BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12100
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V+P ELE+I++Q PD +GE+P A VV + G +T
Sbjct: 440 VDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 499
Query: 79 EQEISSYV 86
E+EI YV
Sbjct: 500 EKEIVDYV 507
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44
A V KKL GGV F++ +P+ GK+ ++ I+++
Sbjct: 508 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 546
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V+P ELE+I++Q PD +GE+P A VV + G +T
Sbjct: 435 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 494
Query: 79 EQEISSYV 86
E+EI YV
Sbjct: 495 EKEIVDYV 502
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44
A V KKL GGV F++ +P+ GK+ ++ I+++
Sbjct: 503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V+P ELE+I++Q PD +GE+P A VV + G +T
Sbjct: 440 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 499
Query: 79 EQEISSYV 86
E+EI YV
Sbjct: 500 EKEIVDYV 507
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44
A V KKL GGV F++ +P+ GK+ ++ I+++
Sbjct: 508 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 546
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V+P ELE+I++Q PD +GE+P A VV + G +T
Sbjct: 435 VDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 494
Query: 79 EQEISSYV 86
E+EI YV
Sbjct: 495 EKEIVDYV 502
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44
A V KKL GGV F++ +P+ GK+ ++ I+++
Sbjct: 503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V P ELE+I++Q PD +GE+P A VV + G +T
Sbjct: 470 VDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMT 529
Query: 79 EQEISSYV 86
EQE+ YV
Sbjct: 530 EQEVMDYV 537
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIM 43
A V K+L GGVKF++ +P+ GK+ ++ I+M
Sbjct: 538 AGQVTASKRLRGGVKFVDEVPKGLTGKIDARKIREILM 575
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V P ELE++++Q PD ++GE+P A VV + G +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496
Query: 79 EQEISSYV 86
E+E+ YV
Sbjct: 497 EKEVMDYV 504
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENII 42
A V+ K+L GGV+F++ +P+ GK+ + I+
Sbjct: 505 ASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V P ELE++++Q PD ++GE+P A VV + G +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496
Query: 79 EQEISSYV 86
E+E+ YV
Sbjct: 497 EKEVMDYV 504
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENII 42
A V+ K+L GGV+F++ +P+ GK+ + I+
Sbjct: 505 ASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELT 78
V L+++ + +V P ELE++++Q PD ++GE+P A VV + G +T
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496
Query: 79 EQEISSYV 86
E+E+ YV
Sbjct: 497 EKEVMDYV 504
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENII 42
A V+ K+L GGV+F++ +P+ GK+ + I+
Sbjct: 505 ASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
+V+P ELE +++ D +GEVP AFVVK + TE EI Y+
Sbjct: 443 QVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYI 497
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
+V+P ELE +++ + +GEVP AFVVK EL+E ++ +V
Sbjct: 490 QVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFV 544
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 33 VSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGV--ELTEQEISSYVEPK 89
++P ELE ++ + PD +GEVPKAF+V KP ++ E++I +V +
Sbjct: 449 IAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER 507
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 28 NPAG-KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVV 70
N +G ++ P+E+EN +M+ PD + GEV KAFVV
Sbjct: 460 NSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 28 NPAG-KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVV 70
N +G ++ P+E+EN +M+ PD + GEV KAFVV
Sbjct: 460 NSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 32 KVSPTELENIIMQIXXXXXXXXXXXPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
V P E+E++I+ + PD GE+ A VV E++EQ+I Y +
Sbjct: 422 NVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYCGTR 478
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 19 VKFLETIPRNPAGKVSPTELE 39
V F E IPRNP GK+ T L
Sbjct: 488 VIFAEAIPRNPTGKILKTVLR 508
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.131 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,451,673
Number of Sequences: 62578
Number of extensions: 66812
Number of successful extensions: 118
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 31
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)