Query psy12099
Match_columns 174
No_of_seqs 189 out of 1399
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:43:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 100.0 8.4E-42 2.9E-46 275.3 14.2 157 1-174 171-327 (327)
2 1azs_C GS-alpha; complex (lyas 100.0 2.5E-39 8.6E-44 267.0 19.8 174 1-174 221-394 (402)
3 4fid_A G protein alpha subunit 100.0 6E-40 2.1E-44 265.5 13.2 158 1-174 165-336 (340)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 3E-37 1E-41 252.2 12.3 157 1-174 205-361 (362)
5 1cip_A Protein (guanine nucleo 100.0 6.8E-37 2.3E-41 249.4 13.6 157 1-174 197-353 (353)
6 2xtz_A Guanine nucleotide-bind 100.0 6.4E-36 2.2E-40 243.7 14.8 163 1-174 187-354 (354)
7 4dkx_A RAS-related protein RAB 99.9 1E-23 3.5E-28 161.0 7.2 111 1-165 66-176 (216)
8 1fzq_A ADP-ribosylation factor 99.8 3.7E-20 1.3E-24 136.5 10.2 116 1-166 64-179 (181)
9 1r8s_A ADP-ribosylation factor 99.8 7.2E-20 2.5E-24 131.8 10.9 116 1-166 48-163 (164)
10 1upt_A ARL1, ADP-ribosylation 99.8 2.2E-19 7.4E-24 129.9 10.9 116 1-166 55-170 (171)
11 3t1o_A Gliding protein MGLA; G 99.8 1.4E-19 4.8E-24 133.7 9.3 117 1-168 78-195 (198)
12 1f6b_A SAR1; gtpases, N-termin 99.8 1.2E-19 4.2E-24 135.7 8.3 124 1-162 73-196 (198)
13 2x77_A ADP-ribosylation factor 99.8 3E-19 1E-23 131.9 10.0 117 1-167 70-186 (189)
14 3q72_A GTP-binding protein RAD 99.8 1.5E-19 5E-24 130.4 8.0 113 1-166 53-165 (166)
15 1m2o_B GTP-binding protein SAR 99.8 3E-19 1E-23 132.6 9.8 119 1-162 71-189 (190)
16 1ksh_A ARF-like protein 2; sma 99.8 4.7E-19 1.6E-23 130.4 10.6 116 1-166 66-181 (186)
17 4bas_A ADP-ribosylation factor 99.8 1.8E-19 6.3E-24 133.6 8.4 118 1-167 67-191 (199)
18 1moz_A ARL1, ADP-ribosylation 99.8 4.1E-19 1.4E-23 130.1 10.1 116 1-166 66-181 (183)
19 2b6h_A ADP-ribosylation factor 99.8 2.5E-19 8.7E-24 133.3 8.9 114 1-164 77-190 (192)
20 2hup_A RAS-related protein RAB 99.8 3E-19 1E-23 133.7 9.3 113 1-167 82-195 (201)
21 1zj6_A ADP-ribosylation factor 99.8 7.4E-19 2.5E-23 129.7 10.9 114 1-164 64-177 (187)
22 2h17_A ADP-ribosylation factor 99.8 5.4E-19 1.9E-23 129.9 9.7 112 1-162 69-180 (181)
23 3t5g_A GTP-binding protein RHE 99.8 3.4E-19 1.2E-23 130.5 7.8 114 1-167 58-171 (181)
24 3r7w_B Gtpase2, GTP-binding pr 99.8 7.6E-20 2.6E-24 147.0 4.4 120 1-165 50-174 (331)
25 2fu5_C RAS-related protein RAB 99.8 2.8E-19 9.6E-24 131.1 7.0 115 1-169 61-175 (183)
26 1zd9_A ADP-ribosylation factor 99.8 7.8E-19 2.7E-23 129.9 9.3 115 1-165 71-185 (188)
27 3q85_A GTP-binding protein REM 99.8 3.9E-19 1.3E-23 128.5 7.4 113 1-166 55-168 (169)
28 2a9k_A RAS-related protein RAL 99.8 6.4E-19 2.2E-23 129.0 8.6 116 1-169 70-185 (187)
29 3oes_A GTPase rhebl1; small GT 99.8 6.1E-19 2.1E-23 131.7 8.6 114 1-167 76-189 (201)
30 3cbq_A GTP-binding protein REM 99.8 4.2E-19 1.4E-23 132.6 7.4 114 1-167 76-190 (195)
31 3kkq_A RAS-related protein M-R 99.8 3E-19 1E-23 131.0 6.5 112 1-165 70-182 (183)
32 1u8z_A RAS-related protein RAL 99.8 4.5E-19 1.6E-23 127.4 7.3 112 1-165 56-167 (168)
33 3bc1_A RAS-related protein RAB 99.8 1.1E-18 3.7E-23 128.4 9.5 115 1-168 74-188 (195)
34 2a5j_A RAS-related protein RAB 99.8 7.7E-19 2.6E-23 130.1 8.3 114 1-168 74-187 (191)
35 2h57_A ADP-ribosylation factor 99.8 1.9E-18 6.4E-23 127.8 10.2 114 1-164 71-186 (190)
36 2fn4_A P23, RAS-related protei 99.8 8.1E-19 2.8E-23 127.8 8.0 114 1-167 61-174 (181)
37 4dsu_A GTPase KRAS, isoform 2B 99.8 9.8E-19 3.3E-23 128.4 8.2 113 1-167 56-168 (189)
38 1x3s_A RAS-related protein RAB 99.8 9.7E-19 3.3E-23 129.2 8.1 112 1-166 68-179 (195)
39 2g6b_A RAS-related protein RAB 99.8 4.7E-19 1.6E-23 129.3 6.3 114 1-168 64-177 (180)
40 2bov_A RAla, RAS-related prote 99.8 1.5E-18 5.1E-23 129.4 9.0 114 1-167 66-179 (206)
41 2yc2_C IFT27, small RAB-relate 99.8 1.2E-18 4.2E-23 129.8 8.5 117 1-170 77-197 (208)
42 1ky3_A GTP-binding protein YPT 99.8 1.3E-18 4.4E-23 126.8 8.2 117 1-168 62-181 (182)
43 2hxs_A RAB-26, RAS-related pro 99.8 5.4E-19 1.9E-23 128.7 6.2 115 1-168 60-176 (178)
44 2oil_A CATX-8, RAS-related pro 99.8 2.4E-18 8.2E-23 127.4 9.7 114 1-168 78-191 (193)
45 2bme_A RAB4A, RAS-related prot 99.8 2.2E-18 7.6E-23 126.5 9.4 112 1-166 63-174 (186)
46 2g3y_A GTP-binding protein GEM 99.8 2E-18 7E-23 131.0 9.4 113 1-166 91-204 (211)
47 3q3j_B RHO-related GTP-binding 99.8 1.4E-18 4.8E-23 131.5 8.4 123 1-166 79-204 (214)
48 2ew1_A RAS-related protein RAB 99.8 2E-18 6.9E-23 129.7 9.0 113 1-167 79-191 (201)
49 1kao_A RAP2A; GTP-binding prot 99.8 1.8E-18 6.2E-23 124.1 8.3 112 1-165 55-166 (167)
50 3tw8_B RAS-related protein RAB 99.8 2E-18 6.9E-23 125.7 8.4 115 1-170 62-176 (181)
51 1z0f_A RAB14, member RAS oncog 99.8 1.6E-18 5.5E-23 126.0 7.8 111 1-165 68-178 (179)
52 2nzj_A GTP-binding protein REM 99.8 2.2E-18 7.7E-23 125.0 8.5 114 1-167 56-171 (175)
53 2f7s_A C25KG, RAS-related prot 99.8 1.3E-18 4.4E-23 131.2 7.3 113 1-166 88-200 (217)
54 1r2q_A RAS-related protein RAB 99.8 2.6E-18 8.9E-23 123.8 8.5 109 1-163 59-167 (170)
55 1c1y_A RAS-related protein RAP 99.8 1.4E-18 4.7E-23 125.1 7.0 112 1-164 55-166 (167)
56 2o52_A RAS-related protein RAB 99.7 2.2E-18 7.6E-23 128.8 7.9 113 1-167 78-190 (200)
57 3tkl_A RAS-related protein RAB 99.7 3.2E-18 1.1E-22 126.6 8.6 113 1-167 69-181 (196)
58 2q3h_A RAS homolog gene family 99.7 4.1E-18 1.4E-22 126.9 9.2 125 1-167 72-197 (201)
59 3con_A GTPase NRAS; structural 99.7 2.5E-18 8.4E-23 126.9 7.8 117 1-171 73-189 (190)
60 3ihw_A Centg3; RAS, centaurin, 99.7 2.7E-18 9.3E-23 126.9 8.0 112 1-167 71-182 (184)
61 1wms_A RAB-9, RAB9, RAS-relate 99.7 3.7E-18 1.3E-22 124.2 8.5 113 1-166 60-175 (177)
62 3dz8_A RAS-related protein RAB 99.7 1.3E-18 4.4E-23 128.9 6.1 112 1-166 76-187 (191)
63 3c5c_A RAS-like protein 12; GD 99.7 2.1E-18 7E-23 127.7 7.0 111 1-165 73-186 (187)
64 2gf9_A RAS-related protein RAB 99.7 3.9E-18 1.3E-22 126.0 8.4 112 1-166 75-186 (189)
65 2il1_A RAB12; G-protein, GDP, 99.7 4.7E-18 1.6E-22 126.2 8.7 113 1-166 79-191 (192)
66 1z06_A RAS-related protein RAB 99.7 2.8E-18 9.5E-23 126.8 7.4 111 1-164 73-187 (189)
67 2bcg_Y Protein YP2, GTP-bindin 99.7 4.7E-18 1.6E-22 127.1 8.7 112 1-166 61-172 (206)
68 2atv_A RERG, RAS-like estrogen 99.7 2.9E-18 9.9E-23 127.5 7.5 113 1-167 80-193 (196)
69 3l82_B F-box only protein 4; T 99.7 5E-19 1.7E-23 133.5 3.2 112 3-166 108-224 (227)
70 2efe_B Small GTP-binding prote 99.7 3.3E-18 1.1E-22 124.9 7.6 112 1-166 65-176 (181)
71 1zbd_A Rabphilin-3A; G protein 99.7 4.3E-18 1.5E-22 127.0 8.2 113 1-167 61-173 (203)
72 3cpj_B GTP-binding protein YPT 99.7 2.1E-18 7.1E-23 131.0 6.4 112 1-166 66-177 (223)
73 3reg_A RHO-like small GTPase; 99.7 2.1E-18 7.1E-23 127.9 6.3 114 1-167 75-190 (194)
74 1z08_A RAS-related protein RAB 99.7 3.2E-18 1.1E-22 123.6 7.1 110 1-164 59-168 (170)
75 2j0v_A RAC-like GTP-binding pr 99.7 3E-18 1E-22 128.8 7.0 120 1-166 61-181 (212)
76 2atx_A Small GTP binding prote 99.7 6E-18 2.1E-22 125.3 8.5 122 1-164 70-192 (194)
77 1m7b_A RND3/RHOE small GTP-bin 99.7 5.6E-18 1.9E-22 124.7 8.1 123 1-165 59-183 (184)
78 1g16_A RAS-related protein SEC 99.7 3E-18 1E-22 123.6 6.4 111 1-166 56-166 (170)
79 1ek0_A Protein (GTP-binding pr 99.7 3E-18 1E-22 123.4 6.3 112 1-163 56-167 (170)
80 1z2a_A RAS-related protein RAB 99.7 2.7E-18 9.3E-23 123.6 6.0 110 1-165 58-167 (168)
81 2fg5_A RAB-22B, RAS-related pr 99.7 7E-18 2.4E-22 125.1 8.2 111 1-165 76-186 (192)
82 2j1l_A RHO-related GTP-binding 99.7 4.8E-18 1.6E-22 128.4 7.2 126 1-168 86-212 (214)
83 3clv_A RAB5 protein, putative; 99.7 1.3E-17 4.3E-22 123.4 9.2 109 1-166 97-205 (208)
84 3o47_A ADP-ribosylation factor 99.7 8.2E-18 2.8E-22 135.6 8.7 115 1-165 213-327 (329)
85 2gco_A H9, RHO-related GTP-bin 99.7 9.8E-18 3.4E-22 125.3 8.5 122 1-164 77-199 (201)
86 3bwd_D RAC-like GTP-binding pr 99.7 8.1E-18 2.8E-22 122.9 7.9 120 1-164 60-180 (182)
87 1gwn_A RHO-related GTP-binding 99.7 1.1E-17 3.6E-22 126.0 8.6 123 1-165 80-204 (205)
88 3lvq_E ARF-GAP with SH3 domain 99.7 1.6E-17 5.4E-22 140.3 10.0 116 1-166 370-485 (497)
89 2ce2_X GTPase HRAS; signaling 99.7 7E-18 2.4E-22 120.7 6.5 111 1-165 55-165 (166)
90 1vg8_A RAS-related protein RAB 99.7 9.1E-18 3.1E-22 125.3 7.4 114 1-167 61-177 (207)
91 2cjw_A GTP-binding protein GEM 99.7 1.6E-17 5.3E-22 123.7 8.6 113 1-166 60-173 (192)
92 3llu_A RAS-related GTP-binding 99.7 6.9E-17 2.4E-21 120.2 11.9 118 1-163 73-195 (196)
93 1z0j_A RAB-22, RAS-related pro 99.7 2.1E-17 7.2E-22 119.1 8.6 109 1-163 59-167 (170)
94 2fv8_A H6, RHO-related GTP-bin 99.7 2.1E-17 7.1E-22 124.0 8.8 125 1-167 77-202 (207)
95 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.3E-17 7.7E-22 120.7 8.7 123 1-165 57-180 (186)
96 2p5s_A RAS and EF-hand domain 99.7 1.4E-17 4.7E-22 124.2 7.6 117 1-165 81-197 (199)
97 2y8e_A RAB-protein 6, GH09086P 99.7 6.9E-18 2.4E-22 122.6 5.6 110 1-164 67-176 (179)
98 4gzl_A RAS-related C3 botulinu 99.7 1.1E-17 3.7E-22 125.5 6.8 121 1-163 82-203 (204)
99 2iwr_A Centaurin gamma 1; ANK 99.7 3.2E-17 1.1E-21 119.6 8.8 114 1-169 58-173 (178)
100 3gj0_A GTP-binding nuclear pro 99.7 1.2E-17 4.1E-22 126.4 5.9 109 1-166 68-176 (221)
101 3cph_A RAS-related protein SEC 99.7 2.1E-17 7.1E-22 123.8 7.0 111 1-166 73-183 (213)
102 4djt_A GTP-binding nuclear pro 99.7 4.9E-17 1.7E-21 122.6 8.6 112 1-166 65-176 (218)
103 3l0i_B RAS-related protein RAB 99.7 8.7E-18 3E-22 125.3 3.6 110 1-164 86-195 (199)
104 2erx_A GTP-binding protein DI- 99.7 1.1E-17 3.8E-22 120.6 3.6 111 1-164 55-166 (172)
105 3l2o_B F-box only protein 4; s 99.7 7.6E-18 2.6E-22 132.6 2.3 112 3-166 193-309 (312)
106 2gf0_A GTP-binding protein DI- 99.7 1.1E-17 3.7E-22 124.0 2.9 112 1-166 60-172 (199)
107 2zej_A Dardarin, leucine-rich 99.7 5.9E-17 2E-21 119.4 5.7 114 1-166 60-179 (184)
108 2fh5_B SR-beta, signal recogni 99.6 3.4E-16 1.2E-20 117.6 8.6 69 1-79 58-130 (214)
109 3th5_A RAS-related C3 botulinu 99.4 1.4E-17 4.6E-22 124.6 0.0 121 1-164 82-204 (204)
110 2wkq_A NPH1-1, RAS-related C3 99.6 4.5E-16 1.5E-20 124.0 8.7 123 1-165 207-330 (332)
111 3c5h_A Glucocorticoid receptor 99.6 2.2E-16 7.6E-21 122.7 5.6 107 4-164 125-254 (255)
112 2lkc_A Translation initiation 99.6 1.3E-15 4.5E-20 110.6 8.7 117 1-169 59-175 (178)
113 2wji_A Ferrous iron transport 99.6 5.2E-15 1.8E-19 107.1 9.1 102 1-163 54-163 (165)
114 3r7w_A Gtpase1, GTP-binding pr 99.6 3.7E-15 1.3E-19 118.9 7.9 117 1-164 56-180 (307)
115 2f9l_A RAB11B, member RAS onco 99.6 7.3E-15 2.5E-19 109.4 8.8 112 1-166 58-169 (199)
116 1u0l_A Probable GTPase ENGC; p 99.6 5.4E-15 1.9E-19 117.7 7.2 101 1-160 67-168 (301)
117 2dyk_A GTP-binding protein; GT 99.5 1.8E-14 6.1E-19 102.8 7.1 101 1-163 53-160 (161)
118 2qu8_A Putative nucleolar GTP- 99.5 7.3E-14 2.5E-18 106.2 9.9 117 1-167 80-207 (228)
119 1svi_A GTP-binding protein YSX 99.5 9.6E-14 3.3E-18 102.3 10.1 108 1-163 73-193 (195)
120 1oix_A RAS-related protein RAB 99.5 3.7E-14 1.3E-18 105.2 7.6 109 1-163 82-190 (191)
121 2wjg_A FEOB, ferrous iron tran 99.5 6.2E-14 2.1E-18 102.8 8.2 105 1-166 58-170 (188)
122 1nrj_B SR-beta, signal recogni 99.5 2.5E-15 8.5E-20 113.2 0.6 145 1-161 59-216 (218)
123 3pqc_A Probable GTP-binding pr 99.5 1.2E-13 4.1E-18 101.5 8.9 108 1-165 72-194 (195)
124 2gj8_A MNME, tRNA modification 99.5 2E-14 7E-19 104.9 4.1 102 1-165 56-166 (172)
125 2cxx_A Probable GTP-binding pr 99.5 1.3E-14 4.6E-19 106.3 2.9 116 1-167 48-186 (190)
126 4dhe_A Probable GTP-binding pr 99.4 1.6E-12 5.6E-17 97.8 10.3 117 1-166 83-212 (223)
127 3b1v_A Ferrous iron uptake tra 99.4 6.6E-13 2.2E-17 104.3 8.0 97 1-116 53-157 (272)
128 4dcu_A GTP-binding protein ENG 99.4 3.5E-13 1.2E-17 112.8 6.5 113 1-166 247-370 (456)
129 3a1s_A Iron(II) transport prot 99.4 1.6E-12 5.6E-17 101.2 8.4 99 1-118 56-162 (258)
130 3dpu_A RAB family protein; roc 99.4 6.2E-13 2.1E-17 113.3 5.9 105 1-121 102-206 (535)
131 3iby_A Ferrous iron transport 99.3 9.4E-13 3.2E-17 102.5 5.9 90 1-109 52-153 (256)
132 3i8s_A Ferrous iron transport 99.3 2E-12 6.8E-17 101.5 7.7 63 1-80 54-128 (274)
133 2hjg_A GTP-binding protein ENG 99.3 1.1E-12 3.7E-17 109.3 5.8 112 1-165 227-349 (436)
134 3iev_A GTP-binding protein ERA 99.3 4E-12 1.4E-16 101.3 8.5 99 1-115 63-174 (308)
135 3sjy_A Translation initiation 99.3 9.2E-12 3.1E-16 102.7 9.3 112 1-163 79-190 (403)
136 3k53_A Ferrous iron transport 99.3 2.2E-11 7.7E-16 95.1 9.8 96 1-114 54-157 (271)
137 1wf3_A GTP-binding protein; GT 99.3 2.2E-11 7.6E-16 96.8 9.8 92 1-109 59-159 (301)
138 2ged_A SR-beta, signal recogni 99.2 1.8E-12 6.2E-17 95.4 2.7 69 1-79 95-171 (193)
139 1mky_A Probable GTP-binding pr 99.2 2.9E-11 9.9E-16 100.7 9.7 64 1-79 53-125 (439)
140 3izy_P Translation initiation 99.2 1.1E-11 3.6E-16 105.7 5.9 64 1-79 56-119 (537)
141 2hjg_A GTP-binding protein ENG 99.2 4.2E-11 1.4E-15 99.7 8.4 64 1-79 55-126 (436)
142 3gee_A MNME, tRNA modification 99.2 4E-11 1.4E-15 101.0 8.0 63 1-79 285-358 (476)
143 3qq5_A Small GTP-binding prote 99.2 4.1E-11 1.4E-15 99.5 7.1 101 1-121 87-194 (423)
144 2e87_A Hypothetical protein PH 99.2 1.8E-10 6.3E-15 93.4 10.7 109 1-166 218-337 (357)
145 1s0u_A EIF-2-gamma, translatio 99.2 7.3E-11 2.5E-15 97.4 8.2 112 1-163 85-196 (408)
146 1g7s_A Translation initiation 99.2 5.4E-11 1.8E-15 102.6 7.6 138 1-164 74-217 (594)
147 2c78_A Elongation factor TU-A; 99.2 7.8E-11 2.7E-15 97.1 8.1 63 1-78 79-142 (405)
148 1lnz_A SPO0B-associated GTP-bi 99.1 6.7E-11 2.3E-15 95.7 7.0 108 1-121 210-328 (342)
149 1xzp_A Probable tRNA modificat 99.1 8.5E-11 2.9E-15 99.1 7.2 61 1-78 295-364 (482)
150 2ywe_A GTP-binding protein LEP 99.1 2.1E-10 7.3E-15 98.9 9.6 64 1-79 77-140 (600)
151 3p26_A Elongation factor 1 alp 99.1 2.1E-10 7.2E-15 96.6 9.4 65 1-78 115-185 (483)
152 1d2e_A Elongation factor TU (E 99.1 1.1E-10 3.8E-15 96.0 7.5 63 1-78 70-133 (397)
153 3cb4_D GTP-binding protein LEP 99.1 1.4E-10 4.9E-15 100.0 8.3 64 1-79 75-138 (599)
154 1jny_A EF-1-alpha, elongation 99.1 2.1E-11 7E-16 101.5 2.7 64 1-78 88-158 (435)
155 1wb1_A Translation elongation 99.1 3.3E-10 1.1E-14 95.5 9.9 112 1-164 77-188 (482)
156 3tr5_A RF-3, peptide chain rel 99.1 4.7E-10 1.6E-14 95.5 10.3 63 1-78 86-148 (528)
157 1kk1_A EIF2gamma; initiation o 99.1 3.1E-10 1.1E-14 93.6 8.7 112 1-163 87-198 (410)
158 1zo1_I IF2, translation initia 99.1 6.7E-11 2.3E-15 100.1 4.1 64 1-79 55-118 (501)
159 3j2k_7 ERF3, eukaryotic polype 99.1 5.5E-10 1.9E-14 93.1 9.6 64 1-78 99-169 (439)
160 1mky_A Probable GTP-binding pr 99.1 6.7E-10 2.3E-14 92.5 9.5 112 1-165 232-355 (439)
161 4dcu_A GTP-binding protein ENG 99.0 2.1E-10 7.1E-15 95.9 6.0 64 1-79 75-146 (456)
162 1zun_B Sulfate adenylate trans 99.0 3.3E-10 1.1E-14 94.2 7.0 99 1-113 108-214 (434)
163 3geh_A MNME, tRNA modification 99.0 1E-09 3.4E-14 92.1 8.6 94 1-116 276-377 (462)
164 2elf_A Protein translation elo 99.0 1.7E-09 6E-14 88.2 9.5 108 1-164 64-179 (370)
165 1f60_A Elongation factor EEF1A 99.0 1.1E-09 3.7E-14 91.8 7.9 63 1-77 89-158 (458)
166 2yv5_A YJEQ protein; hydrolase 99.0 6.7E-10 2.3E-14 88.3 6.2 60 6-79 65-125 (302)
167 2xtp_A GTPase IMAP family memb 99.0 1.1E-09 3.9E-14 84.5 7.2 119 1-165 75-208 (260)
168 3avx_A Elongation factor TS, e 98.9 8.8E-10 3E-14 100.5 6.7 63 1-78 363-426 (1289)
169 2qtf_A Protein HFLX, GTP-bindi 98.9 2.4E-09 8.3E-14 87.2 8.8 117 1-167 230-356 (364)
170 2aka_B Dynamin-1; fusion prote 98.9 8.9E-09 3.1E-13 80.7 10.8 104 1-119 129-249 (299)
171 3izq_1 HBS1P, elongation facto 98.9 1.3E-09 4.4E-14 94.3 6.4 65 1-78 249-319 (611)
172 2qag_A Septin-2, protein NEDD5 98.9 5.5E-10 1.9E-14 90.9 3.4 63 1-79 99-189 (361)
173 2dy1_A Elongation factor G; tr 98.8 3.3E-09 1.1E-13 92.6 6.3 62 1-77 78-139 (665)
174 1r5b_A Eukaryotic peptide chai 98.8 3.6E-10 1.2E-14 94.9 -0.0 99 1-113 125-242 (467)
175 1ega_A Protein (GTP-binding pr 98.8 7.7E-09 2.6E-13 82.0 7.3 92 1-111 60-163 (301)
176 3lxx_A GTPase IMAP family memb 98.8 5.8E-09 2E-13 79.6 6.3 68 1-79 82-160 (239)
177 3t5d_A Septin-7; GTP-binding p 98.8 3.3E-09 1.1E-13 82.9 4.3 63 1-78 69-158 (274)
178 3lxw_A GTPase IMAP family memb 98.8 4.3E-08 1.5E-12 75.5 10.3 67 1-78 74-153 (247)
179 3mca_A HBS1, elongation factor 98.8 2.4E-09 8.1E-14 92.4 3.3 70 1-78 259-329 (592)
180 3h2y_A GTPase family protein; 98.8 1.6E-08 5.4E-13 82.5 7.9 57 6-79 55-111 (368)
181 2rdo_7 EF-G, elongation factor 98.8 3.6E-08 1.2E-12 86.6 10.4 65 1-80 86-150 (704)
182 1dar_A EF-G, elongation factor 98.8 2.4E-08 8.3E-13 87.5 9.2 64 1-79 81-144 (691)
183 2h5e_A Peptide chain release f 98.7 5E-09 1.7E-13 89.2 4.3 63 1-78 86-148 (529)
184 2j69_A Bacterial dynamin-like 98.7 8.5E-08 2.9E-12 84.1 11.9 65 1-79 178-245 (695)
185 3ec1_A YQEH GTPase; atnos1, at 98.7 2.1E-08 7.3E-13 81.7 6.6 58 5-79 56-113 (369)
186 1yrb_A ATP(GTP)binding protein 98.7 4.5E-08 1.5E-12 75.2 7.6 68 1-79 113-186 (262)
187 1pui_A ENGB, probable GTP-bind 98.7 2.2E-07 7.7E-12 68.8 10.9 109 1-163 76-197 (210)
188 2xex_A Elongation factor G; GT 98.6 2.3E-07 7.8E-12 81.4 10.3 64 1-79 79-142 (693)
189 3t34_A Dynamin-related protein 98.5 7E-08 2.4E-12 78.1 4.5 65 1-79 140-218 (360)
190 1jwy_B Dynamin A GTPase domain 98.5 1.2E-07 4.2E-12 74.8 5.6 66 1-79 135-213 (315)
191 1udx_A The GTP-binding protein 98.5 2.6E-07 8.8E-12 76.5 7.2 109 1-165 209-325 (416)
192 2wsm_A Hydrogenase expression/ 98.4 1.2E-06 4.2E-11 65.4 8.8 27 139-165 188-214 (221)
193 1n0u_A EF-2, elongation factor 98.4 2.5E-07 8.7E-12 82.7 5.8 63 1-78 102-164 (842)
194 3def_A T7I23.11 protein; chlor 98.4 6.9E-08 2.4E-12 74.8 1.9 66 1-77 88-164 (262)
195 3p32_A Probable GTPase RV1496/ 98.4 1.3E-06 4.5E-11 70.6 8.5 57 1-79 176-232 (355)
196 2x2e_A Dynamin-1; nitration, h 98.4 3.8E-07 1.3E-11 73.7 5.1 104 1-119 134-254 (353)
197 2qnr_A Septin-2, protein NEDD5 98.3 1.4E-07 4.9E-12 74.7 2.5 26 139-165 189-214 (301)
198 2qpt_A EH domain-containing pr 98.2 1.1E-06 3.9E-11 75.0 4.8 64 1-78 158-232 (550)
199 1puj_A YLQF, conserved hypothe 98.2 4.7E-06 1.6E-10 65.4 7.7 104 2-125 5-108 (282)
200 1h65_A Chloroplast outer envel 98.2 5.5E-07 1.9E-11 69.9 2.1 67 1-78 91-168 (270)
201 1wxq_A GTP-binding protein; st 97.9 4.8E-06 1.6E-10 68.4 2.7 32 1-32 75-113 (397)
202 2qag_C Septin-7; cell cycle, c 97.9 4.7E-06 1.6E-10 69.0 2.5 24 51-79 159-182 (418)
203 2p67_A LAO/AO transport system 97.9 1.6E-05 5.3E-10 63.9 5.1 57 1-79 153-209 (341)
204 3vqt_A RF-3, peptide chain rel 97.8 0.00015 5.1E-09 61.9 10.6 65 1-80 104-168 (548)
205 2www_A Methylmalonic aciduria 97.8 7.7E-05 2.6E-09 60.1 8.3 56 1-78 171-226 (349)
206 2dby_A GTP-binding protein; GD 97.5 0.00022 7.7E-09 57.9 7.4 32 1-32 73-111 (368)
207 3j25_A Tetracycline resistance 97.5 0.00012 4E-09 63.7 6.0 65 1-80 71-135 (638)
208 2hf9_A Probable hydrogenase ni 97.5 9.2E-05 3.2E-09 55.2 4.4 27 139-165 198-224 (226)
209 3zvr_A Dynamin-1; hydrolase, D 97.4 0.00068 2.3E-08 60.0 9.0 103 1-119 154-274 (772)
210 3cnl_A YLQF, putative uncharac 97.2 0.00014 4.9E-09 56.3 2.9 51 10-79 11-61 (262)
211 1jal_A YCHF protein; nucleotid 96.9 0.0032 1.1E-07 51.1 7.9 32 1-32 70-108 (363)
212 4fn5_A EF-G 1, elongation fact 96.8 0.00087 3E-08 58.8 4.1 65 1-80 89-153 (709)
213 2rcn_A Probable GTPase ENGC; Y 96.6 0.0074 2.5E-07 48.8 7.7 48 18-79 128-175 (358)
214 1t9h_A YLOQ, probable GTPase E 96.4 0.0011 3.7E-08 52.6 1.8 84 14-110 80-164 (307)
215 2qm8_A GTPase/ATPase; G protei 96.2 0.011 3.7E-07 47.3 6.5 27 1-30 152-178 (337)
216 2ohf_A Protein OLA1, GTP-bindi 95.4 0.015 5E-07 47.7 4.4 33 1-33 90-129 (396)
217 2j37_W Signal recognition part 85.6 1.6 5.5E-05 36.7 6.2 59 1-77 188-253 (504)
218 4a9a_A Ribosome-interacting GT 83.0 0.93 3.2E-05 36.7 3.5 50 16-77 145-195 (376)
219 4dzz_A Plasmid partitioning pr 80.0 4 0.00014 28.9 5.8 63 1-77 80-143 (206)
220 3end_A Light-independent proto 72.0 14 0.00048 28.1 7.3 64 1-76 161-225 (307)
221 1ni3_A YCHF GTPase, YCHF GTP-b 70.8 2.4 8.1E-05 34.5 2.6 32 1-32 89-127 (392)
222 3cwq_A Para family chromosome 68.7 10 0.00034 27.3 5.5 62 1-78 72-134 (209)
223 2ph1_A Nucleotide-binding prot 65.1 19 0.00066 26.7 6.6 61 1-76 133-194 (262)
224 1g3q_A MIND ATPase, cell divis 64.8 15 0.0005 26.6 5.8 61 1-77 116-176 (237)
225 1j8m_F SRP54, signal recogniti 64.6 17 0.00057 28.0 6.3 59 1-77 185-252 (297)
226 3q9l_A Septum site-determining 63.9 9.5 0.00032 28.0 4.6 65 1-78 118-187 (260)
227 3ea0_A ATPase, para family; al 63.3 18 0.00062 26.2 6.1 63 1-77 123-185 (245)
228 2v3c_C SRP54, signal recogniti 61.9 23 0.00079 28.9 6.9 59 1-77 185-251 (432)
229 1bif_A 6-phosphofructo-2-kinas 61.4 9.9 0.00034 31.2 4.7 30 1-30 91-130 (469)
230 3ec1_A YQEH GTPase; atnos1, at 61.2 1.1 3.9E-05 35.8 -1.1 16 63-78 273-288 (369)
231 3dm5_A SRP54, signal recogniti 60.0 15 0.00051 30.3 5.4 61 1-78 187-253 (443)
232 3k9g_A PF-32 protein; ssgcid, 59.7 30 0.001 25.5 6.9 60 1-75 149-208 (267)
233 3kjh_A CO dehydrogenase/acetyl 58.0 17 0.00059 26.2 5.1 60 1-76 136-195 (254)
234 1hyq_A MIND, cell division inh 53.0 16 0.00056 26.8 4.3 61 1-77 115-175 (263)
235 1lnz_A SPO0B-associated GTP-bi 52.6 5.9 0.0002 31.4 1.8 27 139-165 304-330 (342)
236 1wcv_1 SOJ, segregation protei 51.3 24 0.00083 26.0 5.0 63 1-77 116-182 (257)
237 3iev_A GTP-binding protein ERA 50.7 7.5 0.00026 30.0 2.1 25 139-163 156-180 (308)
238 3qq5_A Small GTP-binding prote 47.6 4.7 0.00016 33.0 0.5 28 137-164 168-195 (423)
239 3u7r_A NADPH-dependent FMN red 44.4 32 0.0011 24.7 4.5 54 13-73 60-113 (190)
240 2fu5_C RAS-related protein RAB 40.8 11 0.00036 25.9 1.4 30 98-127 146-175 (183)
241 3kl4_A SRP54, signal recogniti 40.7 51 0.0017 27.0 5.7 41 20-77 211-251 (433)
242 2xxa_A Signal recognition part 38.5 90 0.0031 25.4 6.8 30 1-30 188-223 (433)
243 2qag_B Septin-6, protein NEDD5 38.1 32 0.0011 28.1 4.1 17 63-79 175-191 (427)
244 1jey_A KU70; double-strand DNA 37.9 39 0.0013 28.8 4.8 55 18-74 32-92 (609)
245 3bc1_A RAS-related protein RAB 37.9 17 0.00057 24.8 2.1 27 98-124 160-186 (195)
246 3sop_A Neuronal-specific septi 37.5 47 0.0016 25.0 4.8 44 21-79 112-155 (270)
247 1cp2_A CP2, nitrogenase iron p 33.0 77 0.0026 23.1 5.3 47 19-76 139-186 (269)
248 2f7s_A C25KG, RAS-related prot 32.7 18 0.00061 25.6 1.6 30 98-127 174-203 (217)
249 1jey_B KU80; double-strand DNA 29.0 77 0.0026 26.6 5.1 51 22-74 8-63 (565)
250 4b4t_W RPN10, 26S proteasome r 27.0 87 0.003 23.8 4.6 34 23-58 5-38 (268)
251 2oze_A ORF delta'; para, walke 25.7 98 0.0033 23.0 4.8 67 1-78 159-226 (298)
252 3bfv_A CAPA1, CAPB2, membrane 25.6 1.1E+02 0.0036 22.9 4.9 43 19-76 213-256 (271)
253 2l82_A Designed protein OR32; 23.7 1E+02 0.0035 20.3 3.8 51 9-78 67-117 (162)
254 2ffh_A Protein (FFH); SRP54, s 23.4 1.4E+02 0.0046 24.3 5.4 30 1-30 185-220 (425)
255 2afh_E Nitrogenase iron protei 22.5 1.4E+02 0.0048 22.0 5.1 44 19-76 142-189 (289)
256 3cio_A ETK, tyrosine-protein k 21.4 1.4E+02 0.0046 22.7 4.8 60 1-76 218-278 (299)
257 3szr_A Interferon-induced GTP- 21.1 60 0.0021 27.6 3.0 58 9-79 172-229 (608)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=8.4e-42 Score=275.30 Aligned_cols=157 Identities=48% Similarity=0.833 Sum_probs=144.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||+++|++|.+||++++++|||+|+|+||+++.++++.+++.+++.||.++++++++.++|++|||||+|+++++
T Consensus 171 iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k 250 (327)
T 3ohm_A 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK 250 (327)
T ss_dssp EEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred EEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. ..+++.|||+|++ .+.++++|.+||.++|.++++ +..+.+++|+|||+|+.||+.+|..++
T Consensus 251 i~--~~~l~~~fp~y~g------------~~~~~e~a~~fi~~~F~~~~~---~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 251 IM--YSHLVDYFPEYDG------------PQRDAQAAREFILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp TT--TSCGGGTCTTCCS------------CSSCHHHHHHHHHHHHHSSCT---TTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hc--cchHhhhchhccC------------CCCCHHHHHHHHHHHHHhhcc---cccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 88 7899999999984 445789999999999999987 567889999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q psy12099 161 DIIQRMHLRQYELL 174 (174)
Q Consensus 161 ~~i~~~~~~~~~l~ 174 (174)
+.|++++|+++||+
T Consensus 314 ~~Il~~~l~~~~l~ 327 (327)
T 3ohm_A 314 DTILQLNLKEYNLV 327 (327)
T ss_dssp HHHHHTTCC-----
T ss_pred HHHHHHhHHhcCCC
Confidence 99999999999985
No 2
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=2.5e-39 Score=266.99 Aligned_cols=174 Identities=89% Similarity=1.432 Sum_probs=155.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||+++|++|.+||++++++|||||+++||+++.|+.+.++|.++..||..+++++++.++|++|||||+|++.++
T Consensus 221 iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k 300 (402)
T 1azs_C 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK 300 (402)
T ss_dssp EEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHH
T ss_pred ecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhh
Confidence 69999999999999999999999999999999999999999999999999999999998888899999999999999888
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+..+..++++|||+|.+...+..+...+|.+.++++|..||..+|.++++......+.+++|+|||+|+.||+++|.++.
T Consensus 301 i~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~ 380 (402)
T 1azs_C 301 VLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR 380 (402)
T ss_dssp HHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHH
Confidence 74224689999999997666666666667777899999999999999876322234579999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q psy12099 161 DIIQRMHLRQYELL 174 (174)
Q Consensus 161 ~~i~~~~~~~~~l~ 174 (174)
+.|++++++.+||+
T Consensus 381 ~~I~~~~l~~~~~~ 394 (402)
T 1azs_C 381 DIIQRMHLRQYELL 394 (402)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999999985
No 3
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=6e-40 Score=265.49 Aligned_cols=158 Identities=36% Similarity=0.599 Sum_probs=141.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||+++|++|.+||++++++|||+|+|+|||++.|+.+.+++.+++.||..+++++++.++|++|||||+|++.++
T Consensus 165 iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ek 244 (340)
T 4fid_A 165 LIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEK 244 (340)
T ss_dssp EEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHH
T ss_pred cccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHH------HHhhhcCC--------CCCcceeeeeccc
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEF------LRISTASG--------DGKHYCYPHFTCA 146 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f------~~~~~~~~--------~~~~~~~~~~tsA 146 (174)
+. ..+++++||+|.+ .. ++++|.+||.++| .++++... +.++.+++|+|||
T Consensus 245 i~--~~~l~~~fp~y~g------------~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA 309 (340)
T 4fid_A 245 LT--KVPLNTIFPEYTG------------GD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA 309 (340)
T ss_dssp HH--HSCGGGTCTTCCC------------TT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred cC--cchHHHhhhhhcC------------CC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence 88 7899999999984 22 6999999999999 66665221 1126799999999
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccCC
Q psy12099 147 VDTENIRRVFNDCRDIIQRMHLRQYELL 174 (174)
Q Consensus 147 ~d~~~i~~~f~~~~~~i~~~~~~~~~l~ 174 (174)
+|+.||+.+|..+++.|++ +|+++||+
T Consensus 310 ~dt~nv~~vF~~v~~~Il~-~l~~~~~~ 336 (340)
T 4fid_A 310 TDGSNIKRVFMLAVDVIMK-NMAANGKM 336 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred eCcHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence 9999999999999999999 99999885
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=3e-37 Score=252.21 Aligned_cols=157 Identities=45% Similarity=0.755 Sum_probs=132.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||+++|++|.+||++++++|||+|+|+||+++.||.+.+++.++..||..+++++++.++|++||+||+|++.++
T Consensus 205 i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~k 284 (362)
T 1zcb_A 205 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK 284 (362)
T ss_dssp EEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred EEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhh
Confidence 69999999999999999999999999999999999999999999999999999999998888999999999999999998
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. ..++..+||+|++ ...++++|.+|+..+|.++++. ...+.+++|+|||++++||+++|.++.
T Consensus 285 i~--~~~l~~~fp~y~g------------~~~~~~e~~~~~~~~f~~l~~~--~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 285 VQ--VVSIKDYFLEFEG------------DPHCLRDVQKFLVECFRGKRRD--QQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp TT--TCCGGGTCTTCCS------------CTTCHHHHHHHHHHHHHTTCSS--CC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred cc--ccchhhcCccccC------------CCCCHHHHHHHHHHHHHHhhcc--cCCCceEEEEEecCCchhHHHHHHHHH
Confidence 87 7899999999984 2235789999999999988761 114678999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q psy12099 161 DIIQRMHLRQYELL 174 (174)
Q Consensus 161 ~~i~~~~~~~~~l~ 174 (174)
+.|++++|++ ||+
T Consensus 349 ~~i~~~~l~~-~l~ 361 (362)
T 1zcb_A 349 DTILHDNLKQ-LML 361 (362)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHh-hcc
Confidence 9999999999 885
No 5
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=6.8e-37 Score=249.36 Aligned_cols=157 Identities=46% Similarity=0.802 Sum_probs=139.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||+++|++|.+||++++++|||+|+++||+++.|+...+++.++..||..+++++++.++|++||+||+|++.++
T Consensus 197 iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~k 276 (353)
T 1cip_A 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEK 276 (353)
T ss_dssp EEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred EEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhh
Confidence 69999999999999999999999999999999999999999999999999999999998888999999999999999988
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. ..+++.+||+|.+. .+.++|.+|+..+|.++++. ...+.+++|+|||+++.||+++|.++.
T Consensus 277 i~--~~~l~~~fp~~~g~-------------~~~~e~~~~~~~~f~~l~~~--~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 277 IK--KSPLTICYPEYAGS-------------NTYEEAAAYIQCQFEDLNKR--KDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp HT--TSCGGGTCTTCCSC-------------SCHHHHHHHHHHHHHTTCSC--TTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cc--ccchhhcccccCCC-------------CCHHHHHHHHHHHHHHhhcc--cCCCceEEEEEECcCchhHHHHHHHHH
Confidence 87 68999999999852 25789999999999998752 134679999999999999999999999
Q ss_pred HHHHHhhhhhccCC
Q psy12099 161 DIIQRMHLRQYELL 174 (174)
Q Consensus 161 ~~i~~~~~~~~~l~ 174 (174)
+.|++++++++||+
T Consensus 340 ~~i~~~~l~~~~l~ 353 (353)
T 1cip_A 340 DVIIKNNLKDCGLF 353 (353)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999985
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=6.4e-36 Score=243.66 Aligned_cols=163 Identities=33% Similarity=0.541 Sum_probs=138.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|||||||+++|++|.+||++++++|||+|+++|||++.|+.+.++|+++..||+.+++++.+.++|++|||||+|++.++
T Consensus 187 iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k 266 (354)
T 2xtz_A 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKK 266 (354)
T ss_dssp EEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred EEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhh
Confidence 69999999999999999999999999999999999999999999999999999999998878899999999999999888
Q ss_pred Hhccccch--hhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCC---CCcceeeeecccccchhHHHH
Q psy12099 81 VKAGKSRL--EDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGD---GKHYCYPHFTCAVDTENIRRV 155 (174)
Q Consensus 81 ~~~~~~~l--~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~---~~~~~~~~~tsA~d~~~i~~~ 155 (174)
+. ..++ .+|||+|.+... | +.++++|.+|+.++|.++++.... ..+.+++|+|||++++||+++
T Consensus 267 ~~--~v~l~~~~~fp~y~~~~~--------~-~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~v 335 (354)
T 2xtz_A 267 VL--DVPLNVCEWFRDYQPVSS--------G-KQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT 335 (354)
T ss_dssp TT--TSCGGGSGGGTTCCCCSS--------H-HHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHH
T ss_pred cc--cccccccccccccccccC--------C-CcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHH
Confidence 75 3444 456999973110 2 346889999999999988431111 135678899999999999999
Q ss_pred HHHHHHHHHHhhhhhccCC
Q psy12099 156 FNDCRDIIQRMHLRQYELL 174 (174)
Q Consensus 156 f~~~~~~i~~~~~~~~~l~ 174 (174)
|.++.+.|++++++.+||+
T Consensus 336 F~~v~~~I~~~~l~~~~l~ 354 (354)
T 2xtz_A 336 FKLVDETLRRRNLLEAGLL 354 (354)
T ss_dssp HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 9999999999999999985
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=1e-23 Score=160.99 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=91.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++|++++..||++++++|+|||+ ++.++|+.+..|+..+.... .+++|++|||||+|+..++
T Consensus 66 iwDtaGqe~~~~l~~~~~~~a~~~ilv~di----------~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 66 LWDTAGLERFRSLIPSYIRDSAAAVVVYDI----------TNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp EECCSCTTTCGGGHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGC
T ss_pred EEECCCchhhhhHHHHHhccccEEEEEeec----------chhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcC
Confidence 699999999999999999999999999999 89999999999999986653 3679999999999997653
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. +.+++.+|... ..+.+++|||++|.||+++|+.|+
T Consensus 135 ~V------------------------------~~~e~~~~a~~-------------~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 135 QV------------------------------SIEEGERKAKE-------------LNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------cHHHHhhHHHH-------------hCCeeEEEeCCCCcCHHHHHHHHH
Confidence 22 13345544321 236688999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.|.+
T Consensus 172 ~~i~~ 176 (216)
T 4dkx_A 172 AALPG 176 (216)
T ss_dssp HHC--
T ss_pred HHHHh
Confidence 88764
No 8
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.82 E-value=3.7e-20 Score=136.50 Aligned_cols=116 Identities=22% Similarity=0.366 Sum_probs=89.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++..|..|+++++++|+|+|+ ++..++.+...|+..++......+.|++|++||+|+..+.
T Consensus 64 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDS----------ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp EEECSSCGGGHHHHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EEECCCCHHHHHHHHHHhCCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 699999999999999999999999999999 7889999999999998776556789999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.+ .+.. ...+.+.+++|||+++.||+++|+++.
T Consensus 134 ~~---~~~~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 134 PA---SEIAEGL----------------------------------NLHT---IRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CH---HHHHHHh----------------------------------Cchh---ccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 10 0111110 0111 223457789999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 174 ~~~~~~ 179 (181)
T 1fzq_A 174 KNVNAK 179 (181)
T ss_dssp HTC---
T ss_pred HHHHhc
Confidence 877543
No 9
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.82 E-value=7.2e-20 Score=131.76 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=89.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++.+++.....|+..++......+.|++|++||+|+..+.
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 117 (164)
T 1r8s_A 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117 (164)
T ss_dssp EEECCCCGGGHHHHHHHTTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEEcCCChhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC
Confidence 699999999999999999999999999999 7889999999999998877666789999999999996531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
..++.....+ ... ...+.+.++++||+++.||+++|+++.
T Consensus 118 ------~~~~~~~~~~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 118 ------NAAEITDKLG-------------------------------LHS---LRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp ------CHHHHHHHTT-------------------------------GGG---CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ------CHHHHHHHhC-------------------------------ccc---ccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 1111100000 000 223456788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 158 ~~i~~~ 163 (164)
T 1r8s_A 158 NQLRNQ 163 (164)
T ss_dssp HHC---
T ss_pred HHHhhc
Confidence 887543
No 10
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.81 E-value=2.2e-19 Score=129.91 Aligned_cols=116 Identities=17% Similarity=0.272 Sum_probs=91.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..++......+.|++|++||+|+..+.
T Consensus 55 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 55 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDS----------CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp EEEECCCGGGGGGGGGGCTTCSEEEEEEET----------TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCCChhhhHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 699999999999999999999999999999 7888999999999999887656789999999999996531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.+ .... .....+.++++||+++.||+++|+++.
T Consensus 125 ~~---~~~~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 125 TS---SEMANSL----------------------------------GLPA---LKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp CH---HHHHHHH----------------------------------TGGG---CTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CH---HHHHHHh----------------------------------Cchh---ccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 00 0111100 0000 223457888999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 887643
No 11
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.80 E-value=1.4e-19 Score=133.68 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=86.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||++++.+|..|+++++++|+|+|+++.... .+..++.....|+..+. ....+.|++||+||+|+..+.
T Consensus 78 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~----~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~ 151 (198)
T 3t1o_A 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR----ANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDAL 151 (198)
T ss_dssp EEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHH----HHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCC
T ss_pred EEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhh----HhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhccccc
Confidence 699999999999999999999999999999210000 04566777777777762 234689999999999986531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~~ 159 (174)
. .+++.++. ....+ .++++||+++.||+++|+++
T Consensus 152 -~-------------------------------~~~~~~~~-------------~~~~~~~~~~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 152 -P-------------------------------VEMVRAVV-------------DPEGKFPVLEAVATEGKGVFETLKEV 186 (198)
T ss_dssp -C-------------------------------HHHHHHHH-------------CTTCCSCEEECBGGGTBTHHHHHHHH
T ss_pred -C-------------------------------HHHHHHHH-------------HhcCCceEEEEecCCCcCHHHHHHHH
Confidence 1 12233331 12234 78899999999999999999
Q ss_pred HHHHHHhhh
Q psy12099 160 RDIIQRMHL 168 (174)
Q Consensus 160 ~~~i~~~~~ 168 (174)
.+.++++..
T Consensus 187 ~~~i~~~~~ 195 (198)
T 3t1o_A 187 SRLVLARVA 195 (198)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999987654
No 12
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.80 E-value=1.2e-19 Score=135.73 Aligned_cols=124 Identities=18% Similarity=0.325 Sum_probs=87.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||++++.+|..|+++++++|+|+|+ ++..++.+...|+..+++.....+.|++|++||+|+..+
T Consensus 73 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~- 141 (198)
T 1f6b_A 73 TFDLGGHIQARRVWKNYLPAINGIVFLVDC----------ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA- 141 (198)
T ss_dssp EEEECC----CCGGGGGGGGCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-
T ss_pred EEECCCcHhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-
Confidence 699999999999999999999999999999 889999999999999987655678999999999999752
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. ...+.+++.... ..++.++.+. .. ...+.+.+++|||+++.||+++|+++.
T Consensus 142 ~~--~~~~~~~~~~~~----~~~~~~~~~~------------------~~---~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 142 IS--EERLREMFGLYG----QTTGKGSVSL------------------KE---LNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp CC--HHHHHHHHTCTT----TCCCSSCCCT------------------TT---CCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred CC--HHHHHHHhCccc----cccccccccc------------------cc---ccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 11 223344433322 0111110000 00 012457789999999999999999987
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 195 ~~ 196 (198)
T 1f6b_A 195 QY 196 (198)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 13
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.79 E-value=3e-19 Score=131.88 Aligned_cols=117 Identities=18% Similarity=0.287 Sum_probs=92.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++.+++.....|+..++......+.|+++++||+|+..+.
T Consensus 70 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 139 (189)
T 2x77_A 70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDS----------TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA 139 (189)
T ss_dssp EEEECCSSSSCCCCSSSSTTCCEEEEEEET----------TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHhhcCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence 699999999999999999999999999999 7888999999999999887666789999999999996531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+... ... ...+.+.++++||+++.||+++|+++.
T Consensus 140 ~~---~~~~~~~~----------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 140 SE---AEIAEQLG----------------------------------VSS---IMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp CH---HHHHHHTT----------------------------------GGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CH---HHHHHHhC----------------------------------hhh---ccCCceEEEEccCCCccCHHHHHHHHH
Confidence 00 01111100 000 223456789999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.++.
T Consensus 180 ~~i~~~~ 186 (189)
T 2x77_A 180 ERLREQG 186 (189)
T ss_dssp HHHHHTC
T ss_pred HHHHhcc
Confidence 9887653
No 14
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.79 E-value=1.5e-19 Score=130.39 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=75.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++|++||+|+..++
T Consensus 53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 53 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSV----------TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp EEECC---------------CCEEEEEEET----------TCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred EEECCCCccchhhhhhhhhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 699999999999999999999999999999 8899999999999998876556789999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. ...+.++++||+++.||+++|+++.
T Consensus 123 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 123 EV------------------------------SVDEGRACAV-------------VFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HhCCcEEEeccCCCCCHHHHHHHHH
Confidence 11 1122222211 1235788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+..+
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 15
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.79 E-value=3e-19 Score=132.65 Aligned_cols=119 Identities=20% Similarity=0.347 Sum_probs=90.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.+...|+..+++.....+.|++|++||+|+..+
T Consensus 71 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~- 139 (190)
T 1m2o_B 71 TFDLGGHIQARRLWKDYFPEVNGIVFLVDA----------ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA- 139 (190)
T ss_dssp EEECCCSGGGTTSGGGGCTTCCEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEEEEEC----------CChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-
Confidence 699999999999999999999999999999 889999999999999987655678999999999999752
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ...+.+++..... .+.|. + +..+.+.+++|||+++.||+++|+++.
T Consensus 140 ~~--~~~~~~~~~~~~~--------~~~~~-----------------~-----~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 140 VS--EAELRSALGLLNT--------TGSQR-----------------I-----EGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp CC--HHHHHHHTTCSSC--------CC--------------------C-----CSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred CC--HHHHHHHhCCccc--------ccccc-----------------c-----cccceEEEEEeECCcCCCHHHHHHHHH
Confidence 11 1233333322210 00010 0 123457789999999999999999987
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 188 ~~ 189 (190)
T 1m2o_B 188 QY 189 (190)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 16
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.79 E-value=4.7e-19 Score=130.39 Aligned_cols=116 Identities=22% Similarity=0.333 Sum_probs=91.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.+...|+..++......+.|+++++||+|+..+.
T Consensus 66 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 66 IWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp EEEECCSHHHHTTGGGGCTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 699999999999999999999999999999 8899999999999999887666789999999999996531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.+ .... .....+.++++||+++.||+++|+++.
T Consensus 136 ~~---~~~~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 136 SC---NAIQEAL----------------------------------ELDS---IRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CH---HHHHHHh----------------------------------Chhh---ccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 10 0111110 0000 223457889999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 176 ~~i~~~ 181 (186)
T 1ksh_A 176 DDISSR 181 (186)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 887654
No 17
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=1.8e-19 Score=133.61 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=91.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC-------CCCcEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL-------RTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~-------~~~~iilv~NK 73 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..++..... .+.|++||+||
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK 136 (199)
T 4bas_A 67 VFDMGGAKKFRGLWETYYDNIDAVIFVVDS----------SDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANK 136 (199)
T ss_dssp EEEECCSGGGGGGGGGGCTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEEC
T ss_pred EEECCCCHhHHHHHHHHHhcCCEEEEEEEC----------CcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEEC
Confidence 699999999999999999999999999999 8899999999999998776332 37899999999
Q ss_pred CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099 74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR 153 (174)
Q Consensus 74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~ 153 (174)
+|+..+. ...+. .+.+...+ + .....+.+++|||+++.||+
T Consensus 137 ~Dl~~~~------~~~~~--------------------------~~~~~~~~--~-----~~~~~~~~~~~Sa~~g~gv~ 177 (199)
T 4bas_A 137 MDAAGAK------TAAEL--------------------------VEILDLTT--L-----MGDHPFVIFASNGLKGTGVH 177 (199)
T ss_dssp TTSTTCC------CHHHH--------------------------HHHHTHHH--H-----HTTSCEEEEECBTTTTBTHH
T ss_pred cCCCCCC------CHHHH--------------------------HHHhcchh--h-----ccCCeeEEEEeeCCCccCHH
Confidence 9997542 11111 01110000 0 02345788999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy12099 154 RVFNDCRDIIQRMH 167 (174)
Q Consensus 154 ~~f~~~~~~i~~~~ 167 (174)
++|+++.+.+.++.
T Consensus 178 ~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 178 EGFSWLQETASRQS 191 (199)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988664
No 18
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=4.1e-19 Score=130.11 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=88.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.+...|+..+++.....+.|+++++||+|+..+.
T Consensus 66 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (183)
T 1moz_A 66 VWDLGGQTSIRPYWRCYYADTAAVIFVVDS----------TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 135 (183)
T ss_dssp EEEEC----CCTTGGGTTTTEEEEEEEEET----------TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC
Confidence 699999999999999999999999999999 7889999999999998876556789999999999996531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ...+.+.+... . .....+.++++||+++.||+++|+++.
T Consensus 136 -~--~~~i~~~~~~~----------------------------------~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 136 -S--ASEVSKELNLV----------------------------------E---LKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp -C--HHHHHHHTTTT----------------------------------T---CCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred -C--HHHHHHHhCcc----------------------------------c---ccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 0 11121111100 0 223456788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 176 ~~~~~~ 181 (183)
T 1moz_A 176 DVIKEE 181 (183)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 19
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.79 E-value=2.5e-19 Score=133.27 Aligned_cols=114 Identities=23% Similarity=0.399 Sum_probs=85.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..++......+.|++||+||+|+..+.
T Consensus 77 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 146 (192)
T 2b6h_A 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 146 (192)
T ss_dssp EEECC-----CTTHHHHHHTCCEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC
Confidence 699999999999999999999999999999 7889999999999999877666789999999999996531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
..++.....+ ... ...+.+.+++|||+++.||+++|+++.
T Consensus 147 ------~~~~i~~~~~-------------------------------~~~---~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 147 ------PVSELTDKLG-------------------------------LQH---LRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp ------CHHHHHHHTT-------------------------------GGG---CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ------CHHHHHHHhC-------------------------------ccc---ccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 1111111110 000 223456788999999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 187 ~~i~ 190 (192)
T 2b6h_A 187 HELS 190 (192)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 20
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=133.74 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=90.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~ 150 (201)
T 2hup_A 82 IWDTAGQERFRTITQSYYRSANGAILAYDI----------TKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELR 150 (201)
T ss_dssp EECCTTCGGGHHHHHHHHTTCSEEEEEEET----------TBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred EEECCCcHhHHHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCcccccc
Confidence 699999999999999999999999999999 78889998888988876543 3678999999999997532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~~ 159 (174)
.. ..+++.++... ..+ .+++|||+++.||+++|+++
T Consensus 151 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 151 EV------------------------------SLAEAQSLAEH-------------YDILCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCSEEEECBTTTTBSHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCCEEEEEeCCCCCCHHHHHHHH
Confidence 11 12233333211 124 67899999999999999999
Q ss_pred HHHHHHhh
Q psy12099 160 RDIIQRMH 167 (174)
Q Consensus 160 ~~~i~~~~ 167 (174)
.+.+.++.
T Consensus 188 ~~~i~~~~ 195 (201)
T 2hup_A 188 ATELIMRH 195 (201)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998653
No 21
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=7.4e-19 Score=129.65 Aligned_cols=114 Identities=19% Similarity=0.357 Sum_probs=85.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++.+++.....|+..+.......+.|++||+||+|+..+.
T Consensus 64 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (187)
T 1zj6_A 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDS----------TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133 (187)
T ss_dssp EEECCC----CGGGHHHHTTCCEEEEEEET----------TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC
Confidence 699999999999999999999999999999 7888999999999999876555689999999999996421
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ++..+++ .... .....+.++++||+++.||+++|+++.
T Consensus 134 ------~~--------------------------~~i~~~~-----~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 134 ------TV--------------------------AEISQFL-----KLTS---IKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp ------CH--------------------------HHHHHHH-----TGGG---CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ------CH--------------------------HHHHHHh-----Chhh---hcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 00 1111111 0110 123457888999999999999999999
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 174 ~~~~ 177 (187)
T 1zj6_A 174 SRLK 177 (187)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 22
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=5.4e-19 Score=129.86 Aligned_cols=112 Identities=19% Similarity=0.358 Sum_probs=87.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.+...|+..++......+.|++|++||+|+..+.
T Consensus 69 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 138 (181)
T 2h17_A 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDS----------TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 138 (181)
T ss_dssp EEEESSSGGGTCGGGGGGTTCCEEEEEEET----------TCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC
Confidence 699999999999999999999999999999 7889999999999998876555789999999999996521
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.+ .... .....+.++++||+++.||+++|+++.
T Consensus 139 ~~---~~i~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 139 TV---AEISQFL----------------------------------KLTS---IKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CH---HHHHHHh----------------------------------Cccc---ccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 00 1111111 0011 223456889999999999999999987
Q ss_pred HH
Q psy12099 161 DI 162 (174)
Q Consensus 161 ~~ 162 (174)
+.
T Consensus 179 ~~ 180 (181)
T 2h17_A 179 SR 180 (181)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.78 E-value=3.4e-19 Score=130.47 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=89.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..+++....|+..+.+.....+.|++|++||+|+..++
T Consensus 58 l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 58 LVDTAGQDEYSIFPQTYSIDINGYILVYSV----------TSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp EEECCCCCTTCCCCGGGTTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred EEeCCCchhhhHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc
Confidence 699999999999999999999999999999 8899999999999988776555689999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||.++|+++.
T Consensus 128 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 128 VI------------------------------SYEEGKALAES-------------WNAAFLESSAKENQTAVDVFRRII 164 (181)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTSHHHHHHHHHHHH
T ss_pred ee------------------------------cHHHHHHHHHH-------------hCCcEEEEecCCCCCHHHHHHHHH
Confidence 11 12233333221 235688999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.+.+
T Consensus 165 ~~~~~~~ 171 (181)
T 3t5g_A 165 LEAEKMD 171 (181)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9887653
No 24
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.78 E-value=7.6e-20 Score=147.00 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=78.9
Q ss_pred CeeCCCCchhhh---hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERR---KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN--RWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~---~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~--~~~~~~~iilv~NK~D 75 (174)
|||||||++|++ .+.+||++++++|+|+|+ ++. +.++..||..++.. ...+++|++|+|||+|
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di----------td~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~D 117 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDS----------QDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC----------SSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCC
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEEC----------Cch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcc
Confidence 699999999985 469999999999999999 555 55566666554432 1235799999999999
Q ss_pred hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099 76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV 155 (174)
Q Consensus 76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~ 155 (174)
+..+... ....++. ..+++.++ .+. +.....+.+++|||+| .||.++
T Consensus 118 L~~~~~R--~~~~R~V---------------------~~~~~~~l--------a~~-~~~~~~i~f~eTSAkd-~nV~eA 164 (331)
T 3r7w_B 118 GLSEDFK--VDAQRDI---------------------MQRTGEEL--------LEL-GLDGVQVSFYLTSIFD-HSIYEA 164 (331)
T ss_dssp SSCSHHH--HHHHHHH---------------------HHHHHHTT--------SSS-SCSCCCEEEECCCSSS-SHHHHH
T ss_pred cCchhhh--hhHHHHh---------------------hHHHHHHH--------Hhh-cccccCceEEEeccCC-CcHHHH
Confidence 9753211 0000000 00111111 000 0002468899999999 599999
Q ss_pred HHHHHHHHHH
Q psy12099 156 FNDCRDIIQR 165 (174)
Q Consensus 156 f~~~~~~i~~ 165 (174)
|..+...|+.
T Consensus 165 Fs~iv~~li~ 174 (331)
T 3r7w_B 165 FSRIVQKLIP 174 (331)
T ss_dssp HHHHHTTSST
T ss_pred HHHHHHHHHh
Confidence 9999977653
No 25
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=2.8e-19 Score=131.10 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=77.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..++|++||+||+|+..++
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDI----------TNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp EEEC---------CCTTTTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCC
T ss_pred EEcCCCChhhhhhHHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccC
Confidence 699999999999999999999999999999 78889998888888876542 3578999999999986432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|.++.
T Consensus 130 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 130 QV------------------------------SKERGEKLALD-------------YGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEECCC---CCHHHHHHHHH
T ss_pred cC------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 12233333221 225788999999999999999999
Q ss_pred HHHHHhhhh
Q psy12099 161 DIIQRMHLR 169 (174)
Q Consensus 161 ~~i~~~~~~ 169 (174)
+.+.++..+
T Consensus 167 ~~i~~~~~~ 175 (183)
T 2fu5_C 167 RDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999876544
No 26
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.78 E-value=7.8e-19 Score=129.89 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=89.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..++......+.|++||+||+|+..+.
T Consensus 71 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (188)
T 1zd9_A 71 LWDIGGQPRFRSMWERYCRGVSAIVYMVDA----------ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 140 (188)
T ss_dssp EEEECCSHHHHTTHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHHccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC
Confidence 699999999999999999999999999999 7889999999999999876555789999999999996531
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
...+...... ... .....+.++++||+++.||+++|+++.
T Consensus 141 ------~~~~~~~~~~-------------------------------~~~---~~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 141 ------DEKELIEKMN-------------------------------LSA---IQDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp ------CHHHHHHHTT-------------------------------GGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ------CHHHHHHHhC-------------------------------hhh---hccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 1011100000 000 123446778999999999999999998
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 181 ~~~~~ 185 (188)
T 1zd9_A 181 QHSKS 185 (188)
T ss_dssp HTCC-
T ss_pred HHHHh
Confidence 87644
No 27
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.77 E-value=3.9e-19 Score=128.50 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=84.9
Q ss_pred CeeCCCCchhhh-hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERR-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++.++. +|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++|++||+|+..+
T Consensus 55 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 55 VYDIWEQGDAGGWLQDHCLQTGDAFLIVFSV----------TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124 (169)
T ss_dssp EECCCCC--------CHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred EEECCCccccchhhhhhhhccCCEEEEEEEC----------CChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence 699999999987 889999999999999999 889999999999999887655568999999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. ..+++..+.. ...+.++++||+++.||+++|+++
T Consensus 125 ~~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 125 REV------------------------------SLEEGRHLAG-------------TLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp CCS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHH
T ss_pred ccC------------------------------CHHHHHHHHH-------------HcCCcEEEecCccCCCHHHHHHHH
Confidence 211 1222333321 123577899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988754
No 28
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=6.4e-19 Score=129.00 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=93.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus 70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 139 (187)
T 2a9k_A 70 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 139 (187)
T ss_dssp EEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC
T ss_pred EEECCCCcccHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC
Confidence 699999999999999999999999999999 7889999999998888776555589999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 140 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 176 (187)
T 2a9k_A 140 QV------------------------------SVEEAKNRAEQ-------------WNVNYVETSAKTRANVDKVFFDLM 176 (187)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCeEEEeCCCCCCCHHHHHHHHH
Confidence 11 12233333221 235688999999999999999999
Q ss_pred HHHHHhhhh
Q psy12099 161 DIIQRMHLR 169 (174)
Q Consensus 161 ~~i~~~~~~ 169 (174)
+.+.++..+
T Consensus 177 ~~i~~~~~~ 185 (187)
T 2a9k_A 177 REIRARKME 185 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhhcc
Confidence 999876543
No 29
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.77 E-value=6.1e-19 Score=131.75 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=89.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.......++|++||+||+|+..++
T Consensus 76 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 3oes_A 76 LVDTAGQDEYSILPYSFIIGVHGYVLVYSV----------TSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPER 145 (201)
T ss_dssp EEEECCCCTTCCCCGGGTTTCCEEEEEEET----------TCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGC
T ss_pred EEECCCccchHHHHHHHHhcCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccc
Confidence 699999999999999999999999999999 8899999999999998876555689999999999997543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 146 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 146 EV------------------------------QAVEGKKLAES-------------WGATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEECCTTCHHHHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------hCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 11223333211 225678999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.+..
T Consensus 183 ~~i~~~~ 189 (201)
T 3oes_A 183 QEIARVE 189 (201)
T ss_dssp HHHHHC-
T ss_pred HHHHhhh
Confidence 9987653
No 30
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.77 E-value=4.2e-19 Score=132.56 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=89.5
Q ss_pred CeeCCCCchhhh-hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERR-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++. +|..|+++++++|+|+|+ ++..++.....|+..+.......++|++|++||+|+..+
T Consensus 76 i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 76 VYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV----------TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp EECCCCCSGGGHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred EEecCCCccchhhhHHHhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 699999998876 899999999999999999 889999999999988876544457999999999999653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. ..+++..+... ..+.+++|||+++.||+++|+++
T Consensus 146 ~~v------------------------------~~~~~~~~a~~-------------~~~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 146 REV------------------------------SLEEGRHLAGT-------------LSCKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp CCS------------------------------CHHHHHHHHHH-------------TTCEEEEEBTTTTBSHHHHHHHH
T ss_pred CCc------------------------------CHHHHHHHHHH-------------hCCEEEEEcCCCCCCHHHHHHHH
Confidence 211 12223333211 12567899999999999999999
Q ss_pred HHHHHHhh
Q psy12099 160 RDIIQRMH 167 (174)
Q Consensus 160 ~~~i~~~~ 167 (174)
.+.+..+.
T Consensus 183 ~~~i~~~~ 190 (195)
T 3cbq_A 183 VRQIRLRR 190 (195)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 99886543
No 31
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=3e-19 Score=130.97 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=90.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++|++||+|+..++
T Consensus 70 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSV----------TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 139 (183)
T ss_dssp EEECCSCGGGCSSHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred EEECCCchhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc
Confidence 599999999999999999999999999999 8899999999998888765455688999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc-cchhHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV-DTENIRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~-d~~~i~~~f~~~ 159 (174)
.. ..+++..+... ..+.++++||+ ++.||+++|+++
T Consensus 140 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 140 KV------------------------------TRDQGKEMATK-------------YNIPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred Cc------------------------------CHHHHHHHHHH-------------hCCeEEEeccCCCCCCHHHHHHHH
Confidence 11 12223333221 12568899999 999999999999
Q ss_pred HHHHHH
Q psy12099 160 RDIIQR 165 (174)
Q Consensus 160 ~~~i~~ 165 (174)
.+.+.+
T Consensus 177 ~~~i~~ 182 (183)
T 3kkq_A 177 VRVIRQ 182 (183)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998875
No 32
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.77 E-value=4.5e-19 Score=127.38 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=87.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|+++++||+|+..++
T Consensus 56 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 56 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp EEECCC---CHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred EEECCCcchhHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence 699999999999999999999999999999 7889999999998888776555689999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 126 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 126 QV------------------------------SVEEAKNRADQ-------------WNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCeEEEeCCCCCCCHHHHHHHHH
Confidence 11 12233333221 125688999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 163 ~~i~~ 167 (168)
T 1u8z_A 163 REIRA 167 (168)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.77 E-value=1.1e-18 Score=128.43 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=91.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus 74 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 143 (195)
T 3bc1_A 74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDL----------TNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR 143 (195)
T ss_dssp EEEECCSGGGHHHHHHTTTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC
T ss_pred EEeCCCcHHHHHHHHHHHcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 7888999888999888766544689999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+.++... ..+.++++||+++.||+++|+++.
T Consensus 144 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 144 AV------------------------------KEEEARELAEK-------------YGIPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCCEEEEECCCCCCHHHHHHHHH
Confidence 11 01223333211 125678999999999999999999
Q ss_pred HHHHHhhh
Q psy12099 161 DIIQRMHL 168 (174)
Q Consensus 161 ~~i~~~~~ 168 (174)
+.+.++..
T Consensus 181 ~~~~~~~~ 188 (195)
T 3bc1_A 181 DLIMKRME 188 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987643
No 34
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.77 E-value=7.7e-19 Score=130.11 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=90.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 74 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~ 142 (191)
T 2a5j_A 74 IWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRR 142 (191)
T ss_dssp EECCTTGGGTSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred EEECCCchhhhhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCcc
Confidence 699999999999999999999999999999 78889998888888876542 3578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 143 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 143 DV------------------------------KREEGEAFARE-------------HGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 12233333221 225688999999999999999999
Q ss_pred HHHHHhhh
Q psy12099 161 DIIQRMHL 168 (174)
Q Consensus 161 ~~i~~~~~ 168 (174)
+.+.++..
T Consensus 180 ~~i~~~~~ 187 (191)
T 2a5j_A 180 KEIYRKIQ 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
No 35
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=127.79 Aligned_cols=114 Identities=22% Similarity=0.327 Sum_probs=89.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL--RTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~--~~~~iilv~NK~Dl~~ 78 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..++..... .+.|++||+||+|+..
T Consensus 71 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDS----------SDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp EEEECCSTTTGGGGGGGGGGCSEEEEEEET----------TCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 699999999999999999999999999999 7889999999999999877555 6899999999999964
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
+. . .++..+++ .+.. .....+.++++||+++.||+++|++
T Consensus 141 ~~------~--------------------------~~~~~~~~-----~~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~ 180 (190)
T 2h57_A 141 AV------T--------------------------SVKVSQLL-----CLEN---IKDKPWHICASDAIKGEGLQEGVDW 180 (190)
T ss_dssp CC------C--------------------------HHHHHHHH-----TGGG---CCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred CC------C--------------------------HHHHHHHh-----Chhh---ccCCceEEEEccCCCCcCHHHHHHH
Confidence 21 1 11111111 1111 1224578889999999999999999
Q ss_pred HHHHHH
Q psy12099 159 CRDIIQ 164 (174)
Q Consensus 159 ~~~~i~ 164 (174)
+.+.+.
T Consensus 181 l~~~i~ 186 (190)
T 2h57_A 181 LQDQIQ 186 (190)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 988764
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.77 E-value=8.1e-19 Score=127.83 Aligned_cols=114 Identities=19% Similarity=0.169 Sum_probs=91.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+++.....+.|++|++||+|+..++
T Consensus 61 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 130 (181)
T 2fn4_A 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAI----------NDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR 130 (181)
T ss_dssp EEECCCTTTTSCCHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred EEECCCchhhHHHHHHHHhhCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 7889999999999888665555678999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||+++|+++.
T Consensus 131 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 131 QV------------------------------PRSEASAFGA-------------SHHVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 0122333311 1235788999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.+..
T Consensus 168 ~~~~~~~ 174 (181)
T 2fn4_A 168 RAVRKYQ 174 (181)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9987654
No 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=9.8e-19 Score=128.39 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=87.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|+++++||+|+....
T Consensus 56 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT 125 (189)
T ss_dssp EEECCCC---CTTHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred EEECCCcHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc
Confidence 599999999999999999999999999999 8899999999999888776556689999999999986422
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+.+..+... ..+.++++||+++.||+++|+++.
T Consensus 126 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 126 VD-------------------------------TKQAQDLARS-------------YGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp SC-------------------------------HHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred cC-------------------------------HHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 1222222111 125678999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.+..
T Consensus 162 ~~~~~~~ 168 (189)
T 4dsu_A 162 REIRKHK 168 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9987653
No 38
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=9.7e-19 Score=129.15 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=90.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++||+||+|+....
T Consensus 68 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~ 137 (195)
T 1x3s_A 68 IWDTAGQERFRTLTPSYYRGAQGVILVYDV----------TRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE 137 (195)
T ss_dssp EEEECSSGGGCCSHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC
T ss_pred EEeCCCchhhhhhhHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc
Confidence 699999999999999999999999999999 7888998888998888765445678999999999984321
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
+. .+++..+... ..+.++++||+++.||+++|+++.
T Consensus 138 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 138 VD-------------------------------RNEGLKFARK-------------HSMLFIEASAKTCDGVQCAFEELV 173 (195)
T ss_dssp SC-------------------------------HHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cC-------------------------------HHHHHHHHHH-------------cCCEEEEecCCCCCCHHHHHHHHH
Confidence 11 2233333221 235688999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.+.
T Consensus 174 ~~~~~~ 179 (195)
T 1x3s_A 174 EKIIQT 179 (195)
T ss_dssp HHHHTS
T ss_pred HHHHhh
Confidence 988754
No 39
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=4.7e-19 Score=129.31 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=79.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus 64 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDV----------TNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp EEECCCC--------CCGGGCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCC
T ss_pred EEeCCCcHHHHHHHHHHccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCccc
Confidence 699999999999999999999999999999 78888888888888876543 2578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 133 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 133 VV------------------------------KREDGEKLAKE-------------YGLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 11223333211 125678999999999999999999
Q ss_pred HHHHHhhh
Q psy12099 161 DIIQRMHL 168 (174)
Q Consensus 161 ~~i~~~~~ 168 (174)
+.+.++..
T Consensus 170 ~~~~~~~~ 177 (180)
T 2g6b_A 170 KELKRRSM 177 (180)
T ss_dssp HHHHC---
T ss_pred HHHHHHhc
Confidence 98876543
No 40
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=129.35 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=92.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus 66 l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (206)
T 2bov_A 66 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 135 (206)
T ss_dssp EEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC
T ss_pred EEcCCChhhhHHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc
Confidence 699999999999999999999999999999 7889999999999988776545689999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|.++.
T Consensus 136 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 136 QV------------------------------SVEEAKNRAEQ-------------WNVNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred cc------------------------------cHHHHHHHHHH-------------hCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 12233333321 125688999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+..+.
T Consensus 173 ~~i~~~~ 179 (206)
T 2bov_A 173 REIRARK 179 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 9988754
No 41
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.76 E-value=1.2e-18 Score=129.82 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=83.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~ 78 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+..... ..+.|++||+||+|+..
T Consensus 77 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDV----------SSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp EEETTTTHHHHHHHSTTCCCCCEEEEEEET----------TCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred EEECCCcHHHHHHHHHHHhhCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 699999999999999999999999999999 788999999999888876533 25789999999999976
Q ss_pred -HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc-chhHHHHH
Q psy12099 79 -EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD-TENIRRVF 156 (174)
Q Consensus 79 -~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d-~~~i~~~f 156 (174)
++.. ..+++.++... ..+.++++||++ +.||+++|
T Consensus 147 ~~~~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~gi~~l~ 183 (208)
T 2yc2_C 147 QRHQV------------------------------RLDMAQDWATT-------------NTLDFFDVSANPPGKDADAPF 183 (208)
T ss_dssp ---CC------------------------------CHHHHHHHHHH-------------TTCEEEECCC-------CHHH
T ss_pred hhccC------------------------------CHHHHHHHHHH-------------cCCEEEEeccCCCCcCHHHHH
Confidence 2211 12233443221 226788999999 99999999
Q ss_pred HHHHHHHHHhhhhh
Q psy12099 157 NDCRDIIQRMHLRQ 170 (174)
Q Consensus 157 ~~~~~~i~~~~~~~ 170 (174)
+++.+.+.+...+.
T Consensus 184 ~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 184 LSIATTFYRNYEDK 197 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888665443
No 42
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.76 E-value=1.3e-18 Score=126.84 Aligned_cols=117 Identities=12% Similarity=0.090 Sum_probs=80.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~ 77 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... ...+.|++|++||+|+.
T Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDV----------TNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp EECCC----------CCSTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred EEECCCChHhhhhhHHHhhcCCEEEEEEEC----------CChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 699999999999999999999999999999 78888888888888776542 23678999999999995
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
..... . ..+++..+... ...+.++++||+++.||+++|+
T Consensus 132 ~~~~~---v--------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 132 ESKKI---V--------------------------SEKSAQELAKS------------LGDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp GGGCC---S--------------------------CHHHHHHHHHH------------TTSCCEEEEBTTTTBSHHHHHH
T ss_pred ccccc---C--------------------------CHHHHHHHHHh------------cCCCeEEEEecCCCCCHHHHHH
Confidence 43211 0 11223333210 1235678999999999999999
Q ss_pred HHHHHHHHhhh
Q psy12099 158 DCRDIIQRMHL 168 (174)
Q Consensus 158 ~~~~~i~~~~~ 168 (174)
++.+.+++++.
T Consensus 171 ~l~~~~~~~~~ 181 (182)
T 1ky3_A 171 EIARSALQQNQ 181 (182)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhc
Confidence 99999987653
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.76 E-value=5.4e-19 Score=128.74 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=86.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC-CCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR-WLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~-~~~~~~-iilv~NK~Dl~~ 78 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ...+.| ++|++||+|+..
T Consensus 60 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 60 IWDIGGQTIGGKMLDKYIYGAQGVLLVYDI----------TNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp EEECTTCCTTCTTHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred EEECCCCccccchhhHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 699999999999999999999999999999 78888888888877765421 112344 899999999965
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
++.. ..+++..+... ..+.++++||+++.||+++|++
T Consensus 130 ~~~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~ 166 (178)
T 2hxs_A 130 MRTI------------------------------KPEKHLRFCQE-------------NGFSSHFVSAKTGDSVFLCFQK 166 (178)
T ss_dssp GCSS------------------------------CHHHHHHHHHH-------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred cccc------------------------------CHHHHHHHHHH-------------cCCcEEEEeCCCCCCHHHHHHH
Confidence 3211 12233333221 1256789999999999999999
Q ss_pred HHHHHHHhhh
Q psy12099 159 CRDIIQRMHL 168 (174)
Q Consensus 159 ~~~~i~~~~~ 168 (174)
+.+.+.+..+
T Consensus 167 l~~~~~~~~~ 176 (178)
T 2hxs_A 167 VAAEILGIKL 176 (178)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHHhhhh
Confidence 9998876543
No 44
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=127.37 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=90.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++|++||+|+...+
T Consensus 78 i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~----------~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~ 146 (193)
T 2oil_A 78 IWDTAGLERYRAITSAYYRGAVGALLVFDL----------TKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAR 146 (193)
T ss_dssp EEEESCCCTTCTTHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGC
T ss_pred EEeCCCchhhhhhhHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCccccc
Confidence 699999999999999999999999999999 78888888888888876543 3578999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||+++|+++.
T Consensus 147 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 147 EV------------------------------PTEEARMFAE-------------NNGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 1223333321 1235788999999999999999999
Q ss_pred HHHHHhhh
Q psy12099 161 DIIQRMHL 168 (174)
Q Consensus 161 ~~i~~~~~ 168 (174)
+.++++..
T Consensus 184 ~~i~~~~~ 191 (193)
T 2oil_A 184 KEIFAKVS 191 (193)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987644
No 45
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.76 E-value=2.2e-18 Score=126.46 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=89.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus 63 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~ 131 (186)
T 2bme_A 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADR 131 (186)
T ss_dssp EEEECCSGGGHHHHHTTSTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred EEeCCCcHHHHHHHHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 78889988888887765432 2578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||+++|+++.
T Consensus 132 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 132 EV------------------------------TFLEASRFAQ-------------ENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCEEEEecCCCCCCHHHHHHHHH
Confidence 11 1223333321 1236788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++++
T Consensus 169 ~~~~~~ 174 (186)
T 2bme_A 169 RKILNK 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 46
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2e-18 Score=131.03 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=87.5
Q ss_pred CeeCCCCch-hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRD-ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~-~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++. ++.++..||++++++|+|||+ ++..+|.....|+..+.......++|++||+||+|+..+
T Consensus 91 ~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv----------t~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 160 (211)
T 2g3y_A 91 LLDMWENKGENEWLHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 160 (211)
T ss_dssp EECCTTTTHHHHHHHHCCCCCCSEEEEEEET----------TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred EeecCCCcchhhhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence 599999988 677888999999999999999 899999999889888765433457999999999999653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. . .+++..+.. ...+.+++|||+++.||+++|+++
T Consensus 161 r~v----~--------------------------~~e~~~~a~-------------~~~~~~~e~SAk~g~~v~elf~~l 197 (211)
T 2g3y_A 161 REV----S--------------------------VSEGRACAV-------------VFDCKFIETSAAVQHNVKELFEGI 197 (211)
T ss_dssp CCS----C--------------------------HHHHHHHHH-------------HHTCEEEECBTTTTBSHHHHHHHH
T ss_pred ceE----e--------------------------HHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHH
Confidence 211 1 122222211 112567899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.+..+
T Consensus 198 ~~~i~~~ 204 (211)
T 2g3y_A 198 VRQVRLR 204 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988644
No 47
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.76 E-value=1.4e-18 Score=131.49 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=89.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.. ...|+..+... ..++|++||+||+|+..+
T Consensus 79 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI----------SRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGC
T ss_pred EEECCCCHhHHHHHHHHcCCCeEEEEEEEC----------cCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence 699999999999999999999999999999 88999998 46676666544 257999999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchh-HHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTEN-IRRVFN 157 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~-i~~~f~ 157 (174)
... ...+. ..... .-..+++..+... ..+ .+++|||+++.| |+++|+
T Consensus 147 ~~~--~~~~~---~~~~~-------------~v~~~~~~~~~~~-------------~~~~~~~e~SA~~g~g~v~~lf~ 195 (214)
T 3q3j_B 147 LST--LMELS---HQKQA-------------PISYEQGCAIAKQ-------------LGAEIYLEGSAFTSEKSIHSIFR 195 (214)
T ss_dssp HHH--HHHHH---HTTCC-------------CCCHHHHHHHHHH-------------HTCSEEEECCTTTCHHHHHHHHH
T ss_pred hhh--hhhhc---ccccC-------------ccCHHHHHHHHHH-------------cCCCEEEEeccCCCcccHHHHHH
Confidence 221 00000 00000 0123344444321 224 678999999998 999999
Q ss_pred HHHHHHHHh
Q psy12099 158 DCRDIIQRM 166 (174)
Q Consensus 158 ~~~~~i~~~ 166 (174)
.+.+.++.+
T Consensus 196 ~l~~~~~~~ 204 (214)
T 3q3j_B 196 TASMLCLNK 204 (214)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcc
Confidence 999988755
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2e-18 Score=129.68 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=89.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 79 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~ 147 (201)
T 2ew1_A 79 IWDTAGQERFRSITQSYYRSANALILTYDI----------TCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERR 147 (201)
T ss_dssp EEEECCSGGGHHHHGGGSTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred EEECCCcHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence 699999999999999999999999999999 78889988888888775432 3578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 148 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 148 EV------------------------------SQQRAEEFSEA-------------QDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp SS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 11223333211 225678999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+..+.
T Consensus 185 ~~i~~~~ 191 (201)
T 2ew1_A 185 CRLISEA 191 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=1.8e-18 Score=124.08 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=89.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|+++++||+|+..++
T Consensus 55 l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1kao_A 55 ILDTAGTEQFASMRDLYIKNGQGFILVYSL----------VNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124 (167)
T ss_dssp EEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred EEECCCchhhHHHHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc
Confidence 699999999999999999999999999999 7888999999999888776555689999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 125 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 125 EV------------------------------SSSEGRALAEE-------------WGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTSCEEEECTTCHHHHHHHHHHHH
T ss_pred cC------------------------------CHHHHHHHHHH-------------hCCCEEEecCCCCcCHHHHHHHHH
Confidence 11 01223333211 124678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87753
No 50
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=125.71 Aligned_cols=115 Identities=20% Similarity=0.184 Sum_probs=91.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+... ..+.|++||+||+|+..++
T Consensus 62 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERK 129 (181)
T ss_dssp EEEETTGGGCSSCCGGGGTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGC
T ss_pred EEcCCCchhhhhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhc
Confidence 699999999999999999999999999999 7889999988888887654 3578999999999987643
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+... ..+.++++||+++.||+++|+++.
T Consensus 130 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 130 VV------------------------------ETEDAYKFAGQ-------------MGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCCEEECBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence 21 01222332211 124678999999999999999999
Q ss_pred HHHHHhhhhh
Q psy12099 161 DIIQRMHLRQ 170 (174)
Q Consensus 161 ~~i~~~~~~~ 170 (174)
+.+.+...+.
T Consensus 167 ~~~~~~~~~~ 176 (181)
T 3tw8_B 167 ELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9998765544
No 51
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=1.6e-18 Score=126.03 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=87.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus 68 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp EEECTTGGGTCHHHHHHHHTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred EEECCCChHhhhhHHHHhccCCEEEEEEeC----------cCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 78888888888888775542 3578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 137 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 137 DV------------------------------TYEEAKQFAEE-------------NGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 12333443221 235788999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+++
T Consensus 174 ~~i~~ 178 (179)
T 1z0f_A 174 KKIYQ 178 (179)
T ss_dssp HHHC-
T ss_pred HHHhh
Confidence 88754
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=124.97 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=82.4
Q ss_pred CeeCCCCch--hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRD--ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~--~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+|++. ++.++..|+++++++|+|+|+ ++..++.....|+..+.......+.|++|++||+|+..
T Consensus 56 ~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 56 VVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI----------ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp EECCC-------CHHHHHTTTSCSEEEEEEET----------TCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred EEecCCCCccchhhhHHhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 699999998 677888999999999999999 88999999989988887654456799999999999965
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
++.. ..+++..+... ..+.++++||+++.||+++|++
T Consensus 126 ~~~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~ 162 (175)
T 2nzj_A 126 CREV------------------------------SVEEGRACAVV-------------FDCKFIETSATLQHNVAELFEG 162 (175)
T ss_dssp TCCS------------------------------CHHHHHHHHHH-------------HTSEEEECBTTTTBSHHHHHHH
T ss_pred cccc------------------------------CHHHHHHHHHH-------------cCCeEEEEecCCCCCHHHHHHH
Confidence 3211 01223332211 1256789999999999999999
Q ss_pred HHHHHHHhh
Q psy12099 159 CRDIIQRMH 167 (174)
Q Consensus 159 ~~~~i~~~~ 167 (174)
+.+.+..+.
T Consensus 163 l~~~~~~~~ 171 (175)
T 2nzj_A 163 VVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987654
No 53
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.75 E-value=1.3e-18 Score=131.18 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=90.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~----------~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~ 157 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDL----------TSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 157 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEET----------TCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc
Confidence 699999999999999999999999999999 7889999888888887665444689999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 158 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 158 EV------------------------------NERQARELADK-------------YGIPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------CCCcEEEEECCCCCCHHHHHHHHH
Confidence 11 01223333211 225678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 195 ~~i~~~ 200 (217)
T 2f7s_A 195 DLIMKR 200 (217)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 54
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.75 E-value=2.6e-18 Score=123.76 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=86.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... .++.|++|++||+|+..++
T Consensus 59 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDI----------TNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKR 127 (170)
T ss_dssp EEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred EEeCCCcHHhhhhhHHhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCcccc
Confidence 699999999999999999999999999999 78889999888888876543 3578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++.. ...+.++++||+++.||+++|+++.
T Consensus 128 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 128 AV------------------------------DFQEAQSYAD-------------DNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 1223333321 1235788999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 165 ~~~ 167 (170)
T 1r2q_A 165 KKL 167 (170)
T ss_dssp HTS
T ss_pred HHH
Confidence 754
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.75 E-value=1.4e-18 Score=125.06 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=88.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|+++++||+|+..++
T Consensus 55 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 55 ILDTAGTEQFTAMRDLYMKNGQGFALVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124 (167)
T ss_dssp EEEECSSCSSTTHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred EEECCChHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 7888999888888888765445689999999999997542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ...+.++++||+++.||+++|+++.
T Consensus 125 ~~------------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 125 VV------------------------------GKEQGQNLARQ------------WCNCAFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp CS------------------------------CHHHHHHHHHH------------TTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred cC------------------------------CHHHHHHHHHH------------ccCCcEEEecCCCCCCHHHHHHHHH
Confidence 11 11223333211 0135688999999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 163 ~~i~ 166 (167)
T 1c1y_A 163 RQIN 166 (167)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8763
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=128.83 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=90.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 78 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~ 146 (200)
T 2o52_A 78 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPER 146 (200)
T ss_dssp EECCTTHHHHSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGC
T ss_pred EEcCCCcHhHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccc
Confidence 699999999999999999999999999999 78889998888888876543 2578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ...+.++++||+++.||+++|+++.
T Consensus 147 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 147 EV------------------------------TFLEASRFAQ-------------ENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 1223333321 1236788999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.++++.
T Consensus 184 ~~i~~~~ 190 (200)
T 2o52_A 184 RTILNKI 190 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 57
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=126.59 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=89.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 69 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDV----------TDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEEECCSGGGCTTHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTC
T ss_pred EEECCCcHhhhhhHHHHHhhCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 78889988888888875543 3578999999999986543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. ...+.++++||+++.||+++|+++.
T Consensus 138 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 138 VV------------------------------DYTTAKEFAD-------------SLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 11 1122222211 1225688999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.++.
T Consensus 175 ~~i~~~~ 181 (196)
T 3tkl_A 175 AEIKKRM 181 (196)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988653
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=126.87 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=90.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.+.. .|+..+... ..+.|++||+||+|+..+
T Consensus 72 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSV----------VSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLRED 139 (201)
T ss_dssp EEECCCSTTCSSSGGGGGTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGC
T ss_pred EEECCCCHHHHHHhHhhcCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhc
Confidence 699999999999999999999999999999 7889999887 677766543 247899999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.+. ... ....+++..+... . ..+.++++||+++.||+++|+++
T Consensus 140 ~~~--~~~~~~~---~~~-------------~v~~~~~~~~~~~-----~-------~~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 140 VKV--LIELDKC---KEK-------------PVPEEAAKLLAEE-----I-------KAASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp HHH--HHHHHTT---TCC-------------CCCHHHHHHHHHH-----H-------TCSEEEECCTTTCTTHHHHHHHH
T ss_pred hhh--hhhhccc---ccc-------------cCCHHHHHHHHHh-----c-------CCcEEEEEecCCCCCHHHHHHHH
Confidence 311 0111100 000 0113334444221 0 11367899999999999999999
Q ss_pred HHHHHHhh
Q psy12099 160 RDIIQRMH 167 (174)
Q Consensus 160 ~~~i~~~~ 167 (174)
.+.+++..
T Consensus 190 ~~~~~~~~ 197 (201)
T 2q3h_A 190 IVAGIQYS 197 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 99988654
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.75 E-value=2.5e-18 Score=126.89 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=79.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.+...|+..+.......+.|++||+||+|+....
T Consensus 73 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~ 142 (190)
T 3con_A 73 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT 142 (190)
T ss_dssp EEECCC-----------CTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC
T ss_pred EEECCChHHHHHHHHHhhCcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc
Confidence 699999999999999999999999999999 7888888888888877654434578999999999986521
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+++.++... ..+.++++||+++.|++++|+++.
T Consensus 143 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 143 VD-------------------------------TKQAHELAKS-------------YGIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp SC-------------------------------HHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CC-------------------------------HHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 1223333211 124678999999999999999999
Q ss_pred HHHHHhhhhhc
Q psy12099 161 DIIQRMHLRQY 171 (174)
Q Consensus 161 ~~i~~~~~~~~ 171 (174)
+.+.+...++.
T Consensus 179 ~~~~~~~~~~l 189 (190)
T 3con_A 179 REIRQYRMKKL 189 (190)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHhhc
Confidence 99987765543
No 60
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=2.7e-18 Score=126.94 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=86.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++ |+++++++|+|||+ ++..++.....|+..+.......+.|++|++||+|+..+.
T Consensus 71 i~Dt~G~~~~~-----~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (184)
T 3ihw_A 71 IRDEGGPPELQ-----FAAWVDAVVFVFSL----------EDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN 135 (184)
T ss_dssp EEECSSSCCHH-----HHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB
T ss_pred EEECCCChhhh-----eecCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 59999999988 88999999999999 8999999999999998776545678999999999985321
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+ ..+++..+... ...+.++++||+++.||+++|+++.
T Consensus 136 ~~----~v------------------------~~~~~~~~~~~------------~~~~~~~e~Sa~~~~gv~~lf~~l~ 175 (184)
T 3ihw_A 136 PR----VI------------------------DDSRARKLSTD------------LKRCTYYETCATYGLNVERVFQDVA 175 (184)
T ss_dssp CC----CS------------------------CHHHHHHHHHH------------TTTCEEEEEBTTTTBTHHHHHHHHH
T ss_pred cc----cc------------------------CHHHHHHHHHH------------cCCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 00 12233333221 1125678999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.++++.
T Consensus 176 ~~i~~~~ 182 (184)
T 3ihw_A 176 QKVVALR 182 (184)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988764
No 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.75 E-value=3.7e-18 Score=124.19 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=87.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~ 77 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ...+.|+++++||+|+.
T Consensus 60 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 60 IWDTAGQERFRSLRTPFYRGSDCCLLTFSV----------DDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEECCCCGGGHHHHGGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEeCCCchhhhhhHHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 699999999999999999999999999999 78888888888877765432 23578999999999986
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
.... ..+++.++... ...+.++++||+++.||+++|+
T Consensus 130 ~~~~-------------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~ 166 (177)
T 1wms_A 130 ERQV-------------------------------STEEAQAWCRD------------NGDYPYFETSAKDATNVAAAFE 166 (177)
T ss_dssp SCSS-------------------------------CHHHHHHHHHH------------TTCCCEEECCTTTCTTHHHHHH
T ss_pred cccc-------------------------------CHHHHHHHHHh------------cCCceEEEEeCCCCCCHHHHHH
Confidence 3211 12233333221 1235678999999999999999
Q ss_pred HHHHHHHHh
Q psy12099 158 DCRDIIQRM 166 (174)
Q Consensus 158 ~~~~~i~~~ 166 (174)
++.+.++++
T Consensus 167 ~l~~~~~~~ 175 (177)
T 1wms_A 167 EAVRRVLAT 175 (177)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999988753
No 62
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.3e-18 Score=128.90 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=89.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|++.++.+|..|+++++++|+|+|+ ++..+++....|+..+... ...+.|++||+||+|+..++
T Consensus 76 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 76 IWDTAGQERYRTITTAYYRGAMGFILMYDI----------TNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEER 144 (191)
T ss_dssp EECHHHHHHCHHHHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGC
T ss_pred EEeCCChHHHHHHHHHHHccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccc
Confidence 699999999999999999999999999999 7889998888888887553 34679999999999996543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 145 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 145 VV------------------------------PTEKGQLLAEQ-------------LGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence 21 11223333211 225688999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 182 ~~i~~~ 187 (191)
T 3dz8_A 182 DAICDK 187 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 63
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=127.71 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=83.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~Dl~~ 78 (174)
||||+|+++++.+ ..|+++++++|+|||+ ++..++.....|+..+.... ...+.|++|++||+|+..
T Consensus 73 i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 73 VMDTADLDTPRNC-ERYLNWAHAFLVVYSV----------DSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp EEECCC---CCCT-HHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred EEECCCCCcchhH-HHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 6999999999885 7899999999999999 78999999988988876542 125789999999999965
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccc-ccchhHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCA-VDTENIRRVFN 157 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA-~d~~~i~~~f~ 157 (174)
++.. ..+++.++... ..+.++++|| +++.||+++|+
T Consensus 142 ~~~v------------------------------~~~~~~~~~~~-------------~~~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 142 YRQV------------------------------TKAEGVALAGR-------------FGCLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp GCSS------------------------------CHHHHHHHHHH-------------HTCEEEECCSSSCSHHHHHHHH
T ss_pred cCcc------------------------------CHHHHHHHHHH-------------cCCcEEEEeecCccccHHHHHH
Confidence 3211 12334444321 1256789999 89999999999
Q ss_pred HHHHHHHH
Q psy12099 158 DCRDIIQR 165 (174)
Q Consensus 158 ~~~~~i~~ 165 (174)
.+.+.+.+
T Consensus 179 ~l~~~i~~ 186 (187)
T 3c5c_A 179 EAVREARR 186 (187)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988753
No 64
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.74 E-value=3.9e-18 Score=125.96 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=88.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus 75 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 75 IWDTAGQERYRTITTAYYRGAMGFLLMYDI----------ANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDER 143 (189)
T ss_dssp EEECCSCCSSCCSGGGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGC
T ss_pred EEeCCCcHHHhhhHHHhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 7888888888888887554 24578999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 144 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 144 VV------------------------------PAEDGRRLADD-------------LGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CC------------------------------CHHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence 11 01223333211 125688999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 181 ~~i~~~ 186 (189)
T 2gf9_A 181 DVICEK 186 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=126.18 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=87.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus 79 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 79 IWDTAGQERFNSITSAYYRSAKGIILVYDI----------TKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDR 147 (192)
T ss_dssp EEEECCSGGGHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGC
T ss_pred EEeCCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 7888888887777665433 34578999999999996542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+.. ....+.++++||+++.||+++|+++.
T Consensus 148 ~v------------------------------~~~~~~~~~~------------~~~~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 148 EI------------------------------TRQQGEKFAQ------------QITGMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp CS------------------------------CHHHHHHHHH------------TSTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH------------hcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 0122222211 01235678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++++
T Consensus 186 ~~i~~~ 191 (192)
T 2il1_A 186 DDILKK 191 (192)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988754
No 66
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.74 E-value=2.8e-18 Score=126.76 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=85.5
Q ss_pred CeeCCCCchhh-hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDER-RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r-~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++ .+|..|+++++++|+|+|+ ++..++.....|+..+.......+.|++|++||+|+..+
T Consensus 73 l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 73 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDM----------TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp EEECCCSHHHHTTTHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred EEECCCchhhhhhhhHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 69999999999 8999999999999999999 788999998899888876654567999999999999654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc---hhHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT---ENIRRVF 156 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~---~~i~~~f 156 (174)
+.. ..+.+..+.. ...+.++++||+++ .||+++|
T Consensus 143 ~~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~~~~i~~l~ 179 (189)
T 1z06_A 143 IQV------------------------------PTDLAQKFAD-------------THSMPLFETSAKNPNDNDHVEAIF 179 (189)
T ss_dssp CCS------------------------------CHHHHHHHHH-------------HTTCCEEECCSSSGGGGSCHHHHH
T ss_pred cee------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCcCCcccCHHHHH
Confidence 211 0122333321 12256789999999 9999999
Q ss_pred HHHHHHHH
Q psy12099 157 NDCRDIIQ 164 (174)
Q Consensus 157 ~~~~~~i~ 164 (174)
.++.+.+.
T Consensus 180 ~~l~~~i~ 187 (189)
T 1z06_A 180 MTLAHKLK 187 (189)
T ss_dssp HHHC----
T ss_pred HHHHHHHh
Confidence 99988764
No 67
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.74 E-value=4.7e-18 Score=127.12 Aligned_cols=112 Identities=22% Similarity=0.168 Sum_probs=89.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDV----------TDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp EECCTTTTTTTCCCGGGGTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTC
T ss_pred EEeCCChHHHHHHHHHhccCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence 699999999999999999999999999999 78889999888888875543 3578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. ...+.++++||+++.||+++|.++.
T Consensus 130 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 130 VV------------------------------EYDVAKEFAD-------------ANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 1222333321 1225678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.+.
T Consensus 167 ~~i~~~ 172 (206)
T 2bcg_Y 167 RQIKES 172 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 68
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.9e-18 Score=127.47 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=90.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++. +.+|..|+++++++|+|+|+ ++.+++.....|+..+.......+.|++||+||+|+..++
T Consensus 80 l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 148 (196)
T 2atv_A 80 ILDTAGQED-TIQREGHMRWGEGFVLVYDI----------TDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 148 (196)
T ss_dssp EEECCCCCC-CHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC
T ss_pred EEECCCCCc-ccchhhhhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccc
Confidence 699999999 88999999999999999999 7888999988888887765445688999999999997642
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch-hHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE-NIRRVFNDC 159 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~-~i~~~f~~~ 159 (174)
.. ..+++..+... ..+.++++||+++. ||+++|+++
T Consensus 149 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 149 QV------------------------------STEEGEKLATE-------------LACAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTSEEEECCTTTCTTCHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------hCCeEEEECCCcCCcCHHHHHHHH
Confidence 11 12233333221 12578899999999 999999999
Q ss_pred HHHHHHhh
Q psy12099 160 RDIIQRMH 167 (174)
Q Consensus 160 ~~~i~~~~ 167 (174)
.+.++++.
T Consensus 186 ~~~i~~~~ 193 (196)
T 2atv_A 186 CREVRRRR 193 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99998654
No 69
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.74 E-value=5e-19 Score=133.52 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=73.4
Q ss_pred eCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHH---HHHHcCCC-CCCCcEEEEEeCC-chh
Q psy12099 3 DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLF---KSIWNNRW-LRTISVILFLNKQ-DLL 77 (174)
Q Consensus 3 D~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~---~~i~~~~~-~~~~~iilv~NK~-Dl~ 77 (174)
|.|||++.|.+|.+||++++++|||+|. ++..+++ +.+.+ ..++++.. +.++|++|++||+ |++
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDS----------sD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANA----------EAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEEC----------BTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEecc----------ccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 5789999999999999999999999999 4555543 54544 44555543 5789999999995 775
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
... . ...+.+. ..++. . ++.++++.|||++|+++.+.++
T Consensus 177 ~Am-s--~~EI~e~----------------------------------L~L~~---l-~R~W~Iq~csA~TGeGL~EGLd 215 (227)
T 3l82_B 177 KRM-P--CFYLAHE----------------------------------LHLNL---L-NHPWLVQDTEAETLTGFLNGIE 215 (227)
T ss_dssp CBC-C--HHHHHHH----------------------------------TTGGG---G-CSCEEEEEEETTTCTTHHHHHH
T ss_pred CCC-C--HHHHHHH----------------------------------cCCcC---C-CCCEEEEEeECCCCcCHHHHHH
Confidence 432 1 1111111 12222 1 3689999999999999999999
Q ss_pred HHHHHHHHh
Q psy12099 158 DCRDIIQRM 166 (174)
Q Consensus 158 ~~~~~i~~~ 166 (174)
|+.+.+.++
T Consensus 216 WL~~~l~~k 224 (227)
T 3l82_B 216 WILEEVESK 224 (227)
T ss_dssp HHTTTTTTC
T ss_pred HHHHHHHhh
Confidence 998877544
No 70
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=3.3e-18 Score=124.85 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=88.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus 65 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDV----------TNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp EEECCCSGGGGGGTHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTC
T ss_pred EEeCCCChhhhhhhHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccc
Confidence 699999999999999999999999999999 78889999989988876643 3578999999999996432
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 134 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 134 KV------------------------------TAEDAQTYAQE-------------NGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEECCSSSCTTHHHHHHHHH
T ss_pred cC------------------------------CHHHHHHHHHH-------------cCCEEEEEECCCCCCHHHHHHHHH
Confidence 11 12233333221 235688999999999999999998
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+...
T Consensus 171 ~~~~~~ 176 (181)
T 2efe_B 171 RRLPRV 176 (181)
T ss_dssp HTCC--
T ss_pred HHHHhc
Confidence 876543
No 71
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.74 E-value=4.3e-18 Score=126.97 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=88.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 61 IWDTAGLERYRTITTAYYRGAMGFILMYDI----------TNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp EEEECCSGGGHHHHHTTGGGCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSC
T ss_pred EEECCCchhhcchHHHhhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCccc
Confidence 699999999999999999999999999999 7888998888888887554 24578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+... ..+.++++||+++.||+++|+++.
T Consensus 130 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 130 VV------------------------------SSERGRQLADH-------------LGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSSHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------CCCeEEEEECCCCCCHHHHHHHHH
Confidence 11 11223333211 124678999999999999999999
Q ss_pred HHHHHhh
Q psy12099 161 DIIQRMH 167 (174)
Q Consensus 161 ~~i~~~~ 167 (174)
+.+.++.
T Consensus 167 ~~i~~~~ 173 (203)
T 1zbd_A 167 DVICEKM 173 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 72
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.1e-18 Score=131.04 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=85.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 66 i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~----------~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~ 134 (223)
T 3cpj_B 66 IWDTAGQERYRAITSAYYRGAVGALIVYDI----------SKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLR 134 (223)
T ss_dssp EECCTTTTTTTCCCGGGTTTCCEEEEEEC-----------CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGC
T ss_pred EEECCCccchhhhHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 78899999888888876542 3578999999999997532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 135 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 135 AV------------------------------PTEESKTFAQE-------------NQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEECCCC-CCCHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 11223333211 235778999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 172 ~~i~~~ 177 (223)
T 3cpj_B 172 NTIYQK 177 (223)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 988754
No 73
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.74 E-value=2.1e-18 Score=127.94 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=86.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.+. ..|...+... ..+.|++||+||+|+..+
T Consensus 75 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAV----------NNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCT
T ss_pred EEECCCcHHHHHHhHhhccCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccC
Confidence 699999999999999999999999999999 889999887 4555554432 357899999999999753
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCccee-eeecccccchhHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCY-PHFTCAVDTENIRRVFND 158 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~-~~~tsA~d~~~i~~~f~~ 158 (174)
... .. ..+++..+... ..+. ++++||+++.||+++|++
T Consensus 143 ~~~--~~--------------------------~~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 143 GSD--DV--------------------------TKQEGDDLCQK-------------LGCVAYIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp TTT--CC--------------------------CHHHHHHHHHH-------------HTCSCEEECBTTTTBSHHHHHHH
T ss_pred CCC--cc--------------------------cHHHHHHHHHh-------------cCCCEEEEeecCCCCCHHHHHHH
Confidence 211 00 12233333221 1133 789999999999999999
Q ss_pred HHHHHHHhh
Q psy12099 159 CRDIIQRMH 167 (174)
Q Consensus 159 ~~~~i~~~~ 167 (174)
+.+.++++.
T Consensus 182 l~~~i~~~~ 190 (194)
T 3reg_A 182 SVDCIFSNK 190 (194)
T ss_dssp HHHHHHCSC
T ss_pred HHHHHHhcC
Confidence 999987653
No 74
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.74 E-value=3.2e-18 Score=123.62 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=79.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ...+.|++|++||+|+..++
T Consensus 59 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~ 127 (170)
T 1z08_A 59 IWDTAGQERFHALGPIYYRDSNGAILVYDI----------TDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKER 127 (170)
T ss_dssp EEECCCC-------CCSSTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGC
T ss_pred EEECCCcHhhhhhHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccccccc
Confidence 699999999999999999999999999999 7888888888888776543 22468999999999997542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 128 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 128 HV------------------------------SIQEAESYAES-------------VGAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 12233333221 225678999999999999999999
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 165 ~~~~ 168 (170)
T 1z08_A 165 KRMI 168 (170)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 75
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.74 E-value=3e-18 Score=128.76 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=86.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.... .|+..+... ..+.|++||+||+|+..+
T Consensus 61 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 61 LWDTAGQEDYSRLRPLSYRGADIFVLAFSL----------ISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp EECCCCCCCCCC--CGGGTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTC
T ss_pred EEECCCcHHHHHHHHhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhC
Confidence 699999999999999999999999999999 8889998887 676666443 247899999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ... ... .-..+++..+... . ....++++||+++.||+++|+++
T Consensus 129 ~~~--~~~------~~~--------------~v~~~~~~~~~~~-----~-------~~~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 129 KGY--LAD------HTN--------------VITSTQGEELRKQ-----I-------GAAAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp HHH--HHT------CSS--------------CCCHHHHHHHHHH-----H-------TCSEEEECCTTTCTTHHHHHHHH
T ss_pred ccc--ccc------ccC--------------CCCHHHHHHHHHH-----c-------CCceEEEccCCCCCCHHHHHHHH
Confidence 321 000 000 0012334433221 0 11367899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.+++.
T Consensus 175 ~~~~~~~ 181 (212)
T 2j0v_A 175 IKVVLQP 181 (212)
T ss_dssp HHHHHCC
T ss_pred HHHHhhh
Confidence 9988754
No 76
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=6e-18 Score=125.31 Aligned_cols=122 Identities=13% Similarity=0.206 Sum_probs=88.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.... .|+..+... ..++|++||+||+|+..+
T Consensus 70 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 70 LYDTAGQEDYDRLRPLSYPMTDVFLICFSV----------VNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EECCCCSSSSTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTC
T ss_pred EEECCCCcchhHHHHHhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence 699999999999999999999999999999 8888998887 677766543 247899999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+ .+... ..-..+++..+.... ....++++||+++.||+++|+++
T Consensus 138 ~~~--~~~~----~~~~~------------~~v~~~~~~~~~~~~------------~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 138 PKT--LARL----NDMKE------------KPICVEQGQKLAKEI------------GACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp HHH--HHHH----TTTTC------------CCCCHHHHHHHHHHH------------TCSCEEECCTTTCTTHHHHHHHH
T ss_pred ccc--hhhc----ccccC------------cccCHHHHHHHHHHc------------CCcEEEEeeCCCCCCHHHHHHHH
Confidence 311 0111 11100 001234444443211 11267899999999999999999
Q ss_pred HHHHH
Q psy12099 160 RDIIQ 164 (174)
Q Consensus 160 ~~~i~ 164 (174)
.+.++
T Consensus 188 ~~~i~ 192 (194)
T 2atx_A 188 IIAIL 192 (194)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98876
No 77
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.73 E-value=5.6e-18 Score=124.72 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=87.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++... ..|+..+... ..+.|++|++||+|+..+
T Consensus 59 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 59 LWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGC
T ss_pred EEECCCChhhhhhHHhhcCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcc
Confidence 699999999999999999999999999999 788899888 4666665433 257899999999999753
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc-cchhHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV-DTENIRRVFND 158 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~-d~~~i~~~f~~ 158 (174)
... +.+.-.+... .-..+++..+.... ..+.+++|||+ ++.||+++|+.
T Consensus 127 ~~~-----~~~~~~~~~~-------------~v~~~~~~~~~~~~------------~~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 127 VST-----LVELSNHRQT-------------PVSYDQGANMAKQI------------GAATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp HHH-----HHHHHTTTCC-------------CCCHHHHHHHHHHH------------TCSEEEECBTTTBHHHHHHHHHH
T ss_pred hhh-----HhhhhhcccC-------------CCCHHHHHHHHHHc------------CCcEEEEeeecCCCcCHHHHHHH
Confidence 211 1111000000 01234444443210 12567899998 78999999999
Q ss_pred HHHHHHH
Q psy12099 159 CRDIIQR 165 (174)
Q Consensus 159 ~~~~i~~ 165 (174)
+.+.+++
T Consensus 177 i~~~~l~ 183 (184)
T 1m7b_A 177 ATLACVN 183 (184)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998874
No 78
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.73 E-value=3e-18 Score=123.60 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=87.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|+++++||+|+....
T Consensus 56 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~ 124 (170)
T 1g16_A 56 IWDTAGQERFRTITTAYYRGAMGIILVYDI----------TDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRV 124 (170)
T ss_dssp EECCTTGGGTSCCCHHHHTTEEEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCC
T ss_pred EEeCCCChhhhhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCc
Confidence 699999999999999999999999999999 78888888888888876542 3578999999999993221
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+.+..+... ..+.++++||+++.||+++|+++.
T Consensus 125 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 125 VT-------------------------------ADQGEALAKE-------------LGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp SC-------------------------------HHHHHHHHHH-------------HTCCEEECBTTTTBSHHHHHHHHH
T ss_pred cC-------------------------------HHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence 11 1223333211 125678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988754
No 79
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=3e-18 Score=123.40 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=86.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|+++++||+|+..+.
T Consensus 56 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 56 IWDTAGQERFASLAPXYYRNAQAALVVYDV----------TKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp EEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSS
T ss_pred EEECCCChhhhhhhhhhhccCcEEEEEEec----------CChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccc
Confidence 699999999999999999999999999999 78889999988888886653 3578999999999997532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+ ..+.+.++... ..+.++++||+++.||+++|+++.
T Consensus 125 ~~---~~v------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1ek0_A 125 GE---RKV------------------------AREEGEKLAEE-------------KGLLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp CC---CCS------------------------CHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cc---cCC------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 10 000 11223333211 235788999999999999999988
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 165 ~~i 167 (170)
T 1ek0_A 165 EKI 167 (170)
T ss_dssp TTS
T ss_pred HHH
Confidence 754
No 80
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=2.7e-18 Score=123.59 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=87.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.... .+.|+++++||+|+..++
T Consensus 58 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 58 LWDTAGQEEFDAITKAYYRGAQACVLVFST----------TDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDS 125 (168)
T ss_dssp EECCTTGGGTTCCCHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGC
T ss_pred EEcCCCcHhHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCccc
Confidence 699999999999999999999999999999 78888888888888876543 578999999999997532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++... ..+.++++||+++.||+++|+++.
T Consensus 126 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 126 CI------------------------------KNEEAEGLAKR-------------LKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp SS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSSHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCeEEEEecCCCCCHHHHHHHHH
Confidence 11 01223333211 125678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+++
T Consensus 163 ~~~~~ 167 (168)
T 1z2a_A 163 EKHLQ 167 (168)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88764
No 81
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=7e-18 Score=125.12 Aligned_cols=111 Identities=18% Similarity=0.122 Sum_probs=87.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus 76 i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDI----------TKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp EEEECCSGGGGGGTHHHHTTCSEEEEEEET----------TCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred EEcCCCchhhHhhhHHhhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence 699999999999999999999999999999 78889999888888875542 4578999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.++.. ...+.++++||+++.||+++|+++.
T Consensus 145 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 145 EV------------------------------PLKDAKEYAE-------------SIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp CS------------------------------CHHHHHHHHH-------------TTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 11 1223333321 1236788999999999999999998
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 182 ~~i~~ 186 (192)
T 2fg5_A 182 RQIPP 186 (192)
T ss_dssp HTCC-
T ss_pred HHHHh
Confidence 87654
No 82
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.73 E-value=4.8e-18 Score=128.36 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=74.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.... .|+..+... ..++|++||+||+|+..+
T Consensus 86 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDV----------TSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEEC---------------CEEEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSC
T ss_pred EEECCCchhhhHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhcc
Confidence 699999999999999999999999999999 7888998886 566666443 257899999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.. ... . .-..+++..+... .....++++||+++.||+++|+++
T Consensus 154 ~~~--~~~~~~----~~~--~----------~v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~el~~~l 203 (214)
T 2j1l_A 154 KSL--VNKLRR----NGL--E----------PVTYHRGQEMARS------------VGAVAYLECSARLHDNVHAVFQEA 203 (214)
T ss_dssp HHH--HHHHHH----TTC--C----------CCCHHHHHHHHHH------------TTCSEEEECBTTTTBSHHHHHHHH
T ss_pred chh--hhhhcc----ccc--C----------cccHHHHHHHHHh------------cCCCEEEEecCCCCCCHHHHHHHH
Confidence 321 011110 000 0 0123344444221 011367899999999999999999
Q ss_pred HHHHHHhhh
Q psy12099 160 RDIIQRMHL 168 (174)
Q Consensus 160 ~~~i~~~~~ 168 (174)
.+.+++...
T Consensus 204 ~~~~~~~~~ 212 (214)
T 2j1l_A 204 AEVALSSRG 212 (214)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhhc
Confidence 999986644
No 83
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=1.3e-17 Score=123.36 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=87.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|++.++.+|..|+++++++|+|+|+ ++..++.+...|+..+.... +.|+++|+||+|+ .+.
T Consensus 97 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~-~~~ 162 (208)
T 3clv_A 97 IWDTAGQERYASIVPLYYRGATCAIVVFDI----------SNSNTLDRAKTWVNQLKISS---NYIIILVANKIDK-NKF 162 (208)
T ss_dssp EEECTTGGGCTTTHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC-C-C
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc-ccc
Confidence 699999999999999999999999999999 78888988888888886543 3899999999993 211
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++.+++.. ..+.++++||+++.||.++|+++.
T Consensus 163 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 163 QV------------------------------DILEVQKYAQD-------------NNLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEEECTTTCTTHHHHHHHHH
T ss_pred cC------------------------------CHHHHHHHHHH-------------cCCcEEEEecCCCCCHHHHHHHHH
Confidence 00 12334444322 235788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.++
T Consensus 200 ~~~~~~ 205 (208)
T 3clv_A 200 EEIYKN 205 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 84
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.73 E-value=8.2e-18 Score=135.58 Aligned_cols=115 Identities=22% Similarity=0.386 Sum_probs=87.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||+.++.+|..|+++++++|+|+|+ ++..++.....++..++......++|++||+||+|+..+.
T Consensus 213 i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp EEECC-----CCSHHHHHTTEEEEEEEEET----------TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 699999999999999999999999999999 7899999999999999887767789999999999986532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
...+....++ .. ......+.++++||+++.||+++|++|.
T Consensus 283 ------~~~~i~~~~~-------------------------------~~---~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 283 ------NAAEITDKLG-------------------------------LH---SLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp ------CHHHHHHHHT-------------------------------CT---TCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ------CHHHHHHHhc-------------------------------hh---hhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 1111111111 00 0233557889999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 323 ~~l~~ 327 (329)
T 3o47_A 323 NQLRN 327 (329)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 88754
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.73 E-value=9.8e-18 Score=125.27 Aligned_cols=122 Identities=18% Similarity=0.152 Sum_probs=86.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.... .|...+... ..+.|++||+||+|+..+
T Consensus 77 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EECCCCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTC
T ss_pred EEECCCchhHHHHHHHhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcC
Confidence 699999999999999999999999999999 7888888884 555554332 247899999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.+..... -..+++..+... .....++++||+++.||+++|+++
T Consensus 145 ~~~--~~~~~~~~~~~----------------v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 145 EHT--RRELAKMKQEP----------------VRSEEGRDMANR------------ISAFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp HHH--HHHHHTTTCCC----------------CCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred ccc--hhhhcccccCc----------------CCHHHHHHHHHh------------CCCcEEEEeeCCCCCCHHHHHHHH
Confidence 322 11111111000 013334444221 011267899999999999999999
Q ss_pred HHHHH
Q psy12099 160 RDIIQ 164 (174)
Q Consensus 160 ~~~i~ 164 (174)
.+.++
T Consensus 195 ~~~~l 199 (201)
T 2gco_A 195 TRAGL 199 (201)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98876
No 86
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.73 E-value=8.1e-18 Score=122.87 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=85.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.... .|+..+... ..+.|++|++||+|+..+
T Consensus 60 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 60 LWDTAGQEDYNRLRPLSYRGADVFILAFSL----------ISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp EECCCC-CTTTTTGGGGGTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTC
T ss_pred EEECCCChhhhhhHHhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcC
Confidence 699999999999999999999999999999 7888998887 566665443 247899999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ... .+ .. ..-..+++..+... . ....++++||+++.||+++|+++
T Consensus 128 ~~~-----~~~-~~-~~-------------~~v~~~~~~~~~~~-----~-------~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 128 KQF-----FID-HP-GA-------------VPITTVQGEELKKL-----I-------GAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HHH-----HHH-C---C-------------CCCCHHHHHHHHHH-----H-------TCSEEEECCTTTCTTHHHHHHHH
T ss_pred ccc-----ccc-cc-cC-------------CCCCHHHHHHHHHH-----c-------CCCEEEEEECCCCCCHHHHHHHH
Confidence 321 000 00 00 00112334443221 0 11367899999999999999999
Q ss_pred HHHHH
Q psy12099 160 RDIIQ 164 (174)
Q Consensus 160 ~~~i~ 164 (174)
.+.++
T Consensus 176 ~~~i~ 180 (182)
T 3bwd_D 176 IRVVL 180 (182)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 88764
No 87
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-17 Score=126.03 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=87.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++... ..|+..+... ..+.|++||+||+|+..+
T Consensus 80 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 80 LWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGC
T ss_pred EEeCCCcHhhhHHHHhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccc
Confidence 699999999999999999999999999999 788899888 5666666443 257899999999999753
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc-cchhHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV-DTENIRRVFND 158 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~-d~~~i~~~f~~ 158 (174)
... +.++-.+... .-..+++..+.... ..+.+++|||+ ++.||+++|+.
T Consensus 148 ~~~-----~~~~~~~~~~-------------~v~~~~~~~~~~~~------------~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 148 VST-----LVELSNHRQT-------------PVSYDQGANMAKQI------------GAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp HHH-----HHHHHTTTCC-------------CCCHHHHHHHHHHH------------TCSEEEECCTTTCHHHHHHHHHH
T ss_pred hhh-----hhhhcccccC-------------CCCHHHHHHHHHHc------------CCCEEEEeeeccCCcCHHHHHHH
Confidence 211 1111000000 00233444443210 12467899998 68999999999
Q ss_pred HHHHHHH
Q psy12099 159 CRDIIQR 165 (174)
Q Consensus 159 ~~~~i~~ 165 (174)
+.+.+++
T Consensus 198 l~~~~l~ 204 (205)
T 1gwn_A 198 ATLACVN 204 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998875
No 88
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.72 E-value=1.6e-17 Score=140.28 Aligned_cols=116 Identities=22% Similarity=0.418 Sum_probs=91.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||+.++.+|..||++++++|+|+|+ ++..++.+...|+..+++.....++|++||+||+|+..+.
T Consensus 370 l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 439 (497)
T 3lvq_E 370 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDC----------ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 439 (497)
T ss_dssp EEEECCCGGGSGGGGGGGTTCCEEEEEEET----------TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC
T ss_pred EEECCCcHHHHHHHHHHhccCCEEEEEEEC----------cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC
Confidence 699999999999999999999999999999 7899999999999999887777789999999999986431
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+. .+ .. ....+.+.++++||++|.||+++|++|.
T Consensus 440 ~~---~~~~~~---~~-------------------------------~~---~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 440 KP---HEIQEK---LG-------------------------------LT---RIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp CH---HHHHHH---TT-------------------------------CT---TCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CH---HHHHHH---hc-------------------------------hh---hhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 00 111111 10 00 0233557789999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.+.
T Consensus 480 ~~~~~~ 485 (497)
T 3lvq_E 480 SNYKSK 485 (497)
T ss_dssp HHCC--
T ss_pred HHHHhc
Confidence 877544
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.72 E-value=7e-18 Score=120.73 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=87.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.......+.|+++++||+|+....
T Consensus 55 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~ 124 (166)
T 2ce2_X 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART 124 (166)
T ss_dssp EEECCCCSSCCHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC
T ss_pred EEECCCchhhhHHHHHhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc
Confidence 599999999999999999999999999999 7888998888888887665444578999999999986521
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+.+.++... ..+.++++||+++.|++++|+++.
T Consensus 125 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 125 VE-------------------------------SRQAQDLARS-------------YGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp SC-------------------------------HHHHHHHHHH-------------HTCCEEEECTTTCTTHHHHHHHHH
T ss_pred cC-------------------------------HHHHHHHHHH-------------cCCeEEEecCCCCCCHHHHHHHHH
Confidence 11 1222333211 125678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88753
No 90
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.72 E-value=9.1e-18 Score=125.27 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=88.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~ 77 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ...+.|++||+||+|+.
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDV----------TAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEECSSGGGSCSCCGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEeCCCcHHHHHhHHHHHhCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 699999999999999999999999999999 78888888888877775432 12478999999999986
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
..... .+.+..+... ...+.++++||+++.||+++|+
T Consensus 131 ~~~~~-------------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 131 NRQVA-------------------------------TKRAQAWCYS------------KNNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp CCCSC-------------------------------HHHHHHHHHH------------TTSCCEEECBTTTTBSHHHHHH
T ss_pred ccccC-------------------------------HHHHHHHHHh------------cCCceEEEEeCCCCCCHHHHHH
Confidence 32111 1223333211 1235678999999999999999
Q ss_pred HHHHHHHHhh
Q psy12099 158 DCRDIIQRMH 167 (174)
Q Consensus 158 ~~~~~i~~~~ 167 (174)
++.+.+.++.
T Consensus 168 ~l~~~~~~~~ 177 (207)
T 1vg8_A 168 TIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 91
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.72 E-value=1.6e-17 Score=123.71 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=83.8
Q ss_pred CeeCCCCch-hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRD-ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~-~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++. ++.++..|+++++++|+|||+ ++..++.....|+..+.......++|++|++||+|+...
T Consensus 60 ~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv----------~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 60 LLDMWENKGENEWLHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX 129 (192)
T ss_dssp EECCCCC----CTTGGGHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG
T ss_pred EEEeccCcchhhhHHHhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc
Confidence 599999987 678899999999999999999 899999999888887765433357899999999998653
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. . .+++..+.. ...+.+++|||+++.||+++|+++
T Consensus 130 r~v----~--------------------------~~~~~~~a~-------------~~~~~~~e~SA~~g~~v~~lf~~l 166 (192)
T 2cjw_A 130 REV----S--------------------------VSEGRAXAV-------------VFDXKFIETSAAVQHNVKELFEGI 166 (192)
T ss_dssp CCS----C--------------------------HHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHH
T ss_pred ccc----c--------------------------HHHHHHHHH-------------HhCCceEEeccccCCCHHHHHHHH
Confidence 211 1 112222211 112467899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.+...
T Consensus 167 ~~~~~~~ 173 (192)
T 2cjw_A 167 VRQVRLR 173 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988644
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.72 E-value=6.9e-17 Score=120.19 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=80.8
Q ss_pred CeeCCCCchhhhh-H--hhhhcCCCEEEEEEeCCCccccccCCCCc--chHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRK-W--IQCFNDVTAIIFVTACSSYNMVLREDPTQ--NRLRESLDLFKSIWNNRWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~-w--~~y~~~~~~ii~v~d~s~~~~~~~e~~~~--~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D 75 (174)
||||+||++|+.. | ..||++++++|+|+|+ ++. +++.....|+..+... ..++|++||+||+|
T Consensus 73 i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 140 (196)
T 3llu_A 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA----------QDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVD 140 (196)
T ss_dssp EEECCSSCCTTCTTCCHHHHHHTCSEEEEEEET----------TSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGG
T ss_pred EEECCCCHHHHhhhhhcccccccCCEEEEEEEC----------CCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccc
Confidence 6999999998766 4 8999999999999999 555 5666666777766432 35899999999999
Q ss_pred hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099 76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV 155 (174)
Q Consensus 76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~ 155 (174)
+..+... ....+.. ..+.+..+ .... .....+.+++|||++ .||+++
T Consensus 141 l~~~~~~--~~~~~~v---------------------~~~~~~~~-----~~~~----~~~~~~~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 141 GLSDDHK--IETQRDI---------------------HQRANDDL-----ADAG----LEKLHLSFYLTSIYD-HSIFEA 187 (196)
T ss_dssp GSCHHHH--HHHHHHH---------------------HHHHHHHH-----HHTT----CTTSCEEEEEECTTS-THHHHH
T ss_pred cCchhhh--hHHHhHH---------------------HHHHHHHH-----HHhh----hhcCCcceEEEEech-hhHHHH
Confidence 8654211 0000000 01111111 1110 123457889999999 999999
Q ss_pred HHHHHHHH
Q psy12099 156 FNDCRDII 163 (174)
Q Consensus 156 f~~~~~~i 163 (174)
|..+.+.|
T Consensus 188 f~~l~~~l 195 (196)
T 3llu_A 188 FSKVVQKL 195 (196)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
No 93
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.71 E-value=2.1e-17 Score=119.10 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=85.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ..++.|++|++||+|+..++
T Consensus 59 ~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDI----------TKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEECCSGGGGGGTHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGC
T ss_pred EEcCCCchhhhcccHhhCcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCcccccc
Confidence 699999999999999999999999999999 7888888888888877653 34678999999999997532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.+..+.. ...+.++++||+++.||+++|+++.
T Consensus 128 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 128 EV------------------------------MERDAKDYAD-------------SIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp CS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 11 0122333321 1225688999999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 165 ~~i 167 (170)
T 1z0j_A 165 RRI 167 (170)
T ss_dssp HHC
T ss_pred HHH
Confidence 765
No 94
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.1e-17 Score=124.05 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=88.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++... ..|+..+... ..+.|++||+||+|+..+
T Consensus 77 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSV----------DSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEECTTCTTCTTTGGGGCTTCCEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGC
T ss_pred EEECCCcHHHHHHHHhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhcc
Confidence 699999999999999999999999999999 788888888 4565555432 257899999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.+..... -..+++..+... .....++++||+++.||+++|+++
T Consensus 145 ~~~--~~~~~~~~~~~----------------v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 145 EHV--RTELARMKQEP----------------VRTDDGRAMAVR------------IQAYDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp HHH--HHHHHHTTCCC----------------CCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred ccc--hhhhhhcccCC----------------CCHHHHHHHHHh------------cCCCEEEEeeCCCCCCHHHHHHHH
Confidence 322 11222111000 012334443211 011267899999999999999999
Q ss_pred HHHHHHhh
Q psy12099 160 RDIIQRMH 167 (174)
Q Consensus 160 ~~~i~~~~ 167 (174)
.+.+++..
T Consensus 195 ~~~i~~~~ 202 (207)
T 2fv8_A 195 TRAALQKR 202 (207)
T ss_dssp HHHHHSCC
T ss_pred HHHHHHHh
Confidence 99887553
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=2.3e-17 Score=120.74 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=87.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.... .|+..+... ..+.|++|++||+|+..+
T Consensus 57 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 57 LWDTAGQEDYDRLRPLSYPQTDVSLICFSL----------VSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EECCCCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTC
T ss_pred EEECCCCHhHHHHHHHhccCCcEEEEEEEC----------CChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEccccccc
Confidence 699999999999999999999999999999 7888898887 566666543 237899999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.+ ... ..-..+++..+... .....++++||+++.||+++|+++
T Consensus 125 ~~~--~~~~~~----~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 125 KDT--IEKLKE----KKL------------TPITYPQGLAMAKE------------IGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp HHH--HHHHHH----TTC------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred chh--hhhhcc----ccc------------ccCCHHHHHHHHHh------------cCCcEEEEecCCCccCHHHHHHHH
Confidence 311 111111 000 00013334443221 011367899999999999999999
Q ss_pred HHHHHH
Q psy12099 160 RDIIQR 165 (174)
Q Consensus 160 ~~~i~~ 165 (174)
.+.++.
T Consensus 175 ~~~~~~ 180 (186)
T 1mh1_A 175 IRAVLC 180 (186)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 988764
No 96
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=124.19 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=86.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+... ...+.|++||+||+|+....
T Consensus 81 i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~ 149 (199)
T 2p5s_A 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDV----------TCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTA 149 (199)
T ss_dssp EEECTTCTTCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHH
T ss_pred EEECCCCcchhhhHHHHHhhCCEEEEEEEC----------CChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccccccc
Confidence 699999999999999999999999999999 7888888888888776443 23578999999999997543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.......+ ..+.+..+... ..+.++++||+++.||.++|.++.
T Consensus 150 ~~~~~~~v------------------------~~~~~~~~~~~-------------~~~~~~~~SA~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 150 ATEGQKCV------------------------PGHFGEKLAMT-------------YGALFCETSAKDGSNIVEAVLHLA 192 (199)
T ss_dssp HHTTCCCC------------------------CHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cccccccc------------------------CHHHHHHHHHH-------------cCCeEEEeeCCCCCCHHHHHHHHH
Confidence 21000000 12233333221 225678999999999999999999
Q ss_pred HHHHH
Q psy12099 161 DIIQR 165 (174)
Q Consensus 161 ~~i~~ 165 (174)
+.+.+
T Consensus 193 ~~i~~ 197 (199)
T 2p5s_A 193 REVKK 197 (199)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 88753
No 97
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.71 E-value=6.9e-18 Score=122.64 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=86.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++..|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|+++|+||+|+..++
T Consensus 67 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 67 LWDTAGQERFRSLIPSYIRDSTVAVVVYDI----------TNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEEECCSGGGGGGSHHHHHTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGC
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccC
Confidence 699999999999999999999999999999 78888888888888876542 3578999999999997542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+++..+... ..+.++++||+++.||+++|+++.
T Consensus 136 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 136 QV------------------------------STEEGERKAKE-------------LNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------HTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred cC------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 11223333221 125678999999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 173 ~~~~ 176 (179)
T 2y8e_A 173 AALP 176 (179)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 7654
No 98
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=1.1e-17 Score=125.50 Aligned_cols=121 Identities=12% Similarity=0.151 Sum_probs=86.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.+.. .|+..+.... .+.|++||+||+|+..+
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 82 LWDTAGLEDYDRLRPLSYPQTDVFLICFSL----------VSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTC
T ss_pred EEECCCchhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccc
Confidence 699999999999999999999999999999 8899999887 5666654432 57899999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+.+ ... ..-..+++..+... .....++++||+++.||+++|+++
T Consensus 150 ~~~--~~~~~~----~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 150 KDT--IEKLKE----KKL------------TPITYPQGLAMAKE------------IGAVKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp HHH--HHHHHH----TTC------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred hhh--hhhhhc----ccc------------ccccHHHHHHHHHh------------cCCcEEEEeeCCCCCCHHHHHHHH
Confidence 322 111111 000 00123344444221 112347899999999999999999
Q ss_pred HHHH
Q psy12099 160 RDII 163 (174)
Q Consensus 160 ~~~i 163 (174)
.+.+
T Consensus 200 ~~~~ 203 (204)
T 4gzl_A 200 IRAV 203 (204)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8754
No 99
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.71 E-value=3.2e-17 Score=119.56 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=82.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHc--CCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWN--NRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~--~~~~~~~~iilv~NK~Dl~~ 78 (174)
+|||+||++ ..|+++++++|+|+|+ ++..++.....|+..+.. .....++|++|++||+|+..
T Consensus 58 i~Dt~G~~~-----~~~~~~~d~~ilv~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 58 IREEAGAPD-----AKFSGWADAVIFVFSL----------EDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp EEECSSSCC-----HHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred EEECCCCch-----hHHHHhCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 699999987 5689999999999999 889999888886544422 22235789999999999853
Q ss_pred HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099 79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~ 158 (174)
.... .. ..+++.++... ...+.+++|||+++.||+++|++
T Consensus 123 ~~~~--~v--------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 123 SSPR--VV--------------------------GDARARALXAD------------MKRCSYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp TBCC--CS--------------------------CHHHHHHHHHH------------HSSEEEEEEBTTTTBTHHHHHHH
T ss_pred cccC--cC--------------------------CHHHHHHHHHh------------hcCCeEEEEeccccCCHHHHHHH
Confidence 2100 00 12333333221 02367889999999999999999
Q ss_pred HHHHHHHhhhh
Q psy12099 159 CRDIIQRMHLR 169 (174)
Q Consensus 159 ~~~~i~~~~~~ 169 (174)
+.+.+++...+
T Consensus 163 l~~~~~~~~~~ 173 (178)
T 2iwr_A 163 VAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999876443
No 100
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=1.2e-17 Score=126.43 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=85.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ..+.|++||+||+|+..+.
T Consensus 68 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDV----------TSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp EEEECSGGGTSCCCHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCS
T ss_pred EEeCCChHHHhHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCcccccc
Confidence 699999999999999999999999999999 7889999988888888765 2478999999999996543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..... +.. ...+.++++||+++.||+++|.++.
T Consensus 136 ~~---~~~~~-----------------------------~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 136 VK---AKSIV-----------------------------FHR-------------KKNLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp SC---GGGCC-----------------------------HHH-------------HHTCEEEECBGGGTBTTTHHHHHHH
T ss_pred cc---HHHHH-----------------------------HHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 22 11111 110 1225677889999999999999888
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.++..
T Consensus 171 ~~l~~~ 176 (221)
T 3gj0_A 171 RKLIGD 176 (221)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 887654
No 101
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=2.1e-17 Score=123.84 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=86.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+....
T Consensus 73 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~ 141 (213)
T 3cph_A 73 LWDTAGQERFRTITTAYYRGAMGIILVYDV----------TDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRV 141 (213)
T ss_dssp EECCTTGGGGTCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCC
T ss_pred EEeCCCcHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence 699999999999999999999999999999 78888888888888876542 3478999999999983221
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+.+..+... ..+.++++||+++.||+++|+++.
T Consensus 142 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 142 VT-------------------------------ADQGEALAKE-------------LGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp SC-------------------------------HHHHHHHHHH-------------HTCCEEECBTTTTBSSHHHHHHHH
T ss_pred cC-------------------------------HHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 1222222211 124678999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+..+
T Consensus 178 ~~~~~~ 183 (213)
T 3cph_A 178 KLIQEK 183 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=4.9e-17 Score=122.59 Aligned_cols=112 Identities=11% Similarity=-0.007 Sum_probs=86.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ..+.|++||+||+|+..+.
T Consensus 65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~ 133 (218)
T 4djt_A 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDV----------TSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQ 133 (218)
T ss_dssp EEEECSGGGTSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC---
T ss_pred EEecCCchhhchHHHHHhhcCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence 699999999999999999999999999999 78888888888887775442 3458999999999997542
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . .+.+..+ +....+.++++||+++.||+++|+++.
T Consensus 134 ~~----~--------------------------~~~~~~~-------------~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 170 (218)
T 4djt_A 134 KI----S--------------------------KKLVMEV-------------LKGKNYEYFEISAKTAHNFGLPFLHLA 170 (218)
T ss_dssp -C----C--------------------------HHHHHHH-------------TTTCCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred cc----C--------------------------HHHHHHH-------------HHHcCCcEEEEecCCCCCHHHHHHHHH
Confidence 11 0 1112222 223446788999999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+...
T Consensus 171 ~~~~~~ 176 (218)
T 4djt_A 171 RIFTGR 176 (218)
T ss_dssp HHHHCC
T ss_pred HHHhcc
Confidence 988754
No 103
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.69 E-value=8.7e-18 Score=125.27 Aligned_cols=110 Identities=19% Similarity=0.177 Sum_probs=77.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus 86 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 86 IWDTAGQERFRTITSSYYRGAHGIIVVYDV----------TDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp EECCTTCTTCCCCSCC--CCCSEEEECC-C----------CCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--C
T ss_pred EEECCCcHhHHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccc
Confidence 699999999999999999999999999999 7899999998888887544 34578999999999997543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
... ......+.. ...+.++++||+++.||+++|+++.
T Consensus 155 ~v~-~~~~~~~~~------------------------------------------~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 155 VVD-YTTAKEFAD------------------------------------------SLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp CCC-SCC-CHHHH------------------------------------------TTTCCBCCCCC---HHHHHHHHHHT
T ss_pred cCC-HHHHHHHHH------------------------------------------HcCCeEEEEECCCCCCHHHHHHHHH
Confidence 210 011111111 1225577899999999999999998
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+.
T Consensus 192 ~~l~ 195 (199)
T 3l0i_B 192 AEIK 195 (199)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 7664
No 104
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.1e-17 Score=120.63 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=83.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR-WLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~-~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ...+.|+++++||+|+..+
T Consensus 55 ~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 55 ITDTTGSHQFPAMQRLSISKGHAFILVYSI----------TSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp EEECCSCSSCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred EEECCCchhhHHHHHHhcccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 699999999999999999999999999999 78888888888877765431 2357899999999998654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
+.. . .+.+..+.. ...+.++++||+++.||+++|+++
T Consensus 125 ~~v----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 125 REV----Q--------------------------SSEAEALAR-------------TWKCAFMETSAKLNHNVKELFQEL 161 (172)
T ss_dssp CCS----C--------------------------HHHHHHHHH-------------HHTCEEEECBTTTTBSHHHHHHHH
T ss_pred ccc----C--------------------------HHHHHHHHH-------------HhCCeEEEecCCCCcCHHHHHHHH
Confidence 211 0 111222211 112567899999999999999999
Q ss_pred HHHHH
Q psy12099 160 RDIIQ 164 (174)
Q Consensus 160 ~~~i~ 164 (174)
.+.+.
T Consensus 162 ~~~~~ 166 (172)
T 2erx_A 162 LNLEK 166 (172)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 87654
No 105
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.68 E-value=7.6e-18 Score=132.62 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=78.0
Q ss_pred eCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHH---HHHcCCC-CCCCcEEEEEeC-Cchh
Q psy12099 3 DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFK---SIWNNRW-LRTISVILFLNK-QDLL 77 (174)
Q Consensus 3 D~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~---~i~~~~~-~~~~~iilv~NK-~Dl~ 77 (174)
|+|||++.|.+|.+||++++++|||+|. ++.+|++ +.+.+. .++++.. ..++|++|++|| +|+.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDS----------sDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANA----------EAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBC----------BTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecC----------CcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 5799999999999999999999999999 5666654 444333 4555443 578999999996 6886
Q ss_pred hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099 78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN 157 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~ 157 (174)
...-. ..+.+. ..++. . ++.++++.|||++|+++.+.++
T Consensus 262 ~Ams~---~EI~e~----------------------------------L~L~~---l-~r~W~Iq~csA~tGeGL~EGld 300 (312)
T 3l2o_B 262 KRMPC---FYLAHE----------------------------------LHLNL---L-NHPWLVQDTEAETLTGFLNGIE 300 (312)
T ss_dssp CBCCH---HHHHHH----------------------------------TTGGG---G-CSCEEEEEEETTTCTTHHHHHH
T ss_pred CCCCH---HHHHHH----------------------------------cCCcc---C-CCcEEEEecccCCCcCHHHHHH
Confidence 53211 111111 11222 1 3689999999999999999999
Q ss_pred HHHHHHHHh
Q psy12099 158 DCRDIIQRM 166 (174)
Q Consensus 158 ~~~~~i~~~ 166 (174)
|+.+.+.++
T Consensus 301 WL~~~l~~k 309 (312)
T 3l2o_B 301 WILEEVESK 309 (312)
T ss_dssp HHHHHSCC-
T ss_pred HHHHHHHhh
Confidence 999887544
No 106
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.1e-17 Score=124.02 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=84.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR-WLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~-~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.....|+..+.... ...+.|++||+||+|+..+
T Consensus 60 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 60 ITDTTGSHQFPAMQRLSISKGHAFILVFSV----------TSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp EEECCGGGSCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred EEeCCChHHhHHHHHHhhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 699999999999999999999999999999 78888888777776654422 1347899999999998642
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
.+. .+.+..+... ..+.++++||+++.||+++|+++
T Consensus 130 ~~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l 165 (199)
T 2gf0_A 130 EVD-------------------------------TREAQAVAQE-------------WKCAFMETSAKMNYNVKELFQEL 165 (199)
T ss_dssp SSC-------------------------------HHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHH
T ss_pred ccC-------------------------------HHHHHHHHHH-------------hCCeEEEEecCCCCCHHHHHHHH
Confidence 111 1222222211 12567899999999999999999
Q ss_pred HHHHHHh
Q psy12099 160 RDIIQRM 166 (174)
Q Consensus 160 ~~~i~~~ 166 (174)
.+.+..+
T Consensus 166 ~~~~~~~ 172 (199)
T 2gf0_A 166 LTLETRR 172 (199)
T ss_dssp HHHCSSS
T ss_pred HHHHhhh
Confidence 9877543
No 107
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.66 E-value=5.9e-17 Score=119.43 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=83.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+||++++.+|..|+++++++++|+|+ ++. .++.....|+..+.... .++|++||+||+|+..+
T Consensus 60 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 60 VWDFAGREEFYSTHPHFMTQRALYLAVYDL----------SKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDE 127 (184)
T ss_dssp EEEECSHHHHHTTSHHHHHHSEEEEEEEEG----------GGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCH
T ss_pred EEecCCCHHHHHhhHHHccCCcEEEEEEeC----------CcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccc
Confidence 699999999999999999999999999999 565 46777888888875532 47899999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce----eeeecccccch-hHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC----YPHFTCAVDTE-NIRR 154 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~----~~~~tsA~d~~-~i~~ 154 (174)
+.. ..... +.+..+ +....+ .++++||+++. ++.+
T Consensus 128 ~~~--~~~~~-------------------------~~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~~~~~~ 167 (184)
T 2zej_A 128 KQR--KACMS-------------------------KITKEL-------------LNKRGFPAIRDYHFVNATEESDALAK 167 (184)
T ss_dssp HHH--HHHHH-------------------------HHHHHT-------------TTCTTSCEEEEEEECCTTSCCHHHHH
T ss_pred hhh--HHHHH-------------------------HHHHHH-------------HHhcCCcchhheEEEecccCchhHHH
Confidence 322 00000 001111 111122 37899999995 9999
Q ss_pred HHHHHHHHHHHh
Q psy12099 155 VFNDCRDIIQRM 166 (174)
Q Consensus 155 ~f~~~~~~i~~~ 166 (174)
+++.+.+.+.+.
T Consensus 168 l~~~i~~~~~~~ 179 (184)
T 2zej_A 168 LRKTIINESLNF 179 (184)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcc
Confidence 999998877654
No 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.65 E-value=3.4e-16 Score=117.58 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=55.9
Q ss_pred CeeCCCCchhhh-hHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERR-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNR--WLRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~Dl 76 (174)
||||+||++++. +|..|+++++++|+|+|+ ++. .++.....++..++... ...+.|++||+||+|+
T Consensus 58 i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (214)
T 2fh5_B 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDS----------AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127 (214)
T ss_dssp EEECCCCHHHHHHHHHHHGGGEEEEEEEEET----------TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred EEECCCChhHHHHHHHHHHhhCCEEEEEEEC----------CCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence 699999999998 899999999999999999 553 34667777777665442 2346899999999999
Q ss_pred hhH
Q psy12099 77 LAE 79 (174)
Q Consensus 77 ~~~ 79 (174)
..+
T Consensus 128 ~~~ 130 (214)
T 2fh5_B 128 AMA 130 (214)
T ss_dssp TTC
T ss_pred CCc
Confidence 753
No 109
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=1.4e-17 Score=124.56 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=83.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.+.. .|+..+... ..+.|++||+||+|+..+
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 82 LWDTAGQEDYDRLRPLSYPQTDVFLICFSL----------VSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 149 (204)
Confidence 699999999999999999999999999999 7888888876 555555432 237899999999999764
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFND 158 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~ 158 (174)
... ...+... ... ....+++..+. ..... .++++||+++.||+++|++
T Consensus 150 ~~~--~~~~~~~---~~~-------------~v~~~~~~~~~-------------~~~~~~~~~~vSA~~g~gi~~l~~~ 198 (204)
T 3th5_A 150 KDT--IEKLKEK---KLT-------------PITYPQGLAMA-------------KEIGAVKYLECSALTQRGLKTVFDE 198 (204)
Confidence 321 1111100 000 00111222221 11223 5678999999999999999
Q ss_pred HHHHHH
Q psy12099 159 CRDIIQ 164 (174)
Q Consensus 159 ~~~~i~ 164 (174)
+.+.++
T Consensus 199 l~~~il 204 (204)
T 3th5_A 199 AIRAVL 204 (204)
Confidence 987653
No 110
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.64 E-value=4.5e-16 Score=123.99 Aligned_cols=123 Identities=12% Similarity=0.140 Sum_probs=87.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|+++++.+|..|+++++++|+|+|+ ++..++.... .|+..+.... .++|++||+||+|+...
T Consensus 207 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSL----------VSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEECCCGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTC
T ss_pred EEeCCCchhhhHHHHHhccCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccc
Confidence 699999999999999999999999999999 7888988886 5666654432 37899999999999754
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... ...+. +... ..-..+++.++... .....++++||+++.||+++|+.+
T Consensus 275 ~~~--~~~~~----~~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 275 KDT--IEKLK----EKKL------------TPITYPQGLAMAKE------------IGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HHH--HHHHH----HTTC------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred cch--hhhcc----cccc------------ccccHHHHHHHHHH------------cCCcEEEEecCCCCcCHHHHHHHH
Confidence 211 01111 1000 00123444444321 011367899999999999999999
Q ss_pred HHHHHH
Q psy12099 160 RDIIQR 165 (174)
Q Consensus 160 ~~~i~~ 165 (174)
.+.+++
T Consensus 325 ~~~~~~ 330 (332)
T 2wkq_A 325 IRAVLC 330 (332)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988764
No 111
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=122.74 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=81.1
Q ss_pred CCCCchhhhhHhhhhc---------------------CCCEEEEEEeCCCccccccCCCCc--chHHHHHHHHHHHHcCC
Q psy12099 4 VGGQRDERRKWIQCFN---------------------DVTAIIFVTACSSYNMVLREDPTQ--NRLRESLDLFKSIWNNR 60 (174)
Q Consensus 4 ~~Gq~~~r~~w~~y~~---------------------~~~~ii~v~d~s~~~~~~~e~~~~--~~~~~~~~~~~~i~~~~ 60 (174)
++||++|+.+|..||+ +++++|+|+|+ ++. .+++....|+..+....
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~----------t~~~~~s~~~~~~~l~~i~~~~ 194 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV----------SRGMNRNFDDQLKFVSNLYNQL 194 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC----------BC----CHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC----------CCCchhhHHHHHHHHHHHHHHh
Confidence 8999999999999998 89999999999 677 89999888888876542
Q ss_pred CCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCccee
Q psy12099 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCY 140 (174)
Q Consensus 61 ~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~ 140 (174)
...++|++||+||+|+..++.. +++..+.. ....+.
T Consensus 195 ~~~~~piilV~NK~Dl~~~~~v--------------------------------~~~~~~~~------------~~~~~~ 230 (255)
T 3c5h_A 195 AKTKKPIVVVLTKCDEGVERYI--------------------------------RDAHTFAL------------SKKNLQ 230 (255)
T ss_dssp HHTTCCEEEEEECGGGBCHHHH--------------------------------HHHHHHHH------------TSSSCC
T ss_pred ccCCCCEEEEEEcccccccHHH--------------------------------HHHHHHHH------------hcCCCe
Confidence 3357899999999998643211 11222211 012356
Q ss_pred eeecccccchhHHHHHHHHHHHHH
Q psy12099 141 PHFTCAVDTENIRRVFNDCRDIIQ 164 (174)
Q Consensus 141 ~~~tsA~d~~~i~~~f~~~~~~i~ 164 (174)
++++||+++.||+++|+++.+.+.
T Consensus 231 ~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 231 VVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988763
No 112
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.62 E-value=1.3e-15 Score=110.63 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=79.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|+++++.+|..++++++++|+|+|+ ++.. .....+.+..+. ..+.|++|++||+|+....
T Consensus 59 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~-~~~~~~~l~~~~----~~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 59 FLDTPGHEAFTTMRARGAQVTDIVILVVAA----------DDGV-MPQTVEAINHAK----AANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp ESCCCSSSSSSCSCCSSCCCCCEEEEEEET----------TCCC-CHHHHHHHHHHG----GGSCCEEEEEETTTSSCSC
T ss_pred EEECCCCHHHHHHHHHHHhhCCEEEEEEEC----------CCCC-cHHHHHHHHHHH----hCCCCEEEEEECccCCcCC
Confidence 699999999999999999999999999999 4422 233334444432 2368999999999996521
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
. ..+...+..... ... .....+.++++||+++.||+++|+++.
T Consensus 124 ~----~~~~~~~~~~~~------------------------------~~~---~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 124 P----DRVMQELMEYNL------------------------------VPE---EWGGDTIFCKLSAKTKEGLDHLLEMIL 166 (178)
T ss_dssp H----HHHHHHHTTTTC------------------------------CBT---TTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred H----HHHHHHHHhcCc------------------------------Chh---HcCCcccEEEEecCCCCCHHHHHHHHH
Confidence 1 111111111110 000 011236788999999999999999999
Q ss_pred HHHHHhhhh
Q psy12099 161 DIIQRMHLR 169 (174)
Q Consensus 161 ~~i~~~~~~ 169 (174)
+.+....++
T Consensus 167 ~~~~~~~~~ 175 (178)
T 2lkc_A 167 LVSEMEELK 175 (178)
T ss_dssp HHHHHTTTT
T ss_pred Hhhhhhccc
Confidence 988776654
No 113
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.59 E-value=5.2e-15 Score=107.09 Aligned_cols=102 Identities=13% Similarity=0.011 Sum_probs=71.7
Q ss_pred CeeCCCCchhh------hhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDER------RKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r------~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|+++++ .++..|++ +++++++|+|. ++.++ ...|+..+.. .+.|+++++|
T Consensus 54 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~---~~~~~~~~~~----~~~p~ilv~n 116 (165)
T 2wji_A 54 VVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDA----------TALER---NLYLTLQLME----MGANLLLALN 116 (165)
T ss_dssp EEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEET----------TCHHH---HHHHHHHHHH----TTCCEEEEEE
T ss_pred EEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecC----------CchhH---hHHHHHHHHh----cCCCEEEEEE
Confidence 69999999885 56678886 89999999999 44333 3446666543 2689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+..++.. ... +..+. +. ..+.++++||+++.||
T Consensus 117 K~Dl~~~~~~--~~~-----------------------------~~~~~-~~------------~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 117 KMDLAKSLGI--EID-----------------------------VDKLE-KI------------LGVKVVPLSAAKKMGI 152 (165)
T ss_dssp CHHHHHHTTC--CCC-----------------------------HHHHH-HH------------HTSCEEECBGGGTBSH
T ss_pred chHhccccCh--hhH-----------------------------HHHHH-HH------------hCCCEEEEEcCCCCCH
Confidence 9999654311 001 11111 11 1145789999999999
Q ss_pred HHHHHHHHHHH
Q psy12099 153 RRVFNDCRDII 163 (174)
Q Consensus 153 ~~~f~~~~~~i 163 (174)
+++|+++.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.57 E-value=3.7e-15 Score=118.92 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=80.1
Q ss_pred CeeCCCCchh-----hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHH---HHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDE-----RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLF---KSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~-----r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~---~~i~~~~~~~~~~iilv~N 72 (174)
||||+||+++ +.+|..|+++++++|+|+|+ ++..++.+...|. ..+... .+++|++|++|
T Consensus 56 i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~----------t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~N 123 (307)
T 3r7w_A 56 LWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDV----------ESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLH 123 (307)
T ss_dssp EEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEET----------TCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEE
T ss_pred EEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEEC----------CChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEe
Confidence 6999999999 88999999999999999999 7888888876554 343322 35799999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+..+... . .+.+ ...+++.++... . +-..+.+++|||++ .++
T Consensus 124 K~Dl~~~~~r--~-~~~~---------------------v~~~~~~~~~~~-----~-----g~~~~~~~~tSa~~-~~i 168 (307)
T 3r7w_A 124 KMDLVQLDKR--E-ELFQ---------------------IMMKNLSETSSE-----F-----GFPNLIGFPTSIWD-ESL 168 (307)
T ss_dssp CGGGSCHHHH--H-HHHH---------------------HHHHHHHHHHHT-----T-----TCCSCEEEECCTTS-SHH
T ss_pred cccccchhhh--h-HHHH---------------------HHHHHHHHHHHH-----c-----CCCCeEEEEeeecC-ChH
Confidence 9999762111 0 0000 001122222110 0 00136788999999 899
Q ss_pred HHHHHHHHHHHH
Q psy12099 153 RRVFNDCRDIIQ 164 (174)
Q Consensus 153 ~~~f~~~~~~i~ 164 (174)
.++|..+...++
T Consensus 169 ~e~~~~iv~~li 180 (307)
T 3r7w_A 169 YKAWSQIVCSLI 180 (307)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc
Confidence 999988876543
No 115
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.57 E-value=7.3e-15 Score=109.39 Aligned_cols=112 Identities=20% Similarity=0.214 Sum_probs=86.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+++++.+|..|+++++++|+|+|+ ++..++.+...|+..+... ...+.|+++++||+|+...+
T Consensus 58 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~ 126 (199)
T 2f9l_A 58 IWDTAGQERYRRITSAYYRGAVGALLVYDI----------AKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLR 126 (199)
T ss_dssp EEECSSGGGTTCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGC
T ss_pred EEECCCchhhhhhhHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccccccc
Confidence 599999999999999999999999999999 7888888877787766432 23468999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.|..+... ..+.+..|||+++.+++++|+.+.
T Consensus 127 ~~------------------------------~~~~a~~l~~~-------------~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 127 AV------------------------------PTDEARAFAEK-------------NNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred Cc------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11 12234444221 235667799999999999999999
Q ss_pred HHHHHh
Q psy12099 161 DIIQRM 166 (174)
Q Consensus 161 ~~i~~~ 166 (174)
+.+.+.
T Consensus 164 ~~~~~~ 169 (199)
T 2f9l_A 164 TEIYRI 169 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 116
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.55 E-value=5.4e-15 Score=117.70 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=73.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
|||| |++++.+|+.||++++++|+|+|+ +++. ++.....|+..+.. .++|++||+||+||..+
T Consensus 67 iwD~--qer~~~l~~~~~~~ad~vilV~D~----------~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 67 IENV--LHRKNLLTKPHVANVDQVILVVTV----------KMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDE 130 (301)
T ss_dssp EEEE--CCCSCEETTTTEESCCEEEEEECS----------STTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH
T ss_pred EEEE--ccccceeeccccccCCEEEEEEeC----------CCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCc
Confidence 6999 999999999999999999999999 6665 56666667665532 47899999999999654
Q ss_pred HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099 80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159 (174)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~ 159 (174)
... +++.++.. .+ . .. +.+++|||+++.||+++|..+
T Consensus 131 ~~v--------------------------------~~~~~~~~-~~----~-----~~-~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 131 DDL--------------------------------RKVRELEE-IY----S-----GL-YPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp HHH--------------------------------HHHHHHHH-HH----T-----TT-SCEEECCTTTCTTHHHHHHHH
T ss_pred hhH--------------------------------HHHHHHHH-HH----h-----hh-CcEEEEECCCCcCHHHHHHHh
Confidence 211 11111111 11 1 11 567789999999999999876
Q ss_pred H
Q psy12099 160 R 160 (174)
Q Consensus 160 ~ 160 (174)
.
T Consensus 168 ~ 168 (301)
T 1u0l_A 168 K 168 (301)
T ss_dssp S
T ss_pred c
Confidence 5
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.52 E-value=1.8e-14 Score=102.83 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=70.6
Q ss_pred CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099 1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK 73 (174)
+|||+|++. ++..|..++++++++|+|+|. ++..+. ...++..++.. .+.|+++++||
T Consensus 53 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK 117 (161)
T 2dyk_A 53 LVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDG----------RAELTQ--ADYEVAEYLRR---KGKPVILVATK 117 (161)
T ss_dssp EEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEES----------SSCCCH--HHHHHHHHHHH---HTCCEEEEEEC
T ss_pred EEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEEC----------CCcccH--hHHHHHHHHHh---cCCCEEEEEEC
Confidence 699999987 577888999999999999999 443222 12333333333 46899999999
Q ss_pred CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099 74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR 153 (174)
Q Consensus 74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~ 153 (174)
+|+..+.. .+.++. .++ ...++++||+++.||+
T Consensus 118 ~Dl~~~~~-----~~~~~~-~~~-----------------------------------------~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 118 VDDPKHEL-----YLGPLY-GLG-----------------------------------------FGDPIPTSSEHARGLE 150 (161)
T ss_dssp CCSGGGGG-----GCGGGG-GGS-----------------------------------------SCSCEECBTTTTBSHH
T ss_pred cccccchH-----hHHHHH-hCC-----------------------------------------CCCeEEEecccCCChH
Confidence 99976521 112221 111 0146789999999999
Q ss_pred HHHHHHHHHH
Q psy12099 154 RVFNDCRDII 163 (174)
Q Consensus 154 ~~f~~~~~~i 163 (174)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987653
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.51 E-value=7.3e-14 Score=106.22 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=76.1
Q ss_pred CeeCCCC------chh---hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH--HHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQ------RDE---RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL--RESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq------~~~---r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~--~~~~~~~~~i~~~~~~~~~~iil 69 (174)
||||+|+ ++. ...+..+++.++++|+|+|+ ++..++ .....|+..+... ..+.|++|
T Consensus 80 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~l~~~--~~~~piil 147 (228)
T 2qu8_A 80 IIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDI----------SEQCGLTIKEQINLFYSIKSV--FSNKSIVI 147 (228)
T ss_dssp EEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEET----------TCTTSSCHHHHHHHHHHHHTC--C-CCCEEE
T ss_pred EEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEec----------ccccCcchHHHHHHHHHHHHh--hcCCcEEE
Confidence 6999999 441 12345578899999999999 555554 3345667666543 34789999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
|+||+|+...... ... ..+.+..+... ....+.++++||+++
T Consensus 148 v~nK~Dl~~~~~~--~~~-------------------------~~~~~~~~~~~-----------~~~~~~~~~~SA~~g 189 (228)
T 2qu8_A 148 GFNKIDKCNMDSL--SID-------------------------NKLLIKQILDN-----------VKNPIKFSSFSTLTG 189 (228)
T ss_dssp EEECGGGCC--CC--CHH-------------------------HHHHHHHHHHH-----------CCSCEEEEECCTTTC
T ss_pred EEeCcccCCchhh--HHH-------------------------HHHHHHHHHHh-----------cCCCceEEEEecccC
Confidence 9999999654211 000 01112222110 012267889999999
Q ss_pred hhHHHHHHHHHHHHHHhh
Q psy12099 150 ENIRRVFNDCRDIIQRMH 167 (174)
Q Consensus 150 ~~i~~~f~~~~~~i~~~~ 167 (174)
.||.++|+++.+.+.+..
T Consensus 190 ~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 190 VGVEQAKITACELLKNDQ 207 (228)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 119
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.51 E-value=9.6e-14 Score=102.35 Aligned_cols=108 Identities=10% Similarity=0.099 Sum_probs=74.9
Q ss_pred CeeCCC----------CchhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGG----------QRDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~G----------q~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i 67 (174)
+|||+| ++.++.+|..|++++ +++|+|+|. ++..+..+. .++..+ .. .+.|+
T Consensus 73 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~-~~~~~~-~~---~~~p~ 137 (195)
T 1svi_A 73 FVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDL----------RHAPSNDDV-QMYEFL-KY---YGIPV 137 (195)
T ss_dssp EEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCCHHHH-HHHHHH-HH---TTCCE
T ss_pred EEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEEC----------CCCCCHHHH-HHHHHH-HH---cCCCE
Confidence 699999 999999999999887 999999999 555554442 222222 21 46899
Q ss_pred EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099 68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV 147 (174)
Q Consensus 68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~ 147 (174)
++++||+|+..+... .. ..+++.+ .+ +....+.++++||+
T Consensus 138 i~v~nK~Dl~~~~~~------~~----------------------~~~~~~~----~~--------~~~~~~~~~~~Sa~ 177 (195)
T 1svi_A 138 IVIATKADKIPKGKW------DK----------------------HAKVVRQ----TL--------NIDPEDELILFSSE 177 (195)
T ss_dssp EEEEECGGGSCGGGH------HH----------------------HHHHHHH----HH--------TCCTTSEEEECCTT
T ss_pred EEEEECcccCChHHH------HH----------------------HHHHHHH----HH--------cccCCCceEEEEcc
Confidence 999999999754211 00 0111111 11 11234678899999
Q ss_pred cchhHHHHHHHHHHHH
Q psy12099 148 DTENIRRVFNDCRDII 163 (174)
Q Consensus 148 d~~~i~~~f~~~~~~i 163 (174)
++.||+++|+++.+.+
T Consensus 178 ~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 178 TKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 120
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.50 E-value=3.7e-14 Score=105.16 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=83.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+||++|+++++.+|..|+++++++++|+|+ ++..++.....|+..+... ...+.|+++++||+|+...+
T Consensus 82 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~ 150 (191)
T 1oix_A 82 IWDTAGLERYRAITSAYYRGAVGALLVYDI----------AKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLR 150 (191)
T ss_dssp EEEECSCCSSSCCCHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGC
T ss_pred EEECCCCcchhhhhHHHhhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccccc
Confidence 599999999999999999999999999999 7777887777777765432 23468999999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. ..+.|..+..+ ..+.+..|||+|+.+++++|+.+.
T Consensus 151 ~~------------------------------~~~~a~~l~~~-------------~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 151 AV------------------------------PTDEARAFAEK-------------NGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 11 12334444321 235667799999999999999998
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=6.2e-14 Score=102.82 Aligned_cols=105 Identities=12% Similarity=0.018 Sum_probs=75.2
Q ss_pred CeeCCCCchhh------hhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDER------RKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r------~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|++.++ .+|..|++ +++++++|+|. ++ +.....|+..+.. .+.|++|++|
T Consensus 58 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~---~~~~~~~~~~~~~----~~~piilv~n 120 (188)
T 2wjg_A 58 VVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDA----------TA---LERNLYLTLQLME----MGANLLLALN 120 (188)
T ss_dssp EEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEG----------GG---HHHHHHHHHHHHT----TTCCEEEEEE
T ss_pred EEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecc----------hh---HHHHHHHHHHHHh----cCCCEEEEEE
Confidence 69999999885 57888886 59999999999 33 4445566666654 3689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+..+... .... ..+. +. ..+.++++||+++.||
T Consensus 121 K~Dl~~~~~~--~~~~-----------------------------~~~~-~~------------~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 121 KMDLAKSLGI--EIDV-----------------------------DKLE-KI------------LGVKVVPLSAAKKMGI 156 (188)
T ss_dssp CHHHHHHTTC--CCCH-----------------------------HHHH-HH------------HTSCEEECBGGGTBSH
T ss_pred hhhccccccc--hHHH-----------------------------HHHH-HH------------hCCCeEEEEecCCCCH
Confidence 9999764321 1111 1111 10 1245789999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy12099 153 RRVFNDCRDIIQRM 166 (174)
Q Consensus 153 ~~~f~~~~~~i~~~ 166 (174)
.++|+++.+.+...
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887544
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=2.5e-15 Score=113.15 Aligned_cols=145 Identities=11% Similarity=0.137 Sum_probs=87.1
Q ss_pred CeeCCCCchhhhhHhhhhcC----CCEEEEEEeCCCccccccCCC-CcchHHHHHHHHHHHHcCC---CCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRKWIQCFND----VTAIIFVTACSSYNMVLREDP-TQNRLRESLDLFKSIWNNR---WLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~----~~~ii~v~d~s~~~~~~~e~~-~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~N 72 (174)
+|||+|++.++..|..|+++ ++++|+|+|. + +..++.....|+..++... ...++|++|++|
T Consensus 59 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 59 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS----------TVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp EEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEET----------TSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred EEECCCcHHHHHHHHHHHHhccccCCEEEEEEEC----------CCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 59999999999999999988 8999999999 6 7788888888888887643 235799999999
Q ss_pred CCchhhHHHhc-----cccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099 73 KQDLLAEKVKA-----GKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV 147 (174)
Q Consensus 73 K~Dl~~~~~~~-----~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~ 147 (174)
|+|+..+.... -...+..+...++....++||++|.+. +...+...+... ....-. .-...++....|+.
T Consensus 129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~--~~~~~~~~l~~~-~~f~~~--~~~~~v~~~~~s~~ 203 (218)
T 1nrj_B 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEED--YAENTLDVLQST-DGFKFA--NLEASVVAFEGSIN 203 (218)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC----------------CTTC-----CCCGG--GSSSCEEEEECBTT
T ss_pred chHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc--chhhhcccccCC-CCcccc--ccCCceEEEecccc
Confidence 99997542110 011233443444445567888877553 233333222221 111000 11234667777777
Q ss_pred cchhHHHHHHHHHH
Q psy12099 148 DTENIRRVFNDCRD 161 (174)
Q Consensus 148 d~~~i~~~f~~~~~ 161 (174)
.+ +|.++++++.+
T Consensus 204 ~~-~i~~~~~~~~~ 216 (218)
T 1nrj_B 204 KR-KISQWREWIDE 216 (218)
T ss_dssp TT-BCHHHHHHHHH
T ss_pred CC-cHHHHHHHHHh
Confidence 66 68888888865
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.48 E-value=1.2e-13 Score=101.47 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=73.4
Q ss_pred CeeCCC----------CchhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcch--HHHHHHHHHHHHcCCCCCCC
Q psy12099 1 MFDVGG----------QRDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNR--LRESLDLFKSIWNNRWLRTI 65 (174)
Q Consensus 1 iwD~~G----------q~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~--~~~~~~~~~~i~~~~~~~~~ 65 (174)
+|||+| ++.++.+|..|++++ +++++|+|. ++..+ ......|+... +.
T Consensus 72 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~----------~~~~~~~~~~~~~~~~~~-------~~ 134 (195)
T 3pqc_A 72 FVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDG----------RIPPQDSDLMMVEWMKSL-------NI 134 (195)
T ss_dssp EEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCCHHHHHHHHHHHHT-------TC
T ss_pred EEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecC----------CCCCCHHHHHHHHHHHHc-------CC
Confidence 699999 889999999999876 899999998 33322 22333343332 68
Q ss_pred cEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecc
Q psy12099 66 SVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTC 145 (174)
Q Consensus 66 ~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~ts 145 (174)
|+++|+||+|+..+... .. ..+.+.++. . ....+.++++|
T Consensus 135 p~i~v~nK~Dl~~~~~~--~~--------------------------~~~~~~~~~--------~----~~~~~~~~~~S 174 (195)
T 3pqc_A 135 PFTIVLTKMDKVKMSER--AK--------------------------KLEEHRKVF--------S----KYGEYTIIPTS 174 (195)
T ss_dssp CEEEEEECGGGSCGGGH--HH--------------------------HHHHHHHHH--------H----SSCCSCEEECC
T ss_pred CEEEEEEChhcCChHHH--HH--------------------------HHHHHHHHH--------h----hcCCCceEEEe
Confidence 99999999999643211 00 111122221 1 11235788999
Q ss_pred cccchhHHHHHHHHHHHHHH
Q psy12099 146 AVDTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 146 A~d~~~i~~~f~~~~~~i~~ 165 (174)
|+++.||+++|+++.+.+.+
T Consensus 175 a~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 175 SVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999987743
No 124
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.47 E-value=2e-14 Score=104.88 Aligned_cols=102 Identities=15% Similarity=0.255 Sum_probs=70.4
Q ss_pred CeeCCCCchhh---------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQRDER---------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~~~r---------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~ 71 (174)
+|||+|++++. +.| .++++++++|+|+|. ++..++. ...|+..+.+. ...++|++||+
T Consensus 56 l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~----------~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~ 122 (172)
T 2gj8_A 56 IIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDG----------TTTDAVD-PAEIWPEFIAR-LPAKLPITVVR 122 (172)
T ss_dssp EEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEET----------TTCCCCS-HHHHCHHHHHH-SCTTCCEEEEE
T ss_pred EEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEEC----------CCCCCHH-HHHHHHHHHHh-cccCCCEEEEE
Confidence 69999997532 123 478999999999999 5555544 34666665543 23578999999
Q ss_pred eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099 72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN 151 (174)
Q Consensus 72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~ 151 (174)
||+|+..+.. .. +......+++|||+++.|
T Consensus 123 NK~Dl~~~~~-----~~---------------------------------------------~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 123 NKADITGETL-----GM---------------------------------------------SEVNGHALIRLSARTGEG 152 (172)
T ss_dssp ECHHHHCCCC-----EE---------------------------------------------EEETTEEEEECCTTTCTT
T ss_pred ECccCCcchh-----hh---------------------------------------------hhccCCceEEEeCCCCCC
Confidence 9999853211 00 001125678999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12099 152 IRRVFNDCRDIIQR 165 (174)
Q Consensus 152 i~~~f~~~~~~i~~ 165 (174)
|+++|+++.+.+-.
T Consensus 153 v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 153 VDVLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999877643
No 125
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.47 E-value=1.3e-14 Score=106.33 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=76.2
Q ss_pred CeeCCC-----------CchhhhhHhhhhcC-CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHH---------HHcC
Q psy12099 1 MFDVGG-----------QRDERRKWIQCFND-VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKS---------IWNN 59 (174)
Q Consensus 1 iwD~~G-----------q~~~r~~w~~y~~~-~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~---------i~~~ 59 (174)
+|||+| +++++..|..|+++ ++++++|+++ .+..++......|.. +...
T Consensus 48 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v----------~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (190)
T 2cxx_A 48 IIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLV----------VDGKAAPEIIKRWEKRGEIPIDVEFYQF 117 (190)
T ss_dssp EEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEE----------EETTHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred EEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEE----------EcchhhhhHHHhhhccCccHHHHHHHHH
Confidence 599999 89999999999987 8877777777 566666665322221 1111
Q ss_pred CCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCC--Cc
Q psy12099 60 RWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDG--KH 137 (174)
Q Consensus 60 ~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~--~~ 137 (174)
....+.|+++++||+|+..+. . ..++++...++ .. ..
T Consensus 118 ~~~~~~piilv~nK~Dl~~~~-~---~~~~~~~~~~~-------------------------------------~~~~~~ 156 (190)
T 2cxx_A 118 LRELDIPTIVAVNKLDKIKNV-Q---EVINFLAEKFE-------------------------------------VPLSEI 156 (190)
T ss_dssp HHHTTCCEEEEEECGGGCSCH-H---HHHHHHHHHHT-------------------------------------CCGGGH
T ss_pred HHhcCCceEEEeehHhccCcH-H---HHHHHHHHHhh-------------------------------------hhhhcc
Confidence 112478999999999997543 1 01111111111 00 00
Q ss_pred ceeeeecccccchhHHHHHHHHHHHHHHhh
Q psy12099 138 YCYPHFTCAVDTENIRRVFNDCRDIIQRMH 167 (174)
Q Consensus 138 ~~~~~~tsA~d~~~i~~~f~~~~~~i~~~~ 167 (174)
...++++||+++.||+++|+++.+.+.+..
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 134689999999999999999999887654
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.40 E-value=1.6e-12 Score=97.81 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=74.2
Q ss_pred CeeCCC----------CchhhhhHhhhhcC---CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGG----------QRDERRKWIQCFND---VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~G----------q~~~r~~w~~y~~~---~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i 67 (174)
||||+| ++.++.++..|++. ++++|+|+|. ++.-+ .....++..+.. .+.|+
T Consensus 83 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~----------~~~~~-~~~~~~~~~l~~----~~~p~ 147 (223)
T 4dhe_A 83 LVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDA----------RRPLT-ELDRRMIEWFAP----TGKPI 147 (223)
T ss_dssp EEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCC-HHHHHHHHHHGG----GCCCE
T ss_pred EEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeC----------CCCCC-HHHHHHHHHHHh----cCCCE
Confidence 699999 67778888899887 6779999999 33322 222334444332 46899
Q ss_pred EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099 68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV 147 (174)
Q Consensus 68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~ 147 (174)
++|+||+|+...... . .....+.+.+...... .......++++||+
T Consensus 148 i~v~nK~Dl~~~~~~--~------------------------------~~~~~~~~~l~~~~~~--~~~~~~~~~~~SA~ 193 (223)
T 4dhe_A 148 HSLLTKCDKLTRQES--I------------------------------NALRATQKSLDAYRDA--GYAGKLTVQLFSAL 193 (223)
T ss_dssp EEEEECGGGSCHHHH--H------------------------------HHHHHHHHHHHHHHHH--TCCSCEEEEEEBTT
T ss_pred EEEEeccccCChhhH--H------------------------------HHHHHHHHHHHhhhhc--ccCCCCeEEEeecC
Confidence 999999999754321 0 0111111111111000 01234678899999
Q ss_pred cchhHHHHHHHHHHHHHHh
Q psy12099 148 DTENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 148 d~~~i~~~f~~~~~~i~~~ 166 (174)
++.||.++|+++.+.+...
T Consensus 194 ~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 194 KRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TTBSHHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHhcCcc
Confidence 9999999999999887543
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.39 E-value=6.6e-13 Score=104.30 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=67.4
Q ss_pred CeeCCCCchhh------hhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDER------RKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r------~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|+++++ .++..|+. +++++|+|+|. ++.++ ...|...+.. .+.|++|++|
T Consensus 53 l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~----------t~~e~---~~~~~~~l~~----~~~p~ilv~N 115 (272)
T 3b1v_A 53 IQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDA----------TNLER---NLYLTTQLIE----TGIPVTIALN 115 (272)
T ss_dssp EEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEG----------GGHHH---HHHHHHHHHH----TCSCEEEEEE
T ss_pred EEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecC----------CchHh---HHHHHHHHHh----cCCCEEEEEE
Confidence 69999999987 67888886 69999999999 45433 3455555543 3689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR 116 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 116 (174)
|+|+...+.. ......+...++.+..++||++|.|.++.++.
T Consensus 116 K~Dl~~~~~~--~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~ 157 (272)
T 3b1v_A 116 MIDVLDGQGK--KINVDKLSYHLGVPVVATSALKQTGVDQVVKK 157 (272)
T ss_dssp CHHHHHHTTC--CCCHHHHHHHHTSCEEECBTTTTBSHHHHHHH
T ss_pred ChhhCCcCCc--HHHHHHHHHHcCCCEEEEEccCCCCHHHHHHH
Confidence 9999765422 23444444445555667777777775443333
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.39 E-value=3.5e-13 Score=112.79 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=76.7
Q ss_pred CeeCCC----------CchhhhhHhh-hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGG----------QRDERRKWIQ-CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~G----------q~~~r~~w~~-y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
||||+| +++|+.++.. |++.++++|+|+|. ++.-. .....++..+.. .+.|++|
T Consensus 247 l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~----------~~~~~-~~~~~~~~~~~~----~~~~~il 311 (456)
T 4dcu_A 247 IVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG----------EEGII-EQDKRIAGYAHE----AGKAVVI 311 (456)
T ss_dssp ETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEET----------TTCCC-HHHHHHHHHHHH----TTCEEEE
T ss_pred EEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCcC-HHHHHHHHHHHH----cCCCEEE
Confidence 699999 8999998775 78999999999999 33222 233344444433 4689999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
++||+|+..+.. ...+++.+++.+.+... ....++++||++|
T Consensus 312 v~NK~Dl~~~~~------------------------------~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~g 353 (456)
T 4dcu_A 312 VVNKWDAVDKDE------------------------------STMKEFEENIRDHFQFL--------DYAPILFMSALTK 353 (456)
T ss_dssp EEECGGGSCCCS------------------------------SHHHHHHHHHHHHCGGG--------TTSCEEECCTTTC
T ss_pred EEEChhcCCCch------------------------------HHHHHHHHHHHHhcccC--------CCCCEEEEcCCCC
Confidence 999999864321 12333444444332211 1245778999999
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy12099 150 ENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 150 ~~i~~~f~~~~~~i~~~ 166 (174)
.||.++|+.+.+.+.+.
T Consensus 354 ~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 354 KRIHTLMPAIIKASENH 370 (456)
T ss_dssp TTGGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999888877544
No 129
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.36 E-value=1.6e-12 Score=101.19 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred CeeCCCCchhhhhH------hhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRKW------IQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w------~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
||||+|+.+++..| ..|+ ++++++|+|+|. ++.++ ...|+..+.. .+.|++|++|
T Consensus 56 l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~----------t~~~~---~~~~~~~l~~----~~~pvilv~N 118 (258)
T 3a1s_A 56 LIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADS----------VNPEQ---SLYLLLEILE----MEKKVILAMT 118 (258)
T ss_dssp EEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEET----------TSCHH---HHHHHHHHHT----TTCCEEEEEE
T ss_pred EEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCC----------Cchhh---HHHHHHHHHh----cCCCEEEEEE
Confidence 69999999988644 6676 589999999999 55443 3446666654 2689999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAK 118 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~ 118 (174)
|+|+...+-. .....++...++.+..++||++|.|.++.++.+.
T Consensus 119 K~Dl~~~~~i--~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 119 AIDEAKKTGM--KIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIV 162 (258)
T ss_dssp CHHHHHHTTC--CBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHH
T ss_pred CcCCCCccch--HHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHH
Confidence 9999765432 2344555555555666777777777554444443
No 130
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.35 E-value=6.2e-13 Score=113.29 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=71.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+||+.++..+..|+++++++|+|+|++ +.++ ...|...+.... .+.|++||+||+|+..+.
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s----------~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSR----------TDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSY 166 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGG----------GGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTC
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCC----------Cchh---HHHHHHHHHHhC--CCCCEEEEEECCCccccc
Confidence 6999999999999999999999999999994 3333 345555554332 368999999999997543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI 121 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i 121 (174)
.. ....+.+.++..+.+..++||++|.|.++.++...+.+
T Consensus 167 ~v-~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 167 NI-EQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp CC-CHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred cc-CHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 11 02345566666666667778888877776666555443
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.34 E-value=9.4e-13 Score=102.50 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=57.7
Q ss_pred CeeCCCCchhhh----------hHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099 1 MFDVGGQRDERR----------KWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI 68 (174)
Q Consensus 1 iwD~~Gq~~~r~----------~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii 68 (174)
||||+|+.+++. ++..|+ ++++++|+|+|. ++.++. ..+...+.. .+.|++
T Consensus 52 lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDa----------s~~~~~---~~l~~~l~~----~~~pvi 114 (256)
T 3iby_A 52 ITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDA----------CHLERH---LYLTSQLFE----LGKPVV 114 (256)
T ss_dssp EEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEG----------GGHHHH---HHHHHHHTT----SCSCEE
T ss_pred EEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeC----------CCchhH---HHHHHHHHH----cCCCEE
Confidence 699999988875 677888 999999999999 554433 333334332 268999
Q ss_pred EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCC
Q psy12099 69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPG 109 (174)
Q Consensus 69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g 109 (174)
+++||+|+...+-. ...+..+....+.+..++||++|.|
T Consensus 115 lv~NK~Dl~~~~~~--~~~~~~l~~~lg~~vi~~SA~~g~g 153 (256)
T 3iby_A 115 VALNMMDIAEHRGI--SIDTEKLESLLGCSVIPIQAHKNIG 153 (256)
T ss_dssp EEEECHHHHHHTTC--EECHHHHHHHHCSCEEECBGGGTBS
T ss_pred EEEEChhcCCcCCc--HHHHHHHHHHcCCCEEEEECCCCCC
Confidence 99999999765422 2233333333333344455555544
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.34 E-value=2e-12 Score=101.47 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=46.1
Q ss_pred CeeCCCCchhh----------hhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099 1 MFDVGGQRDER----------RKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI 68 (174)
Q Consensus 1 iwD~~Gq~~~r----------~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii 68 (174)
+|||+|+.+++ .++..|+ ++++++|+|+|. ++.++.. .+...+... +.|++
T Consensus 54 liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~----------~~~~~~~---~~~~~l~~~----~~p~i 116 (274)
T 3i8s_A 54 LVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDA----------SNLERNL---YLTLQLLEL----GIPCI 116 (274)
T ss_dssp EEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEG----------GGHHHHH---HHHHHHHHH----TCCEE
T ss_pred EEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecC----------CChHHHH---HHHHHHHhc----CCCEE
Confidence 69999998877 4456665 799999999999 5544433 333333322 68999
Q ss_pred EEEeCCchhhHH
Q psy12099 69 LFLNKQDLLAEK 80 (174)
Q Consensus 69 lv~NK~Dl~~~~ 80 (174)
+++||+|+....
T Consensus 117 vv~NK~Dl~~~~ 128 (274)
T 3i8s_A 117 VALNMLDIAEKQ 128 (274)
T ss_dssp EEEECHHHHHHT
T ss_pred EEEECccchhhh
Confidence 999999997653
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.33 E-value=1.1e-12 Score=109.28 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=74.9
Q ss_pred CeeCCCC----------chhhhhHh-hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQ----------RDERRKWI-QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq----------~~~r~~w~-~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
||||+|+ |+|+.++. .+++.++++|+|+|. ++..+..+. .|+..+.. .+.|++|
T Consensus 227 l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~----------~~~~s~~~~-~~~~~~~~----~~~~iii 291 (436)
T 2hjg_A 227 IVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG----------EEGIIEQDK-RIAGYAHE----AGKAVVI 291 (436)
T ss_dssp ETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEET----------TTCCCHHHH-HHHHHHHH----TTCEEEE
T ss_pred EEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcC----------CcCCcHHHH-HHHHHHHH----cCCcEEE
Confidence 6999998 77777766 488999999999999 565555443 56665543 3689999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
++||+|+..+... ..++..+.+.+.+... ....++++||++|
T Consensus 292 v~NK~Dl~~~~~~------------------------------~~~~~~~~~~~~l~~~--------~~~~~~~~SA~tg 333 (436)
T 2hjg_A 292 VVNKWDAVDKDES------------------------------TMKEFEENIRDHFQFL--------DYAPILFMSALTK 333 (436)
T ss_dssp EEECGGGSCCCTT------------------------------HHHHHHHHHHHHCGGG--------TTSCEEECCTTTC
T ss_pred EEECccCCCcchH------------------------------HHHHHHHHHHHhcccC--------CCCCEEEEecccC
Confidence 9999998653210 1112222222222111 1245678888888
Q ss_pred hhHHHHHHHHHHHHHH
Q psy12099 150 ENIRRVFNDCRDIIQR 165 (174)
Q Consensus 150 ~~i~~~f~~~~~~i~~ 165 (174)
.||.++|+.+.+.+.+
T Consensus 334 ~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 334 KRIHTLMPAIIKASEN 349 (436)
T ss_dssp TTGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888776654
No 134
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.32 E-value=4e-12 Score=101.34 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=64.6
Q ss_pred CeeCCCCch----------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQRD----------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq~~----------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv 70 (174)
+|||+|+.. +...+..++++++++|+|+|. ++..+..+...|+..+.. .+.|+++|
T Consensus 63 lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~----------~~~~~~~~~~~~~~~l~~----~~~pvilV 128 (308)
T 3iev_A 63 FLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDA----------TEGWRPRDEEIYQNFIKP----LNKPVIVV 128 (308)
T ss_dssp EEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEET----------TTBSCHHHHHHHHHHTGG----GCCCEEEE
T ss_pred EEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeC----------CCCCCchhHHHHHHHHHh----cCCCEEEE
Confidence 699999954 447888999999999999999 666666665555666543 36899999
Q ss_pred EeCCchh-hHHHhccccchhhhhhccC--CCCCCCCCCCCCCCChHHH
Q psy12099 71 LNKQDLL-AEKVKAGKSRLEDYFQEFT--RYQTPLDATPDPGEDPIVI 115 (174)
Q Consensus 71 ~NK~Dl~-~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~~~~~~ 115 (174)
+||+|+. ..... ...+..+...++ ....++||++|.|.++.++
T Consensus 129 ~NK~Dl~~~~~~~--~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 129 INKIDKIGPAKNV--LPLIDEIHKKHPELTEIVPISALKGANLDELVK 174 (308)
T ss_dssp EECGGGSSSGGGG--HHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHH
T ss_pred EECccCCCCHHHH--HHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHH
Confidence 9999997 32211 112222222222 2345666666666443333
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.29 E-value=9.2e-12 Score=102.66 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=77.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.|...+..++..++++|+|+|. ++..++....+++..+... ...|+++++||+|+....
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda----------~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAA----------NEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEET----------TSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEEC----------CCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchH
Confidence 699999999999999999999999999999 5555556666666544321 235899999999997543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .. ..++..+++ .. .....+.++.+||+++.||.++|+.+.
T Consensus 146 ~~--~~--------------------------~~~~i~~~l----~~------~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 146 EA--LS--------------------------QYRQIKQFT----KG------TWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp HH--HH--------------------------HHHHHHHHH----TT------STTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HH--HH--------------------------HHHHHHHHH----Hh------hCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 11 00 011111111 00 111245678999999999999999988
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 188 ~~l 190 (403)
T 3sjy_A 188 EYI 190 (403)
T ss_dssp HHS
T ss_pred HhC
Confidence 755
No 136
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.27 E-value=2.2e-11 Score=95.06 Aligned_cols=96 Identities=20% Similarity=0.212 Sum_probs=66.3
Q ss_pred CeeCCCCchhhh------hHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERR------KWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~------~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
||||+|+.++.. ++..|+ .+++++|+|+|. ++. .....++..+... ...|+++++|
T Consensus 54 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~----------~~~---~~~~~~~~~~~~~---~~~p~ilv~N 117 (271)
T 3k53_A 54 VVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDS----------TCL---MRNLFLTLELFEM---EVKNIILVLN 117 (271)
T ss_dssp EEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEG----------GGH---HHHHHHHHHHHHT---TCCSEEEEEE
T ss_pred EEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecC----------Ccc---hhhHHHHHHHHhc---CCCCEEEEEE
Confidence 699999999887 788888 789999999999 443 4455666666543 2389999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIV 114 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~ 114 (174)
|+|+...+-. ......+...++.+..|+||++|.|.++.+
T Consensus 118 K~Dl~~~~~~--~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 118 KFDLLKKKGA--KIDIKKMRKELGVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp CHHHHHHHTC--CCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred ChhcCccccc--HHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence 9999865433 233444444444555566666666643333
No 137
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.26 E-value=2.2e-11 Score=96.84 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=57.9
Q ss_pred CeeCCCCch--------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRD--------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~--------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|+.. +...+..++++++++|+|+|. ++.-+.. ..|+...+... ..+.|+++|+|
T Consensus 59 l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~----------~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~N 125 (301)
T 1wf3_A 59 FVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDL----------RHPPTPE--DELVARALKPL-VGKVPILLVGN 125 (301)
T ss_dssp EEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEET----------TSCCCHH--HHHHHHHHGGG-TTTSCEEEEEE
T ss_pred EecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEEC----------CCCCChH--HHHHHHHHHhh-cCCCCEEEEEE
Confidence 699999976 667778899999999999999 4432222 23443333332 24789999999
Q ss_pred CCchhhHHH-hccccchhhhhhccCCCCCCCCCCCCCC
Q psy12099 73 KQDLLAEKV-KAGKSRLEDYFQEFTRYQTPLDATPDPG 109 (174)
Q Consensus 73 K~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~g 109 (174)
|+|+..+.. . ...+++++ .+ ....|+||++|.|
T Consensus 126 K~Dl~~~~~~~--~~~~~~~~-~~-~~~~~iSA~~g~g 159 (301)
T 1wf3_A 126 KLDAAKYPEEA--MKAYHELL-PE-AEPRMLSALDERQ 159 (301)
T ss_dssp CGGGCSSHHHH--HHHHHHTS-TT-SEEEECCTTCHHH
T ss_pred CcccCCchHHH--HHHHHHhc-Cc-CcEEEEeCCCCCC
Confidence 999974321 1 11222221 11 1245677776655
No 138
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.8e-12 Score=95.37 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=59.6
Q ss_pred CeeCCCCchhhhhHhhhhcC----CCEEEEEEeCCCccccccCCC-CcchHHHHHHHHHHHHcCCC---CCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRKWIQCFND----VTAIIFVTACSSYNMVLREDP-TQNRLRESLDLFKSIWNNRW---LRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~----~~~ii~v~d~s~~~~~~~e~~-~~~~~~~~~~~~~~i~~~~~---~~~~~iilv~N 72 (174)
+|||+|++.++..|..|+++ ++++|+|+|+ + +..++.....|+..++.... ..+.|++||+|
T Consensus 95 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 164 (193)
T 2ged_A 95 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS----------TVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 164 (193)
T ss_dssp EEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEET----------TCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred EEECCCCchHHHHHHHHHHhhcccCCEEEEEEEC----------CCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEE
Confidence 69999999999999999987 8999999999 6 78889998899888875432 25789999999
Q ss_pred CCchhhH
Q psy12099 73 KQDLLAE 79 (174)
Q Consensus 73 K~Dl~~~ 79 (174)
|+|+..+
T Consensus 165 K~Dl~~~ 171 (193)
T 2ged_A 165 KSELFTA 171 (193)
T ss_dssp CTTSTTC
T ss_pred chHhcCC
Confidence 9999754
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.24 E-value=2.9e-11 Score=100.69 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=46.1
Q ss_pred CeeCCCCch---------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQRD---------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~~---------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~ 71 (174)
||||||++. ++..+..|+++++++|||+|. ++.-+..+ .++..+++. .+.|++|++
T Consensus 53 l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~----------~~~~~~~d--~~i~~~l~~---~~~p~ilv~ 117 (439)
T 1mky_A 53 LVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDG----------KRGITKED--ESLADFLRK---STVDTILVA 117 (439)
T ss_dssp EEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEET----------TTCCCHHH--HHHHHHHHH---HTCCEEEEE
T ss_pred EEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCCCHHH--HHHHHHHHH---cCCCEEEEE
Confidence 699999764 577899999999999999999 44322221 223333332 268999999
Q ss_pred eCCchhhH
Q psy12099 72 NKQDLLAE 79 (174)
Q Consensus 72 NK~Dl~~~ 79 (174)
||+|+...
T Consensus 118 NK~D~~~~ 125 (439)
T 1mky_A 118 NKAENLRE 125 (439)
T ss_dssp ESCCSHHH
T ss_pred eCCCCccc
Confidence 99998653
No 140
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.21 E-value=1.1e-11 Score=105.71 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=50.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+||+.|..++..+++.++++|+|+|. ++. .+....+.+..+.. .++|+++++||+|+...
T Consensus 56 ~iDTPGhe~f~~~~~~~~~~aD~vILVVDa----------~dg-~~~qt~e~l~~~~~----~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 56 FLDTPGHAAFSAMRARGTQVTDIVILVVAA----------DDG-VMKQTVESIQHAKD----AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp CEECSSSCCTTTSBBSSSBSBSSCEEECBS----------SSC-CCHHHHHHHHHHHT----TTCCEEECCBSGGGTTT
T ss_pred EEECCChHHHHHHHHHHHccCCEEEEEEEC----------CCC-ccHHHHHHHHHHHH----cCCcEEEEEeccccccc
Confidence 799999999999999999999999999999 332 23344455554432 36799999999999754
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.19 E-value=4.2e-11 Score=99.67 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=43.6
Q ss_pred CeeCCCCc--------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQR--------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~--------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
||||+|++ .++..|..++++++++|||+|. .+..+..+ .++..++.. .+.|++|++|
T Consensus 55 l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~----------~~~~~~~d--~~~~~~l~~---~~~pvilv~N 119 (436)
T 2hjg_A 55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNG----------REGVTAAD--EEVAKILYR---TKKPVVLAVN 119 (436)
T ss_dssp EEC---------CHHHHHHHHHHHHHHHCSEEEEEEET----------TTCSCHHH--HHHHHHHTT---CCSCEEEEEE
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeC----------CCCCCHHH--HHHHHHHHH---cCCCEEEEEE
Confidence 69999996 7899999999999999999999 44433332 344455543 4689999999
Q ss_pred CCchhhH
Q psy12099 73 KQDLLAE 79 (174)
Q Consensus 73 K~Dl~~~ 79 (174)
|+|+...
T Consensus 120 K~D~~~~ 126 (436)
T 2hjg_A 120 KLDNTEM 126 (436)
T ss_dssp CCCC---
T ss_pred CccCccc
Confidence 9998754
No 142
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.18 E-value=4e-11 Score=100.96 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=37.8
Q ss_pred CeeCCCCchhhhhH--------hhhhcCCCEEEEEEeCCCccccccCCCCcchHH---HHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRDERRKW--------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLR---ESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r~~w--------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~---~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|++.++..| ..++++++++|+|+|. ++..++. ....++..+ .+.|+++
T Consensus 285 liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~----------s~~~s~~~~~~~~~~l~~l------~~~piIv 348 (476)
T 3gee_A 285 LTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDL----------GTERLDDELTEIRELKAAH------PAAKFLT 348 (476)
T ss_dssp EEC--------------------CCCSSCSEEEEEEET----------TTCSSGGGHHHHHHHHHHC------TTSEEEE
T ss_pred EEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEEC----------CCCcchhhhHHHHHHHHhc------CCCCEEE
Confidence 69999998877554 4578999999999999 4554443 344444432 2689999
Q ss_pred EEeCCchhhH
Q psy12099 70 FLNKQDLLAE 79 (174)
Q Consensus 70 v~NK~Dl~~~ 79 (174)
|+||+|+...
T Consensus 349 V~NK~Dl~~~ 358 (476)
T 3gee_A 349 VANKLDRAAN 358 (476)
T ss_dssp EEECTTSCTT
T ss_pred EEECcCCCCc
Confidence 9999999754
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.17 E-value=4.1e-11 Score=99.50 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=73.5
Q ss_pred CeeCCCCchhhhh-------HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099 1 MFDVGGQRDERRK-------WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~-------w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK 73 (174)
+|||+|++.+..+ +..++++++++|+|+|. ....... .|+..+... +.|+++|+||
T Consensus 87 liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~----------~~~~~~~---~~l~~l~~~----~~piIvV~NK 149 (423)
T 3qq5_A 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS----------APTPYED---DVVNLFKEM----EIPFVVVVNK 149 (423)
T ss_dssp EEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS----------SCCHHHH---HHHHHHHHT----TCCEEEECCC
T ss_pred EEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC----------CChHHHH---HHHHHHHhc----CCCEEEEEeC
Confidence 6999999877654 56689999999999998 3443333 344443322 6899999999
Q ss_pred CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099 74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI 121 (174)
Q Consensus 74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i 121 (174)
+|+..+... ...+++...++....++||++|.|.++.++...+.+
T Consensus 150 ~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 150 IDVLGEKAE---ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CTTTTCCCT---HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred cCCCCccHH---HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 999765321 233445556667789999999999988887776654
No 144
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.16 E-value=1.8e-10 Score=93.39 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=75.6
Q ss_pred CeeCCCCchhh---------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcc--hHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRDER---------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN--RLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r---------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~--~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|+.... .....+...++++|+|+|+ ++.. ++.+...|+..+.... .+.|+++
T Consensus 218 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~----------s~~~~~~~~~~~~~~~~i~~~~--~~~piil 285 (357)
T 2e87_A 218 IIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDP----------SEHCGFPLEEQIHLFEEVHGEF--KDLPFLV 285 (357)
T ss_dssp EEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECT----------TCTTSSCHHHHHHHHHHHHHHT--TTSCEEE
T ss_pred EEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeC----------CccccCCHHHHHHHHHHHHHhc--CCCCEEE
Confidence 69999985431 2223455689999999999 5554 6677778888776532 2789999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT 149 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~ 149 (174)
++||+|+..... ++++.+++.. ..+.++++||++|
T Consensus 286 V~NK~Dl~~~~~--------------------------------~~~~~~~~~~-------------~~~~~~~iSA~~g 320 (357)
T 2e87_A 286 VINKIDVADEEN--------------------------------IKRLEKFVKE-------------KGLNPIKISALKG 320 (357)
T ss_dssp EECCTTTCCHHH--------------------------------HHHHHHHHHH-------------TTCCCEECBTTTT
T ss_pred EEECcccCChHH--------------------------------HHHHHHHHHh-------------cCCCeEEEeCCCC
Confidence 999999865321 1112222210 1245778999999
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy12099 150 ENIRRVFNDCRDIIQRM 166 (174)
Q Consensus 150 ~~i~~~f~~~~~~i~~~ 166 (174)
+||+++|+++.+.+...
T Consensus 321 ~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999887543
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.16 E-value=7.3e-11 Score=97.42 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=66.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.|.+.+......+|++|+|+|. ++......+.+.+..+.. ....|+++++||+|+....
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda----------~~g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAA----------NEPCPQPQTKEHLMALEI---LGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEET----------TSCSSCHHHHHHHHHHHH---TTCCCEEEEEECTTSSCTT
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEEC----------CCCCCCchhHHHHHHHHH---cCCCeEEEEEEccCCCCHH
Confidence 699999999999888888899999999999 432212222233222211 1235899999999996532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. .+.++++.+++.. .....+.++.+||+++.||.++|+.+.
T Consensus 152 ~~----------------------------~~~~~~i~~~l~~----------~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 152 QA----------------------------EENYEQIKEFVKG----------TIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp TT----------------------------TTHHHHHHHHHTT----------STTTTCCEEEC------CHHHHHHHHH
T ss_pred HH----------------------------HHHHHHHHHHHhh----------cCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 11 0122333333211 011235678899999999999999988
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 194 ~~i 196 (408)
T 1s0u_A 194 DFI 196 (408)
T ss_dssp HHS
T ss_pred HhC
Confidence 754
No 146
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.16 E-value=5.4e-11 Score=102.61 Aligned_cols=138 Identities=9% Similarity=-0.025 Sum_probs=78.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+||+.|...+..+++.++++|+|+|. ++.- ...+.+.+..+.. .++|+++++||+|+....
T Consensus 74 liDTPGhe~F~~~~~r~~~~aD~aILVvDa----------~~Gv-~~qT~e~l~~l~~----~~vPiIVViNKiDl~~~~ 138 (594)
T 1g7s_A 74 FIDTPGHEAFTTLRKRGGALADLAILIVDI----------NEGF-KPQTQEALNILRM----YRTPFVVAANKIDRIHGW 138 (594)
T ss_dssp EECCCTTSCCTTSBCSSSBSCSEEEEEEET----------TTCC-CHHHHHHHHHHHH----TTCCEEEEEECGGGSTTC
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEEC----------CCCc-cHhHHHHHHHHHH----cCCeEEEEeccccccccc
Confidence 699999999999999999999999999999 4410 1122223333222 468999999999996431
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhc------CCCCCcceeeeecccccchhHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTA------SGDGKHYCYPHFTCAVDTENIRR 154 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~------~~~~~~~~~~~~tsA~d~~~i~~ 154 (174)
.. .....++. ++++.+.+..+.+.+...-+...+....-. .......+.++.+||++|.||.+
T Consensus 139 ~~---~~~~~~~e--------~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~e 207 (594)
T 1g7s_A 139 RV---HEGRPFME--------TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE 207 (594)
T ss_dssp CC---CTTCCHHH--------HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHH
T ss_pred cc---ccCCchHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchh
Confidence 10 00000111 111111111112222111122222211000 00012446788999999999999
Q ss_pred HHHHHHHHHH
Q psy12099 155 VFNDCRDIIQ 164 (174)
Q Consensus 155 ~f~~~~~~i~ 164 (174)
+++++...+.
T Consensus 208 Ll~~I~~~~~ 217 (594)
T 1g7s_A 208 LLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 9999987664
No 147
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.15 E-value=7.8e-11 Score=97.11 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=49.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
||||+|++.|.+.+..+++.+|++|+|+|. ++.. +....+++..+.. .++| +++++||+|+..
T Consensus 79 iiDtpG~~~f~~~~~~~~~~aD~~ilVvda----------~~g~-~~qt~~~l~~~~~----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 79 HVDCPGHADYIKNMITGAAQMDGAILVVSA----------ADGP-MPQTREHILLARQ----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp EEECCCSGGGHHHHHHHHTTCSSEEEEEET----------TTCC-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEEC----------CCCC-cHHHHHHHHHHHH----cCCCEEEEEEECccccC
Confidence 699999999999999999999999999999 3332 2344556655432 2567 899999999973
No 148
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.14 E-value=6.7e-11 Score=95.68 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred CeeCCCCc----hhhhhHhhhhc---CCCEEEEEEeCCCccccccCCCC---cchHHHHHHHHHHHHcCC-CCCCCcEEE
Q psy12099 1 MFDVGGQR----DERRKWIQCFN---DVTAIIFVTACSSYNMVLREDPT---QNRLRESLDLFKSIWNNR-WLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~----~~r~~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~---~~~~~~~~~~~~~i~~~~-~~~~~~iil 69 (174)
||||+|+. .++.++..|++ .++++|+|+|+ ++ .+.+.+...|..++.... ...+.|++|
T Consensus 210 l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~----------s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~il 279 (342)
T 1lnz_A 210 MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDM----------SGLEGRDPYDDYLTINQELSEYNLRLTERPQII 279 (342)
T ss_dssp EEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEES----------SCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCB
T ss_pred EecCCCCcccccccchhHHHHHHHHHhccEEEEEEEC----------CcccccChHHHHHHHHHHHHHhhhhhcCCCEEE
Confidence 69999964 34556666665 49999999999 45 677777777777775532 246889999
Q ss_pred EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI 121 (174)
Q Consensus 70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i 121 (174)
|+||+|+..+... ...+.+.+... ....++||++++|.++.++...+.+
T Consensus 280 V~NK~Dl~~~~e~--~~~l~~~l~~~-~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 280 VANKMDMPEAAEN--LEAFKEKLTDD-YPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp EEECTTSTTHHHH--HHHHHHHCCSC-CCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred EEECccCCCCHHH--HHHHHHHhhcC-CCEEEEECCCCcCHHHHHHHHHHHH
Confidence 9999999764321 12233333221 4578999999999876666655543
No 149
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.12 E-value=8.5e-11 Score=99.07 Aligned_cols=61 Identities=15% Similarity=0.338 Sum_probs=45.0
Q ss_pred CeeCCCCc-hhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQR-DER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~-~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~ 71 (174)
||||+|++ .+. ..+..+++.++++|+|+|. ++..++.+ .++++. + .+.|+++|+
T Consensus 295 l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~----------s~~~s~~~-~~il~~-l-----~~~piivV~ 357 (482)
T 1xzp_A 295 IVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDA----------SSPLDEED-RKILER-I-----KNKRYLVVI 357 (482)
T ss_dssp EEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEET----------TSCCCHHH-HHHHHH-H-----TTSSEEEEE
T ss_pred EEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecC----------CCCCCHHH-HHHHHH-h-----cCCCEEEEE
Confidence 69999998 553 3345689999999999999 55555543 233333 2 367999999
Q ss_pred eCCchhh
Q psy12099 72 NKQDLLA 78 (174)
Q Consensus 72 NK~Dl~~ 78 (174)
||+|+..
T Consensus 358 NK~DL~~ 364 (482)
T 1xzp_A 358 NKVDVVE 364 (482)
T ss_dssp EECSSCC
T ss_pred ECccccc
Confidence 9999964
No 150
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.12 E-value=2.1e-10 Score=98.86 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=50.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++.|...+..+++.++++|+|+|. ++.........|. .... .+.|+++++||+|+...
T Consensus 77 liDTPGh~dF~~ev~r~l~~aD~aILVVDa----------~~gv~~qt~~~~~-~a~~----~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 77 LIDTPGHVDFSYEVSRALAACEGALLLIDA----------SQGIEAQTVANFW-KAVE----QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp EECCCCSGGGHHHHHHHHHTCSEEEEEEET----------TTBCCHHHHHHHH-HHHH----TTCEEEEEEECTTSTTC
T ss_pred EEECCCcHhHHHHHHHHHHhCCEEEEEEEC----------CCCccHHHHHHHH-HHHH----CCCCEEEEEeccCcccc
Confidence 699999999999999999999999999999 5555544443333 3332 36899999999999653
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.12 E-value=2.1e-10 Score=96.63 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=45.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH------HHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL------RESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~------~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
||||+|+++|.+.+..++++++++|+|+|. ++.... ....+.... +.. ....|++|++||+
T Consensus 115 iiDTPG~~~f~~~~~~~~~~aD~~llVvDa----------~~g~~~~~~~~~~qt~e~~~~-~~~--~~~~~iIvviNK~ 181 (483)
T 3p26_A 115 IVDAPGHRDFVPNAIMGISQADMAILCVDC----------STNAFESGFDLDGQTKEHMLL-ASS--LGIHNLIIAMNKM 181 (483)
T ss_dssp EECCCCCGGGHHHHHHHHTTCSEEEEEEEC----------CC------CCCCHHHHHHHHH-HHH--TTCCCEEEEEECG
T ss_pred EEECCCcHHHHHHHHHhhhhCCEEEEEEEC----------CCCccccccchhhhHHHHHHH-HHH--cCCCcEEEEEECc
Confidence 699999999999999999999999999999 333211 122222222 221 2235799999999
Q ss_pred chhh
Q psy12099 75 DLLA 78 (174)
Q Consensus 75 Dl~~ 78 (174)
|+..
T Consensus 182 Dl~~ 185 (483)
T 3p26_A 182 DNVD 185 (483)
T ss_dssp GGGT
T ss_pred Cccc
Confidence 9975
No 152
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.12 E-value=1.1e-10 Score=96.00 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=47.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
||||+|++.|.+.+..+++.++++|+|+|. ++.. +....+++..+.. .++| +++++||+|+..
T Consensus 70 iiDtpG~~~f~~~~~~~~~~aD~~ilVvda----------~~g~-~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 70 HTDCPGHADYVKNMITGTAPLDGCILVVAA----------NDGP-MPQTREHLLLARQ----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp EEECSSHHHHHHHHHHTSSCCSEEEEEEET----------TTCS-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCS
T ss_pred EEECCChHHHHHHHHhhHhhCCEEEEEEEC----------CCCC-CHHHHHHHHHHHH----cCCCeEEEEEECcccCC
Confidence 699999999999999999999999999999 3322 2334444433322 2577 789999999974
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.11 E-value=1.4e-10 Score=99.98 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=50.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+|++.|...+..+++.++++|+|+|. ++.........|. .... .+.|+++++||+|+...
T Consensus 75 liDTPGh~dF~~ev~~~l~~aD~aILVVDa----------~~gv~~qt~~~~~-~~~~----~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 75 FIDTPGHVDFSYEVSRSLAACEGALLVVDA----------GQGVEAQTLANCY-TAME----MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp EEECCCCGGGHHHHHHHHHHCSEEEEEEET----------TTCCCTHHHHHHH-HHHH----TTCEEEEEEECTTSTTC
T ss_pred EEECCCchHHHHHHHHHHHHCCEEEEEEEC----------CCCCCHHHHHHHH-HHHH----CCCCEEEeeeccCcccc
Confidence 699999999999999999999999999999 4544444333333 3332 36799999999999753
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.11 E-value=2.1e-11 Score=101.55 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=48.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-------HHHHHHHcCCCCCCCcEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-------DLFKSIWNNRWLRTISVILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-------~~~~~i~~~~~~~~~~iilv~NK 73 (174)
||||+|++.|.+.+..+++.++++|+|+|. ++ .+++... +.+..... ..-.|+++++||
T Consensus 88 iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa----------~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK 153 (435)
T 1jny_A 88 IIDAPGHRDFVKNMITGASQADAAILVVSA----------KK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNK 153 (435)
T ss_dssp ECCCSSSTTHHHHHHHTSSCCSEEEEEEEC----------ST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEEC
T ss_pred EEECCCcHHHHHHHHhhhhhcCEEEEEEEC----------CC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEc
Confidence 699999999999999999999999999999 45 5555332 22222111 123479999999
Q ss_pred Cchhh
Q psy12099 74 QDLLA 78 (174)
Q Consensus 74 ~Dl~~ 78 (174)
+|+..
T Consensus 154 ~Dl~~ 158 (435)
T 1jny_A 154 MDLTE 158 (435)
T ss_dssp GGGSS
T ss_pred ccCCC
Confidence 99965
No 155
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.10 E-value=3.3e-10 Score=95.51 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=72.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.|.+.+..+++.+|++|+|+|. ++. ......+.+..+ .. .++|+++++||+|+..+.
T Consensus 77 iiDtPGh~~~~~~~~~~~~~aD~~ilVvda----------~~g-~~~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~ 141 (482)
T 1wb1_A 77 LVDAPGHADLIRAVVSAADIIDLALIVVDA----------KEG-PKTQTGEHMLIL-DH---FNIPIIVVITKSDNAGTE 141 (482)
T ss_dssp ECCCSSHHHHHHHHHHHTTSCCEEEEEEET----------TTC-SCHHHHHHHHHH-HH---TTCCBCEEEECTTSSCHH
T ss_pred EEECCChHHHHHHHHHHHhhCCEEEEEEec----------CCC-ccHHHHHHHHHH-HH---cCCCEEEEEECCCcccch
Confidence 699999999999999999999999999999 331 112222333322 11 357889999999997532
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . . ..++..+++.. . ..-..+.+..+||+++.||.++++.+.
T Consensus 142 ~~--~-~-------------------------~~~~l~~~l~~----~-----~~~~~~~ii~vSA~~g~gI~~L~~~L~ 184 (482)
T 1wb1_A 142 EI--K-R-------------------------TEMIMKSILQS----T-----HNLKNSSIIPISAKTGFGVDELKNLII 184 (482)
T ss_dssp HH--H-H-------------------------HHHHHHHHHHH----S-----SSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred hH--H-H-------------------------HHHHHHHHHhh----h-----cccccceEEEEECcCCCCHHHHHHHHH
Confidence 11 0 0 01112222211 0 001135677899999999999999988
Q ss_pred HHHH
Q psy12099 161 DIIQ 164 (174)
Q Consensus 161 ~~i~ 164 (174)
+.+-
T Consensus 185 ~~i~ 188 (482)
T 1wb1_A 185 TTLN 188 (482)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 8764
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.09 E-value=4.7e-10 Score=95.54 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=50.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
||||+|++.|+..+..+++.++++|+|+|. ++.... ....+|..+.. .++|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~allVvDa----------~~g~~~-~t~~~~~~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDA----------AKGVEP-RTIKLMEVCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEET----------TTCSCH-HHHHHHHHHHT----TTCCEEEEEECTTSCC
T ss_pred EEECCCchhHHHHHHHHHHhCCEEEEEEeC----------CCCCCH-HHHHHHHHHHH----cCCCEEEEEeCCCCcc
Confidence 699999999999999999999999999999 443333 33445555432 3689999999999964
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.08 E-value=3.1e-10 Score=93.61 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=70.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+|||+|++.|.+.+......+|++|+|+|. ++......+.+.+..+.. ....|+++++||+|+....
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda----------~~g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAA----------NEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEET----------TSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEEC----------CCCCCChhHHHHHHHHHH---cCCCcEEEEEECccCCCHH
Confidence 699999999998888888889999999999 432112222222222211 1235899999999997543
Q ss_pred HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099 81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR 160 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~ 160 (174)
.. . +.+++..+|+.. .....+.++.+||+++.||.++|+++.
T Consensus 154 ~~--~--------------------------~~~~~i~~~l~~----------~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 154 KA--L--------------------------ENYRQIKEFIEG----------TVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp HH--H--------------------------HHHHHHHHHHTT----------STTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HH--H--------------------------HHHHHHHHHHHh----------cCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 11 0 011222222210 001235677899999999999999887
Q ss_pred HHH
Q psy12099 161 DII 163 (174)
Q Consensus 161 ~~i 163 (174)
+.+
T Consensus 196 ~~~ 198 (410)
T 1kk1_A 196 DFI 198 (410)
T ss_dssp HHS
T ss_pred HhC
Confidence 654
No 158
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.06 E-value=6.7e-11 Score=100.05 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=47.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+|||+||+.|...|..+++.+|++|+|+|.+ +. .+..+.+.+..+. ..+.|+++++||+|+...
T Consensus 55 ~iDTPGhe~f~~~~~~~~~~aD~aILVVda~----------~g-~~~qT~e~l~~~~----~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 55 FLDTPGHAAFTSMRARGAQATDIVVLVVAAD----------DG-VMPQTIEAIQHAK----AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EECCCTTTCCTTSBCSSSBSCSSEEEEEETT----------TB-SCTTTHHHHHHHH----HTTCCEEEEEECSSSSTT
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEeecc----------cC-ccHHHHHHHHHHH----hcCceEEEEEEecccccc
Confidence 6999999999999999999999999999983 31 1112223333322 136899999999999753
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.06 E-value=5.5e-10 Score=93.07 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=46.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc---hH---HHHHHHHHHHHcCCCCCCCc-EEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN---RL---RESLDLFKSIWNNRWLRTIS-VILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~---~~---~~~~~~~~~i~~~~~~~~~~-iilv~NK 73 (174)
||||+||++|.+.+..+++.+|++|+|+|.+ +.. .+ ....+.+..+.. .++| +++++||
T Consensus 99 iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~----------~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK 164 (439)
T 3j2k_7 99 ILDAPGHKSFVPNMIGGASQADLAVLVISAR----------KGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINK 164 (439)
T ss_pred EEECCChHHHHHHHHhhHhhCCEEEEEEECC----------CCccccccCCCchHHHHHHHHHH----cCCCeEEEEeec
Confidence 6999999999999999999999999999993 321 01 122233322221 2455 9999999
Q ss_pred Cchhh
Q psy12099 74 QDLLA 78 (174)
Q Consensus 74 ~Dl~~ 78 (174)
+|+..
T Consensus 165 ~Dl~~ 169 (439)
T 3j2k_7 165 MDDPT 169 (439)
T ss_pred CCCcc
Confidence 99853
No 160
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.05 E-value=6.7e-10 Score=92.46 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=65.8
Q ss_pred CeeCCCCchhhhhH------------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099 1 MFDVGGQRDERRKW------------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI 68 (174)
Q Consensus 1 iwD~~Gq~~~r~~w------------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii 68 (174)
+|||+|+++.+... ..+++.++++++|+|. ++..+..+ ..+. ..+.. .+.|++
T Consensus 232 l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~----------~~~~~~~~-~~i~-~~l~~---~~~~~i 296 (439)
T 1mky_A 232 FVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDA----------TQGITRQD-QRMA-GLMER---RGRASV 296 (439)
T ss_dssp ESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEET----------TTCCCHHH-HHHH-HHHHH---TTCEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCCCHHH-HHHH-HHHHH---cCCCEE
Confidence 59999997655432 3467889999999999 44333332 2222 22222 368999
Q ss_pred EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc
Q psy12099 69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD 148 (174)
Q Consensus 69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d 148 (174)
+++||+|+...... . .++....+...+... ....++++||++
T Consensus 297 lv~NK~Dl~~~~~~----~--------------------------~~~~~~~~~~~~~~~--------~~~~~~~~SA~~ 338 (439)
T 1mky_A 297 VVFNKWDLVVHREK----R--------------------------YDEFTKLFREKLYFI--------DYSPLIFTSADK 338 (439)
T ss_dssp EEEECGGGSTTGGG----C--------------------------HHHHHHHHHHHCGGG--------TTSCEEECBTTT
T ss_pred EEEECccCCCchhh----H--------------------------HHHHHHHHHHHhccC--------CCCcEEEEECCC
Confidence 99999999753211 0 111111222222111 124567899999
Q ss_pred chhHHHHHHHHHHHHHH
Q psy12099 149 TENIRRVFNDCRDIIQR 165 (174)
Q Consensus 149 ~~~i~~~f~~~~~~i~~ 165 (174)
|.||.++|+.+.+.+.+
T Consensus 339 g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 339 GWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876654
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.04 E-value=2.1e-10 Score=95.95 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=46.7
Q ss_pred CeeCCC--------CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGG--------QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~G--------q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
||||+| +++++..+..++++++++|||+|. .+. +.....++..++.. .+.|++|++|
T Consensus 75 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~----------~~~--~~~~d~~l~~~l~~---~~~pvilV~N 139 (456)
T 4dcu_A 75 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNG----------REG--VTAADEEVAKILYR---TKKPVVLAVN 139 (456)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHCSEEEEEEES----------SSC--SCHHHHHHHHHHTT---CCSCEEEEEE
T ss_pred EEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeC----------CCC--CChHHHHHHHHHHH---cCCCEEEEEE
Confidence 699999 999999999999999999999998 332 22233445555544 4789999999
Q ss_pred CCchhhH
Q psy12099 73 KQDLLAE 79 (174)
Q Consensus 73 K~Dl~~~ 79 (174)
|+|+...
T Consensus 140 K~D~~~~ 146 (456)
T 4dcu_A 140 KLDNTEM 146 (456)
T ss_dssp CC-----
T ss_pred Cccchhh
Confidence 9998653
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.03 E-value=3.3e-10 Score=94.23 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=68.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh--
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA-- 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~-- 78 (174)
||||+||+.|.+.+..+++.++++|+|+|. ++.. +....+++..+.. ....|+++++||+|+..
T Consensus 108 iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa----------~~g~-~~qt~~~l~~~~~---~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 108 IADTPGHEQYTRNMATGASTCDLAIILVDA----------RYGV-QTQTRRHSYIASL---LGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EEECCCSGGGHHHHHHHHTTCSEEEEEEET----------TTCS-CHHHHHHHHHHHH---TTCCEEEEEEECTTTTTSC
T ss_pred EEECCChHHHHHHHHHHHhhCCEEEEEEEC----------CCCC-cHHHHHHHHHHHH---cCCCeEEEEEEcCcCCccc
Confidence 699999999999999999999999999999 3322 2333444433322 12236999999999975
Q ss_pred -HHHhccccchhhhhhccC-----CCCCCCCCCCCCCCChH
Q psy12099 79 -EKVKAGKSRLEDYFQEFT-----RYQTPLDATPDPGEDPI 113 (174)
Q Consensus 79 -~~~~~~~~~l~~~~~~~~-----~~~~~~~a~~~~g~~~~ 113 (174)
+........+.+++..++ .+..++||++|.|.++.
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 222101234555665555 34678999999997753
No 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.00 E-value=1e-09 Score=92.11 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=50.1
Q ss_pred CeeCCCCchhhhhHh--------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRDERRKWI--------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~--------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N 72 (174)
+|||+|++.+...+. .++++++++|+|+|. ++..+... ..++..+ .+.|+++|+|
T Consensus 276 liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~----------s~~~~~~~-~~i~~~l------~~~piivV~N 338 (462)
T 3geh_A 276 VLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDA----------ATGWTTGD-QEIYEQV------KHRPLILVMN 338 (462)
T ss_dssp ECC--------------------CCCCSCSEEEEEEET----------TTCSCHHH-HHHHHHH------TTSCEEEEEE
T ss_pred EEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEecc----------CCCCCHHH-HHHHHhc------cCCcEEEEEE
Confidence 699999977654443 368899999999999 44444333 3444443 2369999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR 116 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 116 (174)
|+|+...... ..+.++. ...+..++||++|.|.++.++.
T Consensus 339 K~Dl~~~~~~---~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~ 377 (462)
T 3geh_A 339 KIDLVEKQLI---TSLEYPE--NITQIVHTAAAQKQGIDSLETA 377 (462)
T ss_dssp CTTSSCGGGS---TTCCCCT--TCCCEEEEBTTTTBSHHHHHHH
T ss_pred CCCCCcchhh---HHHHHhc--cCCcEEEEECCCCCCHHHHHHH
Confidence 9999765422 1122211 1123456777777775444433
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.99 E-value=1.7e-09 Score=88.23 Aligned_cols=108 Identities=8% Similarity=-0.020 Sum_probs=71.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE-EEEEe-CCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV-ILFLN-KQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i-ilv~N-K~Dl~~ 78 (174)
+|||+|+++|.+....+++.++++|+|+| +. . .+....+++..+.. .++|. ++++| |+|+ .
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~---------g--~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQ---------G--LDAHTGECIIALDL----LGFKHGIIALTRSDST-H 126 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT---------C--CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-C
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CC---------C--CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-C
Confidence 69999999999888889999999999999 42 1 12333444444322 24566 88888 9999 4
Q ss_pred HHH-hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeee--ccccc---chhH
Q psy12099 79 EKV-KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHF--TCAVD---TENI 152 (174)
Q Consensus 79 ~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~--tsA~d---~~~i 152 (174)
+.. ......+++++..++ ...+.+.. +||++ ++||
T Consensus 127 ~~~~~~~~~~i~~~l~~~~---------------------------------------~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 127 MHAIDELKAKLKVITSGTV---------------------------------------LQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp HHHHHHHHHHHHHHTTTST---------------------------------------TTTCEEEECCCCTTSSSTTTTH
T ss_pred HHHHHHHHHHHHHHHHhcC---------------------------------------CCceEEEecccccccCcCCCCH
Confidence 321 100012222222111 12356778 99999 9999
Q ss_pred HHHHHHHHHHHH
Q psy12099 153 RRVFNDCRDIIQ 164 (174)
Q Consensus 153 ~~~f~~~~~~i~ 164 (174)
+++++.+.+.+-
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999887654
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.97 E-value=1.1e-09 Score=91.76 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=46.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc---hHH---HHHHHHHHHHcCCCCCCCc-EEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN---RLR---ESLDLFKSIWNNRWLRTIS-VILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~---~~~---~~~~~~~~i~~~~~~~~~~-iilv~NK 73 (174)
||||+||+.|.+.+..+++.++++|+|+|. ++.. +|+ ...+.+..+.. .++| +++++||
T Consensus 89 iiDtPGh~~f~~~~~~~~~~aD~~ilVvda----------~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK 154 (458)
T 1f60_A 89 VIDAPGHRDFIKNMITGTSQADCAILIIAG----------GVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNK 154 (458)
T ss_dssp EEECCCCTTHHHHHHHSSSCCSEEEEEEEC----------SHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEEC
T ss_pred EEECCCcHHHHHHHHhhhhhCCEEEEEEeC----------CcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEc
Confidence 699999999999999999999999999999 3321 111 23333332221 2454 9999999
Q ss_pred Cchh
Q psy12099 74 QDLL 77 (174)
Q Consensus 74 ~Dl~ 77 (174)
+|+.
T Consensus 155 ~Dl~ 158 (458)
T 1f60_A 155 MDSV 158 (458)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9997
No 166
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.97 E-value=6.7e-10 Score=88.30 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=47.8
Q ss_pred CCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 6 GQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 6 Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.|++++.+...|++++|++|+|+|+ +++. ++.....|+..+.. .++|++||+||+|+..+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~----------~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETL----------KMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECS----------TTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEEC----------CCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCc
Confidence 4899999999999999999999999 5554 66655566654432 47899999999999654
No 167
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.97 E-value=1.1e-09 Score=84.50 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=66.0
Q ss_pred CeeCCCCchhh-----------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCcEE
Q psy12099 1 MFDVGGQRDER-----------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTISVI 68 (174)
Q Consensus 1 iwD~~Gq~~~r-----------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~ii 68 (174)
||||+|+..+. +....++++++++|+|+|. +..... .....++..+.... . ..|++
T Consensus 75 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~----------~~~~~~~~~~~~~l~~~~~~~-~-~~~~i 142 (260)
T 2xtp_A 75 IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL----------GRYTSQDQQAAQRVKEIFGED-A-MGHTI 142 (260)
T ss_dssp EEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEET----------TCCCHHHHHHHHHHHHHHCGG-G-GGGEE
T ss_pred EEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeC----------CCCCHHHHHHHHHHHHHhCch-h-hccEE
Confidence 69999986542 2334578999999999999 332222 22344555543321 1 34555
Q ss_pred EEEe-CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCc--ceeeeecc
Q psy12099 69 LFLN-KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKH--YCYPHFTC 145 (174)
Q Consensus 69 lv~N-K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~--~~~~~~ts 145 (174)
+++| |+|+.... +..+..+... +++.+++.. ...+ .+....+|
T Consensus 143 ~vv~nK~Dl~~~~-------~~~~i~~~~~-----------------~~~~~~~~~----------~~~~~~~~~~~~~S 188 (260)
T 2xtp_A 143 VLFTHKEDLNGGS-------LMDYMHDSDN-----------------KALSKLVAA----------CGGRICAFNNRAEG 188 (260)
T ss_dssp EEEECGGGGTTCC-------HHHHHHHCCC-----------------HHHHHHHHH----------TTTCEEECCTTCCH
T ss_pred EEEEcccccCCcc-------HHHHHHhcch-----------------HHHHHHHHH----------hCCeEEEecCcccc
Confidence 5555 99996432 2222111110 111111110 1111 12225789
Q ss_pred cccchhHHHHHHHHHHHHHH
Q psy12099 146 AVDTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 146 A~d~~~i~~~f~~~~~~i~~ 165 (174)
|+++.|+.++|+.|.+.+..
T Consensus 189 A~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 189 SNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 99999999999999887764
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.95 E-value=8.8e-10 Score=100.55 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=47.6
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
||||+||+.|.+.+..+++.++++|+|+|.+ +.. +....+++..+.. .++| +++++||+|+..
T Consensus 363 IIDTPGHedF~~~mi~gas~AD~aILVVDAt----------dGv-~~QTrEhL~ll~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 363 HVDCPGHADYVKNMITGAAQMDGAILVVAAT----------DGP-MPQTREHILLGRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EEECCCHHHHHHHHHHTSCCCSEEEEEEETT----------TCS-CTTHHHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred EEECCChHHHHHHHHHHHhhCCEEEEEEcCC----------ccC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccc
Confidence 6999999999999999999999999999994 321 2233444443322 2567 889999999974
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.95 E-value=2.4e-09 Score=87.22 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=73.2
Q ss_pred CeeCCCC---------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099 1 MFDVGGQ---------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILF 70 (174)
Q Consensus 1 iwD~~Gq---------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv 70 (174)
+|||+|+ +.+++.+. ++..++.+++|+|+ ++.. ...+....+..++......+.|+++|
T Consensus 230 l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~----------s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV 298 (364)
T 2qtf_A 230 LVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDS----------TFSENLLIETLQSSFEILREIGVSGKPILVT 298 (364)
T ss_dssp EEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEET----------TSCHHHHHHHHHHHHHHHHHHTCCSCCEEEE
T ss_pred EEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEEC----------CCCcchHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence 5999998 44666655 67899999999999 4443 13333333444444333457899999
Q ss_pred EeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch
Q psy12099 71 LNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE 150 (174)
Q Consensus 71 ~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~ 150 (174)
+||+|+...... ...+.+..+.. . + . .....+..+||+++.
T Consensus 299 ~NK~Dl~~~~~~-----------------------------~~~~~~~~l~~-~---l-~-----~~~~~~~~~SA~~g~ 339 (364)
T 2qtf_A 299 LNKIDKINGDLY-----------------------------KKLDLVEKLSK-E---L-Y-----SPIFDVIPISALKRT 339 (364)
T ss_dssp EECGGGCCSCHH-----------------------------HHHHHHHHHHH-H---H-C-----SCEEEEEECBTTTTB
T ss_pred EECCCCCCchHH-----------------------------HHHHHHHHHHH-H---h-c-----CCCCcEEEEECCCCc
Confidence 999998642111 00111111111 0 0 0 012345789999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy12099 151 NIRRVFNDCRDIIQRMH 167 (174)
Q Consensus 151 ~i~~~f~~~~~~i~~~~ 167 (174)
|++++++.+.+.+....
T Consensus 340 gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 340 NLELLRDKIYQLATQLS 356 (364)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcccC
Confidence 99999999998776543
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.92 E-value=8.9e-09 Score=80.71 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=65.5
Q ss_pred CeeCCCCc-------------hhhhhHhhhhcCCCEEE-EEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc
Q psy12099 1 MFDVGGQR-------------DERRKWIQCFNDVTAII-FVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS 66 (174)
Q Consensus 1 iwD~~Gq~-------------~~r~~w~~y~~~~~~ii-~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ 66 (174)
+|||+|+. .++.++..|+++++++| +|+|. ++.-...+...+++.+ . ..+.|
T Consensus 129 lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~----------~~~~~~~~~~~~~~~~-~---~~~~~ 194 (299)
T 2aka_B 129 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA----------NSDLANSDALKIAKEV-D---PQGQR 194 (299)
T ss_dssp EEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEES----------SSCGGGCHHHHHHHHH-C---TTCSS
T ss_pred EEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecC----------CcchhhhHHHHHHHHh-C---CCCCe
Confidence 69999963 57788999999998877 78998 3322222333344443 2 24689
Q ss_pred EEEEEeCCchhhHHHhccccchhhhhhc--cCC-CCCCCCCCCCCCCChHHHHHHH
Q psy12099 67 VILFLNKQDLLAEKVKAGKSRLEDYFQE--FTR-YQTPLDATPDPGEDPIVIRAKY 119 (174)
Q Consensus 67 iilv~NK~Dl~~~~~~~~~~~l~~~~~~--~~~-~~~~~~a~~~~g~~~~~~~a~~ 119 (174)
+++|+||+|+..+... ....++..+.. .++ +..++||++|.|.++.++...+
T Consensus 195 ~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 195 TIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp EEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred EEEEEEccccCCCCch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 9999999999753210 00111111111 111 4678999999999877776544
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.3e-09 Score=94.31 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=45.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc------hHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN------RLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~------~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
||||+|+++|.+.+..+++.++++|+|+|.+ +.. ......+.+..+ .. ....|++|++||+
T Consensus 249 iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~----------~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKi 315 (611)
T 3izq_1 249 IVDAPGHRDFVPNAIMGISQADMAILCVDCS----------TNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKM 315 (611)
T ss_dssp EEECCSSSCHHHHHTTTSSCCSEEEEEEECS----------HHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECT
T ss_pred EEECCCCcccHHHHHHHHhhcCceEEEEECC----------CCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecc
Confidence 6999999999999999999999999999993 310 001122222222 11 2234699999999
Q ss_pred chhh
Q psy12099 75 DLLA 78 (174)
Q Consensus 75 Dl~~ 78 (174)
|+..
T Consensus 316 Dl~~ 319 (611)
T 3izq_1 316 DNVD 319 (611)
T ss_dssp TTTT
T ss_pred cccc
Confidence 9875
No 172
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=5.5e-10 Score=90.87 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=34.7
Q ss_pred CeeCCCC-------chhhhhHh-------hhhcCCC-------------EEEEEEeCCCccccccCCCCcchHHHHH-HH
Q psy12099 1 MFDVGGQ-------RDERRKWI-------QCFNDVT-------------AIIFVTACSSYNMVLREDPTQNRLRESL-DL 52 (174)
Q Consensus 1 iwD~~Gq-------~~~r~~w~-------~y~~~~~-------------~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~ 52 (174)
||||+|+ ++++.++. .|+++++ +++|+++-+ ..++.... .+
T Consensus 99 i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-----------~~~l~~~d~~~ 167 (361)
T 2qag_A 99 VVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-----------GHGLKPLDVAF 167 (361)
T ss_dssp EEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-----------SSSCCHHHHHH
T ss_pred EEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-----------CCCcchhHHHH
Confidence 6999999 89999997 8887654 355555431 23333332 33
Q ss_pred HHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 53 FKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 53 ~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+..+ . .++|+++|+||+|+...
T Consensus 168 ~~~l-~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 168 MKAI-H----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp HHHT-C----S-SCEEEEEECCSSSCH
T ss_pred HHHh-c----cCCCEEEEEECCCCCCH
Confidence 4433 2 47899999999999754
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.84 E-value=3.3e-09 Score=92.63 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=49.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
||||+|++.|+..+..+++.++++|+|+|. ++.-. .....++..+.. .++|+++++||+|+.
T Consensus 78 liDTpG~~~f~~~~~~~l~~ad~~ilVvD~----------~~g~~-~qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 78 LLDAPGYGDFVGEIRGALEAADAALVAVSA----------EAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEECCCSGGGHHHHHHHHHHCSEEEEEEET----------TTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred EEeCCCccchHHHHHHHHhhcCcEEEEEcC----------Ccccc-hhHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 699999999999999999999999999998 33322 233355555443 368999999999986
No 174
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.83 E-value=3.6e-10 Score=94.87 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=54.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc---chHH---HHHHHHHHHHcCCCCCCCc-EEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ---NRLR---ESLDLFKSIWNNRWLRTIS-VILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~---~~~~---~~~~~~~~i~~~~~~~~~~-iilv~NK 73 (174)
||||+||+.|.+.+..+++.++++|+|+|.+ +. .+|+ ...+.+.... ..++| +++++||
T Consensus 125 iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~----------~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK 190 (467)
T 1r5b_A 125 LLDAPGHKGYVTNMINGASQADIGVLVISAR----------RGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINK 190 (467)
T ss_dssp ECCCCC-----------TTSCSEEEEEEECS----------TTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEEC
T ss_pred EEECCCcHHHHHHHHhhcccCCEEEEEEeCC----------cCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEEC
Confidence 6999999999999999999999999999993 32 1111 1222222221 13566 9999999
Q ss_pred Cchhh-----HHHhccccchhhhhhcc-------CCCCCCCCCCCCCCCChH
Q psy12099 74 QDLLA-----EKVKAGKSRLEDYFQEF-------TRYQTPLDATPDPGEDPI 113 (174)
Q Consensus 74 ~Dl~~-----~~~~~~~~~l~~~~~~~-------~~~~~~~~a~~~~g~~~~ 113 (174)
+|+.. ++.......+.+++..+ ..+..++||++|.|..+.
T Consensus 191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 99953 22111123455555543 234688999999997643
No 175
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.82 E-value=7.7e-09 Score=82.03 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=58.2
Q ss_pred CeeCCCCc---------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099 1 MFDVGGQR---------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL 71 (174)
Q Consensus 1 iwD~~Gq~---------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~ 71 (174)
+|||+|+. .+...+..+++.++++++|+|.+ +... ...++...+.. .+.|++|++
T Consensus 60 ~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~----------~~~~---~~~~i~~~l~~---~~~P~ilvl 123 (301)
T 1ega_A 60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGT----------RWTP---DDEMVLNKLRE---GKAPVILAV 123 (301)
T ss_dssp EESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETT----------CCCH---HHHHHHHHHHS---SSSCEEEEE
T ss_pred EEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCC----------CCCH---HHHHHHHHHHh---cCCCEEEEE
Confidence 59999998 34445567889999999999993 3221 12233333332 368999999
Q ss_pred eCCchhh--HHHhccccchhhhhhccCC-CCCCCCCCCCCCCC
Q psy12099 72 NKQDLLA--EKVKAGKSRLEDYFQEFTR-YQTPLDATPDPGED 111 (174)
Q Consensus 72 NK~Dl~~--~~~~~~~~~l~~~~~~~~~-~~~~~~a~~~~g~~ 111 (174)
||+|+.. +.+. ..+.++...++. ...+.||++|.|.+
T Consensus 124 NK~D~~~~~~~~~---~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 124 NKVDNVQEKADLL---PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp ESTTTCCCHHHHH---HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred ECcccCccHHHHH---HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 9999975 2221 233344333433 35678888887743
No 176
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.81 E-value=5.8e-09 Score=79.58 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=45.0
Q ss_pred CeeCCC-----------CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGG-----------QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~G-----------q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
||||+| ++.+++.+..++++++++|+|+|++.++ ..-...+.++....... ...|++|
T Consensus 82 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~~~~~~~~~--~~~~~ii 150 (239)
T 3lxx_A 82 VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEKILKMFGER--ARSFMIL 150 (239)
T ss_dssp EEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHHHHHHHHHH--HGGGEEE
T ss_pred EEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHHHHHHhhhh--ccceEEE
Confidence 699999 5677788888899999999999994321 11122333333332221 2359999
Q ss_pred EEeCCchhhH
Q psy12099 70 FLNKQDLLAE 79 (174)
Q Consensus 70 v~NK~Dl~~~ 79 (174)
|+||+|+...
T Consensus 151 v~nK~D~~~~ 160 (239)
T 3lxx_A 151 IFTRKDDLGD 160 (239)
T ss_dssp EEECGGGC--
T ss_pred EEeCCccCCc
Confidence 9999998754
No 177
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.79 E-value=3.3e-09 Score=82.86 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=42.6
Q ss_pred CeeCCCC-------chhhhhH-------hhhhcC-------------CCEEEEEEeCCCccccccCCCCcchHHHHHHHH
Q psy12099 1 MFDVGGQ-------RDERRKW-------IQCFND-------------VTAIIFVTACSSYNMVLREDPTQNRLRESLDLF 53 (174)
Q Consensus 1 iwD~~Gq-------~~~r~~w-------~~y~~~-------------~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~ 53 (174)
||||+|+ ++++.++ ..|++. +|+++++++-+ ..........++
T Consensus 69 liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~----------~~~~~~~d~~~l 138 (274)
T 3t5d_A 69 IVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS----------GHGLKPLDIEFM 138 (274)
T ss_dssp EEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSC----------CSSCCHHHHHHH
T ss_pred EEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCC----------CCCCCHHHHHHH
Confidence 6999998 4566666 566654 78999999773 322222334445
Q ss_pred HHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 54 KSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 54 ~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
+.+. . ++|+++|+||+|+..
T Consensus 139 ~~l~-~----~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 139 KRLH-E----KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHT-T----TSCEEEEESSGGGSC
T ss_pred HHHh-c----cCCEEEEEeccCCCC
Confidence 5542 2 689999999999864
No 178
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.79 E-value=4.3e-08 Score=75.49 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=44.9
Q ss_pred CeeCCCC--------chhhhhHhhhh----cCCCEEEEEEeCCCccccccCCCCcch-HHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGGQ--------RDERRKWIQCF----NDVTAIIFVTACSSYNMVLREDPTQNR-LRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~Gq--------~~~r~~w~~y~----~~~~~ii~v~d~s~~~~~~~e~~~~~~-~~~~~~~~~~i~~~~~~~~~~i 67 (174)
||||+|. +.+......++ ++++++|+|+|++ .... ......++..+... ...+.|+
T Consensus 74 liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~----------~~~~~~~~~~~~l~~~~~~-~~~~~~i 142 (247)
T 3lxw_A 74 VVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG----------RFTAQDQQAVRQVRDMFGE-DVLKWMV 142 (247)
T ss_dssp EEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETT----------BCCHHHHHHHHHHHHHHCG-GGGGGEE
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCC----------CCCHHHHHHHHHHHHHhCh-hhhccEE
Confidence 6999996 44444444444 9999999999993 3222 22345555555432 2346899
Q ss_pred EEEEeCCchhh
Q psy12099 68 ILFLNKQDLLA 78 (174)
Q Consensus 68 ilv~NK~Dl~~ 78 (174)
+|++||.|+..
T Consensus 143 ilv~nK~Dl~~ 153 (247)
T 3lxw_A 143 IVFTRKEDLAG 153 (247)
T ss_dssp EEEECGGGGTT
T ss_pred EEEEchHhcCC
Confidence 99999999854
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.78 E-value=2.4e-09 Score=92.37 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=38.3
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
||||+||+.|.+.+..+++.++++|+|+|.++-. ++. .........+.+..+.. .++| +++++||+|+..
T Consensus 259 iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~-gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 259 IGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FER-GFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp CCEEESSSEEEEECCC-------CCSEEEEEECC---SST-TSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred EEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---ccc-ccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 7999999999999999999999999999993200 000 00001112222222211 1344 999999999964
No 180
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.77 E-value=1.6e-08 Score=82.47 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 6 GQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 6 Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.+++|++.+.+++++++++|+|+|++ +.. ..|...+.+. ..+.|+++|+||+|+..+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~----------d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIF----------DFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETT----------SHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECC----------CCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCc
Confidence 46889999999999999999999994 321 1222222111 237899999999999643
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.76 E-value=3.6e-08 Score=86.58 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=50.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
||||+|+..|...+..+++.++++|+|+|.+ +... ......|..... .+.|+++|+||+|+....
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~----------~gv~-~qt~~~~~~~~~----~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAV----------GGVQ-PQSETVWRQANK----YKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCC----------CCCc-HHHHHHHHHHHH----cCCCEEEEEeCCCccccc
Confidence 6999999999999999999999999999993 3322 233344444332 368999999999997643
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.76 E-value=2.4e-08 Score=87.50 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=50.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+..|+..|..+++.++++|+|+|. ++...... ...|..+.. .+.|+++|+||+|+...
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa----------~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDS----------SQGVEPQS-ETVWRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEET----------TTCSCHHH-HHHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEEC----------CCCcchhh-HHHHHHHHH----cCCCEEEEEECCCcccC
Confidence 699999999999999999999999999999 44444333 334444433 37899999999999754
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.74 E-value=5e-09 Score=89.24 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=48.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
||||+|++.|+..+..+++.++++|+|+|.+ +... .....++..+ . ..++|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~~IlVvDa~----------~g~~-~~t~~~~~~~-~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAA----------KGVE-DRTRKLMEVT-R---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETT----------TCSC-HHHHHHHHHH-T---TTTCCEEEEEECTTSCC
T ss_pred EEECCCChhHHHHHHHHHHHCCEEEEEEeCC----------ccch-HHHHHHHHHH-H---HcCCCEEEEEcCcCCcc
Confidence 6999999999999999999999999999994 3221 2223333332 2 24689999999999964
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.74 E-value=8.5e-08 Score=84.11 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=47.8
Q ss_pred CeeCCCCch---hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRD---ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~---~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
||||+|... ....+..|+++++++|||+|. ++..+..+...| ...+.. .+.|+++|+||+|+.
T Consensus 178 LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda----------~~~~s~~e~~~l-~~~l~~---~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRA----------SQPCTLGERRYL-ENYIKG---RGLTVFFLVNAWDQV 243 (695)
T ss_dssp EEECCCHHHHHTCHHHHTHHHHSSSEEEEEEET----------TSTTCHHHHHHH-HHHTTT---SCCCEEEEEECGGGG
T ss_pred EEECCCCCchhhHHHHHHHHHHhCCEEEEEEeC----------CCccchhHHHHH-HHHHHh---hCCCEEEEEECcccc
Confidence 599999765 456788999999999999999 555555544333 333332 256899999999997
Q ss_pred hH
Q psy12099 78 AE 79 (174)
Q Consensus 78 ~~ 79 (174)
..
T Consensus 244 ~~ 245 (695)
T 2j69_A 244 RE 245 (695)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 185
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.70 E-value=2.1e-08 Score=81.72 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 5 GGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 5 ~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
..|++|++.+.+++++++.+|+|+|+++++..+ ... +... ..+.|+++|+||+|+..+
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~-------l~~~-----l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPG-------LPRF-----AADNPILLVGNKADLLPR 113 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSS-------HHHH-----CTTSCEEEEEECGGGSCT
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhH-------HHHH-----hCCCCEEEEEEChhcCCC
Confidence 458999999999999999999999996554211 111 1121 236899999999999653
No 186
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.68 E-value=4.5e-08 Score=75.24 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=39.9
Q ss_pred CeeCCCCchhhhhHh------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQRDERRKWI------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
||||+|+......+. .++.+ +.+|+++|.+.. .+...+............ ..+.|+++|+||+
T Consensus 113 iiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 113 LIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-------KKPNDYCFVRFFALLIDL---RLGATTIPALNKV 181 (262)
T ss_dssp EEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-------CSHHHHHHHHHHHHHHHH---HHTSCEEEEECCG
T ss_pred EEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-------cCHHHHHHHHHHHHHHhc---ccCCCeEEEEecc
Confidence 699999987654432 24566 899999988311 122222222211111111 1257999999999
Q ss_pred chhhH
Q psy12099 75 DLLAE 79 (174)
Q Consensus 75 Dl~~~ 79 (174)
|+...
T Consensus 182 D~~~~ 186 (262)
T 1yrb_A 182 DLLSE 186 (262)
T ss_dssp GGCCH
T ss_pred ccccc
Confidence 98654
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.67 E-value=2.2e-07 Score=68.76 Aligned_cols=109 Identities=10% Similarity=0.094 Sum_probs=66.0
Q ss_pred CeeCCCCc----------hhhhhHhhhh---cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGGQR----------DERRKWIQCF---NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~Gq~----------~~r~~w~~y~---~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i 67 (174)
+|||+|+. .+++....|+ +.++++++++|+ +...+..+. . +..++. ..+.|+
T Consensus 76 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~-~-~~~~~~---~~~~~~ 140 (210)
T 1pui_A 76 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDI----------RHPLKDLDQ-Q-MIEWAV---DSNIAV 140 (210)
T ss_dssp EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCCHHHH-H-HHHHHH---HTTCCE
T ss_pred EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEEC----------CCCCchhHH-H-HHHHHH---HcCCCe
Confidence 59999984 3444444566 578999999999 343333211 1 111222 136799
Q ss_pred EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099 68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV 147 (174)
Q Consensus 68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~ 147 (174)
++++||+|+...... .. ....+..++. . ....+....|||+
T Consensus 141 ~~v~nK~D~~s~~~~--~~--------------------------~~~~~~~~~~-------~----~~~~~~~~~~Sal 181 (210)
T 1pui_A 141 LVLLTKADKLASGAR--KA--------------------------QLNMVREAVL-------A----FNGDVQVETFSSL 181 (210)
T ss_dssp EEEEECGGGSCHHHH--HH--------------------------HHHHHHHHHG-------G----GCSCEEEEECBTT
T ss_pred EEEEecccCCCchhH--HH--------------------------HHHHHHHHHH-------h----cCCCCceEEEeec
Confidence 999999998643211 00 0112222221 0 1123567789999
Q ss_pred cchhHHHHHHHHHHHH
Q psy12099 148 DTENIRRVFNDCRDII 163 (174)
Q Consensus 148 d~~~i~~~f~~~~~~i 163 (174)
++.+++++++.+.+.+
T Consensus 182 ~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 182 KKQGVDKLRQKLDTWF 197 (210)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988765
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.59 E-value=2.3e-07 Score=81.36 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|+..|...+..+++.++++|+|+|. ++...... ...|..+.. .+.|+++|+||+|+...
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa----------~~g~~~~~-~~~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDA----------QSGVEPQT-ETVWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEET----------TTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECC----------CCCCcHHH-HHHHHHHHH----cCCCEEEEEECCCcccc
Confidence 699999999999999999999999999999 44444333 344444433 36899999999999754
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.51 E-value=7e-08 Score=78.15 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=47.1
Q ss_pred CeeCCCCchh-------------hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCc
Q psy12099 1 MFDVGGQRDE-------------RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTIS 66 (174)
Q Consensus 1 iwD~~Gq~~~-------------r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 66 (174)
+|||+|+.++ +.+...|+++++++|+|+|.+ +.... .+...+...+ ...+.|
T Consensus 140 lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~----------~~~~~~~~~~~l~~~~----~~~~~~ 205 (360)
T 3t34_A 140 LIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA----------NQDLATSDAIKISREV----DPSGDR 205 (360)
T ss_dssp EEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET----------TSCGGGCHHHHHHHHS----CTTCTT
T ss_pred EEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc----------cCCcCCHHHHHHHHHh----cccCCC
Confidence 6999999887 788899999999999999873 22211 2333333333 224679
Q ss_pred EEEEEeCCchhhH
Q psy12099 67 VILFLNKQDLLAE 79 (174)
Q Consensus 67 iilv~NK~Dl~~~ 79 (174)
+++|+||+|+..+
T Consensus 206 ~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 206 TFGVLTKIDLMDK 218 (360)
T ss_dssp EEEEEECGGGCCT
T ss_pred EEEEEeCCccCCC
Confidence 9999999999754
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.50 E-value=1.2e-07 Score=74.83 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=44.3
Q ss_pred CeeCCCCch-------------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGGQRD-------------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~Gq~~-------------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i 67 (174)
+|||+|..+ ++..+..|+++++++|+|+|.+.-+ ... .+...++.. +.. .+.|+
T Consensus 135 lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~--------~~~-~~~~~i~~~-~~~---~~~~~ 201 (315)
T 1jwy_B 135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD--------LAN-SDALQLAKE-VDP---EGKRT 201 (315)
T ss_dssp EEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC--------STT-CSHHHHHHH-HCS---SCSSE
T ss_pred EEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc--------hhh-hHHHHHHHH-hCC---CCCcE
Confidence 599999864 6778889999999999999974211 000 011122333 222 36899
Q ss_pred EEEEeCCchhhH
Q psy12099 68 ILFLNKQDLLAE 79 (174)
Q Consensus 68 ilv~NK~Dl~~~ 79 (174)
++|+||+|+...
T Consensus 202 i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 202 IGVITKLDLMDK 213 (315)
T ss_dssp EEEEECTTSSCS
T ss_pred EEEEcCcccCCc
Confidence 999999998743
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.48 E-value=2.6e-07 Score=76.48 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred CeeCCCCch----hhhhHhhh---hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099 1 MFDVGGQRD----ERRKWIQC---FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~----~r~~w~~y---~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N 72 (174)
+||++|... .+.+...+ .+.++.+++++|+ + ...+.+...+..++... +.+...|.+|++|
T Consensus 209 l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDl----------s-~~~~~~ls~g~~el~~la~aL~~~P~ILVlN 277 (416)
T 1udx_A 209 LADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDA----------A-DEPLKTLETLRKEVGAYDPALLRRPSLVALN 277 (416)
T ss_dssp EEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEET----------T-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEE
T ss_pred EEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCC----------c-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEE
Confidence 589999832 22233333 4579999999999 4 44555555555554332 1234579999999
Q ss_pred CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI 152 (174)
Q Consensus 73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i 152 (174)
|+|+.... . ...+.+.+. ...+.+..+||+++++|
T Consensus 278 KlDl~~~~-~--~~~l~~~l~------------------------------------------~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 278 KVDLLEEE-A--VKALADALA------------------------------------------REGLAVLPVSALTGAGL 312 (416)
T ss_dssp CCTTSCHH-H--HHHHHHHHH------------------------------------------TTTSCEEECCTTTCTTH
T ss_pred CCChhhHH-H--HHHHHHHHH------------------------------------------hcCCeEEEEECCCccCH
Confidence 99986541 1 011111111 11245667888888888
Q ss_pred HHHHHHHHHHHHH
Q psy12099 153 RRVFNDCRDIIQR 165 (174)
Q Consensus 153 ~~~f~~~~~~i~~ 165 (174)
+++|+.+.+.+..
T Consensus 313 ~eL~~~i~~~l~~ 325 (416)
T 1udx_A 313 PALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887754
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.41 E-value=1.2e-06 Score=65.36 Aligned_cols=27 Identities=7% Similarity=-0.118 Sum_probs=23.1
Q ss_pred eeeeecccccchhHHHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i~~ 165 (174)
+.++.+||+++.|+.++|+++.+.+..
T Consensus 188 ~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 188 AKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 567789999999999999999887754
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.41 E-value=2.5e-07 Score=82.69 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=50.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
||||+|+..|...|..+++.++++|+|+|. ++..+.... ..|..+.. .+.|+++|+||+|+..
T Consensus 102 liDTPG~~df~~~~~~~l~~aD~ailVvDa----------~~g~~~qt~-~~~~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 102 LIDSPGHVDFSSEVTAALRVTDGALVVVDT----------IEGVCVQTE-TVLRQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EECCCCCCSSCHHHHHHHHTCSEEEEEEET----------TTBSCHHHH-HHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred EEECcCchhhHHHHHHHHHhCCEEEEEEeC----------CCCCCHHHH-HHHHHHHH----cCCCeEEEEECCCcch
Confidence 699999999999999999999999999999 565555543 33444332 3689999999999973
No 194
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.41 E-value=6.9e-08 Score=74.82 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=42.7
Q ss_pred CeeCCCCchhhhhHhhhhc---------CCCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCC-CCCCcEEE
Q psy12099 1 MFDVGGQRDERRKWIQCFN---------DVTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRW-LRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~---------~~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~-~~~~~iil 69 (174)
||||+|++.++.....+++ +++++|||+++ +... +.. ...|+..+..... ....|+++
T Consensus 88 liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~----------d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iv 156 (262)
T 3def_A 88 IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRL----------DVYA-VDELDKQVVIAITQTFGKEIWCKTLL 156 (262)
T ss_dssp EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEES----------SCSC-CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred EEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcC----------CCCC-CCHHHHHHHHHHHHHhchhhhcCEEE
Confidence 6999999888766555554 88999999998 3322 222 2244444332111 11249999
Q ss_pred EEeCCchh
Q psy12099 70 FLNKQDLL 77 (174)
Q Consensus 70 v~NK~Dl~ 77 (174)
++||+|+.
T Consensus 157 v~nK~Dl~ 164 (262)
T 3def_A 157 VLTHAQFS 164 (262)
T ss_dssp EEECTTCC
T ss_pred EEeCcccC
Confidence 99999985
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.36 E-value=1.3e-06 Score=70.61 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=36.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|-.. -.....+.++.+|+|+|.+ ....+.. +. ....+.|+++|+||+|+...
T Consensus 176 iiDTpGi~~---~~~~~~~~aD~vl~V~d~~----------~~~~~~~--------l~-~~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 176 LIETVGVGQ---SEVAVANMVDTFVLLTLAR----------TGDQLQG--------IK-KGVLELADIVVVNKADGEHH 232 (355)
T ss_dssp EEEECSCSS---HHHHHHTTCSEEEEEEESS----------TTCTTTT--------CC-TTSGGGCSEEEEECCCGGGH
T ss_pred EEeCCCCCc---HHHHHHHhCCEEEEEECCC----------CCccHHH--------HH-HhHhhcCCEEEEECCCCcCh
Confidence 589999433 2233458999999999983 2222111 01 11234699999999999754
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.35 E-value=3.8e-07 Score=73.66 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=59.1
Q ss_pred CeeCCCCc-------------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099 1 MFDVGGQR-------------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV 67 (174)
Q Consensus 1 iwD~~Gq~-------------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i 67 (174)
+|||+|.. .++.++..|+++++.+|+++..+ +..-.-.+...+++.+ . ..+.|+
T Consensus 134 lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a---------~~~~~~~~~~~i~~~~-~---~~~~~~ 200 (353)
T 2x2e_A 134 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA---------NSDLANSDALKVAKEV-D---PQGQRT 200 (353)
T ss_dssp EEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEET---------TSCGGGCHHHHHHHHH-C---TTCTTE
T ss_pred EEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecC---------CCccchhHHHHHHHHh-C---cCCCce
Confidence 69999963 56778889998877766655432 2111111222344443 2 246899
Q ss_pred EEEEeCCchhhHHHhccccc-hh-hhhh-ccCC-CCCCCCCCCCCCCChHHHHHHH
Q psy12099 68 ILFLNKQDLLAEKVKAGKSR-LE-DYFQ-EFTR-YQTPLDATPDPGEDPIVIRAKY 119 (174)
Q Consensus 68 ilv~NK~Dl~~~~~~~~~~~-l~-~~~~-~~~~-~~~~~~a~~~~g~~~~~~~a~~ 119 (174)
++|+||+|+..+... ... ++ ..++ ..++ ...+.||++|.|.++..+...+
T Consensus 201 i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 201 IGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred EEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 999999999753210 001 11 1111 0111 3567888888887776666543
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.35 E-value=1.4e-07 Score=74.75 Aligned_cols=26 Identities=4% Similarity=0.032 Sum_probs=12.7
Q ss_pred eeeeecccccchhHHHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i~~ 165 (174)
+.++++||+++ |++++|..+.+.+..
T Consensus 189 ~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 189 IKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp CCCCCCC----------CHHHHHHHHT
T ss_pred CeEEecCCccc-cccHHHHHHHHHhhc
Confidence 56778888888 888888888877753
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.19 E-value=1.1e-06 Score=75.03 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=48.9
Q ss_pred CeeCCCCch-----------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099 1 MFDVGGQRD-----------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~-----------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil 69 (174)
+|||+|+.. +...+..+++.++++|+|+|. ++.....+...++..+.. .+.|+++
T Consensus 158 lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa----------~~~~~~~~~~~~l~~l~~----~~~pvil 223 (550)
T 2qpt_A 158 IIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDA----------HKLEISDEFSEAIGALRG----HEDKIRV 223 (550)
T ss_dssp EEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEET----------TSCCCCHHHHHHHHHTTT----CGGGEEE
T ss_pred EEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeC----------CcCCCCHHHHHHHHHHHh----cCCCEEE
Confidence 599999975 668888899999999999999 443333445555555432 2579999
Q ss_pred EEeCCchhh
Q psy12099 70 FLNKQDLLA 78 (174)
Q Consensus 70 v~NK~Dl~~ 78 (174)
|+||+|+..
T Consensus 224 VlNK~Dl~~ 232 (550)
T 2qpt_A 224 VLNKADMVE 232 (550)
T ss_dssp EEECGGGSC
T ss_pred EEECCCccC
Confidence 999999974
No 199
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.18 E-value=4.7e-06 Score=65.41 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=66.1
Q ss_pred eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099 2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV 81 (174)
Q Consensus 2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~ 81 (174)
|-.|...+.++........+++||.|+|. .++.+... ..+..++ .+.|.++++||+|+.....
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDA----------r~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~ 67 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDA----------RIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV 67 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEET----------TSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHH
Confidence 43344446666667788999999999999 44433321 1122222 4689999999999976422
Q ss_pred hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy12099 82 KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEF 125 (174)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f 125 (174)
. ....+++.+.+....+.||++|.|..+..+...+.+..+.
T Consensus 68 ~---~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~ 108 (282)
T 1puj_A 68 T---QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKF 108 (282)
T ss_dssp H---HHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence 1 2233445443434567899999999888887777766543
No 200
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.17 E-value=5.5e-07 Score=69.92 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=41.2
Q ss_pred CeeCCCCchhhhh-------Hhhh--hcCCCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCC-CCCCcEEE
Q psy12099 1 MFDVGGQRDERRK-------WIQC--FNDVTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRW-LRTISVIL 69 (174)
Q Consensus 1 iwD~~Gq~~~r~~-------w~~y--~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~-~~~~~iil 69 (174)
||||+|++.+... +..| +++++++|||+|+ +.. ++.. ...|+..+..... ....|+++
T Consensus 91 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~----------d~~-~~~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 91 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRL----------DAY-RVDNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEES----------SCC-CCCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred EEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeC----------CCC-cCCHHHHHHHHHHHHHhCcccccCEEE
Confidence 6999999776532 2223 3579999999998 221 2222 2344444432211 11269999
Q ss_pred EEeCCchhh
Q psy12099 70 FLNKQDLLA 78 (174)
Q Consensus 70 v~NK~Dl~~ 78 (174)
++||+|+..
T Consensus 160 V~nK~Dl~~ 168 (270)
T 1h65_A 160 ALTHAQFSP 168 (270)
T ss_dssp EEECCSCCC
T ss_pred EEECcccCC
Confidence 999999854
No 201
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.88 E-value=4.8e-06 Score=68.44 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=19.1
Q ss_pred CeeCCCCch----hhhhHh---hhhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQRD----ERRKWI---QCFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq~~----~r~~w~---~y~~~~~~ii~v~d~s~ 32 (174)
+|||+|+.+ .+.++. .++++++++|+|+|+++
T Consensus 75 lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 75 MVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred EEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 699999864 333443 45789999999999964
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.88 E-value=4.7e-06 Score=68.98 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 51 DLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 51 ~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
.|+..+. .++|+++|+||+|+...
T Consensus 159 ~~lk~L~-----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 159 EFMKRLH-----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHT-----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHh-----ccCcEEEEEEcccCccH
Confidence 5565542 36899999999998653
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.85 E-value=1.6e-05 Score=63.95 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=35.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
||||+|....... ..+.+|++|+|+|.+..+. +..... .. .+.|.++|+||+|+...
T Consensus 153 liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~----------~~~l~~---~~------~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 153 IVETVGVGQSETE---VARMVDCFISLQIAGGGDD----------LQGIKK---GL------MEVADLIVINKDDGDNH 209 (341)
T ss_dssp EEEEECCTTHHHH---HHTTCSEEEEEECC----------------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred EEeCCCccchHHH---HHHhCCEEEEEEeCCccHH----------HHHHHH---hh------hcccCEEEEECCCCCCh
Confidence 5899997654432 4589999999999943321 100000 00 13588999999999753
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.80 E-value=0.00015 Score=61.94 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=49.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|.||.|+--|..--..-++-+|++|+|+|.. .- -...+...|+.... .+.|+++|.||+|+....
T Consensus 104 lIDTPGHvDF~~Ev~raL~~~DgAvlVvda~----------~G-V~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 104 LLDTPGHQDFSEDTYRVLTAVDSALVVIDAA----------KG-VEAQTRKLMDVCRM----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp EECCCCGGGCSHHHHHHHHSCSEEEEEEETT----------TB-SCHHHHHHHHHHHH----TTCCEEEEEECTTSCCCC
T ss_pred EEeCCCcHHHHHHHHHHHHhcCceEEEeecC----------CC-cccccHHHHHHHHH----hCCceEEEEecccchhcc
Confidence 4799999988887778889999999999993 22 22344455666543 378999999999987543
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.79 E-value=7.7e-05 Score=60.12 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=33.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
++||+|-. .-+....+.++.+++|+|.+ ......... ..+ -..|.++++||+|+..
T Consensus 171 liDT~Gi~---~~~~~l~~~~d~vl~V~d~~----------~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 171 LIETVGVG---QSEFAVADMVDMFVLLLPPA----------GGDELQGIK---RGI------IEMADLVAVTKSDGDL 226 (349)
T ss_dssp EEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCCSGGG
T ss_pred EEECCCcc---hhhhhHHhhCCEEEEEEcCC----------cchhHHHhH---HHH------HhcCCEEEEeeecCCC
Confidence 58999953 22455678999999999993 322111111 111 2357899999999964
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.53 E-value=0.00022 Score=57.93 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=25.6
Q ss_pred CeeCCCCchhh-------hhHhhhhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQRDER-------RKWIQCFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq~~~r-------~~w~~y~~~~~~ii~v~d~s~ 32 (174)
+|||+|+.+.. ..+..+++.++++++|+|+++
T Consensus 73 lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 73 FVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred EEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 69999997642 334557899999999999975
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.52 E-value=0.00012 Score=63.66 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=49.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
|.||.|+.-|-.-...-++-+|++|+|+|.. .-.. ..+...|+..... ++|.++|.||+|.....
T Consensus 71 lIDTPGH~DF~~Ev~raL~~~DgavlVVDa~---------~GV~--~qT~~v~~~a~~~----~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 71 IIDTPGHMDFLAEVYRSLSVLDGAILLISAK---------DGVQ--AQTRILFHALRKM----GIPTIFFINKIDQNGID 135 (638)
T ss_dssp CEECCCSSSTHHHHHHHHTTCSEEECCEESS---------CTTC--SHHHHHHHHHHHH----TCSCEECCEECCSSSCC
T ss_pred EEECCCcHHHHHHHHHHHHHhCEEEEEEeCC---------CCCc--HHHHHHHHHHHHc----CCCeEEEEeccccccCC
Confidence 5799999999888888889999999999993 1222 2334556655433 67999999999987543
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.49 E-value=9.2e-05 Score=55.17 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=23.4
Q ss_pred eeeeecccccchhHHHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i~~ 165 (174)
..++++||+++.|+.++|+.+.+.+..
T Consensus 198 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 198 AEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999887653
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.37 E-value=0.00068 Score=59.97 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=59.9
Q ss_pred CeeCCCCc-------------hhhhhHhhhh-cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc
Q psy12099 1 MFDVGGQR-------------DERRKWIQCF-NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS 66 (174)
Q Consensus 1 iwD~~Gq~-------------~~r~~w~~y~-~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ 66 (174)
++||+|-. ..+.+...|. ..++.+++|+|.+ ..-.-.+...+...+. ..+.|
T Consensus 154 LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs----------~~~~~~d~l~ll~~L~----~~g~p 219 (772)
T 3zvr_A 154 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPAN----------SDLANSDALKIAKEVD----PQGQR 219 (772)
T ss_dssp EEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETT----------SCSSSCHHHHHHHHHC----TTCSS
T ss_pred EEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCC----------CCcchhHHHHHHHHHH----hcCCC
Confidence 47898843 2344445565 4789999999993 2211122223334432 23689
Q ss_pred EEEEEeCCchhhHHHhccccchhh--hhhc-cCC-CCCCCCCCCCCCCChHHHHHHH
Q psy12099 67 VILFLNKQDLLAEKVKAGKSRLED--YFQE-FTR-YQTPLDATPDPGEDPIVIRAKY 119 (174)
Q Consensus 67 iilv~NK~Dl~~~~~~~~~~~l~~--~~~~-~~~-~~~~~~a~~~~g~~~~~~~a~~ 119 (174)
+++|+||+|+..+... ...+.. ..+- .++ ...+.||++|.|.++..+...+
T Consensus 220 vIlVlNKiDlv~~~~~--~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 220 TIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EEEEEECTTSSCTTCC--SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred EEEEEeCcccCCcchh--hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 9999999999753211 011111 1110 111 4678999999999877766543
No 210
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.24 E-value=0.00014 Score=56.32 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=33.4
Q ss_pred hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
-++.......+++.+|.|+|. .++.+.... .+. + . +.|.++++||+|+...
T Consensus 11 a~~~~~~~l~~~D~vl~VvDa----------r~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDA----------RAPFATSAY--GVD-F-----S-RKETIILLNKVDIADE 61 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEET----------TSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHHhhCCEEEEEeeC----------CCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCH
Confidence 334455678999999999999 333222110 001 1 1 6899999999999754
No 211
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.90 E-value=0.0032 Score=51.05 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=25.7
Q ss_pred CeeCCCCchhh----hh---HhhhhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQRDER----RK---WIQCFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq~~~r----~~---w~~y~~~~~~ii~v~d~s~ 32 (174)
+|||+|+.++. .+ +..++++++++++|+|+++
T Consensus 70 lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 70 FVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 69999998764 23 3456899999999999975
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.80 E-value=0.00087 Score=58.84 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=48.8
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK 80 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~ 80 (174)
+.||.|+--|..--..-++-+|++|+|+|.. .-- ...+...|+..... +.|.++|.||+|+....
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDav----------eGV-~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGT----------SGV-EPQSETVWRQANKY----GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETT----------TCS-CHHHHHHHHHHHHH----TCCEEEEEECSSSTTCC
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECC----------CCC-chhHHHHHHHHHHc----CCCeEEEEccccccCcc
Confidence 4699999988887777888999999999993 222 23344556665543 68999999999987543
No 213
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.56 E-value=0.0074 Score=48.79 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=27.2
Q ss_pred hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 18 FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
-.++|.+++|.+. ...-+......++.. .. ..+.|.+||+||+||..+
T Consensus 128 ~anvD~v~iv~a~----------~P~~~~~~i~r~L~~-a~---~~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIVSAI----------LPELSLNIIDRYLVG-CE---TLQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEEEES----------TTTCCHHHHHHHHHH-HH---HHTCEEEEEEECGGGCCH
T ss_pred HhcCCEEEEEEeC----------CCCCCHHHHHHHHHH-HH---hcCCCEEEEEECccCCCc
Confidence 3588999988766 221121211111111 11 135778999999999754
No 214
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.39 E-value=0.0011 Score=52.57 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=43.9
Q ss_pred HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHh-ccccchhhhh
Q psy12099 14 WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVK-AGKSRLEDYF 92 (174)
Q Consensus 14 w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~-~~~~~l~~~~ 92 (174)
+..-..++|.+++|+|+ ..+..-...++-+--... ..+.|.+|++||+||..+... .....+.+++
T Consensus 80 ~R~~~anvD~v~~V~~~----------~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y 146 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSA----------VQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDY 146 (307)
T ss_dssp TTTTEECCCEEEEEEES----------TTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCEEEEEEeC----------CCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHH
Confidence 33446799999999999 322211112222222222 246888999999999754210 0001333444
Q ss_pred hccCCCCCCCCCCCCCCC
Q psy12099 93 QEFTRYQTPLDATPDPGE 110 (174)
Q Consensus 93 ~~~~~~~~~~~a~~~~g~ 110 (174)
...+....+.||.+|.|.
T Consensus 147 ~~~g~~v~~~sa~~~~g~ 164 (307)
T 1t9h_A 147 RNIGYDVYLTSSKDQDSL 164 (307)
T ss_dssp HHHTCCEEECCHHHHTTC
T ss_pred HhCCCeEEEEecCCCCCH
Confidence 333334455566555553
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.17 E-value=0.011 Score=47.29 Aligned_cols=27 Identities=4% Similarity=0.021 Sum_probs=19.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~ 30 (174)
++||+|...-. ......++.+++++|.
T Consensus 152 liDT~Gi~~~~---~~v~~~~d~vl~v~d~ 178 (337)
T 2qm8_A 152 LVETVGVGQSE---TAVADLTDFFLVLMLP 178 (337)
T ss_dssp EEEECSSSSCH---HHHHTTSSEEEEEECS
T ss_pred EEECCCCCcch---hhHHhhCCEEEEEEcC
Confidence 47899975422 2235789999999998
No 216
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.39 E-value=0.015 Score=47.71 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=22.5
Q ss_pred CeeCCCCchhhh-------hHhhhhcCCCEEEEEEeCCCc
Q psy12099 1 MFDVGGQRDERR-------KWIQCFNDVTAIIFVTACSSY 33 (174)
Q Consensus 1 iwD~~Gq~~~r~-------~w~~y~~~~~~ii~v~d~s~~ 33 (174)
+|||+|+.+.++ .|..++++++++++|+|+++-
T Consensus 90 lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 90 VVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp EEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred EEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 699999988665 688899999999999999653
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.59 E-value=1.6 Score=36.69 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=34.1
Q ss_pred CeeCCCCchhh-hhHhhh-----hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE-EEEEeC
Q psy12099 1 MFDVGGQRDER-RKWIQC-----FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV-ILFLNK 73 (174)
Q Consensus 1 iwD~~Gq~~~r-~~w~~y-----~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i-ilv~NK 73 (174)
|+||+|..... .++... .-.++.+++|+|.+ ...........|.. ..|+ .+|+||
T Consensus 188 IIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~----------~g~~~~~~a~~~~~--------~~~i~gvVlNK 249 (504)
T 2j37_W 188 IVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDAS----------IGQACEAQAKAFKD--------KVDVASVIVTK 249 (504)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETT----------CCTTHHHHHHHHHH--------HHCCCCEEEEC
T ss_pred EEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecc----------ccccHHHHHHHHHh--------hcCceEEEEeC
Confidence 58999986432 222111 22789999999993 32222222222222 1465 788999
Q ss_pred Cchh
Q psy12099 74 QDLL 77 (174)
Q Consensus 74 ~Dl~ 77 (174)
.|..
T Consensus 250 ~D~~ 253 (504)
T 2j37_W 250 LDGH 253 (504)
T ss_dssp TTSC
T ss_pred Cccc
Confidence 9975
No 218
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=83.02 E-value=0.93 Score=36.68 Aligned_cols=50 Identities=4% Similarity=0.046 Sum_probs=30.4
Q ss_pred hhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
...+.++.+++|+|. +++.+-.+. ...+..+ ...+.+.|.++++||.|..
T Consensus 145 ~~i~~ad~il~vvD~----------~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AVARTCNLLFIILDV----------NKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHCSEEEEEEET----------TSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred HHHHhcCcccccccc----------CccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence 456789999999999 444222221 1222221 1224467888899999963
No 219
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=79.99 E-value=4 Score=28.90 Aligned_cols=63 Identities=6% Similarity=0.014 Sum_probs=37.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-CCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-LRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-~~~~~iilv~NK~Dl~ 77 (174)
|.|++|.-. ......+..++.+|+++.. +..+ ......++.+..... ..+.++.+|.|+.|..
T Consensus 80 iiD~~~~~~--~~~~~~l~~ad~viiv~~~-----------~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 80 IVDGAGSLS--VITSAAVMVSDLVIIPVTP-----------SPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp EEECCSSSS--HHHHHHHHHCSEEEEEECS-----------CTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred EEECCCCCC--HHHHHHHHHCCEEEEEecC-----------CHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 468877652 3344556678999999877 2333 444444444322211 3356789999999953
No 220
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=72.03 E-value=14 Score=28.13 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=37.9
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI-LFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii-lv~NK~Dl 76 (174)
|.|+++.-.... ....+..++.+|+|+.. +..++..+...++.+.......+.+++ +|.|+.+-
T Consensus 161 iiD~p~~~~~~~-~~~~l~~aD~viiv~~~-----------~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 161 IFDVLGDVVCGG-FAAPLQHADQAVVVTAN-----------DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp EEEECCSSCCGG-GGGGGGTCSEEEEEECS-----------SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred EEeCCCccchHH-HHHHHHHCCEEEEEecC-----------cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 457755432111 12345678898888866 566666666666655432222345544 89999984
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=70.78 E-value=2.4 Score=34.48 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=25.6
Q ss_pred CeeCCCC-------chhhhhHhhhhcCCCEEEEEEeCCC
Q psy12099 1 MFDVGGQ-------RDERRKWIQCFNDVTAIIFVTACSS 32 (174)
Q Consensus 1 iwD~~Gq-------~~~r~~w~~y~~~~~~ii~v~d~s~ 32 (174)
+||++|. +..+..+..++++++++++|+|+++
T Consensus 89 lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 89 VFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred EEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5899884 3355567788899999999999975
No 222
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=68.72 E-value=10 Score=27.35 Aligned_cols=62 Identities=8% Similarity=0.051 Sum_probs=39.5
Q ss_pred CeeCCCC-chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 1 MFDVGGQ-RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq-~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
|.|+++. ... .....+..++.+|+++.. +..++......++.+.... +.++.+++|+.|-..
T Consensus 72 iiD~p~~~~~~--~~~~~l~~aD~viiv~~~-----------~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 72 VIDTQARPEDE--DLEALADGCDLLVIPSTP-----------DALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp EEEEECCCSSS--HHHHHHHTSSEEEEEECS-----------SHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred EEeCCCCcCcH--HHHHHHHHCCEEEEEecC-----------CchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4577665 322 233456788999888877 5566666666555543311 456889999998643
No 223
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=65.13 E-value=19 Score=26.67 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=34.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI-LFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii-lv~NK~Dl 76 (174)
|.|+++.-........-...++.+|+|+.. +..++......++.+. . .+.+++ +|.|+.|.
T Consensus 133 iID~pp~~~~~~~~~~~~~~aD~viiv~~~-----------~~~s~~~~~~~~~~l~-~---~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 133 LIDLPPGTGDAPLTVMQDAKPTGVVVVSTP-----------QELTAVIVEKAINMAE-E---TNTSVLGLVENMSYF 194 (262)
T ss_dssp EEECCSSSSSHHHHHHHHHCCSEEEEEECS-----------SSCCHHHHHHHHHHHH-T---TTCCEEEEEETTCCE
T ss_pred EEECcCCCchHHHHHHhhccCCeEEEEecC-----------ccchHHHHHHHHHHHH-h---CCCCEEEEEECCCcc
Confidence 467776543221111112257888888866 3445555555555443 2 145665 89999874
No 224
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=64.76 E-value=15 Score=26.56 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=38.4
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.-. .........++.+|+++.. +..++......++.+.+. ....+.++.|+.+-.
T Consensus 116 iiD~~~~~~--~~~~~~~~~ad~vi~v~~~-----------~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 116 LIDCPAGLQ--LDAMSAMLSGEEALLVTNP-----------EISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRS 176 (237)
T ss_dssp EEECCSSSS--HHHHHHHTTCSEEEEEECS-----------CHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSC
T ss_pred EEECCCCcC--HHHHHHHHHCCeEEEEecC-----------CcccHHHHHHHHHHHHhC---CCceEEEEEecCCcc
Confidence 457776543 2334556788998888876 555666666655554332 224567889998853
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=64.64 E-value=17 Score=28.04 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=33.5
Q ss_pred CeeCCCCch--hh-hhHh-----hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEE
Q psy12099 1 MFDVGGQRD--ER-RKWI-----QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFL 71 (174)
Q Consensus 1 iwD~~Gq~~--~r-~~w~-----~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~ 71 (174)
|.||+|... .. .+.. .....++.+++|+|. .... +.....+.+.. ..+ ..+++
T Consensus 185 iIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda----------~~g~---~~~~~~~~~~~-----~~~i~gvVl 246 (297)
T 1j8m_F 185 IVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDA----------SIGQ---KAYDLASKFNQ-----ASKIGTIII 246 (297)
T ss_dssp EEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEG----------GGGG---GHHHHHHHHHH-----TCTTEEEEE
T ss_pred EEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeC----------CchH---HHHHHHHHHHh-----hCCCCEEEE
Confidence 479998876 21 1110 123478999999998 3222 22222233221 244 67889
Q ss_pred eCCchh
Q psy12099 72 NKQDLL 77 (174)
Q Consensus 72 NK~Dl~ 77 (174)
||.|..
T Consensus 247 nk~D~~ 252 (297)
T 1j8m_F 247 TKMDGT 252 (297)
T ss_dssp ECGGGC
T ss_pred eCCCCC
Confidence 999974
No 226
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=63.90 E-value=9.5 Score=28.01 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=41.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-----CCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-----LRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-----~~~~~iilv~NK~D 75 (174)
|.|+++.-. ......+..++.+|+++.. +..++.......+.+..... .....+.+|+|+.|
T Consensus 118 iiD~p~~~~--~~~~~~l~~ad~vi~v~~~-----------~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~ 184 (260)
T 3q9l_A 118 VCDSPAGIE--TGALMALYFADEAIITTNP-----------EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN 184 (260)
T ss_dssp EEECCSSSS--HHHHHHHHTCSEEEEEECS-----------SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEEC
T ss_pred EEcCCCCCC--HHHHHHHHhCCEEEEEecC-----------ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCC
Confidence 468876443 3445566789999999877 56666666665555432210 12357889999998
Q ss_pred hhh
Q psy12099 76 LLA 78 (174)
Q Consensus 76 l~~ 78 (174)
-..
T Consensus 185 ~~~ 187 (260)
T 3q9l_A 185 PGR 187 (260)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 227
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=63.33 E-value=18 Score=26.16 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=40.5
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.-. ......+..++.+|+++.. +..++......++.+... ......+.++.|+.+..
T Consensus 123 iiD~p~~~~--~~~~~~l~~ad~viiv~~~-----------~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 123 IVDFGASID--HVGVWVLEHLDELCIVTTP-----------SLQSLRRAGQLLKLCKEF-EKPISRIEIILNRADTN 185 (245)
T ss_dssp EEEEESSCC--TTHHHHGGGCSEEEEEECS-----------SHHHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSC
T ss_pred EEeCCCCCc--hHHHHHHHHCCEEEEEecC-----------cHHHHHHHHHHHHHHHHh-CCCccceEEEEecCCCC
Confidence 457765432 2334456778999999877 566667766666665332 22345688999999854
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=61.90 E-value=23 Score=28.90 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=33.1
Q ss_pred CeeCCCCchhhh-hHh-----hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC-c-EEEEEe
Q psy12099 1 MFDVGGQRDERR-KWI-----QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI-S-VILFLN 72 (174)
Q Consensus 1 iwD~~Gq~~~r~-~w~-----~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~-~-iilv~N 72 (174)
|.||+|...... +.. .....++.+++|+|. .... +.......+ + ... | ..+++|
T Consensus 185 IIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda----------~~g~---~~~~~~~~~-~----~~~~~i~gvVln 246 (432)
T 2v3c_C 185 IIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDG----------TIGQ---QAGIQAKAF-K----EAVGEIGSIIVT 246 (432)
T ss_dssp EEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEG----------GGGG---GHHHHHHHH-H----TTSCSCEEEEEE
T ss_pred EEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeec----------cccH---HHHHHHHHH-h----hcccCCeEEEEe
Confidence 579999765321 111 112268999999998 3322 122222222 1 123 4 788999
Q ss_pred CCchh
Q psy12099 73 KQDLL 77 (174)
Q Consensus 73 K~Dl~ 77 (174)
|.|..
T Consensus 247 K~D~~ 251 (432)
T 2v3c_C 247 KLDGS 251 (432)
T ss_dssp CSSSC
T ss_pred CCCCc
Confidence 99975
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=61.39 E-value=9.9 Score=31.22 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=25.1
Q ss_pred CeeCCCC--chhhhhH--------hhhhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQ--RDERRKW--------IQCFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq--~~~r~~w--------~~y~~~~~~ii~v~d~ 30 (174)
+||.+|+ .+.|..| ..|+.+..+.++|+|.
T Consensus 91 ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~ 130 (469)
T 1bif_A 91 FFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDA 130 (469)
T ss_dssp GGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 5899999 5567777 7888888899999999
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=61.20 E-value=1.1 Score=35.84 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=13.5
Q ss_pred CCCcEEEEEeCCchhh
Q psy12099 63 RTISVILFLNKQDLLA 78 (174)
Q Consensus 63 ~~~~iilv~NK~Dl~~ 78 (174)
.+.|+++++||.|...
T Consensus 273 ~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 273 GRRSFVCYMANELTVH 288 (369)
T ss_dssp SSEEEEEEECTTSCEE
T ss_pred CCceEEEEecCCcccc
Confidence 3579999999999864
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=59.98 E-value=15 Score=30.27 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=32.9
Q ss_pred CeeCCCCchhhh-----hHh-hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099 1 MFDVGGQRDERR-----KWI-QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ 74 (174)
Q Consensus 1 iwD~~Gq~~~r~-----~w~-~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~ 74 (174)
|.||+|-..... +.. .-...++.+++|+|. ............|... -.+..+++||.
T Consensus 187 IIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA----------~~gq~a~~~a~~f~~~-------~~i~gVIlTKl 249 (443)
T 3dm5_A 187 IVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDG----------TIGQQAYNQALAFKEA-------TPIGSIIVTKL 249 (443)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG----------GGGGGHHHHHHHHHHS-------CTTEEEEEECC
T ss_pred EEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeC----------CCchhHHHHHHHHHhh-------CCCeEEEEECC
Confidence 469998532211 100 112357899999998 3332222222333321 13556889999
Q ss_pred chhh
Q psy12099 75 DLLA 78 (174)
Q Consensus 75 Dl~~ 78 (174)
|...
T Consensus 250 D~~~ 253 (443)
T 3dm5_A 250 DGSA 253 (443)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9853
No 232
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=59.73 E-value=30 Score=25.49 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=36.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD 75 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D 75 (174)
|.|+++.-. ......+..++.+|+++.. +..++.......+.+... ..+.++.+|.|+.+
T Consensus 149 iiD~pp~~~--~~~~~~l~~aD~vivv~~~-----------~~~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 149 VIDTNPSLD--VTLKNALLCSDYVIIPMTA-----------EKWAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp EEEECSSCS--HHHHHHHTTCSEEEEEEES-----------CTTHHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred EEECcCCcc--HHHHHHHHHCCeEEEEeCC-----------ChHHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 457765432 2344556678999999877 445555554444443222 23467889999984
No 233
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=58.03 E-value=17 Score=26.20 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=36.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl 76 (174)
|.|+++.-.. .....+..++.+|+++.. +..++.......+ ++.... -..+.++.|+.+-
T Consensus 136 iiD~pp~~~~--~~~~~l~~aD~viiv~~~-----------~~~s~~~~~~~~~-~~~~~~--~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 136 VMDMGAGIEH--LTRGTAKAVDMMIAVIEP-----------NLNSIKTGLNIEK-LAGDLG--IKKVRYVINKVRN 195 (254)
T ss_dssp EEEECTTCTT--CCHHHHTTCSEEEEEECS-----------SHHHHHHHHHHHH-HHHHHT--CSCEEEEEEEECC
T ss_pred EEeCCCcccH--HHHHHHHHCCEEEEecCC-----------CHHHHHHHHHHHH-HHHHcC--CccEEEEEeCCCC
Confidence 4577654332 334456788999998877 4555555544443 333222 2467889999984
No 234
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=52.96 E-value=16 Score=26.84 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=37.2
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
|.|+++.-. .........++.+|+|+.. +..++......++.+.+. ....+.++.|+.|-.
T Consensus 115 iiD~~~~~~--~~~~~~~~~ad~vi~v~~~-----------~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 115 LLDAPAGLE--RSAVIAIAAAQELLLVVNP-----------EISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 175 (263)
T ss_dssp EEECCSSSS--HHHHHHHHHSSEEEEEECS-----------SHHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred EEeCCCCCC--hHHHHHHHHCCEEEEEeCC-----------ChhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence 467776543 2233445678888888876 455556555555544332 224567889999864
No 235
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=52.60 E-value=5.9 Score=31.36 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.7
Q ss_pred eeeeecccccchhHHHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDIIQR 165 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i~~ 165 (174)
..++++||++++||+++|.++.+.+..
T Consensus 304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 304 YPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 567899999999999999999988754
No 236
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=51.32 E-value=24 Score=25.99 Aligned_cols=63 Identities=6% Similarity=0.071 Sum_probs=36.0
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH---HHHHHHHHcCCCCCCCcE-EEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES---LDLFKSIWNNRWLRTISV-ILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~---~~~~~~i~~~~~~~~~~i-ilv~NK~Dl 76 (174)
|.|+++.-.. .....+..++.+|+++.. +..++... .+.++.+... ...+.++ -+|.|+.|-
T Consensus 116 iiD~pp~~~~--~~~~~l~~aD~viiv~~~-----------~~~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 116 LLDAPPSLSP--LTLNALAAAEGVVVPVQA-----------EYYALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDG 181 (257)
T ss_dssp EEECCSSCCH--HHHHHHHHCSEEEEEEES-----------STHHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCT
T ss_pred EEeCCCCCCH--HHHHHHHHCCeEEEEecC-----------chHHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECC
Confidence 4688765432 233445678999999987 33444433 3444443221 1235666 489999885
Q ss_pred h
Q psy12099 77 L 77 (174)
Q Consensus 77 ~ 77 (174)
.
T Consensus 182 ~ 182 (257)
T 1wcv_1 182 R 182 (257)
T ss_dssp T
T ss_pred C
Confidence 3
No 237
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=50.72 E-value=7.5 Score=30.02 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=21.8
Q ss_pred eeeeecccccchhHHHHHHHHHHHH
Q psy12099 139 CYPHFTCAVDTENIRRVFNDCRDII 163 (174)
Q Consensus 139 ~~~~~tsA~d~~~i~~~f~~~~~~i 163 (174)
..++.+||+++.||.++|+.+.+.+
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999988755
No 238
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=47.56 E-value=4.7 Score=33.00 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=24.4
Q ss_pred cceeeeecccccchhHHHHHHHHHHHHH
Q psy12099 137 HYCYPHFTCAVDTENIRRVFNDCRDIIQ 164 (174)
Q Consensus 137 ~~~~~~~tsA~d~~~i~~~f~~~~~~i~ 164 (174)
..+.++++||+++.||+++|+.+.+.+.
T Consensus 168 ~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 168 YEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp TTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3467889999999999999999998773
No 239
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=44.39 E-value=32 Score=24.65 Aligned_cols=54 Identities=6% Similarity=0.076 Sum_probs=35.4
Q ss_pred hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099 13 KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK 73 (174)
Q Consensus 13 ~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK 73 (174)
.|..-...+|++|++...-.+ +-+..+...++|+........+.+.|+.+++.=
T Consensus 60 ~l~~~i~~aD~~ii~tPeYn~-------s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S 113 (190)
T 3u7r_A 60 RLKDRIEHSDAVLAITPEYNR-------SYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTS 113 (190)
T ss_dssp HHHHHHHTSSEEEEECCCBTT-------BCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEE
T ss_pred HHHHHHHhCCcEEEechhhcc-------cCCHHHHHHHHHhcccccCCccCCCEEEEEEeC
Confidence 455667899999999865222 345566677777653333445678899888753
No 240
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=40.80 E-value=11 Score=25.88 Aligned_cols=30 Identities=7% Similarity=-0.040 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy12099 98 YQTPLDATPDPGEDPIVIRAKYFIRDEFLR 127 (174)
Q Consensus 98 ~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~ 127 (174)
+..++||++|.|.++.++...+.+..++..
T Consensus 146 ~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 146 KFMETSAKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp EEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 345689999999877777776666655443
No 241
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=40.75 E-value=51 Score=26.97 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=25.1
Q ss_pred CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099 20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL 77 (174)
Q Consensus 20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~ 77 (174)
..+.+++|+|. .......+....|...+ .+-.+++||.|..
T Consensus 211 ~pd~vlLVlDa----------~~gq~a~~~a~~f~~~~-------~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 211 KPDDVILVIDA----------SIGQKAYDLASRFHQAS-------PIGSVIITKMDGT 251 (433)
T ss_dssp CCSEEEEEEEG----------GGGGGGHHHHHHHHHHC-------SSEEEEEECGGGC
T ss_pred CCcceEEEEeC----------ccchHHHHHHHHHhccc-------CCcEEEEeccccc
Confidence 46899999999 33322223333344321 3567889999974
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=38.49 E-value=90 Score=25.37 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=18.9
Q ss_pred CeeCCCCchhh-hhH-----hhhhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDER-RKW-----IQCFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r-~~w-----~~y~~~~~~ii~v~d~ 30 (174)
|.||+|.-... .+. ......++.+++|+|.
T Consensus 188 IIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda 223 (433)
T 2xxa_A 188 LVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDA 223 (433)
T ss_dssp EEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEET
T ss_pred EEECCCcccccHHHHHHHHHHHHhhcCcceeEEeec
Confidence 47999864431 111 1224478899999998
No 243
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=38.07 E-value=32 Score=28.12 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=14.3
Q ss_pred CCCcEEEEEeCCchhhH
Q psy12099 63 RTISVILFLNKQDLLAE 79 (174)
Q Consensus 63 ~~~~iilv~NK~Dl~~~ 79 (174)
.++|+++|.||+|....
T Consensus 175 ~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 175 SKVNIIPIIAKADAISK 191 (427)
T ss_dssp SCSEEEEEESCGGGSCH
T ss_pred hCCCEEEEEcchhccch
Confidence 47899999999998743
No 244
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=37.94 E-value=39 Score=28.83 Aligned_cols=55 Identities=11% Similarity=0.272 Sum_probs=37.4
Q ss_pred hcCCCEEEEEEeCCCccccccCC--CCcchHHHHHHHHHHHHcC----CCCCCCcEEEEEeCC
Q psy12099 18 FNDVTAIIFVTACSSYNMVLRED--PTQNRLRESLDLFKSIWNN----RWLRTISVILFLNKQ 74 (174)
Q Consensus 18 ~~~~~~ii~v~d~s~~~~~~~e~--~~~~~~~~~~~~~~~i~~~----~~~~~~~iilv~NK~ 74 (174)
|.+-+++||++|+|.. +..++ ...++|+.++.....+++. .....+-++++++..
T Consensus 32 ~~~ke~ivf~IDvS~S--M~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~ 92 (609)
T 1jey_A 32 YSGRDSLIFLVDASKA--MFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEK 92 (609)
T ss_dssp --CEEEEEEEEECSGG--GGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred ccCceEEEEEEECCHH--HcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCC
Confidence 5678999999999863 22333 3567899998888887763 223456788888765
No 245
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=37.91 E-value=17 Score=24.84 Aligned_cols=27 Identities=7% Similarity=-0.144 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHH
Q psy12099 98 YQTPLDATPDPGEDPIVIRAKYFIRDE 124 (174)
Q Consensus 98 ~~~~~~a~~~~g~~~~~~~a~~~i~~~ 124 (174)
+..++||++|.|.++.++...+.+.++
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 346789999988776666665555444
No 246
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=37.47 E-value=47 Score=24.99 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=26.6
Q ss_pred CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
+.+++++.|-+. .....++ ...+..+.. ..+++++.||.|....
T Consensus 112 al~~lllldep~--------~gL~~lD--~~~l~~L~~-----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 112 VHCCLYFISPTG--------HSLRPLD--LEFMKHLSK-----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp CCEEEEEECCCS--------SSCCHHH--HHHHHHHHT-----TSEEEEEETTGGGSCH
T ss_pred eeeeeEEEecCC--------CcCCHHH--HHHHHHHHh-----cCcEEEEEeccccCCH
Confidence 578888888621 0112221 344444432 2799999999998753
No 247
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=32.99 E-value=77 Score=23.13 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=26.1
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCch
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDL 76 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl 76 (174)
..++.+|+++.. +..++.......+.+.......+.+ +.++.|+.+.
T Consensus 139 ~~aD~viiv~~~-----------~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 139 GKAQEIYIVASG-----------EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TSCCEEEEEECS-----------SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred hhCCEEEEeecC-----------chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 357888877766 4555555544444432211112344 4688899864
No 248
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=32.68 E-value=18 Score=25.57 Aligned_cols=30 Identities=10% Similarity=-0.060 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy12099 98 YQTPLDATPDPGEDPIVIRAKYFIRDEFLR 127 (174)
Q Consensus 98 ~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~ 127 (174)
...++||++|.|.++.++...+.+.+++..
T Consensus 174 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 174 PYFETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp CEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 345678889888777777766666555443
No 249
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=29.04 E-value=77 Score=26.65 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=34.7
Q ss_pred CEEEEEEeCCCccccccCCC-CcchHHHHHHHHHHHHcC----CCCCCCcEEEEEeCC
Q psy12099 22 TAIIFVTACSSYNMVLREDP-TQNRLRESLDLFKSIWNN----RWLRTISVILFLNKQ 74 (174)
Q Consensus 22 ~~ii~v~d~s~~~~~~~e~~-~~~~~~~~~~~~~~i~~~----~~~~~~~iilv~NK~ 74 (174)
.+++||+|+|.. +..++. ..++|+.++..+..+++. .....+-+++++.+.
T Consensus 8 e~iv~~iDvS~S--M~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~ 63 (565)
T 1jey_B 8 AAVVLCMDVGFT--MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDG 63 (565)
T ss_dssp EEEEEEEECCGG--GGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred eEEEEEEECChH--hcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCC
Confidence 689999999864 222222 457898888888888772 233456778887654
No 250
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.02 E-value=87 Score=23.80 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=23.8
Q ss_pred EEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHc
Q psy12099 23 AIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWN 58 (174)
Q Consensus 23 ~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~ 58 (174)
++|||+|.|.+= ...|-.++|++..+.....+++
T Consensus 5 AtViviD~S~SM--~~~D~~PsRl~a~k~Av~~li~ 38 (268)
T 4b4t_W 5 ATVLVIDNSEYS--RNGDFPRTRFEAQIDSVEFIFQ 38 (268)
T ss_dssp EEEEEECCSSTT--SSTTSSSCHHHHHHHHHHHHHH
T ss_pred eEEEEEECCHHH--hCCCCCCcHHHHHHHHHHHHHH
Confidence 689999999773 3345557888877666655554
No 251
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=25.65 E-value=98 Score=23.03 Aligned_cols=67 Identities=4% Similarity=0.035 Sum_probs=34.7
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA 78 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~ 78 (174)
|.|+++.-.... ..-+..++.+|+++.... .+...+......+..+.+. ...+.+ +-+|.|+.|...
T Consensus 159 iiD~pp~~~~~~--~~~l~~aD~viiv~~~~~--------~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 159 IIDTVPTPSVYT--NNAIVASDYVMIPLQAEE--------ESTNNIQNYISYLIDLQEQ-FNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp EEEECSSCSHHH--HHHHHHCSEEEEEECGGG--------CCHHHHHHHHHHHHHHHHH-HCTTCEEEEEEEEESCTTC
T ss_pred EEECCCCccHHH--HHHHHHCCeEEEEecCcH--------HHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEEEECCCc
Confidence 357766543321 223345888888887621 1223333344444443221 123456 458899998643
No 252
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=25.60 E-value=1.1e+02 Score=22.92 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=27.0
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCch
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI-LFLNKQDL 76 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii-lv~NK~Dl 76 (174)
..++++|+|+.. +..+........+.+.+ .+.+++ +|+|+.|.
T Consensus 213 ~~aD~vilVv~~-----------~~~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 213 KFTGNVVYVVNS-----------ENNNKDEVKKGKELIEA----TGAKLLGVVLNRMPK 256 (271)
T ss_dssp HHHCEEEEEEET-----------TSCCHHHHHHHHHHHHT----TTCEEEEEEEEEECC
T ss_pred HHCCEEEEEEeC-----------CCCcHHHHHHHHHHHHh----CCCCEEEEEEeCCcC
Confidence 467889999887 34455555444444432 134554 88999985
No 253
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.67 E-value=1e+02 Score=20.29 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=30.2
Q ss_pred hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099 9 DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA 78 (174)
Q Consensus 9 ~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~ 78 (174)
..|.+|..| ...+.+++|--- + .+|+..++....-..+.+.++.|..|--.
T Consensus 67 nireiwery-pqldvvvivttd-----------d-------kewikdfieeakergvevfvvynnkdddr 117 (162)
T 2l82_A 67 NIREIWERY-PQLDVVVIVTTD-----------D-------KEWIKDFIEEAKERGVEVFVVYNNKDDDR 117 (162)
T ss_dssp HHHHHHHHC-TTCCEEEEEECC-----------C-------HHHHHHHHHHHHHTTCEEEEEEECSCHHH
T ss_pred HHHHHHHhC-CCCcEEEEEecC-----------c-------HHHHHHHHHHHHhcCcEEEEEecCCCchh
Confidence 446788865 445666555411 2 26777766654445677777777666443
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=23.41 E-value=1.4e+02 Score=24.31 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=17.5
Q ss_pred CeeCCCCchhhh--hH----hhhhcCCCEEEEEEeC
Q psy12099 1 MFDVGGQRDERR--KW----IQCFNDVTAIIFVTAC 30 (174)
Q Consensus 1 iwD~~Gq~~~r~--~w----~~y~~~~~~ii~v~d~ 30 (174)
|.||+|.-.... +. ..-.-.++.+++|+|.
T Consensus 185 IIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa 220 (425)
T 2ffh_A 185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (425)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred EEcCCCcccccHHHHHHHHHhhhccCCceEEEEEec
Confidence 468988643211 11 0112257889999998
No 255
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=22.49 E-value=1.4e+02 Score=22.05 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=24.5
Q ss_pred cCCCEEEEEEeCCCccccccCCCCcchHHHHHHH---HHHHHcCCCCCCCc-EEEEEeCCch
Q psy12099 19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDL---FKSIWNNRWLRTIS-VILFLNKQDL 76 (174)
Q Consensus 19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~---~~~i~~~~~~~~~~-iilv~NK~Dl 76 (174)
..++.+|+++.. +..++..+... +..+... .+.+ +-++.|+.+.
T Consensus 142 ~~aD~viiv~~~-----------~~~s~~~~~~~~~~l~~~~~~---~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 142 NKAQEIYIVCSG-----------EMMAMYAANNISKGIVKYANS---GSVRLGGLICNSRNT 189 (289)
T ss_dssp TCCCEEEEEECS-----------SHHHHHHHHHHHHHHHHHHTT---SCCEEEEEEEECCCC
T ss_pred hhCCEEEEEecC-----------CHHHHHHHHHHHHHHHHHHhc---CCCceEEEEEecCCc
Confidence 457777777755 44555544433 3333222 2344 4678899864
No 256
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.38 E-value=1.4e+02 Score=22.68 Aligned_cols=60 Identities=12% Similarity=-0.028 Sum_probs=31.1
Q ss_pred CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC-cEEEEEeCCch
Q psy12099 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI-SVILFLNKQDL 76 (174)
Q Consensus 1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~-~iilv~NK~Dl 76 (174)
|.|+++.-... -......-++++|+|+... .+....+....+.++.. +. .+-+|+|+.|.
T Consensus 218 IIDtpp~~~~~-d~~~l~~~ad~vilV~~~~--------~~~~~~~~~~~~~l~~~-------~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 218 IVDTPPMLAVS-DAAVVGRSVGTSLLVARFG--------LNTAKEVSLSMQRLEQA-------GVNIKGAILNGVIK 278 (299)
T ss_dssp EEECCCTTTCT-HHHHHGGGCSEEEEEEETT--------TSCTTHHHHHHHHHHHT-------TCCCCCEEEEECCC
T ss_pred EEcCCCCchhH-HHHHHHHHCCEEEEEEcCC--------CChHHHHHHHHHHHHhC-------CCCeEEEEEeCCcc
Confidence 45776543211 0112235688999998762 13344444444444431 22 23477899985
No 257
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=21.07 E-value=60 Score=27.61 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=30.9
Q ss_pred hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099 9 DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE 79 (174)
Q Consensus 9 ~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~ 79 (174)
..+.+...|.....++++++..++- +.. -..+......+. ....+.++|.||.|+...
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~--------d~a-~~~~l~la~~v~----~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNV--------DIA-TTEALSMAQEVD----PEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSS--------CTT-TCHHHHHHHHHC----SSCCSEEEEEECGGGSSS
T ss_pred HHHHHHHHHHhcCCCCceEEEeccc--------hhc-cHHHHHHHHHHh----hcCCceEEEecchhhcCc
Confidence 3344555666655555554433211 111 123444444442 235789999999998743
Done!