RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12099
(174 letters)
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 169 bits (428), Expect = 3e-54
Identities = 151/171 (88%), Positives = 159/171 (92%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED NRL+E+L+LFKSIWNNR
Sbjct: 51 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 110
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 111 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 170
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY 171
IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY
Sbjct: 171 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY 221
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 109 bits (273), Expect = 3e-31
Identities = 69/169 (40%), Positives = 97/169 (57%), Gaps = 16/169 (9%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED NRL ESL++F++I NNR
Sbjct: 48 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 107
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
+S+ILFLNK DLL EKV+ ++DYF EF L + F
Sbjct: 108 VFSNVSIILFLNKTDLLEEKVQ--VVSIKDYFLEFEGDPHCLRD------------VQKF 153
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
+ + F + Y HFT A++TENIR VF D +D I +L+
Sbjct: 154 LVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 200
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 103 bits (257), Expect = 9e-29
Identities = 76/169 (44%), Positives = 98/169 (57%), Gaps = 17/169 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E +NR+ ES LF++I
Sbjct: 49 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 108
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W + SVILFLNK+DLL EK+ S L DYF E+ Q A A+ F
Sbjct: 109 WFQNSSVILFLNKKDLLEEKIM--YSHLVDYFPEYDGPQRDAQA------------AREF 154
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
I F+ ++ D Y HFTCA DTENIR VF +D I +++L+
Sbjct: 155 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 200
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 89.6 bits (221), Expect = 2e-23
Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 17/165 (10%)
Query: 1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
MFDVGGQR ER+KWI CF VTAIIF A S Y++VL ED NR+ ES+ LF SI NN+
Sbjct: 46 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 105
Query: 61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
W S+ILFLNK+DL EK+K KS L + E+ T +A +
Sbjct: 106 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEA-------------AAY 150
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQR 165
I+ +F ++ Y HFTCA DT+N++ VF+ D+I +
Sbjct: 151 IQCQFEDLNKR--KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 25.4 bits (56), Expect = 0.76
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 126 LRIST-ASGDGKHYCYPHF 143
L + T AS G+ YC PHF
Sbjct: 9 LSLGTYASLHGRIYCKPHF 27
>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 551
Score = 26.8 bits (59), Expect = 1.4
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 44 NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLD 103
++L + L+ +S NR + + + + L+ K +++L YF P D
Sbjct: 33 HKLDDMLEDIQSGQANREENSEFHGILTHLEQLI----KRSEAQLRVYFISILNSIKPFD 88
>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 167
Score = 26.4 bits (58), Expect = 1.5
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAK--YFIRD 123
F N + K + +LED + T++ + +DA +V R Y I+D
Sbjct: 115 FFNVKADNLHKNADARKKLEDSAELLTKFNSYVDA--------VVERRNGFYLIKD 162
>d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic,
N-terminal domain {Archaeon Methanopyrus kandleri
[TaxId: 2320]}
Length = 143
Score = 24.9 bits (54), Expect = 3.7
Identities = 6/41 (14%), Positives = 19/41 (46%)
Query: 14 WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFK 54
W++ ++ +F A +M++ E +++++ D
Sbjct: 74 WVKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAA 114
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit
H, transmembrane region {Rhodopseudomonas viridis
[TaxId: 1079]}
Length = 36
Score = 23.1 bits (49), Expect = 4.0
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 46 LRESLDLFKSIWNNRWLRTISVI-LFLNKQD 75
L + LD+ + +W +WL +V+ L+L ++D
Sbjct: 6 LAQHLDIAQLVWYAQWLVIWTVVLLYLRRED 36
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus
anthracis [TaxId: 1392]}
Length = 124
Score = 24.6 bits (53), Expect = 4.8
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 136 KHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 166
++ Y CA T + V ++ +
Sbjct: 44 ENASYGLCNCAERTALFKAVSEGDKEFVAIA 74
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16,
HRV-16 [TaxId: 31708]}
Length = 460
Score = 24.6 bits (53), Expect = 9.7
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 56 IWNNRWLRTISVILFLNKQDLLAEKVKAGKSRL 88
+ +++ + +I FL + +K+ AGK+R+
Sbjct: 143 LALDKYGVDLPMITFLKDELRKKDKIAAGKTRV 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.439
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,101
Number of extensions: 32785
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 23
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.3 bits)