RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12099
(174 letters)
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 225 bits (575), Expect = 1e-73
Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 204 bits (521), Expect = 5e-66
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
+FDVGGQR+ERRKWI F VTA+IF A S Y+ L ED +NR+ E+ +LF +
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
S +LFLNK D+ +KV + ++F+++ P + A F
Sbjct: 247 CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY---------QPVSSGKQEIEHAYEF 297
Query: 121 IRDEFLRI---STASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
++ +F + +TA + T A+D + +++ F + ++R +L + LL
Sbjct: 298 VKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 192 bits (489), Expect = 2e-61
Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E +NR+ ES LF++I
Sbjct: 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W + SVILFLNK+DLL EK+ S L DYF E+ Q A A+ F
Sbjct: 231 WFQNSSVILFLNKKDLLEEKIM--YSHLVDYFPEYDGPQRDAQA------------AREF 276
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
I F+ ++ D Y HFTCA DTENIR VF +D I +++L++Y L+
Sbjct: 277 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 184 bits (469), Expect = 4e-58
Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 16/173 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED NRL ESL++F++I NNR
Sbjct: 205 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
+S+ILFLNK DLL EKV+ ++DYF EF G+ + + F
Sbjct: 265 VFSNVSIILFLNKTDLLEEKVQ--VVSIKDYFLEFE------------GDPHCLRDVQKF 310
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
+ + F + Y HFT A++TENIR VF D +D I +L+Q L
Sbjct: 311 LVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 361
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 177 bits (451), Expect = 1e-55
Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 17/174 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + P+ A +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICY-------------PEYAGSNTYEEAAAY 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
I+ +F ++ Y HFTCA DT+N++ VF+ D+I + +L+ L
Sbjct: 302 IQCQFEDLNKR--KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 52.7 bits (127), Expect = 3e-09
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
FD+GG RR W + I+F+ C+ D RL ES + S+ +
Sbjct: 73 TFDLGGHIQARRVWKNYLPAINGIVFLVDCA--------DH--ERLLESKEELDSLMTDE 122
Query: 61 WLRTISVILFLNKQDL 76
+ + +++ NK D
Sbjct: 123 TIANVPILILGNKIDR 138
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 51.0 bits (123), Expect = 1e-08
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
FD+GG RR W F +V I+F+ + D R E+ +++N
Sbjct: 71 TFDLGGHIQARRLWKDYFPEVNGIVFLVDAA--------D--PERFDEARVELDALFNIA 120
Query: 61 WLRTISVILFLNKQDL 76
L+ + ++ NK D
Sbjct: 121 ELKDVPFVILGNKIDA 136
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 49.5 bits (119), Expect = 5e-08
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ+ R W F +I+V + + R+++ +S+
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEE 115
Query: 61 WLRTISVILFLNKQDL 76
L ++++F NKQDL
Sbjct: 116 RLAGATLLIFANKQDL 131
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 45.8 bits (108), Expect = 7e-08
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 153 RRVFNDCRDIIQRMHLRQYELL 174
+RVFND RDIIQRMHLRQYELL
Sbjct: 16 KRVFNDARDIIQRMHLRQYELL 37
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 48.8 bits (117), Expect = 8e-08
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M+D+GGQ R W + + +I V + + R+ + + + +
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE 118
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 119 DLRKAGLLIFANKQDV 134
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 48.8 bits (117), Expect = 8e-08
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQ R W + D A+IFV + ++R+ + +
Sbjct: 66 VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEE 115
Query: 61 WLRTISVILFLNKQDL 76
L+ ++++F NKQD
Sbjct: 116 ELQDAALLVFANKQDQ 131
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 48.4 bits (116), Expect = 1e-07
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M+D+GGQ R W + + +I V + + R+ + + + +
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE 113
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 114 DLRKAGLLIFANKQDV 129
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 48.0 bits (115), Expect = 2e-07
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNN 59
++D+GGQR R W F + +I+V D + R E+ +
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVI-----------DSADRKRFEETGQELTELLEE 112
Query: 60 RWLRTISVILFLNKQDL 76
L + V++F NKQDL
Sbjct: 113 EKLSCVPVLIFANKQDL 129
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 47.2 bits (113), Expect = 2e-07
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GG R W +++ A+I+V D ++R+ S ++
Sbjct: 55 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC--------D--RDRIGISKSELVAMLEEE 104
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 105 ELRKAILVVFANKQDM 120
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 47.2 bits (113), Expect = 2e-07
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV + + R+ E+ + +
Sbjct: 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAED 97
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 98 ELRDAVLLVFANKQDL 113
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 47.2 bits (113), Expect = 2e-07
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQ R W F+D A+I+V + D ++R+ + ++ +
Sbjct: 70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDST--------D--RDRMGVAKHELYALLDED 119
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 120 ELRKSLLLIFANKQDL 135
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 47.2 bits (113), Expect = 3e-07
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++D+GGQ R W + V+AI+++ + D Q ++ S + ++ +
Sbjct: 71 LWDIGGQPRFRSMWERYCRGVSAIVYMVDAA--------D--QEKIEASKNELHNLLDKP 120
Query: 61 WLRTISVILFLNKQDL 76
L+ I V++ NK+DL
Sbjct: 121 QLQGIPVLVLGNKRDL 136
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 46.9 bits (112), Expect = 4e-07
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNN 59
++DVGGQ R W F + +IFV D + R++ES D + +
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVQESADELQKMLQE 125
Query: 60 RWLRTISVILFLNKQDL 76
LR +++F NKQD+
Sbjct: 126 DELRDAVLLVFANKQDM 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 47.2 bits (112), Expect = 5e-07
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W F + +IFV V D + R+ E+ + +
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFV--------VDSND--RERVNEAREELMRMLAED 262
Query: 61 WLRTISVILFLNKQDL 76
LR +++F NKQDL
Sbjct: 263 ELRDAVLLVFANKQDL 278
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 47.2 bits (112), Expect = 6e-07
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
++DVGGQ R W + +IFV V D ++R+ E+ I N+R
Sbjct: 370 VWDVGGQDKIRPLWRHYYTGTQGLIFV--------VDCAD--RDRIDEARQELHRIINDR 419
Query: 61 WLRTISVILFLNKQDL 76
+R +++F NKQDL
Sbjct: 420 EMRDAIILIFANKQDL 435
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 44.3 bits (105), Expect = 3e-06
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN- 59
++ V GQ V I+FV D NRLR + + +++ N
Sbjct: 78 LYTVPGQVFYNASRKLILRGVDGIVFVA-----------DSAPNRLRANAESMRNMRENL 126
Query: 60 ----RWLRTISVILFLNKQDL 76
L + +++ +NK+DL
Sbjct: 127 AEYGLTLDDVPIVIQVNKRDL 147
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 43.8 bits (104), Expect = 4e-06
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
+FD+ GQ R W + + AIIFV S D + R+ + + ++ N+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS--------D--RLRMVVAKEELDTLLNHP 120
Query: 61 WL--RTISVILFLNKQDL 76
+ R I ++ F NK DL
Sbjct: 121 DIKHRRIPILFFANKMDL 138
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 41.1 bits (96), Expect = 5e-05
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 1 MFDVGGQRDERRKWIQC---FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW 57
++D GQ D F A+I+V RL ++ +
Sbjct: 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD-----DYMEALTRLHITVSKAYKV- 126
Query: 58 NNRWLRTISVILFLNKQDLLAEKVKAGKSR 87
++ +F++K D L++ K R
Sbjct: 127 ----NPDMNFEVFIHKVDGLSDDHKIETQR 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 40.5 bits (95), Expect = 7e-05
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 1 MFDVGGQRDERRKWIQCFNDVT----AIIFVTACSSYNMVLREDPTQNRLRESLDLFKSI 56
+ D G R K +IF+ + L E L SI
Sbjct: 95 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTT------TAEFLVDILSI 148
Query: 57 WNNRWLRTISVILFLNKQDLL-AEKVKAGKSRLE 89
+ I +++ NK +L A K LE
Sbjct: 149 TESSCENGIDILIACNKSELFTARPPSKIKDALE 182
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 40.1 bits (94), Expect = 1e-04
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 1 MFDVGGQRDERRKWIQCFNDVT----AIIFVTACSSYNMVLREDPTQNRLRESLDLFKSI 56
+ D G R K +IF+ + L E L SI
Sbjct: 59 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTT------TAEFLVDILSI 112
Query: 57 WNNRWLRTISVILFLNKQDLL-AEKVKAGKSRLE 89
+ I +++ NK +L A K LE
Sbjct: 113 TESSCENGIDILIACNKSELFTARPPSKIKDALE 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 45/158 (28%)
Query: 6 GQRDER-RKWIQCF-------NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW 57
GQ D+ + F ND+ A+ A +L+E+ T L ++ +L K+
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHAL----AAK----LLQENDT--TLVKTKELIKNYI 127
Query: 58 NNRWL--RTISVILFLNKQDLLAEKVKAGKSRL----------EDYFQEF-TRYQTPLDA 104
R + R L V G ++L +DYF+E YQT
Sbjct: 128 TARIMAKRPFD----KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY--- 180
Query: 105 TPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPH 142
+V F + + + D + +
Sbjct: 181 ------HVLVGDLIKFSAETLSELIRTTLDAEKV-FTQ 211
Score = 28.1 bits (62), Expect = 2.1
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 35/95 (36%)
Query: 46 LRESLDLFKSIWNN--RWLRT---ISV------------ILFL---------NKQDLLAE 79
L ++ + +WN + S+ I F N ++ E
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 80 KVKAGKSRLEDYFQEFTR------YQTP---LDAT 105
+ GK + E F+E +++ L AT
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 36.2 bits (83), Expect = 0.003
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 1 MFDVGGQRDERRKWIQC---FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW 57
+ ++ GQ + F V A+++V Q+ ++ I
Sbjct: 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDS------------QDEYINAITNLAMII 97
Query: 58 NNRWLR--TISVILFLNKQDLLAEKVKAGKSR 87
+ +I++ + ++K D L+E K R
Sbjct: 98 EYAYKVNPSINIEVLIHKVDGLSEDFKVDAQR 129
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 35.8 bits (82), Expect = 0.004
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 3 DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL 62
G + + + V I+V ++ +D + + + F S
Sbjct: 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGS------S 161
Query: 63 RTISVILFLNKQDL 76
++L Q
Sbjct: 162 GRPLLVLSCISQGD 175
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 35.0 bits (80), Expect = 0.007
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 18/89 (20%)
Query: 1 MFDVGGQRDERRK-----WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKS 55
++D GGQ F V +I V D + + +++F
Sbjct: 56 LWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVF-----------DVESTEVLKDIEIFAK 104
Query: 56 IWNNRWLRT--ISVILFLNKQDLLAEKVK 82
+ + + L+K DL+ +
Sbjct: 105 ALKQLRKYSPDAKIFVLLHKMDLVQLDKR 133
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.9 bits (78), Expect = 0.013
Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 1 MFDVGGQRDERRKWIQC-FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWN 58
+ D+ G R + + + A++FV ++ Q +++ + L++ + +
Sbjct: 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA---------FQREVKDVAEFLYQVLID 108
Query: 59 NRWLR-TISVILFLNKQDLL-AEKVKAGKSRLE 89
+ L+ + S+++ NKQD+ A+ K + +LE
Sbjct: 109 SMALKNSPSLLIACNKQDIAMAKSAKLIQQQLE 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.022
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 19/45 (42%)
Query: 73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRA 117
KQ L +K++ + L+ Y D+ P + I+A
Sbjct: 19 KQAL--KKLQ---ASLKLY--------AD-DSAP-----ALAIKA 44
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 28.5 bits (63), Expect = 0.95
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 3 DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL 62
G + + + V I+V ++ +D + + + F S
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGS------S 246
Query: 63 RTISVILFLNKQDL 76
++L Q
Sbjct: 247 GRPLLVLSCISQGD 260
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold,
nucleotide-binding domain, rossmann fold; HET: NAG BMA
MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP:
c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Length = 348
Score = 28.1 bits (62), Expect = 1.4
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 26 FVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW----LRTISVILFLNKQDL 76
F + N+ L P ++LD + RW + +I+ LFL K +
Sbjct: 230 FWSNFEIANLNLWRSPAYREYFDTLDHQGGFFYERWGDAPVHSIAAALFLPKDKI 284
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 1.7
Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 39/138 (28%)
Query: 8 RDERRKW-IQCFN----------DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSI 56
+ + FN F++A ++ ++ L E L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-- 308
Query: 57 WNNRWLRTISVILFLNKQDL--------------LAEKVKAGKSRLEDYFQ-EFTRYQTP 101
++L QDL +AE ++ G + +++ + T
Sbjct: 309 ---KYLDC-------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 102 LDATPDPGEDPIVIRAKY 119
++++ + +P R +
Sbjct: 359 IESSLN-VLEPAEYRKMF 375
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 27.2 bits (59), Expect = 3.9
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 111 DPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC 159
D + +Y + +G G Y Y F D E
Sbjct: 367 DLFLFPNQYVDVATLSVVPQLTG-GSVYKYASFQVENDQERFLSDLRRD 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.7 bits (60), Expect = 4.2
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 65 ISVILFLNKQDLLAEKVKAGKSRLEDYFQE 94
+ ++ +NK DL E LE+ +
Sbjct: 116 LETVMVINKMDLYDEDDLRKVRELEEIYSG 145
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 26.5 bits (58), Expect = 4.8
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 59 NRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTR 97
+R++ V+L NK DL+ + VK +++ + + +
Sbjct: 91 HRFVGNNKVLLVGNKADLIPKSVK--HDKVKHWMRYSAK 127
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.4 bits (58), Expect = 5.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 67 VILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQ 99
++L NK DLL VK +L + +
Sbjct: 101 ILLVGNKADLLPRSVK--YPKLLRWMRRMAEEL 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 26.1 bits (58), Expect = 6.8
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 65 ISVILFLNKQDLLAEKVKAGKSRLEDYFQEF 95
I ++ +NK D+L EK L+ ++
Sbjct: 141 IPFVVVVNKIDVLGEK----AEELKGLYESR 167
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.0 bits (58), Expect = 7.0
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 65 ISVILFLNKQDLLAEKVKAG-KSRLEDY 91
+ ++ NK DLL E+ K + + Y
Sbjct: 111 VEPVIVFNKIDLLNEEEKKELERWISIY 138
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 25.5 bits (56), Expect = 9.1
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 26/91 (28%)
Query: 46 LRESLDLFKSIWNNRWLRTISVILFLNKQDLL-AEKVKAGKSRLEDYFQEFTRYQTPLDA 104
++E ++LF SI S+++ NK D + + L + +
Sbjct: 126 IKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK--- 180
Query: 105 TPDPGEDPIVIRAKYFIRDEFLRISTASGDG 135
F ST +G G
Sbjct: 181 --------------------FSSFSTLTGVG 191
>2b1e_A Exocyst complex component EXO70; tethering complex,
endocytosis/exocytosis complex; 2.00A {Saccharomyces
cerevisiae} PDB: 2b7m_A 2pfv_A
Length = 564
Score = 25.9 bits (56), Expect = 9.7
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 44 NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLD 103
++L + L+ +S NR + + + + L+ K +++L YF P D
Sbjct: 46 HKLDDMLEDIQSGQANREENSEFHGILTHLEQLI----KRSEAQLRVYFISILNSIKPFD 101
Query: 104 ATPDPGEDP 112
+ +
Sbjct: 102 PQINITKKM 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.439
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,859,081
Number of extensions: 161091
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 55
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)