~i~EA---~~Qi----A~AD---~II~NKtDli~~e 227 (391)
T KOG2743|consen 178 LDGIVTVVDAKHILKHLDEEKPDGLINEA---TRQI----ALAD---RIIMNKTDLVSEE 227 (391)
T ss_pred eeeEEEEEehhhHHhhhcccCcccchHHH---HHHH----hhhh---eeeeccccccCHH
Confidence 48999999984333333333333333332 1222 1122 3567999998653
No 416
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=28.15 E-value=1.3e+02 Score=23.48 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=23.0
Q ss_pred CcceeeeecccccchhHHHHHHHHHHH
Q psy12099 136 KHYCYPHFTCAVDTENIRRVFNDCRDI 162 (174)
Q Consensus 136 ~~~~~~~~tsA~d~~~i~~~f~~~~~~ 162 (174)
...+.++..||+.+.+++.+++.+.+.
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~ 264 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHL 264 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHh
Confidence 455778899999999999999988764
No 417
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=27.88 E-value=1.7e+02 Score=26.99 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=28.4
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchH-H--HHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRL-R--ESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~-~--~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+++++|||..+ ....+- + .++..+..+...... ..+||+++..|...
T Consensus 201 gpDVVLlV~RL----------d~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 201 PPDIVLYVDRL----------DMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred CCCEEEEEEeC----------CCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence 68999999988 322221 1 244445555543222 36788889988764
No 418
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=27.84 E-value=2.6e+02 Score=21.01 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=35.9
Q ss_pred CeeCCCC-chhhhhHhhhhcC--CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQ-RDERRKWIQCFND--VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq-~~~r~~w~~y~~~--~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|+|++-. ...+.+-...+.+ ++++++|... +..+..++...++.+... .. ...-++.|+....
T Consensus 118 IiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p-----------~~~s~~~~~~~l~~l~~~-~~--~~~glVlN~~~~~ 183 (217)
T cd02035 118 VFDTAPTGHTLRLLVRELLTDPERTSFRLVTLP-----------EKLPLYETERAITELALY-GI--PVDAVVVNRVLPA 183 (217)
T ss_pred EECCCCchHHHHHHHHHHccCCCceEEEEEeCC-----------CccHHHHHHHHHHHHHHC-CC--CCCEEEEeCCcCc
Confidence 5677643 2223333344444 4778888766 566667776666665433 11 2346788988743
No 419
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=27.78 E-value=2.1e+02 Score=23.05 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=37.7
Q ss_pred hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccC
Q psy12099 17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFT 96 (174)
Q Consensus 17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~ 96 (174)
-..++|.+|.|--- .+-.+++.+..++-+ ++ -++|..++.||.++... .+++|+.+++
T Consensus 182 sl~~aD~ai~VTEP-----------Tp~glhD~kr~~el~-~~---f~ip~~iViNr~~~g~s-------~ie~~~~e~g 239 (284)
T COG1149 182 SLKGADLAILVTEP-----------TPFGLHDLKRALELV-EH---FGIPTGIVINRYNLGDS-------EIEEYCEEEG 239 (284)
T ss_pred hhccCCEEEEEecC-----------CccchhHHHHHHHHH-HH---hCCceEEEEecCCCCch-------HHHHHHHHcC
Confidence 35678888877654 566677766555544 32 36899999999965433 4455555554
No 420
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=27.61 E-value=2.3e+02 Score=20.15 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=36.3
Q ss_pred CeeCCCCchhhhhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.-.-.. .... ..++.+|+|... ...++.++...++.+.+. .-..+.++.|+.+-.
T Consensus 72 IiD~pp~~~~~~--~~~~~~~~ad~viiV~~p-----------~~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~~ 134 (169)
T cd02037 72 VIDMPPGTGDEH--LTLAQSLPIDGAVIVTTP-----------QEVALDDVRKAIDMFKKV---NIPILGVVENMSYFV 134 (169)
T ss_pred EEeCCCCCcHHH--HHHHhccCCCeEEEEECC-----------chhhHHHHHHHHHHHHhc---CCCeEEEEEcCCccc
Confidence 457766432111 1223 467888888866 566777777776666443 123456789998853
No 421
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=25.73 E-value=1.5e+02 Score=21.76 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=31.9
Q ss_pred EEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC----CCCCCCcEEEE
Q psy12099 23 AIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN----RWLRTISVILF 70 (174)
Q Consensus 23 ~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~----~~~~~~~iilv 70 (174)
-+++++|+|.. +..+|-.++|++.++.....+++. .....+-++.+
T Consensus 5 ~ivi~lD~S~S--M~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f 54 (183)
T cd01453 5 HLIIVIDCSRS--MEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISI 54 (183)
T ss_pred EEEEEEECcHH--HhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEE
Confidence 36899999865 445667789999999998888763 12233455555
No 422
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=25.43 E-value=70 Score=26.06 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=12.0
Q ss_pred CCEEEEEEeCCCcccc
Q psy12099 21 VTAIIFVTACSSYNMV 36 (174)
Q Consensus 21 ~~~ii~v~d~s~~~~~ 36 (174)
.+++|.|+|...+...
T Consensus 123 l~~vvtvvDa~~~~~~ 138 (318)
T PRK11537 123 LDGVIALVDAVHADEQ 138 (318)
T ss_pred eccEEEEEEhhhhhhh
Confidence 4789999999665443
No 423
>PF11185 DUF2971: Protein of unknown function (DUF2971); InterPro: IPR021352 This bacterial family of proteins has no known function.
Probab=25.00 E-value=64 Score=19.92 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=16.1
Q ss_pred hHhhhhcCCCEEEEEEeC
Q psy12099 13 KWIQCFNDVTAIIFVTAC 30 (174)
Q Consensus 13 ~w~~y~~~~~~ii~v~d~ 30 (174)
+|.+|-.+..|+.+.+|.
T Consensus 1 mW~~Y~~~~~Gv~i~f~~ 18 (90)
T PF11185_consen 1 MWRHYADNHKGVCIGFDD 18 (90)
T ss_pred ChHHhCCCCceEEEEEcc
Confidence 699999999999999973
No 424
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=24.89 E-value=1.6e+02 Score=26.29 Aligned_cols=57 Identities=11% Similarity=0.290 Sum_probs=35.5
Q ss_pred hcCCCEEEEEEeCCCcc-ccccCCCCcchHHHHHHHHHHHHcCCCC----CCCcEEEEEeCC
Q psy12099 18 FNDVTAIIFVTACSSYN-MVLREDPTQNRLRESLDLFKSIWNNRWL----RTISVILFLNKQ 74 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~-~~~~e~~~~~~~~~~~~~~~~i~~~~~~----~~~~iilv~NK~ 74 (174)
|.+-++||||+|+|.-= ++..+.+....|.+++.-...+++..-+ ..+-+++++++.
T Consensus 7 ~~~keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~ 68 (584)
T TIGR00578 7 YSGRDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEK 68 (584)
T ss_pred ccceeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccC
Confidence 45679999999997410 0011112356788888888887766433 235678887753
No 425
>KOG0780|consensus
Probab=24.15 E-value=2.3e+02 Score=24.31 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=18.6
Q ss_pred CeeCCCCchh-hhhHhhh-----hcCCCEEEEEEeCC
Q psy12099 1 MFDVGGQRDE-RRKWIQC-----FNDVTAIIFVTACS 31 (174)
Q Consensus 1 iwD~~Gq~~~-r~~w~~y-----~~~~~~ii~v~d~s 31 (174)
|.||+|...- .++.... .-+.+-+|||.|.+
T Consensus 188 IvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 188 IVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred EEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 5689885332 2222211 22578899999994
No 426
>KOG0458|consensus
Probab=23.72 E-value=2.1e+02 Score=25.68 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=37.8
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHH-cCCCCC
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW-NNRWLR 63 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~-~~~~~~ 63 (174)
+|.+||-++..+-..++. +.-+|+.+.-. |.+ +=+.+||++....+..++ ....+.
T Consensus 297 fd~~gQtrEha~llr~Lg-i~qlivaiNKm--D~V---~Wsq~RF~eIk~~l~~fL~~~~gf~ 353 (603)
T KOG0458|consen 297 FDPGGQTREHALLLRSLG-ISQLIVAINKM--DLV---SWSQDRFEEIKNKLSSFLKESCGFK 353 (603)
T ss_pred cCCCCchHHHHHHHHHcC-cceEEEEeecc--ccc---CccHHHHHHHHHHHHHHHHHhcCcc
Confidence 578999999988777775 66666655321 111 025689999998888888 554444
No 427
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=22.98 E-value=2.3e+02 Score=21.87 Aligned_cols=18 Identities=0% Similarity=0.008 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHHHHh
Q psy12099 149 TENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 149 ~~~i~~~f~~~~~~i~~~ 166 (174)
...+.+.|..+.+.++.+
T Consensus 229 ~~~~a~~~~~la~el~~~ 246 (268)
T TIGR01281 229 LAAVTQEYLRMAEYLLAG 246 (268)
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 345566788888877653
No 428
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.54 E-value=1.6e+02 Score=22.00 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=53.9
Q ss_pred CCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhcc
Q psy12099 5 GGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAG 84 (174)
Q Consensus 5 ~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~ 84 (174)
+|.-+....-..+..+.++-++++|+.-- .+...+.+...-|-..++. ..+++||+++-. .--...
T Consensus 42 sG~~~le~~~a~~ia~~~a~~~~ld~~~N-------~~~~~~~~~~~~fv~~iR~-~hP~tPIllv~~-~~~~~~----- 107 (178)
T PF14606_consen 42 SGNGKLEPEVADLIAEIDADLIVLDCGPN-------MSPEEFRERLDGFVKTIRE-AHPDTPILLVSP-IPYPAG----- 107 (178)
T ss_dssp TCCCS--HHHHHHHHHS--SEEEEEESHH-------CCTTTHHHHHHHHHHHHHT-T-SSS-EEEEE-----TTT-----
T ss_pred cCccccCHHHHHHHhcCCCCEEEEEeecC-------CCHHHHHHHHHHHHHHHHH-hCCCCCEEEEec-CCcccc-----
Confidence 56555555556677666777777777311 3556777777777776665 346799998621 000000
Q ss_pred ccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccc
Q psy12099 85 KSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCA 146 (174)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA 146 (174)
+++. .....+++..+.+.+.|.++.+ .+.+.+|+..-..
T Consensus 108 ------~~~~--------------~~~~~~~~~~~~~r~~v~~l~~---~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 108 ------YFDN--------------SRGETVEEFREALREAVEQLRK---EGDKNLYYLDGEE 146 (178)
T ss_dssp ------TS----------------TTS--HHHHHHHHHHHHHHHHH---TT-TTEEEE-HHH
T ss_pred ------ccCc--------------hHHHHHHHHHHHHHHHHHHHHH---cCCCcEEEeCchh
Confidence 0000 1123466677777788888765 4556677654433
No 429
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=22.33 E-value=58 Score=27.30 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=28.0
Q ss_pred CCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCC
Q psy12099 63 RTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDAT 105 (174)
Q Consensus 63 ~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 105 (174)
...|+++++||.|...+....--..+.++.++.+....|.||+
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH
Confidence 4579999999999865421000135667777776666777753
No 430
>KOG1552|consensus
Probab=22.27 E-value=2.6e+02 Score=22.22 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=41.8
Q ss_pred CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
.++=|+.+|-|.|-...-+.+..+...+....++-+.+... +..+|+|.|-=+
T Consensus 87 ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~Si 139 (258)
T KOG1552|consen 87 LNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRYG-SPERIILYGQSI 139 (258)
T ss_pred ccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhcC-CCceEEEEEecC
Confidence 46678999999999888888888888888888888766654 667888887643
No 431
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.95 E-value=3.3e+02 Score=19.98 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=27.4
Q ss_pred hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 18 FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
...++++|+|++. +..+........+.+-+. ....+-+|+||.|...
T Consensus 148 ~~~~D~vilV~~~-----------~~~~~~~~~~~~~~l~~~---~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 148 ARACDASILVTDA-----------GEIKKRDVQKAKEQLEQT---GSNFLGVVLNKVDISV 194 (204)
T ss_pred HHhCCeEEEEEEC-----------CCCCHHHHHHHHHHHHhC---CCCEEEEEEeCccccc
Confidence 3567888888877 333444444433333221 1235678899999653
No 432
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=21.69 E-value=3e+02 Score=21.93 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=23.8
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCch
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDL 76 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl 76 (174)
..|+.+|.+++. +..++..+...++.+.......+.+ .-++.|+.+.
T Consensus 137 ~~AD~viIp~~p-----------~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 137 NYADYCIIITDN-----------GFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred hcCCEEEEEecC-----------CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 456777776655 4555555444433322111112333 4478899873
No 433
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=21.43 E-value=2.4e+02 Score=19.83 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=25.9
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHH-cCCCCCCCcEEEE
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW-NNRWLRTISVILF 70 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~-~~~~~~~~~iilv 70 (174)
.-++.||.+-+ +...+-+.++.|+..+- .+|.+.++|++.=
T Consensus 83 q~dGti~Amc~----------tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~Fr 124 (126)
T PF14784_consen 83 QEDGTIFAMCM----------TGTSDKDSLLSWIRGLQETNPNLAQIPVLFR 124 (126)
T ss_pred eccceEEEEEe----------ccCCCHHHHHHHHHHHHhhCCchhcceEEEE
Confidence 34778888877 44444444555655542 5677888888753
No 434
>KOG0410|consensus
Probab=21.35 E-value=1.2e+02 Score=25.31 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=43.7
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCC----CcEEEEEeCCchhhHHHhccccchhhhhhcc
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRT----ISVILFLNKQDLLAEKVKAGKSRLEDYFQEF 95 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~----~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~ 95 (174)
.++.+|=|+|+ +.++ .++-.+....+++.-..+. ..++=|=||.|......+ .+
T Consensus 257 eadlllHvvDi----------ShP~-ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--~E--------- 314 (410)
T KOG0410|consen 257 EADLLLHVVDI----------SHPN-AEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--EE--------- 314 (410)
T ss_pred hcceEEEEeec----------CCcc-HHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--cc---------
Confidence 68999999999 4443 2333344444444433332 245667788887655433 11
Q ss_pred CCCCCCCCCCCCCCCChHHHH
Q psy12099 96 TRYQTPLDATPDPGEDPIVIR 116 (174)
Q Consensus 96 ~~~~~~~~a~~~~g~~~~~~~ 116 (174)
.....+.||++|.|.++...+
T Consensus 315 ~n~~v~isaltgdgl~el~~a 335 (410)
T KOG0410|consen 315 KNLDVGISALTGDGLEELLKA 335 (410)
T ss_pred cCCccccccccCccHHHHHHH
Confidence 111467899999996654433
No 435
>PRK10818 cell division inhibitor MinD; Provisional
Probab=21.17 E-value=3.4e+02 Score=20.92 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=35.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHH---cC--CCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW---NN--RWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~---~~--~~~~~~~iilv~NK~D 75 (174)
|.|+++.-... .......++.+|.+++. +..++..+...++.+. .. ....+....++.|+.|
T Consensus 118 iiD~p~~~~~~--~~~~l~~ad~vivv~~p-----------~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~ 184 (270)
T PRK10818 118 VCDSPAGIETG--ALMALYFADEAIITTNP-----------EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN 184 (270)
T ss_pred EEeCCCCccHH--HHHHHHhCCeEEEEcCC-----------CchHHHhHHHHHHHHHHhhccccccccccceEEEEeccC
Confidence 45776554322 23345778999998877 4445544444444432 11 1111234577889988
Q ss_pred hh
Q psy12099 76 LL 77 (174)
Q Consensus 76 l~ 77 (174)
..
T Consensus 185 ~~ 186 (270)
T PRK10818 185 PG 186 (270)
T ss_pred Hh
Confidence 54
No 436
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=21.01 E-value=91 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.3
Q ss_pred eeeecccccchhHHHHHHHHHHHH
Q psy12099 140 YPHFTCAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 140 ~~~~tsA~d~~~i~~~f~~~~~~i 163 (174)
.++.+||+++.++.++++++.+..
T Consensus 214 ~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 214 PVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred CEEEEEccCCCCHHHHHHHHHHHH
Confidence 478999999999999999998763
No 437
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=21.00 E-value=3.4e+02 Score=19.79 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=25.0
Q ss_pred CCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 41 PTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 41 ~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
..+.++++-.+|+.+. .|..+...++++|||-
T Consensus 94 dhp~s~~dK~eWl~E~--FPFi~~qn~vfCgnKn 125 (180)
T COG4502 94 DHPKSCEDKGEWLKEK--FPFISYQNIVFCGNKN 125 (180)
T ss_pred CCchhHHHHHHHHHHH--CCCCChhhEEEecCCC
Confidence 4678888889998884 4566677899999983
No 438
>PHA01747 putative ATP-dependent protease
Probab=20.12 E-value=1.5e+02 Score=25.16 Aligned_cols=88 Identities=9% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--------------CCCCcEEEE
Q psy12099 5 GGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--------------LRTISVILF 70 (174)
Q Consensus 5 ~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--------------~~~~~iilv 70 (174)
||+-....+.-.--.+.-|+|..+|.-.||+..--.- ....+....++.-+.+.. ...+|++++
T Consensus 220 GG~~TvA~LFyN~~t~~~GLVg~~D~VaFDEVa~i~f--~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~ 297 (425)
T PHA01747 220 TEPPTYANLVYDAKTNALGLVFLSNGLIFDEIQTWKD--SNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFA 297 (425)
T ss_pred CCCCchHHheEecCCCceeEEeeccEEEEEccccccC--CCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEe
Confidence 5555555554444456788999999988988743221 222344444444333211 126799999
Q ss_pred EeCCchhhHHHhccccc-hhhhhhccC
Q psy12099 71 LNKQDLLAEKVKAGKSR-LEDYFQEFT 96 (174)
Q Consensus 71 ~NK~Dl~~~~~~~~~~~-l~~~~~~~~ 96 (174)
||.-...-.... ..+ ++.++|++.
T Consensus 298 GNin~~~l~~~~--~~~~l~~~Lp~~~ 322 (425)
T PHA01747 298 GNPDSSTLDTYQ--TPNYIKNYLVSYE 322 (425)
T ss_pred cCCCCccccccc--cchhHHHhcchhh
Confidence 998642211122 223 566666643
Done!