Query psy12100
Match_columns 93
No_of_seqs 197 out of 1209
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 18:47:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176|consensus 99.9 8.5E-26 1.8E-30 158.8 8.8 89 1-92 412-500 (537)
2 COG0365 Acs Acyl-coenzyme A sy 99.9 3.7E-21 7.9E-26 135.2 9.7 88 1-91 400-489 (528)
3 COG0318 CaiC Acyl-CoA syntheta 99.9 5.1E-21 1.1E-25 134.7 9.7 89 1-92 405-495 (534)
4 TIGR01217 ac_ac_CoA_syn acetoa 99.8 2.1E-20 4.5E-25 134.1 10.8 90 1-93 503-595 (652)
5 KOG1175|consensus 99.8 1.3E-20 2.8E-25 133.9 8.9 90 1-93 479-571 (626)
6 PLN03051 acyl-activating enzym 99.8 2.8E-20 6.2E-25 129.6 9.1 85 1-88 361-451 (499)
7 PLN02654 acetate-CoA ligase 99.8 7.4E-20 1.6E-24 131.5 11.1 90 1-93 517-609 (666)
8 PRK03584 acetoacetyl-CoA synth 99.8 1.5E-19 3.2E-24 129.4 11.1 90 1-93 502-594 (655)
9 KOG1177|consensus 99.8 9.4E-20 2E-24 125.7 9.3 90 1-93 465-556 (596)
10 TIGR02316 propion_prpE propion 99.8 1.4E-19 3.1E-24 129.0 10.1 90 1-93 476-573 (628)
11 PRK07445 O-succinylbenzoic aci 99.8 2.8E-19 6.1E-24 123.7 10.5 89 1-93 328-416 (452)
12 PTZ00237 acetyl-CoA synthetase 99.8 5.3E-19 1.1E-23 126.8 10.9 90 1-93 496-592 (647)
13 PRK00174 acetyl-CoA synthetase 99.8 7.2E-19 1.6E-23 125.5 11.3 90 1-93 487-579 (637)
14 TIGR02188 Ac_CoA_lig_AcsA acet 99.8 6.6E-19 1.4E-23 125.4 11.0 90 1-93 479-571 (625)
15 PRK07788 acyl-CoA synthetase; 99.8 4.7E-19 1E-23 124.3 9.7 90 1-93 431-520 (549)
16 PRK07529 AMP-binding domain pr 99.8 6.1E-19 1.3E-23 126.0 10.3 88 1-91 449-536 (632)
17 PRK07868 acyl-CoA synthetase; 99.8 1.1E-18 2.5E-23 130.0 10.5 88 1-93 840-927 (994)
18 PLN02574 4-coumarate--CoA liga 99.8 2.6E-18 5.7E-23 121.0 9.7 90 1-93 434-523 (560)
19 PRK10524 prpE propionyl-CoA sy 99.8 4E-18 8.6E-23 121.5 10.5 90 1-93 477-574 (629)
20 PRK07867 acyl-CoA synthetase; 99.8 4.3E-18 9.3E-23 119.5 10.4 89 1-92 385-475 (529)
21 PRK07824 O-succinylbenzoic aci 99.8 6.6E-18 1.4E-22 113.3 10.4 89 1-93 238-326 (358)
22 PRK13382 acyl-CoA synthetase; 99.8 4.5E-18 9.7E-23 119.4 9.7 90 1-93 420-509 (537)
23 PLN03102 acyl-activating enzym 99.8 5.7E-18 1.2E-22 119.9 10.1 90 1-93 424-523 (579)
24 PLN02860 o-succinylbenzoate-Co 99.8 7.6E-18 1.6E-22 118.8 10.5 90 1-93 418-522 (563)
25 PLN03052 acetate--CoA ligase; 99.8 6.9E-18 1.5E-22 122.6 9.5 88 1-91 593-688 (728)
26 PRK09274 peptide synthase; Pro 99.8 5.1E-18 1.1E-22 119.1 8.5 86 1-90 424-509 (552)
27 PRK06155 crotonobetaine/carnit 99.7 1.6E-17 3.5E-22 116.8 10.6 90 1-93 404-493 (542)
28 PRK09029 O-succinylbenzoic aci 99.7 9.1E-18 2E-22 115.6 9.2 87 1-93 336-422 (458)
29 PRK06839 acyl-CoA synthetase; 99.7 1.5E-17 3.2E-22 115.0 10.1 90 1-93 375-464 (496)
30 PRK08279 long-chain-acyl-CoA s 99.7 1.1E-17 2.4E-22 118.6 9.7 90 1-93 443-533 (600)
31 PRK09188 serine/threonine prot 99.7 1.7E-17 3.6E-22 112.8 10.1 81 1-92 213-297 (365)
32 PRK05852 acyl-CoA synthetase; 99.7 1.2E-17 2.6E-22 116.9 9.6 90 1-93 412-501 (534)
33 PRK08008 caiC putative crotono 99.7 1.7E-17 3.6E-22 115.5 10.0 90 1-93 402-491 (517)
34 PRK13388 acyl-CoA synthetase; 99.7 2.7E-17 5.9E-22 115.6 10.4 89 1-92 384-474 (540)
35 PRK07008 long-chain-fatty-acid 99.7 1.9E-17 4.2E-22 116.2 9.6 90 1-93 413-502 (539)
36 PRK05677 long-chain-fatty-acid 99.7 2.4E-17 5.2E-22 116.1 10.0 90 1-93 437-526 (562)
37 PLN02246 4-coumarate--CoA liga 99.7 2.8E-17 6E-22 115.1 10.0 90 1-93 416-505 (537)
38 PRK13390 acyl-CoA synthetase; 99.7 2.7E-17 5.8E-22 114.2 9.7 90 1-93 383-475 (501)
39 PRK08308 acyl-CoA synthetase; 99.7 3.7E-17 8E-22 111.6 10.1 88 1-93 295-382 (414)
40 PRK06060 acyl-CoA synthetase; 99.7 3.5E-17 7.5E-22 118.1 10.4 90 1-93 369-461 (705)
41 TIGR03098 ligase_PEP_1 acyl-Co 99.7 3.5E-17 7.6E-22 113.5 10.0 89 2-93 399-487 (515)
42 PRK13383 acyl-CoA synthetase; 99.7 4.5E-17 9.8E-22 113.6 10.1 90 1-93 400-489 (516)
43 PRK09088 acyl-CoA synthetase; 99.7 5.1E-17 1.1E-21 112.4 10.1 90 1-93 365-454 (488)
44 PRK07769 long-chain-fatty-acid 99.7 1.7E-17 3.7E-22 118.3 7.9 87 1-91 468-577 (631)
45 PRK05605 long-chain-fatty-acid 99.7 6.4E-17 1.4E-21 114.1 10.5 90 1-93 449-538 (573)
46 PRK04319 acetyl-CoA synthetase 99.7 4.3E-17 9.4E-22 115.0 9.6 90 1-93 436-528 (570)
47 PRK07798 acyl-CoA synthetase; 99.7 5.8E-17 1.2E-21 112.6 10.1 90 1-93 412-501 (533)
48 PRK08162 acyl-CoA synthetase; 99.7 7.4E-17 1.6E-21 113.0 10.5 90 1-93 420-509 (545)
49 PRK06145 acyl-CoA synthetase; 99.7 6.1E-17 1.3E-21 112.1 9.9 90 1-93 377-466 (497)
50 PRK08314 long-chain-fatty-acid 99.7 5.3E-17 1.2E-21 113.6 9.6 90 1-93 420-511 (546)
51 TIGR02275 DHB_AMP_lig 2,3-dihy 99.7 8.1E-17 1.8E-21 112.6 10.2 88 1-92 412-500 (527)
52 PLN02330 4-coumarate--CoA liga 99.7 5.6E-17 1.2E-21 113.9 8.8 90 1-93 421-510 (546)
53 PRK07470 acyl-CoA synthetase; 99.7 9.9E-17 2.1E-21 112.0 9.9 90 1-93 398-487 (528)
54 PRK06178 acyl-CoA synthetase; 99.7 8.5E-17 1.9E-21 113.3 9.6 90 1-93 446-535 (567)
55 PRK06710 long-chain-fatty-acid 99.7 1.3E-16 2.7E-21 112.4 10.1 90 1-93 435-524 (563)
56 PRK12583 acyl-CoA synthetase; 99.7 1.7E-16 3.7E-21 111.2 10.7 90 1-93 432-521 (558)
57 PRK13295 cyclohexanecarboxylat 99.7 2.2E-16 4.8E-21 110.9 10.9 89 1-92 423-512 (547)
58 PRK06164 acyl-CoA synthetase; 99.7 2E-16 4.3E-21 110.7 10.4 89 1-93 410-498 (540)
59 TIGR02372 4_coum_CoA_lig 4-cou 99.7 1.8E-16 3.8E-21 108.5 9.8 85 1-93 279-365 (386)
60 PRK06018 putative acyl-CoA syn 99.7 2.5E-16 5.4E-21 110.5 10.4 89 1-92 414-502 (542)
61 TIGR03208 cyc_hxne_CoA_lg cycl 99.7 2.3E-16 5E-21 110.5 10.1 89 1-92 421-510 (538)
62 PRK12406 long-chain-fatty-acid 99.7 3E-16 6.5E-21 109.2 10.2 90 1-93 383-472 (509)
63 PRK08043 bifunctional acyl-[ac 99.7 2E-16 4.4E-21 114.5 9.7 87 1-93 595-682 (718)
64 PRK08316 acyl-CoA synthetase; 99.7 2.9E-16 6.4E-21 109.0 9.9 90 1-93 399-488 (523)
65 PRK07656 long-chain-fatty-acid 99.7 4.1E-16 9E-21 108.1 10.4 90 1-93 396-485 (513)
66 PRK05620 long-chain-fatty-acid 99.7 2.3E-16 5.1E-21 111.4 9.3 90 1-93 434-526 (576)
67 PRK07638 acyl-CoA synthetase; 99.7 2E-16 4.2E-21 109.6 8.6 86 1-93 365-450 (487)
68 PRK05851 long-chain-fatty-acid 99.7 1.1E-16 2.3E-21 112.2 7.3 68 1-72 400-467 (525)
69 PRK08315 AMP-binding domain pr 99.7 4.9E-16 1.1E-20 109.0 10.4 90 1-93 431-520 (559)
70 TIGR03205 pimA dicarboxylate-- 99.7 5.8E-16 1.3E-20 108.6 10.3 90 1-93 425-515 (541)
71 TIGR03443 alpha_am_amid L-amin 99.7 4.3E-16 9.3E-21 118.7 10.1 90 1-93 682-797 (1389)
72 PLN02479 acetate-CoA ligase 99.7 3.2E-16 7E-21 110.6 8.8 90 1-93 434-528 (567)
73 PRK07787 acyl-CoA synthetase; 99.7 5.4E-16 1.2E-20 107.2 9.7 89 1-93 354-442 (471)
74 PRK07514 malonyl-CoA synthase; 99.7 6.4E-16 1.4E-20 107.1 10.0 89 1-92 381-469 (504)
75 PLN02861 long-chain-fatty-acid 99.7 3.2E-16 7E-21 112.7 8.7 66 1-72 497-563 (660)
76 PRK10946 entE enterobactin syn 99.7 6.1E-16 1.3E-20 108.5 9.7 87 1-92 413-500 (536)
77 PLN02736 long-chain acyl-CoA s 99.7 2.8E-16 6.1E-21 112.7 7.9 67 1-73 491-558 (651)
78 PRK12492 long-chain-fatty-acid 99.7 9.1E-16 2E-20 108.2 10.2 89 1-93 445-533 (562)
79 PRK06188 acyl-CoA synthetase; 99.7 8.9E-16 1.9E-20 107.1 10.0 89 1-92 397-485 (524)
80 PRK12476 putative fatty-acid-- 99.7 4.2E-16 9.1E-21 111.0 7.9 86 1-91 480-569 (612)
81 PRK05857 acyl-CoA synthetase; 99.7 9E-16 1.9E-20 107.9 9.4 71 1-74 406-476 (540)
82 PRK08751 putative long-chain f 99.7 8.3E-16 1.8E-20 108.1 9.2 88 1-92 441-528 (560)
83 PRK13391 acyl-CoA synthetase; 99.6 1.7E-15 3.7E-20 105.6 9.9 90 1-93 386-478 (511)
84 PRK08276 long-chain-fatty-acid 99.6 1.7E-15 3.7E-20 105.2 9.8 89 1-92 373-464 (502)
85 PRK07786 long-chain-fatty-acid 99.6 3.1E-15 6.7E-20 105.0 10.4 90 1-93 403-493 (542)
86 PRK06187 long-chain-fatty-acid 99.6 3.1E-15 6.7E-20 103.7 10.3 89 1-92 399-487 (521)
87 PRK12316 peptide synthase; Pro 99.6 1.7E-15 3.6E-20 124.9 9.9 89 1-93 2385-2473(5163)
88 TIGR01734 D-ala-DACP-lig D-ala 99.6 3.2E-15 6.8E-20 103.6 9.9 88 1-92 378-470 (502)
89 PRK06334 long chain fatty acid 99.6 2.1E-15 4.7E-20 106.2 9.1 82 1-91 414-502 (539)
90 PRK07059 Long-chain-fatty-acid 99.6 3.4E-15 7.3E-20 105.1 9.9 88 1-92 439-526 (557)
91 COG1021 EntE Peptide arylation 99.6 5.1E-16 1.1E-20 105.8 5.1 84 1-88 418-501 (542)
92 PRK03640 O-succinylbenzoic aci 99.6 3.9E-15 8.5E-20 102.8 9.4 88 1-93 364-451 (483)
93 PRK10252 entF enterobactin syn 99.6 4.3E-15 9.4E-20 112.4 10.0 90 1-93 841-936 (1296)
94 PLN02614 long-chain acyl-CoA s 99.6 3E-15 6.6E-20 107.9 8.7 67 1-73 500-567 (666)
95 PRK12467 peptide synthase; Pro 99.6 3.2E-15 7E-20 121.8 9.5 89 1-93 3475-3563(3956)
96 TIGR01923 menE O-succinylbenzo 99.6 4.9E-15 1.1E-19 101.0 9.1 87 1-92 324-410 (436)
97 PRK12316 peptide synthase; Pro 99.6 3.2E-15 6.9E-20 123.3 9.5 86 1-93 890-975 (5163)
98 PRK09192 acyl-CoA synthetase; 99.6 2.9E-15 6.2E-20 106.1 8.1 85 1-90 443-529 (579)
99 PRK08974 long-chain-fatty-acid 99.6 8.7E-15 1.9E-19 103.0 10.4 88 1-92 436-523 (560)
100 PRK06814 acylglycerophosphoeth 99.6 5E-15 1.1E-19 111.2 9.6 86 1-92 1014-1100(1140)
101 PRK06087 short chain acyl-CoA 99.6 1.4E-14 3E-19 101.7 9.8 89 1-92 414-504 (547)
102 TIGR02262 benz_CoA_lig benzoat 99.6 2.2E-14 4.7E-19 99.9 9.9 89 1-92 388-479 (508)
103 PRK04813 D-alanine--poly(phosp 99.6 2.4E-14 5.1E-19 99.1 9.9 88 1-92 380-471 (503)
104 PRK08633 2-acyl-glycerophospho 99.6 2E-14 4.3E-19 107.6 9.3 86 1-92 1023-1111(1146)
105 PRK05850 acyl-CoA synthetase; 99.5 1.8E-14 3.9E-19 101.8 7.6 69 1-75 441-509 (578)
106 PLN02387 long-chain-fatty-acid 99.5 4.3E-14 9.3E-19 102.5 8.9 67 1-73 539-606 (696)
107 PRK05691 peptide synthase; Val 99.5 6.5E-14 1.4E-18 114.9 10.5 89 1-93 1509-1597(4334)
108 PRK12467 peptide synthase; Pro 99.5 5.8E-14 1.3E-18 114.7 10.0 89 1-93 1958-2054(3956)
109 PLN02430 long-chain-fatty-acid 99.5 6.9E-14 1.5E-18 100.9 9.0 67 1-73 497-564 (660)
110 PTZ00342 acyl-CoA synthetase; 99.5 6.4E-14 1.4E-18 102.4 8.8 67 1-73 574-641 (746)
111 PRK05691 peptide synthase; Val 99.5 1.1E-13 2.3E-18 113.6 9.8 89 1-93 2572-2666(4334)
112 PRK07768 long-chain-fatty-acid 99.4 7.2E-13 1.6E-17 93.0 8.3 69 1-72 418-488 (545)
113 PRK08180 feruloyl-CoA synthase 99.4 1.5E-13 3.3E-18 98.1 3.2 84 1-91 444-549 (614)
114 PTZ00216 acyl-CoA synthetase; 99.4 2E-12 4.2E-17 93.9 8.0 66 1-72 540-608 (700)
115 TIGR02155 PA_CoA_ligase phenyl 99.3 1.5E-11 3.3E-16 84.5 8.6 88 1-91 293-395 (422)
116 KOG1179|consensus 99.3 3.2E-11 6.9E-16 85.2 8.3 90 1-93 492-582 (649)
117 COG1022 FAA1 Long-chain acyl-C 99.3 1.4E-11 3E-16 88.5 6.4 66 1-73 453-519 (613)
118 TIGR01733 AA-adenyl-dom amino 99.2 1.9E-11 4.2E-16 82.7 3.9 50 1-53 359-408 (408)
119 PRK12582 acyl-CoA synthetase; 99.2 4.3E-11 9.3E-16 85.8 5.1 57 1-60 456-519 (624)
120 PF13193 AMP-binding_C: AMP-bi 99.1 1.3E-10 2.7E-15 62.5 4.8 51 37-93 1-51 (73)
121 PTZ00297 pantothenate kinase; 98.9 1.1E-08 2.5E-13 79.3 8.2 59 7-72 846-905 (1452)
122 KOG1256|consensus 98.9 8E-09 1.7E-13 74.8 6.4 68 1-74 531-599 (691)
123 KOG1178|consensus 98.7 8E-08 1.7E-12 72.5 7.6 89 2-93 459-548 (1032)
124 PF14535 AMP-binding_C_2: AMP- 98.5 5.9E-07 1.3E-11 50.7 5.5 47 30-76 1-47 (96)
125 TIGR03335 F390_ftsA coenzyme F 98.5 1E-06 2.3E-11 61.5 7.8 61 13-74 321-385 (445)
126 KOG1180|consensus 98.4 5.4E-07 1.2E-11 64.3 5.3 68 1-74 519-587 (678)
127 COG1541 PaaK Coenzyme F390 syn 98.2 8.2E-06 1.8E-10 57.0 7.4 55 20-74 331-385 (438)
128 COG1020 EntF Non-ribosomal pep 97.3 0.00032 7E-09 50.6 4.1 43 1-46 600-642 (642)
129 KOG3628|consensus 95.0 0.062 1.3E-06 42.0 5.1 42 12-56 1244-1286(1363)
130 PF03321 GH3: GH3 auxin-respon 92.8 0.44 9.6E-06 34.6 5.8 75 12-90 388-467 (528)
131 TIGR02304 aden_form_hyp probab 90.8 0.71 1.5E-05 32.8 5.0 36 19-54 323-364 (430)
132 PF01037 AsnC_trans_reg: AsnC 81.9 5.3 0.00011 20.4 5.3 46 33-88 10-55 (74)
133 PF09580 Spore_YhcN_YlaJ: Spor 74.6 17 0.00037 22.3 5.8 21 36-56 78-98 (177)
134 COG1781 PyrI Aspartate carbamo 68.4 4.6 0.0001 24.8 1.9 30 17-47 51-80 (153)
135 PRK15348 type III secretion sy 66.0 36 0.00079 22.6 6.5 58 35-92 109-174 (249)
136 TIGR02898 spore_YhcN_YlaJ spor 62.0 30 0.00065 21.4 4.7 21 36-56 57-77 (158)
137 PF06739 SBBP: Beta-propeller 61.3 8.3 0.00018 17.7 1.7 14 6-19 19-32 (38)
138 PF01514 YscJ_FliF: Secretory 60.8 41 0.0009 21.5 6.5 60 33-92 115-183 (206)
139 PF12503 CMV_1a_C: Cucumber mo 60.2 2.7 6E-05 23.0 -0.1 20 21-40 26-48 (85)
140 COG1504 Uncharacterized conser 56.5 14 0.0003 21.7 2.3 47 7-56 19-69 (121)
141 PHA02553 6 baseplate wedge sub 56.1 31 0.00067 26.0 4.6 64 25-88 307-376 (611)
142 PF08478 POTRA_1: POTRA domain 55.4 8.7 0.00019 19.5 1.4 24 31-54 32-55 (69)
143 PLN02249 indole-3-acetic acid- 54.8 13 0.00029 27.7 2.6 30 12-44 427-456 (597)
144 TIGR02544 III_secr_YscJ type I 54.1 54 0.0012 20.8 6.9 59 34-92 108-175 (193)
145 COG0075 Serine-pyruvate aminot 54.0 20 0.00043 25.4 3.2 35 23-57 106-141 (383)
146 PF04865 Baseplate_J: Baseplat 52.7 31 0.00067 22.2 3.9 61 23-86 109-173 (243)
147 PRK09509 fieF ferrous iron eff 51.2 72 0.0016 21.4 5.9 57 35-91 215-276 (299)
148 PF07308 DUF1456: Protein of u 49.7 8.1 0.00018 20.4 0.7 20 25-44 22-41 (68)
149 PTZ00380 microtubule-associate 49.5 10 0.00022 22.4 1.1 12 5-16 92-103 (121)
150 COG4257 Vgb Streptogramin lyas 48.2 14 0.0003 25.4 1.7 17 4-20 152-168 (353)
151 PRK11179 DNA-binding transcrip 47.7 60 0.0013 19.4 5.1 20 36-55 84-103 (153)
152 PF04784 DUF547: Protein of un 46.9 22 0.00047 20.5 2.2 22 23-44 49-70 (117)
153 cd07749 NT_Pol-beta-like_1 Nuc 46.5 16 0.00035 22.6 1.7 42 1-42 89-130 (156)
154 PRK11169 leucine-responsive tr 45.4 69 0.0015 19.5 4.9 19 36-54 91-109 (164)
155 PF01545 Cation_efflux: Cation 44.5 88 0.0019 20.4 5.2 57 36-92 208-270 (284)
156 PRK12434 tRNA pseudouridine sy 44.5 90 0.0019 20.5 5.4 59 33-92 27-86 (245)
157 KOG3178|consensus 44.1 73 0.0016 22.3 4.7 65 28-92 202-267 (342)
158 PRK10877 protein disulfide iso 43.9 89 0.0019 20.3 5.5 45 4-56 57-104 (232)
159 COG3743 Uncharacterized conser 43.7 2.6 5.7E-05 25.2 -2.0 17 10-27 106-122 (133)
160 PF01948 PyrI: Aspartate carba 42.8 30 0.00066 19.6 2.3 32 17-49 48-79 (96)
161 KOG4008|consensus 42.3 17 0.00037 24.1 1.4 22 4-26 177-198 (261)
162 PRK00893 aspartate carbamoyltr 40.3 18 0.0004 22.2 1.2 29 19-48 52-80 (152)
163 PF07494 Reg_prop: Two compone 39.9 25 0.00055 14.2 1.3 11 6-16 11-21 (24)
164 smart00426 TEA TEA domain. 39.8 17 0.00037 19.2 1.0 15 30-44 2-16 (68)
165 TIGR01297 CDF cation diffusion 39.7 1.1E+02 0.0023 19.9 6.9 58 34-91 193-256 (268)
166 PF12757 DUF3812: Protein of u 39.1 29 0.00063 20.5 2.0 22 23-44 58-80 (126)
167 PF08789 PBCV_basic_adap: PBCV 38.0 35 0.00076 16.1 1.8 33 5-38 2-34 (40)
168 PRK00819 RNA 2'-phosphotransfe 37.6 13 0.00027 23.4 0.3 35 6-47 27-64 (179)
169 PF00403 HMA: Heavy-metal-asso 36.4 57 0.0012 15.9 5.1 46 35-88 13-58 (62)
170 PF10411 DsbC_N: Disulfide bon 35.9 32 0.00069 17.2 1.6 16 4-19 35-50 (57)
171 TIGR00240 ATCase_reg aspartate 35.8 24 0.00051 21.7 1.2 30 18-48 49-78 (150)
172 PRK14588 tRNA pseudouridine sy 35.3 1.4E+02 0.003 20.0 5.4 59 33-92 26-85 (272)
173 PF11848 DUF3368: Domain of un 35.0 17 0.00036 17.6 0.4 18 27-44 29-46 (48)
174 PF09979 DUF2213: Uncharacteri 34.8 93 0.002 19.4 3.8 40 5-45 3-60 (170)
175 PF12101 DUF3577: Protein of u 33.5 29 0.00062 21.0 1.3 25 13-38 107-131 (137)
176 PF04443 LuxE: Acyl-protein sy 33.4 34 0.00073 23.9 1.9 30 1-34 322-359 (365)
177 COG5126 FRQ1 Ca2+-binding prot 33.1 14 0.0003 22.9 -0.0 36 8-47 104-139 (160)
178 cd04888 ACT_PheB-BS C-terminal 32.0 69 0.0015 16.2 2.6 30 26-55 47-76 (76)
179 PF06026 Rib_5-P_isom_A: Ribos 30.8 1.2E+02 0.0027 18.9 3.9 24 31-54 134-157 (173)
180 PRK13978 ribose-5-phosphate is 30.8 1.6E+02 0.0035 19.4 4.9 22 33-54 187-208 (228)
181 COG2390 DeoR Transcriptional r 30.7 68 0.0015 22.2 2.9 35 23-57 53-89 (321)
182 TIGR00071 hisT_truA pseudourid 29.6 1.6E+02 0.0035 19.0 5.2 57 33-92 25-84 (227)
183 PF13342 Toprim_Crpt: C-termin 29.3 49 0.0011 17.0 1.6 41 28-74 11-53 (62)
184 PF01883 DUF59: Domain of unkn 28.6 84 0.0018 16.0 2.5 18 35-52 54-71 (72)
185 COG1213 Predicted sugar nucleo 28.4 94 0.002 20.7 3.1 34 20-55 20-53 (239)
186 TIGR02243 conserved hypothetic 28.2 1.2E+02 0.0026 23.1 4.1 47 25-72 493-541 (656)
187 COG4669 EscJ Type III secretor 28.2 1.9E+02 0.0041 19.4 7.1 57 36-92 112-177 (246)
188 COG0101 TruA Pseudouridylate s 28.1 1.9E+02 0.0042 19.4 5.2 58 34-92 27-85 (266)
189 TIGR03319 YmdA_YtgF conserved 27.8 63 0.0014 23.8 2.5 34 33-71 437-470 (514)
190 TIGR00206 fliF flagellar basal 27.7 2.6E+02 0.0057 20.9 6.8 70 23-92 125-204 (555)
191 PF00853 Runt: Runt domain; I 27.5 27 0.00058 20.9 0.5 13 13-25 87-99 (135)
192 PF01885 PTS_2-RNA: RNA 2'-pho 27.0 16 0.00034 23.1 -0.6 36 6-48 26-64 (186)
193 cd02570 PseudoU_synth_EcTruA P 26.2 1.9E+02 0.0041 18.8 5.1 58 32-92 20-80 (239)
194 PF13453 zf-TFIIB: Transcripti 25.2 72 0.0016 14.6 1.7 16 28-43 25-40 (41)
195 KOG2768|consensus 25.0 70 0.0015 21.0 2.1 30 2-45 148-177 (231)
196 PRK00021 truA tRNA pseudouridi 25.0 2.1E+02 0.0045 18.7 5.0 56 34-92 27-85 (244)
197 PRK00106 hypothetical protein; 24.9 27 0.00058 25.9 0.2 22 34-55 459-480 (535)
198 PF01342 SAND: SAND domain; I 24.5 1.1E+02 0.0023 16.7 2.5 23 20-42 31-53 (82)
199 COG3761 NADH:ubiquinone oxidor 24.4 62 0.0013 18.7 1.6 26 7-32 18-47 (118)
200 PF15568 Imm20: Immunity prote 24.3 34 0.00074 19.9 0.5 18 29-46 22-39 (129)
201 KOG2446|consensus 23.9 34 0.00074 25.0 0.6 50 20-70 106-155 (546)
202 cd02568 PseudoU_synth_PUS1_PUS 23.9 2.2E+02 0.0047 18.6 4.6 61 32-92 21-95 (245)
203 PF13180 PDZ_2: PDZ domain; PD 23.8 1.1E+02 0.0024 15.9 2.5 24 23-46 36-60 (82)
204 TIGR00489 aEF-1_beta translati 23.2 1.5E+02 0.0032 16.4 3.3 25 31-55 60-84 (88)
205 KOG2863|consensus 22.6 79 0.0017 22.6 2.1 19 12-34 103-121 (456)
206 COG0120 RpiA Ribose 5-phosphat 22.4 74 0.0016 20.9 1.9 25 30-54 182-206 (227)
207 PF01052 SpoA: Surface present 22.3 1.3E+02 0.0028 15.6 2.5 22 4-25 44-65 (77)
208 PF09154 DUF1939: Domain of un 22.0 96 0.0021 15.6 1.9 15 2-16 33-47 (57)
209 COG3592 Uncharacterized conser 21.9 72 0.0016 17.0 1.4 19 29-47 48-66 (74)
210 PRK14586 tRNA pseudouridine sy 21.9 2.4E+02 0.0053 18.5 4.9 58 33-92 26-86 (245)
211 cd05126 Mth938 Mth938 domain. 21.6 1.8E+02 0.0039 16.8 3.8 44 9-56 6-66 (117)
212 TIGR00021 rpiA ribose 5-phosph 21.4 1.5E+02 0.0033 19.2 3.1 22 33-54 181-202 (218)
213 COG4835 Uncharacterized protei 20.7 30 0.00065 20.2 -0.2 26 12-40 63-89 (124)
214 COG2221 DsrA Dissimilatory sul 20.4 1.4E+02 0.003 20.8 2.9 31 9-46 58-88 (317)
215 cd00762 NAD_bind_malic_enz NAD 20.4 36 0.00079 22.7 0.1 46 5-54 154-200 (254)
216 COG0034 PurF Glutamine phospho 20.1 1.7E+02 0.0037 21.5 3.3 43 12-60 250-294 (470)
No 1
>KOG1176|consensus
Probab=99.93 E-value=8.5e-26 Score=158.83 Aligned_cols=89 Identities=34% Similarity=0.532 Sum_probs=85.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.||.||+|+|||+||.+|. ||+||++|++|+|.|||++|.+||.|.||||+|.+++.+|+.++|+|+++++...+++
T Consensus 412 TGDiGy~D~DG~l~IvdR~---KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~ 488 (537)
T KOG1176|consen 412 TGDLGYFDEDGYLYIVDRS---KDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEK 488 (537)
T ss_pred cCceEEEcCCCeEEEecch---hhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHH
Confidence 4899999999999999776 9999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
++.++|+++|++
T Consensus 489 di~~~v~k~l~~ 500 (537)
T KOG1176|consen 489 DIIEYVRKKLPA 500 (537)
T ss_pred HHHHHHHhhCCh
Confidence 999999999985
No 2
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.86 E-value=3.7e-21 Score=135.24 Aligned_cols=88 Identities=30% Similarity=0.416 Sum_probs=77.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
++|.++.|+|||++|.||. ||+||+.|+++.|.|||++|.+||.|.||+|+|.+++..++.+++||+++++...+
T Consensus 400 tGD~~~~DedGy~~i~GR~---DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L 476 (528)
T COG0365 400 TGDWAERDEDGYFWLHGRS---DDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNEL 476 (528)
T ss_pred cCceeEEccCCCEEEEeec---cceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHH
Confidence 5899999999999999888 99999999999999999999999999999999999999999999999999886444
Q ss_pred HHHHHHHHcCcCC
Q psy12100 79 EQEISSYVEPKKP 91 (93)
Q Consensus 79 ~~~l~~~~~~~L~ 91 (93)
.++|++++++.+.
T Consensus 477 ~~ei~~~vr~~~~ 489 (528)
T COG0365 477 AEEIRRHVARNIG 489 (528)
T ss_pred HHHHHHHHHhccC
Confidence 3566666655443
No 3
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=5.1e-21 Score=134.68 Aligned_cols=89 Identities=29% Similarity=0.461 Sum_probs=82.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC--CCcC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG--VELT 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~ 78 (93)
+||.+++|++|+++|+||. ||+|+++|+||+|.|||+++.+||.|.+++|++++++.+++.++++++++++ ...+
T Consensus 405 TGDlg~~d~~G~l~i~gR~---kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~ 481 (534)
T COG0318 405 TGDLGYVDEDGYLYIVGRL---KDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELT 481 (534)
T ss_pred ecceEEEcCCccEEEEecc---ceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCC
Confidence 5899999999999999887 9999999999999999999999999999999999999999999999999876 3447
Q ss_pred HHHHHHHHcCcCCC
Q psy12100 79 EQEISSYVEPKKPV 92 (93)
Q Consensus 79 ~~~l~~~~~~~L~~ 92 (93)
.+++.++|+.+|+.
T Consensus 482 ~~~i~~~~~~~l~~ 495 (534)
T COG0318 482 AEELRAFLRKRLAL 495 (534)
T ss_pred HHHHHHHHHhhhhc
Confidence 89999999987765
No 4
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.84 E-value=2.1e-20 Score=134.06 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=81.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE- 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~- 79 (93)
.||.+++|+||++++.||. ||+||++|+||+|.|||++|.+||+|.+++|++++++.+++.++++|+++++...+.
T Consensus 503 tGDlg~~d~dG~l~i~GR~---dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~ 579 (652)
T TIGR01217 503 HGDWITLTPRGGIVIHGRS---DSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDA 579 (652)
T ss_pred cCCcEEECCCCcEEEEecc---cCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHH
Confidence 3899999999999999887 999999999999999999999999999999999999988999999999987755443
Q ss_pred --HHHHHHHcCcCCCC
Q psy12100 80 --QEISSYVEPKKPVL 93 (93)
Q Consensus 80 --~~l~~~~~~~L~~~ 93 (93)
++|+++++++|+++
T Consensus 580 ~~~~l~~~~~~~l~~~ 595 (652)
T TIGR01217 580 LLDRIKRTIRAGLSPR 595 (652)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 58999999888763
No 5
>KOG1175|consensus
Probab=99.84 E-value=1.3e-20 Score=133.86 Aligned_cols=90 Identities=27% Similarity=0.362 Sum_probs=80.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
.||.++.|++||++++||+ ||+||++|+++++.|||+++.+||.|.|++|+|.+++..++.+.+|++++++....
T Consensus 479 tGD~~~rd~dGY~~i~GR~---DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~ 555 (626)
T KOG1175|consen 479 TGDGGRRDEDGYYWILGRV---DDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQ 555 (626)
T ss_pred ecCceEEcCCceEEEEecc---cccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHH
Confidence 3899999999999999888 99999999999999999999999999999999999999999999999999885432
Q ss_pred -HHHHHHHHcCcCCCC
Q psy12100 79 -EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 -~~~l~~~~~~~L~~~ 93 (93)
.++|+.++++.+.++
T Consensus 556 L~kel~~~VR~~igp~ 571 (626)
T KOG1175|consen 556 LTKELVKHVRSVIGPY 571 (626)
T ss_pred HHHHHHHHHHhhcCcc
Confidence 257778888777654
No 6
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.83 E-value=2.8e-20 Score=129.56 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=73.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc-CCCcceEEEEeeeCCCCC-ceEEEEE---EECCCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ-IAGVADVAVVGVPDTLSG-EVPKAFV---VKKPGV 75 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~ 75 (93)
+||.+++|+||+++|.||. ||+||++|+||+|.|||++|.+ ||+|.+|+|++++++..+ +.++++| +++++.
T Consensus 361 TGDlg~~d~dG~l~~~gR~---~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~ 437 (499)
T PLN03051 361 HGDIMKRTPGGYFCVQGRA---DDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGF 437 (499)
T ss_pred cCCeEEECCCCcEEEEecc---CCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccc
Confidence 4899999999999999887 9999999999999999999986 999999999999998887 6788888 776654
Q ss_pred -CcCHHHHHHHHcC
Q psy12100 76 -ELTEQEISSYVEP 88 (93)
Q Consensus 76 -~~~~~~l~~~~~~ 88 (93)
..+.++++++|++
T Consensus 438 ~~~~~~~l~~~~~~ 451 (499)
T PLN03051 438 DQARPEALQKKFQE 451 (499)
T ss_pred cccchHHHHHHHHH
Confidence 3556677766643
No 7
>PLN02654 acetate-CoA ligase
Probab=99.83 E-value=7.4e-20 Score=131.53 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=80.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE- 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~- 79 (93)
+||.+++|+||+++|.||. ||+||++|+||+|.|||++|.+||+|.+++|++++++..++.++++|+++++...+.
T Consensus 517 TGD~~~~d~dG~l~i~GR~---dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~ 593 (666)
T PLN02654 517 SGDGCSRDKDGYYWLTGRV---DDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEE 593 (666)
T ss_pred eCceEEECCCCcEEEeeec---cCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHH
Confidence 4899999999999999888 999999999999999999999999999999999999988999999999987754433
Q ss_pred --HHHHHHHcCcCCCC
Q psy12100 80 --QEISSYVEPKKPVL 93 (93)
Q Consensus 80 --~~l~~~~~~~L~~~ 93 (93)
++|+++++++|+++
T Consensus 594 l~~~l~~~~~~~L~~~ 609 (666)
T PLN02654 594 LRKSLILTVRNQIGAF 609 (666)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 47888888888753
No 8
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.82 E-value=1.5e-19 Score=129.43 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=80.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE- 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~- 79 (93)
.||.+++|+||+++|.||. ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++...+.
T Consensus 502 TGDl~~~d~dG~l~i~GR~---dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~ 578 (655)
T PRK03584 502 HGDWIEITEHGGVVIYGRS---DATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDA 578 (655)
T ss_pred cCCeEEECCCCeEEEEeec---cCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHH
Confidence 4899999999999999887 999999999999999999999999999999999999888899999999987654443
Q ss_pred --HHHHHHHcCcCCCC
Q psy12100 80 --QEISSYVEPKKPVL 93 (93)
Q Consensus 80 --~~l~~~~~~~L~~~ 93 (93)
++++++++++|+++
T Consensus 579 ~~~~l~~~~~~~L~~~ 594 (655)
T PRK03584 579 LRARIRTTIRTNLSPR 594 (655)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 68899999888764
No 9
>KOG1177|consensus
Probab=99.82 E-value=9.4e-20 Score=125.67 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=83.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC--cC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE--LT 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~~ 78 (93)
.||.+++|++|+++|.||. ||||+.+|+||||.|||+.|.+||.|.++.|+|++++..|+.++|++.++.+.. .+
T Consensus 465 TGDi~~m~enG~i~iVGRs---kdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t 541 (596)
T KOG1177|consen 465 TGDIAVMDENGTIEIVGRS---KDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTT 541 (596)
T ss_pred cCceEEEcCCCcEEEEEcc---cCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccccc
Confidence 4899999999999999877 999999999999999999999999999999999999999999999999987764 47
Q ss_pred HHHHHHHHcCcCCCC
Q psy12100 79 EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 ~~~l~~~~~~~L~~~ 93 (93)
.+.|+.+|+.+|..|
T Consensus 542 ~E~lKa~Ck~klaHF 556 (596)
T KOG1177|consen 542 AETLKAMCKGKLAHF 556 (596)
T ss_pred HHHHHHHHhcccccc
Confidence 899999999998764
No 10
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.81 E-value=1.4e-19 Score=129.04 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=79.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL--- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 77 (93)
.||.+++|++|++++.||. ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++++++++...
T Consensus 476 TGD~g~~d~dG~l~i~GR~---dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~ 552 (628)
T TIGR02316 476 SFDWGIRDEDGYTFILGRT---DDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDA 552 (628)
T ss_pred CCceEEEcCCCcEEEEEcC---cceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccc
Confidence 4799999999999999887 9999999999999999999999999999999999999889999999998765321
Q ss_pred -----CHHHHHHHHcCcCCCC
Q psy12100 78 -----TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 -----~~~~l~~~~~~~L~~~ 93 (93)
..++|+++++++|+++
T Consensus 553 ~~~~~~~~~i~~~~~~~L~~~ 573 (628)
T TIGR02316 553 HDPHAVETGMMDCVVRQLGAV 573 (628)
T ss_pred cchHHHHHHHHHHHHHhcCCC
Confidence 2468999999988764
No 11
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.81 E-value=2.8e-19 Score=123.69 Aligned_cols=89 Identities=25% Similarity=0.332 Sum_probs=80.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.+++|+||++++.||. ||+||++|+||+|.+||+.|.+||+|.+|+|++.+++..++.++++++..++ ..+.+
T Consensus 328 TGDl~~~d~dG~l~~~GR~---dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~ 403 (452)
T PRK07445 328 TDDLGYLDAQGYLHILGRN---SQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLE 403 (452)
T ss_pred CCCEEEEcCCCCEEEEeec---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999998888889999988655 35678
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 404 ~l~~~~~~~L~~~ 416 (452)
T PRK07445 404 ELKTAIKDQLSPF 416 (452)
T ss_pred HHHHHHHHhCCcc
Confidence 9999999988754
No 12
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.80 E-value=5.3e-19 Score=126.81 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=78.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC---Cc
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---EL 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---~~ 77 (93)
.||.+++|++|+++|.||. ||+||++|+||+|.|||++|.+||.|.+++|++++++..++.++++|+++++. ..
T Consensus 496 TGDlg~~d~dG~l~i~GR~---dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~ 572 (647)
T PTZ00237 496 SGDLGFKDENGYYTIVSRS---DDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSI 572 (647)
T ss_pred CCcEEEECCCCeEEEEecc---CCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCC
Confidence 4899999999999999888 99999999999999999999999999999999999998889999999987432 22
Q ss_pred CH----HHHHHHHcCcCCCC
Q psy12100 78 TE----QEISSYVEPKKPVL 93 (93)
Q Consensus 78 ~~----~~l~~~~~~~L~~~ 93 (93)
+. ++|+++++++|+++
T Consensus 573 ~~~~l~~~i~~~~~~~l~~~ 592 (647)
T PTZ00237 573 DLNKLKNEINNIITQDIESL 592 (647)
T ss_pred CHHHHHHHHHHHHHhhcCcc
Confidence 32 46678888877753
No 13
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.80 E-value=7.2e-19 Score=125.47 Aligned_cols=90 Identities=24% Similarity=0.368 Sum_probs=81.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||++|.++|+|.+++|++.+++..++.+++++++.++...+
T Consensus 487 TGDl~~~d~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~ 563 (637)
T PRK00174 487 TGDGARRDEDGYYWITGRV---DDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDE 563 (637)
T ss_pred CCceEEEcCCCcEEEEEec---ccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHH
Confidence 5899999999999999887 99999999999999999999999999999999999988889999999998765443
Q ss_pred -HHHHHHHHcCcCCCC
Q psy12100 79 -EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 -~~~l~~~~~~~L~~~ 93 (93)
.++|+++++++|+.+
T Consensus 564 ~~~~l~~~l~~~l~~~ 579 (637)
T PRK00174 564 LRKELRNWVRKEIGPI 579 (637)
T ss_pred HHHHHHHHHHhhcCCc
Confidence 468999999888753
No 14
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.80 E-value=6.6e-19 Score=125.37 Aligned_cols=90 Identities=24% Similarity=0.381 Sum_probs=81.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++|++|++++.||. ||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++++++.++...+
T Consensus 479 TGDl~~~d~dG~l~i~GR~---dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~ 555 (625)
T TIGR02188 479 TGDGARRDKDGYIWITGRV---DDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDE 555 (625)
T ss_pred CCceEEEcCCCcEEEEecc---cCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHH
Confidence 4899999999999999887 99999999999999999999999999999999999988889999999998775543
Q ss_pred -HHHHHHHHcCcCCCC
Q psy12100 79 -EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 -~~~l~~~~~~~L~~~ 93 (93)
.++|+++++++|+++
T Consensus 556 ~~~~l~~~~~~~l~~~ 571 (625)
T TIGR02188 556 LRKELRKHVRKEIGPI 571 (625)
T ss_pred HHHHHHHHHHhhcCCC
Confidence 368999999888753
No 15
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.80 E-value=4.7e-19 Score=124.29 Aligned_cols=90 Identities=27% Similarity=0.371 Sum_probs=83.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.+||+.|.++|+|.+++|++.+++..++.++++++++++...+.+
T Consensus 431 TGDl~~~~~~g~l~~~GR~---dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~ 507 (549)
T PRK07788 431 SGDVGYFDEDGLLFVDGRD---DDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDED 507 (549)
T ss_pred cCceEEEcCCCCEEEeccC---cceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999998888999999999877677889
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 508 ~l~~~~~~~l~~~ 520 (549)
T PRK07788 508 AIKDYVRDNLARY 520 (549)
T ss_pred HHHHHHHHhhhcC
Confidence 9999999988764
No 16
>PRK07529 AMP-binding domain protein; Validated
Probab=99.80 E-value=6.1e-19 Score=126.02 Aligned_cols=88 Identities=26% Similarity=0.427 Sum_probs=81.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.+||+.|.+||+|.+|+|++.+++..++.++++|++.++...+.+
T Consensus 449 TGDlg~~d~dG~l~i~GR~---~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~ 525 (632)
T PRK07529 449 TGDLGRIDADGYFWLTGRA---KDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEA 525 (632)
T ss_pred cCcEEEEcCCceEEEEecc---cCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999998888999999999888777888
Q ss_pred HHHHHHcCcCC
Q psy12100 81 EISSYVEPKKP 91 (93)
Q Consensus 81 ~l~~~~~~~L~ 91 (93)
+++++++++|+
T Consensus 526 ~l~~~~~~~l~ 536 (632)
T PRK07529 526 ELLAFARDHIA 536 (632)
T ss_pred HHHHHHHHhcc
Confidence 99999988875
No 17
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.79 E-value=1.1e-18 Score=129.99 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=78.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|+||+++|.||. ||+||++|.||+|.|||++|.+||.|.+|+|++++++. ++.++++|+++++...+.+
T Consensus 840 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~ 915 (994)
T PRK07868 840 TEYLFRRDDDGDYWLVDRR---GSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITAA 915 (994)
T ss_pred ccceEEEcCCCCEEEeccC---CCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCCHH
Confidence 4899999999999999888 99999999999999999999999999999999998875 5788999998877777889
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+|++++++ |+.+
T Consensus 916 ~L~~~l~~-l~~y 927 (994)
T PRK07868 916 DLTEALAS-LPVG 927 (994)
T ss_pred HHHHHHHh-CCCC
Confidence 99999985 7653
No 18
>PLN02574 4-coumarate--CoA ligase-like
Probab=99.77 E-value=2.6e-18 Score=121.05 Aligned_cols=90 Identities=24% Similarity=0.457 Sum_probs=81.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.++++++.+++..++.++++++.+++...+.+
T Consensus 434 TGDlg~~~~~G~l~i~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~ 510 (560)
T PLN02574 434 TGDIAYFDEDGYLYIVDRL---KEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQE 510 (560)
T ss_pred cceEEEEECCCeEEEEecc---hhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999988888889999998876666778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++++++|+++
T Consensus 511 ~l~~~~~~~l~~~ 523 (560)
T PLN02574 511 AVINYVAKQVAPY 523 (560)
T ss_pred HHHHHHHHhccCc
Confidence 9999999988763
No 19
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.77 E-value=4e-18 Score=121.49 Aligned_cols=90 Identities=30% Similarity=0.377 Sum_probs=79.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL--- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 77 (93)
.||.+++|++|++++.||. ||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++++++++++...
T Consensus 477 TGDl~~~d~dG~l~i~GR~---dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~ 553 (629)
T PRK10524 477 TFDWGIRDADGYYFILGRT---DDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADR 553 (629)
T ss_pred cCCcEEEcCCCcEEEEEEe---cCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccc
Confidence 4799999999999999888 9999999999999999999999999999999999998888999999998765322
Q ss_pred -----CHHHHHHHHcCcCCCC
Q psy12100 78 -----TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 -----~~~~l~~~~~~~L~~~ 93 (93)
..++++++++++|+.+
T Consensus 554 ~~~~~~~~~i~~~~~~~l~~~ 574 (629)
T PRK10524 554 EARLALEKEIMALVDSQLGAV 574 (629)
T ss_pred cchHHHHHHHHHHHHhhcCCC
Confidence 1367888998888753
No 20
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.77 E-value=4.3e-18 Score=119.45 Aligned_cols=89 Identities=19% Similarity=0.321 Sum_probs=80.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++++|++++.||. ||+|+++|+||+|.+||+.|.++|+|.+++|++.+++..++.+++++++.++...+..
T Consensus 385 TGD~~~~~~~g~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~ 461 (529)
T PRK07867 385 SGDLAYRDADGYAYFAGRL---GDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPD 461 (529)
T ss_pred eccEEEEeCCCcEEEeccc---cCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999998888999999999877777888
Q ss_pred HHHHHHcCc--CCC
Q psy12100 81 EISSYVEPK--KPV 92 (93)
Q Consensus 81 ~l~~~~~~~--L~~ 92 (93)
+++++++.+ |+.
T Consensus 462 ~l~~~~~~~~~l~~ 475 (529)
T PRK07867 462 AFAEFLAAQPDLGP 475 (529)
T ss_pred HHHHHHHhhccCCc
Confidence 999998764 654
No 21
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.77 E-value=6.6e-18 Score=113.31 Aligned_cols=89 Identities=24% Similarity=0.205 Sum_probs=80.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.+++ .+|++++.||. ||+||++|++|+|.+||+.|.++|+|.+|+|++.+++..++.++++++...+.....+
T Consensus 238 TGDl~~~-~~g~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~ 313 (358)
T PRK07824 238 TDDLGAL-DDGVLTVLGRA---DDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLE 313 (358)
T ss_pred cccEEEE-eCCEEEEEecc---CCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHH
Confidence 4788999 89999999887 9999999999999999999999999999999999988888889999887766667788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 314 ~i~~~~~~~l~~~ 326 (358)
T PRK07824 314 ALRAHVARTLDRT 326 (358)
T ss_pred HHHHHHHhhCccc
Confidence 9999999988753
No 22
>PRK13382 acyl-CoA synthetase; Provisional
Probab=99.76 E-value=4.5e-18 Score=119.37 Aligned_cols=90 Identities=26% Similarity=0.291 Sum_probs=82.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.+||+.|.++|+|.+++|++.+++..++.+++++++.++...+.+
T Consensus 420 TGDl~~~~~~g~l~~~GR~---dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~ 496 (537)
T PRK13382 420 SGDVGYLDENGRLFVVGRD---DEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPE 496 (537)
T ss_pred eCceEEEeCCCcEEEeccc---cceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999988778889999998877667788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 497 ~l~~~l~~~l~~~ 509 (537)
T PRK13382 497 TLKQHVRDNLANY 509 (537)
T ss_pred HHHHHHHHhccCC
Confidence 9999999988763
No 23
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.76 E-value=5.7e-18 Score=119.94 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=80.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL--- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 77 (93)
+||.+++|++|++++.||. ||+||++|++|+|.+||+.|.+||.|.+++|++++++..++.+++++++.++...
T Consensus 424 TGDlg~~d~dG~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 500 (579)
T PLN03102 424 TGDVGVIHPDGHVEIKDRS---KDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKED 500 (579)
T ss_pred cCceEEEcCCCeEEEEecc---CcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccccc
Confidence 5899999999999999887 9999999999999999999999999999999999998888899999998765332
Q ss_pred -------CHHHHHHHHcCcCCCC
Q psy12100 78 -------TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 -------~~~~l~~~~~~~L~~~ 93 (93)
+..+++++++++|+.+
T Consensus 501 ~~~~~~~~~~~l~~~~~~~L~~~ 523 (579)
T PLN03102 501 RVDKLVTRERDLIEYCRENLPHF 523 (579)
T ss_pred ccccccccHHHHHHHHHhhcccc
Confidence 3568999999988764
No 24
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.76 E-value=7.6e-18 Score=118.78 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=79.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-----
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV----- 75 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----- 75 (93)
+||.+++|.+|++++.||. ||+||++|+||+|.+||+.+.+||+|.+++|++.+++..++.+++++++.++.
T Consensus 418 TGDl~~~d~dG~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~ 494 (563)
T PLN02860 418 TGDIGWIDKAGNLWLIGRS---NDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDN 494 (563)
T ss_pred ccceEEEcCCCCEEEeecc---cceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccc
Confidence 4899999999999999887 99999999999999999999999999999999999988889999999987652
Q ss_pred ---------CcCHHHHHHHHcC-cCCCC
Q psy12100 76 ---------ELTEQEISSYVEP-KKPVL 93 (93)
Q Consensus 76 ---------~~~~~~l~~~~~~-~L~~~ 93 (93)
..+.+++++++++ +|+++
T Consensus 495 ~~~~~~~~~~~~~~~l~~~~~~~~L~~~ 522 (563)
T PLN02860 495 EKENAKKNLTLSSETLRHHCREKNLSRF 522 (563)
T ss_pred cchhhcccccccHHHHHHHHhhCccccc
Confidence 2355788999987 47753
No 25
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.75 E-value=6.9e-18 Score=122.64 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=73.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhh-cCCCcceEEEEeeeCCCCC-ceEEEEEEEC--CCCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIM-QIAGVADVAVVGVPDTLSG-EVPKAFVVKK--PGVE 76 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~~~~ 76 (93)
.||.+++|++|+++|.||. ||+||++|+||+|.|||++|. .||+|.+++|++++++..+ +.++++|+++ ++..
T Consensus 593 tGDl~~~d~dG~l~i~GR~---Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~ 669 (728)
T PLN03052 593 HGDIFERTSGGYYRAHGRA---DDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN 669 (728)
T ss_pred cCceEEECCCCeEEEEecC---CCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC
Confidence 4799999999999999888 999999999999999999994 7999999999999988665 8899999987 5544
Q ss_pred cCHHHHHHH----HcCcCC
Q psy12100 77 LTEQEISSY----VEPKKP 91 (93)
Q Consensus 77 ~~~~~l~~~----~~~~L~ 91 (93)
.+.++|+++ ++++|+
T Consensus 670 ~~~~~L~~~i~~~i~~~l~ 688 (728)
T PLN03052 670 PDLNELKKIFNSAIQKKLN 688 (728)
T ss_pred CCHHHHHHHHHHHHHhhcC
Confidence 555555554 445544
No 26
>PRK09274 peptide synthase; Provisional
Probab=99.75 E-value=5.1e-18 Score=119.05 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=72.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||++|.+||+|.+|++++++++ .++.++++|++.++...+..
T Consensus 424 TGDlg~~d~dG~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~~~v~~~~~~~~~~~ 499 (552)
T PRK09274 424 MGDLGYLDAQGRLWFCGRK---AHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPVLCVELEPGVACSKS 499 (552)
T ss_pred cCCEEEEccCCcEEEEecc---CCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEEEEEEccCccccchH
Confidence 5899999999999999887 9999999999999999999999999999999999876 35678888888876655555
Q ss_pred HHHHHHcCcC
Q psy12100 81 EISSYVEPKK 90 (93)
Q Consensus 81 ~l~~~~~~~L 90 (93)
++.+.+++.+
T Consensus 500 ~l~~~l~~~l 509 (552)
T PRK09274 500 ALYQELRALA 509 (552)
T ss_pred HHhhhhHHHH
Confidence 5555555443
No 27
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.75 E-value=1.6e-17 Score=116.77 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=81.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++++|++++.||. +|+||++|.+|+|.+||+++.++|+|.+++|++++++..+..+.+++++..+...+..
T Consensus 404 TGD~~~~~~dG~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~ 480 (542)
T PRK06155 404 TGDRVVRDADGWFRFVDRI---KDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPV 480 (542)
T ss_pred ccceEEEcCCceEEEEecC---CCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999988777888888888877777889
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++|+++|+.+
T Consensus 481 ~~~~~~~~~l~~~ 493 (542)
T PRK06155 481 ALVRHCEPRLAYF 493 (542)
T ss_pred HHHHHHHhhCcCc
Confidence 9999999988763
No 28
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.75 E-value=9.1e-18 Score=115.58 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=78.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++| +|++++.||. ||+||++|.+|+|.+||+.|.++|+|.+++|++.+++..++.+++++++.. ..+.+
T Consensus 336 TGD~~~~~-~g~l~~~gR~---~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~ 409 (458)
T PRK09029 336 TRDRGEWQ-NGELTILGRL---DNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVV 409 (458)
T ss_pred CCCcEEEe-CCEEEEeccc---ccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHH
Confidence 58999999 9999999887 999999999999999999999999999999999999888889999888763 35678
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++|+++|+++
T Consensus 410 ~l~~~~~~~l~~~ 422 (458)
T PRK09029 410 NLAEWLQDKLARF 422 (458)
T ss_pred HHHHHHHhhchhc
Confidence 9999999998763
No 29
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.75 E-value=1.5e-17 Score=114.97 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=82.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. +|+|+++|.+|+|.+||+.|.++|+|.++++++.+++..++.+++++++.++...+.+
T Consensus 375 TGDl~~~~~~g~~~~~GR~---~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 451 (496)
T PRK06839 375 TGDLARVDEDGFVYIVGRK---KEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEK 451 (496)
T ss_pred ecceEEEcCCCcEEEeccc---cceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999998888899999999877777788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 452 ~l~~~~~~~l~~~ 464 (496)
T PRK06839 452 DVIEHCRLFLAKY 464 (496)
T ss_pred HHHHHHHhhCcCC
Confidence 9999999988764
No 30
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.75 E-value=1.1e-17 Score=118.63 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=76.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCC-CCceEEEEEEECCCCCcCH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTL-SGEVPKAFVVKKPGVELTE 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~ 79 (93)
.||.+++|++|++++.||. ||+||++|+||+|.|||+.|.++|+|.+|+|++++++. .+...++++++.++...+.
T Consensus 443 TGDlg~~~~dG~l~~~GR~---~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~ 519 (600)
T PRK08279 443 TGDLMRDDGFGHAQFVDRL---GDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDL 519 (600)
T ss_pred ecceEEEcCCccEEEeccc---CCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCH
Confidence 4799999999999999887 99999999999999999999999999999999998764 2444556666665556678
Q ss_pred HHHHHHHcCcCCCC
Q psy12100 80 QEISSYVEPKKPVL 93 (93)
Q Consensus 80 ~~l~~~~~~~L~~~ 93 (93)
++++++|+++|+.+
T Consensus 520 ~~l~~~l~~~L~~~ 533 (600)
T PRK08279 520 AALAAHLYERLPAY 533 (600)
T ss_pred HHHHHHHHhhCccc
Confidence 99999999998864
No 31
>PRK09188 serine/threonine protein kinase; Provisional
Probab=99.75 E-value=1.7e-17 Score=112.77 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=73.0
Q ss_pred Cccccee-ccCCeEEEeeeeccccceeecCC---eeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC
Q psy12100 1 MEEEKAL-SVAPYKKLAGGVKFLETIPRNPA---GKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE 76 (93)
Q Consensus 1 ~~~~~~~-d~~g~~~~~GR~gR~~d~I~~~G---~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 76 (93)
+||.+++ |++|+++|.||. | +| +||+|. ||++|.+||+|.+|+|++++++.+++.++|+|++.. .
T Consensus 213 TGDlg~~~d~dG~l~~~gR~---~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~--~ 281 (365)
T PRK09188 213 TGKKVYNFITRGLFSWSDGE---G-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL--P 281 (365)
T ss_pred CCCEEEEEcCCCeEEEEecC---c-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC--C
Confidence 5899998 799999999887 5 78 799999 999999999999999999999999999999999863 3
Q ss_pred cCHHHHHHHHcCcCCC
Q psy12100 77 LTEQEISSYVEPKKPV 92 (93)
Q Consensus 77 ~~~~~l~~~~~~~L~~ 92 (93)
.+.++++++|+++|+.
T Consensus 282 ~~~~el~~~l~~~L~~ 297 (365)
T PRK09188 282 ADEKSLRARLAGAKPP 297 (365)
T ss_pred CCHHHHHHHHHhhchh
Confidence 5678999999999873
No 32
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.75 E-value=1.2e-17 Score=116.86 Aligned_cols=90 Identities=24% Similarity=0.400 Sum_probs=81.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.+++|+||++++.||. +|+||++|.+|+|.+||+++.++|+|.+|+|++.+++..++.++++++..+....+.+
T Consensus 412 TGD~~~~d~dG~l~~~gR~---~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~ 488 (534)
T PRK05852 412 TGDLGSLSAAGDLSIRGRI---KELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAE 488 (534)
T ss_pred cCceEEEeCCCcEEEEecc---hhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999988778889999988766556788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++++++|+.+
T Consensus 489 ~i~~~~~~~l~~~ 501 (534)
T PRK05852 489 ELVQFCRERLAAF 501 (534)
T ss_pred HHHHHHHHhcccc
Confidence 9999999988764
No 33
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.74 E-value=1.7e-17 Score=115.54 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=82.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|.||+|.+||+++.++|.|.++++++.+++..++.+.++++++++...+.+
T Consensus 402 TGDl~~~~~~g~~~~~GR~---~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~ 478 (517)
T PRK08008 402 TGDTGYVDEEGFFYFVDRR---CNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEE 478 (517)
T ss_pred ccceEEECCCCcEEEeecc---cceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHH
Confidence 4799999999999999887 9999999999999999999999999999999999988778889999999877666778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+++
T Consensus 479 ~l~~~~~~~l~~~ 491 (517)
T PRK08008 479 EFFAFCEQNMAKF 491 (517)
T ss_pred HHHHHHHhhcccc
Confidence 9999999988753
No 34
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.74 E-value=2.7e-17 Score=115.58 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=79.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|.+|++++.||. ||+||++|++|+|.+||+.|.++|+|.+|+|++.++...++.+++++++.++...+.+
T Consensus 384 TGD~~~~~~dg~l~i~GR~---~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~ 460 (540)
T PRK13388 384 SGDLAYRDADGWIYFAGRT---ADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPD 460 (540)
T ss_pred ccceEEEcCCCcEEEeccC---CceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999988778888888888877667788
Q ss_pred HHHHHHcCc--CCC
Q psy12100 81 EISSYVEPK--KPV 92 (93)
Q Consensus 81 ~l~~~~~~~--L~~ 92 (93)
+++++++.+ |++
T Consensus 461 ~l~~~l~~~~~l~~ 474 (540)
T PRK13388 461 AFAAFLAAQPDLGT 474 (540)
T ss_pred HHHHHHHhhccCCc
Confidence 899888753 554
No 35
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.74 E-value=1.9e-17 Score=116.16 Aligned_cols=90 Identities=20% Similarity=0.342 Sum_probs=81.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.++.|++|++++.||. +|+||++|++|+|.+||+.+.++|.|.+++++++++...++.++++++..++...+.+
T Consensus 413 TGD~~~~~~dg~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 489 (539)
T PRK07008 413 TGDVATIDADGFMQITDRS---KDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTRE 489 (539)
T ss_pred cCceEEEcCCCcEEEeecc---cCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHH
Confidence 4899999999999999887 9999999999999999999999999999999999988778888888888776666788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+++
T Consensus 490 ~l~~~~~~~l~~~ 502 (539)
T PRK07008 490 ELLAFYEGKVAKW 502 (539)
T ss_pred HHHHHHHhhcccc
Confidence 9999999988753
No 36
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.74 E-value=2.4e-17 Score=116.15 Aligned_cols=90 Identities=28% Similarity=0.426 Sum_probs=81.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++.|.+|++++.||. +|+||++|.+|+|.+||+.|.++|+|.+++|++++++..++.+++++++.++...+.+
T Consensus 437 TGDlg~~~~~G~l~i~GR~---~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~ 513 (562)
T PRK05677 437 TGDIALIQEDGYMRIVDRK---KDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKE 513 (562)
T ss_pred ccceEEECCCCcEEEEecC---cCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999988888889999988766667788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+++
T Consensus 514 ~l~~~~~~~l~~~ 526 (562)
T PRK05677 514 QVMEHMRANLTGY 526 (562)
T ss_pred HHHHHHHHhhhhc
Confidence 9999999988753
No 37
>PLN02246 4-coumarate--CoA ligase
Probab=99.73 E-value=2.8e-17 Score=115.14 Aligned_cols=90 Identities=29% Similarity=0.433 Sum_probs=81.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.++++++|++++.||. ||+||++|++|+|.+||+.|.++|+|.+++|++.++...++.++++++..++...+.+
T Consensus 416 TGD~~~~~~~g~l~~~GR~---dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 492 (537)
T PLN02246 416 TGDIGYIDDDDELFIVDRL---KELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITED 492 (537)
T ss_pred ecceEEEeCCCeEEEEecc---cceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999888888888999988876666778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 493 ~l~~~l~~~l~~~ 505 (537)
T PLN02246 493 EIKQFVAKQVVFY 505 (537)
T ss_pred HHHHHHHhhCcCc
Confidence 9999999988753
No 38
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.73 E-value=2.7e-17 Score=114.21 Aligned_cols=90 Identities=26% Similarity=0.320 Sum_probs=78.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++|++|++++.||. ||+||++|++|+|.+||+.|.++|+|.++++++++++..++.+++++++.++...+
T Consensus 383 tGDl~~~~~dg~l~~~gR~---~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~ 459 (501)
T PRK13390 383 VGDLGSVDEDGYLYLADRK---SFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDE 459 (501)
T ss_pred cCceEEECCCCeEEEeecc---ccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchh
Confidence 5899999999999999887 99999999999999999999999999999999999988888999998887654322
Q ss_pred -HHHHHHHHcCcCCCC
Q psy12100 79 -EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 -~~~l~~~~~~~L~~~ 93 (93)
.+++.++++.+|+.+
T Consensus 460 ~~~~l~~~~~~~l~~~ 475 (501)
T PRK13390 460 LARELIDYTRSRIAHY 475 (501)
T ss_pred hHHHHHHHHHHhcccC
Confidence 468888988888753
No 39
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.73 E-value=3.7e-17 Score=111.56 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=78.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.++.|++|++++.||. ||+||++|++|+|.+||+.+.++|+|.+++|++.+++..++.+.++++... ..+..
T Consensus 295 TGDl~~~~~dg~l~~~GR~---~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~ 369 (414)
T PRK08308 295 TKDLGYKSERGTLHFMGRM---DDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPV 369 (414)
T ss_pred CCceEEECCCccEEEeccc---CCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHH
Confidence 5899999999999999887 999999999999999999999999999999999999888888888887654 45778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 370 ~l~~~l~~~l~~~ 382 (414)
T PRK08308 370 QLREWCIQHLAPY 382 (414)
T ss_pred HHHHHHHHhCccc
Confidence 8999999988753
No 40
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.73 E-value=3.5e-17 Score=118.13 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=78.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++|.+|++++.||. ||+||++|+||+|.|||+.|.++|.|.+++|++.++...++.+++++++..+...+
T Consensus 369 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 445 (705)
T PRK06060 369 TRDRVCIDSDGWVTYRCRA---DDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGS 445 (705)
T ss_pred CCeeEEECCCceEEEeccc---CceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChH
Confidence 5899999999999999887 99999999999999999999999999999999999887788899999987654333
Q ss_pred -HHHHHHHHcCcCCCC
Q psy12100 79 -EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 -~~~l~~~~~~~L~~~ 93 (93)
..+++++++++|+.+
T Consensus 446 ~~~~i~~~l~~~L~~~ 461 (705)
T PRK06060 446 VMRDLHRGLLNRLSAF 461 (705)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 357888898888764
No 41
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.73 E-value=3.5e-17 Score=113.53 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=80.5
Q ss_pred cccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHH
Q psy12100 2 EEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQE 81 (93)
Q Consensus 2 ~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 81 (93)
+|.+++|.+|++++.||. +|+|+++|.+|+|.+||+.+.++|.|.+++|++.+++..++.++++++...+...+.++
T Consensus 399 GD~~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 475 (515)
T TIGR03098 399 GDTVRRDEEGFLYFVGRR---DEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAA 475 (515)
T ss_pred cceEEEcCCceEEEEecc---ccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHH
Confidence 789999999999999887 99999999999999999999999999999999999988888898888876666667889
Q ss_pred HHHHHcCcCCCC
Q psy12100 82 ISSYVEPKKPVL 93 (93)
Q Consensus 82 l~~~~~~~L~~~ 93 (93)
++++++++|+++
T Consensus 476 l~~~l~~~l~~~ 487 (515)
T TIGR03098 476 LLAECRARLPNY 487 (515)
T ss_pred HHHHHHhhCccc
Confidence 999999988753
No 42
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.73 E-value=4.5e-17 Score=113.63 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=81.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|++|+|.+||+.|.++|.|.++++++.++...++.+.+++++.++...+..
T Consensus 400 TGDl~~~d~~G~l~i~GR~---~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~ 476 (516)
T PRK13383 400 TGDMGYLDNAGRLFIVGRE---DDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAA 476 (516)
T ss_pred cceeEEEcCCccEEEeccc---cceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999988788899999998876666778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 477 ~l~~~~~~~l~~~ 489 (516)
T PRK13383 477 QLRDYLKDRVSRF 489 (516)
T ss_pred HHHHHHHHhcccC
Confidence 8999999888653
No 43
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.72 E-value=5.1e-17 Score=112.44 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=80.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+|+++|++|+|.+||+.|.++|.|.++++++.+++..++..++++++.++...+..
T Consensus 365 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 441 (488)
T PRK09088 365 TGDIARRDADGFFWVVDRK---KDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLE 441 (488)
T ss_pred ecceEEEcCCCcEEEeccc---cceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHH
Confidence 4799999999999999887 9999999999999999999999999999999999887777788888888766556778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++++++|+++
T Consensus 442 ~l~~~~~~~l~~~ 454 (488)
T PRK09088 442 RIRSHLSTRLAKY 454 (488)
T ss_pred HHHHHHHhhCcCC
Confidence 8999999888753
No 44
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.72 E-value=1.7e-17 Score=118.35 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=74.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc-CCCcce--EEEEeeeC-------------------
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ-IAGVAD--VAVVGVPD------------------- 58 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~-~~~v~~--~~v~~~~~------------------- 58 (93)
+||.++++ +|+++|.||. ||+||++|+||+|.|||+.|.+ ||.|.+ ++|+++++
T Consensus 468 TGDlg~~~-dG~l~i~GR~---~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~ 543 (631)
T PRK07769 468 TGDYGVYF-DGELYITGRV---KDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDP 543 (631)
T ss_pred ccccccEE-CCEEEEEccc---ccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEeccccccccccccccccccccc
Confidence 47889985 9999999887 9999999999999999999986 899987 88999988
Q ss_pred CCCCceEEEEEEECCCC-CcCHHHHHHHHcCcCC
Q psy12100 59 TLSGEVPKAFVVKKPGV-ELTEQEISSYVEPKKP 91 (93)
Q Consensus 59 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~L~ 91 (93)
+..++.+++++++.++. ..+..+|.++|+++|+
T Consensus 544 ~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~ 577 (631)
T PRK07769 544 EDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIA 577 (631)
T ss_pred CCCCccEEEEEEecCccccccHHHHHHHHHHHHH
Confidence 45678899999988763 4567888888887665
No 45
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.72 E-value=6.4e-17 Score=114.05 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=82.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.+++|++|++++.||. ||++|++|.+|+|.+||+.+.++|.|.++++++.++...++.+++++++.++...+..
T Consensus 449 TGD~~~~~~~g~l~i~gR~---dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~ 525 (573)
T PRK05605 449 TGDVVVMEEDGFIRIVDRI---KELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPE 525 (573)
T ss_pred cCCEEEEcCCCcEEEEecc---ccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHH
Confidence 4799999999999999887 9999999999999999999999999999999999988888899999998877667788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+|+++++++|+.+
T Consensus 526 ~l~~~~~~~l~~~ 538 (573)
T PRK05605 526 GLRAYCREHLTRY 538 (573)
T ss_pred HHHHHHHHhCccc
Confidence 9999999888753
No 46
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.72 E-value=4.3e-17 Score=115.02 Aligned_cols=90 Identities=29% Similarity=0.497 Sum_probs=79.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++|.+|++++.||. ||+||++|+||+|.+||+.|.++|.|.+++|++.+++..++.+++++++.++...+
T Consensus 436 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~ 512 (570)
T PRK04319 436 SGDSAYMDEDGYFWFQGRV---DDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEE 512 (570)
T ss_pred eCcEEEECCCeeEEEEecC---CCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHH
Confidence 4799999999999999887 99999999999999999999999999999999999988889999999987764433
Q ss_pred -HHHHHHHHcCcCCCC
Q psy12100 79 -EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 -~~~l~~~~~~~L~~~ 93 (93)
.++++++++++|+.+
T Consensus 513 ~~~~l~~~~~~~l~~~ 528 (570)
T PRK04319 513 LKEEIRGFVKKGLGAH 528 (570)
T ss_pred HHHHHHHHHHHhcccc
Confidence 268889998888753
No 47
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.72 E-value=5.8e-17 Score=112.63 Aligned_cols=90 Identities=23% Similarity=0.218 Sum_probs=81.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|.+|+|.+||+.+.++|.|.++++++.+++..++.+.+++++.++...+.+
T Consensus 412 TGD~~~~~~~g~l~~~GR~---~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 488 (533)
T PRK07798 412 PGDRARVEADGTITLLGRG---SVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLA 488 (533)
T ss_pred cCcEEEEcCCCcEEEEccc---cceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999888778888899988877667889
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 489 ~l~~~l~~~l~~~ 501 (533)
T PRK07798 489 ELRAHCRSSLAGY 501 (533)
T ss_pred HHHHHHhhhcccC
Confidence 9999999988653
No 48
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.72 E-value=7.4e-17 Score=112.98 Aligned_cols=90 Identities=29% Similarity=0.333 Sum_probs=81.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++.|++|++++.||. ||+||++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++...+..
T Consensus 420 TGDl~~~d~dg~l~~~GR~---~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~ 496 (545)
T PRK08162 420 TGDLAVLHPDGYIKIKDRS---KDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEE 496 (545)
T ss_pred cCceEEEcCCccEEEEecc---cceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999888777889999998876666788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++++++++.|+.+
T Consensus 497 ~l~~~~~~~l~~~ 509 (545)
T PRK08162 497 EIIAHCREHLAGF 509 (545)
T ss_pred HHHHHHHHhcccc
Confidence 9999999988763
No 49
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.72 E-value=6.1e-17 Score=112.14 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=81.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|.+|++++.||. ||+||++|.+++|.+||+.|.++|+|.++++++.+++..++.+.+++++.+....+..
T Consensus 377 TGDl~~~~~~g~l~~~GR~---~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 453 (497)
T PRK06145 377 SGDVGYLDEEGFLYLTDRK---KDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLE 453 (497)
T ss_pred ccceEEEcCCCcEEEeccc---cceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999988778889999998766666788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++++++|+++
T Consensus 454 ~l~~~~~~~l~~~ 466 (497)
T PRK06145 454 ALDRHCRQRLASF 466 (497)
T ss_pred HHHHHHHHhhhcC
Confidence 9999999988753
No 50
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.72 E-value=5.3e-17 Score=113.63 Aligned_cols=90 Identities=23% Similarity=0.366 Sum_probs=80.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC--CcC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV--ELT 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~ 78 (93)
.||.+++|.+|++++.||. ||+||++|.||+|.+||++|.++|+|.+++|++.++...++.++++++++++. ..+
T Consensus 420 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~ 496 (546)
T PRK08314 420 TGDLGRMDEEGYFFITDRL---KRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTT 496 (546)
T ss_pred cCCEEEEcCCCcEEEEecc---hhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCC
Confidence 4799999999999999887 99999999999999999999999999999999999887888899999987653 345
Q ss_pred HHHHHHHHcCcCCCC
Q psy12100 79 EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 ~~~l~~~~~~~L~~~ 93 (93)
.++++++|+++|+++
T Consensus 497 ~~~l~~~~~~~l~~~ 511 (546)
T PRK08314 497 EEEIIAWAREHMAAY 511 (546)
T ss_pred HHHHHHHHHHhcccC
Confidence 688999999988764
No 51
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.72 E-value=8.1e-17 Score=112.58 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=79.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+|+++|++|+|.+||+.|.++|+|.++++++.++...++.++++++++++ ..+..
T Consensus 412 TGDl~~~~~~g~l~~~gR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~ 487 (527)
T TIGR02275 412 TGDLVRLTPEGYIVVVGRA---KDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAA 487 (527)
T ss_pred cCceEEEcCCccEEEEecc---cceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999998888889999988755 35778
Q ss_pred HHHHHHcCc-CCC
Q psy12100 81 EISSYVEPK-KPV 92 (93)
Q Consensus 81 ~l~~~~~~~-L~~ 92 (93)
+++++++++ |+.
T Consensus 488 ~l~~~l~~~~l~~ 500 (527)
T TIGR02275 488 QLRRFLRERGLAE 500 (527)
T ss_pred HHHHHHHhCCCcc
Confidence 999999875 765
No 52
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.71 E-value=5.6e-17 Score=113.89 Aligned_cols=90 Identities=26% Similarity=0.373 Sum_probs=81.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++++|++++.||. +|+|+++|++|+|.+||+.|.++|.|.+++|+++++...++.+++++++.++...+.+
T Consensus 421 TGD~~~~~~dG~l~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~ 497 (546)
T PLN02330 421 TGDIGYIDDDGDIFIVDRI---KELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEE 497 (546)
T ss_pred cccEEEEeCCCcEEEEech---HHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999988888889999998876666778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++.+|+.+
T Consensus 498 ~l~~~~~~~l~~~ 510 (546)
T PLN02330 498 DILNFVAANVAHY 510 (546)
T ss_pred HHHHHHHHhcccc
Confidence 8999999988753
No 53
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.71 E-value=9.9e-17 Score=112.00 Aligned_cols=90 Identities=26% Similarity=0.407 Sum_probs=80.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.+++|.+|++++.||. ||+||++|++|+|.+||+.+.++|.|.++++++.+++..++.++++++..++...+.+
T Consensus 398 TGDl~~~~~~g~l~~~GR~---dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (528)
T PRK07470 398 TGDLGHLDARGFLYITGRA---SDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEA 474 (528)
T ss_pred cceeEEEccCCeEEEeCCc---cceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHH
Confidence 4799999999999999887 9999999999999999999999999999999999998777888888888776667788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++++++++.|+++
T Consensus 475 ~~~~~l~~~l~~~ 487 (528)
T PRK07470 475 ELLAWLDGKVARY 487 (528)
T ss_pred HHHHHHHHhhhcC
Confidence 9999999888753
No 54
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.71 E-value=8.5e-17 Score=113.30 Aligned_cols=90 Identities=28% Similarity=0.411 Sum_probs=81.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++.+|++++.||. +|+|+++|.+|+|.+||+.+.++|+|.++++++.+++..++.+++++++.++...+.+
T Consensus 446 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 522 (567)
T PRK06178 446 TGDIGKIDEQGFLHYLGRR---KEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAA 522 (567)
T ss_pred ecceEEEecCCeEEEEecc---cccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHH
Confidence 4799999999999999887 9999999999999999999999999999999999887777889999998776666788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 523 ~l~~~~~~~l~~~ 535 (567)
T PRK06178 523 ALQAWCRENMAVY 535 (567)
T ss_pred HHHHHHHhcCccc
Confidence 9999999988753
No 55
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.71 E-value=1.3e-16 Score=112.36 Aligned_cols=90 Identities=24% Similarity=0.370 Sum_probs=81.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|.+|++++.||. ||+|+++|.||+|.+||+.|.++|.|.+++|++.++...++.++++++..++...+.+
T Consensus 435 TGD~~~~~~~g~~~~~GR~---dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 511 (563)
T PRK06710 435 TGDVGYMDEDGFFYVKDRK---KDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEE 511 (563)
T ss_pred ccceEEEcCCCcEEEeecc---ccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHH
Confidence 5799999999999999887 9999999999999999999999999999999999988778889999998877667788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 512 ~l~~~~~~~l~~~ 524 (563)
T PRK06710 512 ELNQFARKYLAAY 524 (563)
T ss_pred HHHHHHHHhcccc
Confidence 9999999887753
No 56
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.70 E-value=1.7e-16 Score=111.21 Aligned_cols=90 Identities=24% Similarity=0.420 Sum_probs=81.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. +|+|+++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++...+..
T Consensus 432 TGDl~~~~~dg~l~i~GR~---~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 508 (558)
T PRK12583 432 TGDLATMDEQGYVRIVGRS---KDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEE 508 (558)
T ss_pred ccceEEECCCccEEEEecc---cceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHH
Confidence 4789999999999999887 9999999999999999999999999999999999988777888999998776666788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++.+++++|+.+
T Consensus 509 ~i~~~~~~~L~~~ 521 (558)
T PRK12583 509 ELREFCKARIAHF 521 (558)
T ss_pred HHHHHHHhhcccC
Confidence 9999999988764
No 57
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.70 E-value=2.2e-16 Score=110.90 Aligned_cols=89 Identities=24% Similarity=0.412 Sum_probs=79.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++++|++++.||. ||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++++++.++...+.+
T Consensus 423 TGD~~~~~~~g~l~~~gR~---~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 499 (547)
T PRK13295 423 TGDLARIDADGYIRISGRS---KDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFE 499 (547)
T ss_pred cceEEEEcCCceEEEEecc---CCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999988888889999998877666778
Q ss_pred HHHHHHcC-cCCC
Q psy12100 81 EISSYVEP-KKPV 92 (93)
Q Consensus 81 ~l~~~~~~-~L~~ 92 (93)
++.+++++ .|+.
T Consensus 500 ~l~~~~~~~~l~~ 512 (547)
T PRK13295 500 EMVEFLKAQKVAK 512 (547)
T ss_pred HHHHHHHhccCcc
Confidence 89999885 5654
No 58
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.70 E-value=2e-16 Score=110.73 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=79.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|.+|++++.||. ||+||++|.+|+|.+||+.|.++|+|.++++++.+.. ++..+++++++.++...+.+
T Consensus 410 TGDl~~~~~~g~l~~~GR~---~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~~~~~~ 485 (540)
T PRK06164 410 TGDLGYTRGDGQFVYQTRM---GDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDGASPDEA 485 (540)
T ss_pred cCCeEEEcCCceEEEEeec---CCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999998843 55778899998877667889
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++|+++|+++
T Consensus 486 ~l~~~~~~~l~~~ 498 (540)
T PRK06164 486 GLMAACREALAGF 498 (540)
T ss_pred HHHHHHHhhcccC
Confidence 9999999988763
No 59
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.70 E-value=1.8e-16 Score=108.45 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=72.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
++|.++.|++|+++|.||. ||+||++|+||+|.+||+.|.++|+|.++++.. .++.++++++++++...+
T Consensus 279 tgD~g~~d~~G~l~i~GR~---dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~ 350 (386)
T TIGR02372 279 LQDRLAWDKDGGFTILGRK---DEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAEL 350 (386)
T ss_pred cCceEEEcCCCcEEEeccc---CCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHH
Confidence 4799999999999999887 999999999999999999999999999998852 356788999987654333
Q ss_pred HHHHHHHHcCcCCCC
Q psy12100 79 EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 ~~~l~~~~~~~L~~~ 93 (93)
.++++++++++|+.+
T Consensus 351 ~~~l~~~~~~~L~~~ 365 (386)
T TIGR02372 351 EIELRATAARHLPAP 365 (386)
T ss_pred HHHHHHHHHHhCCCC
Confidence 468899999888763
No 60
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.69 E-value=2.5e-16 Score=110.53 Aligned_cols=89 Identities=25% Similarity=0.336 Sum_probs=81.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.++++++|++++.||. +|+|+++|.+|+|.+||+.+.++|.|.+|++++.+++..++.+.+++++.++...+.+
T Consensus 414 TGDl~~~~~~g~~~~~GR~---~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 490 (542)
T PRK06018 414 TGDVATIDAYGYMRITDRS---KDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATRE 490 (542)
T ss_pred cCCEEEEcCCccEEEEecC---CCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHH
Confidence 4789999999999999887 9999999999999999999999999999999999988778888999998877777788
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
++.++++++|+.
T Consensus 491 ~l~~~~~~~l~~ 502 (542)
T PRK06018 491 EILKYMDGKIAK 502 (542)
T ss_pred HHHHHHHhhCcc
Confidence 999999998875
No 61
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.69 E-value=2.3e-16 Score=110.54 Aligned_cols=89 Identities=26% Similarity=0.383 Sum_probs=79.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|.+|++++.||. ||+|+++|++|+|.+||+.|.++|+|.+++|++.++...++.+.+++++.++...+..
T Consensus 421 TGD~~~~~~~g~l~~~gR~---~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~ 497 (538)
T TIGR03208 421 TGDLAFQDAEGYIRINGRS---KDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFA 497 (538)
T ss_pred ccceEEECCCCcEEEEecc---CceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999988778889999998877667788
Q ss_pred HHHHHHcC-cCCC
Q psy12100 81 EISSYVEP-KKPV 92 (93)
Q Consensus 81 ~l~~~~~~-~L~~ 92 (93)
++.++++. +|+.
T Consensus 498 ~l~~~~~~~~l~~ 510 (538)
T TIGR03208 498 AMVAFLKAQKVAL 510 (538)
T ss_pred HHHHHHHhcchhh
Confidence 89998875 5543
No 62
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.69 E-value=3e-16 Score=109.18 Aligned_cols=90 Identities=26% Similarity=0.379 Sum_probs=80.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.+|.+++|.+|++++.||. ||+||++|.+|+|.+||+.|.++|+|.++++++.++...++.+++++++.++...+.+
T Consensus 383 TGD~~~~~~~g~~~~~GR~---~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 459 (509)
T PRK12406 383 SGDVGYLDADGYLFLCDRK---RDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEA 459 (509)
T ss_pred EccEEEEcCCceEEEeecc---cceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHH
Confidence 3788999999999999887 9999999999999999999999999999999999988777888899988766556788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+++
T Consensus 460 ~l~~~l~~~l~~~ 472 (509)
T PRK12406 460 DIRAQLKARLAGY 472 (509)
T ss_pred HHHHHHHHhcccC
Confidence 9999999888753
No 63
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.69 E-value=2e-16 Score=114.49 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=74.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|+||++++.||. ||+||++|+||+|.|||+.+.+++.+.++++++.+++..++.+++++. +...+.+
T Consensus 595 TGDlg~~d~dG~l~i~GR~---~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~~~ 668 (718)
T PRK08043 595 TGDIVRFDEQGFVQIQGRA---KRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSELTRE 668 (718)
T ss_pred cCCEEEEcCCCcEEEEecC---CCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---CcccCHH
Confidence 4899999999999999887 999999999999999999999998888888888888877888777653 3345678
Q ss_pred HHHHHHcCc-CCCC
Q psy12100 81 EISSYVEPK-KPVL 93 (93)
Q Consensus 81 ~l~~~~~~~-L~~~ 93 (93)
+++++++++ |+.+
T Consensus 669 ~l~~~~~~~~l~~~ 682 (718)
T PRK08043 669 KLQQYAREHGVPEL 682 (718)
T ss_pred HHHHHHHhcCCCcc
Confidence 899999886 7653
No 64
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.69 E-value=2.9e-16 Score=109.01 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=81.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++++|++++.||. ||+|+++|.+|+|.+||+.+.++|+|.++++++.+++..++.+++++++.++...+.+
T Consensus 399 TGDl~~~~~~g~l~i~gR~---~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 475 (523)
T PRK08316 399 SGDLGVMDEEGYITVVDRK---KDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTED 475 (523)
T ss_pred ccceEEEcCCceEEEeccc---ccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999998888899999998876666778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++++++|+.+
T Consensus 476 ~l~~~~~~~l~~~ 488 (523)
T PRK08316 476 ELIAHCRARLAGF 488 (523)
T ss_pred HHHHHHHHhcccC
Confidence 8999998887753
No 65
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.68 E-value=4.1e-16 Score=108.05 Aligned_cols=90 Identities=33% Similarity=0.458 Sum_probs=81.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++.+|++++.||. +|+|+++|.+++|.+||+.|.++|+|.++++++.++...++.+.++++.+++...+..
T Consensus 396 tGDl~~~~~~g~~~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 472 (513)
T PRK07656 396 TGDLGRLDEEGYLYIVDRK---KDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEE 472 (513)
T ss_pred ccceEEEcCCeeEEEEecc---cceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHH
Confidence 4799999999999999887 9999999999999999999999999999999999888778888999998766667788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++++++|+++
T Consensus 473 ~l~~~~~~~l~~~ 485 (513)
T PRK07656 473 ELIAYCREHLAKY 485 (513)
T ss_pred HHHHHHHhhcccc
Confidence 9999999988763
No 66
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.68 E-value=2.3e-16 Score=111.44 Aligned_cols=90 Identities=24% Similarity=0.376 Sum_probs=80.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC---c
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE---L 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~ 77 (93)
+||.+++|++|++++.||. +|+||++|.+|+|.+||+.|.+||.|.+++|++.+++..++.+++++++.++.. .
T Consensus 434 TGD~~~~~~dg~l~~~GR~---~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~ 510 (576)
T PRK05620 434 TGDVGSVTRDGFLTIHDRA---RDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRE 510 (576)
T ss_pred cCceEEEcCCceEEEEech---hhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccc
Confidence 4789999999999999887 999999999999999999999999999999999999888888899988876643 3
Q ss_pred CHHHHHHHHcCcCCCC
Q psy12100 78 TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 ~~~~l~~~~~~~L~~~ 93 (93)
+.++++++++++|+++
T Consensus 511 ~~~~l~~~l~~~L~~~ 526 (576)
T PRK05620 511 TAERLRDQLRDRLPNW 526 (576)
T ss_pred cHHHHHHHHHhhCccc
Confidence 5689999999988863
No 67
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.68 E-value=2e-16 Score=109.60 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=75.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|.+|++++.||. +|+||++|.+|+|.+||+.+.++|+|.+++|++.+++..++.+++++.. ..+.+
T Consensus 365 TGDl~~~d~~g~l~i~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~ 437 (487)
T PRK07638 365 VRDVGYEDEEGFIYIVGRE---KNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQ 437 (487)
T ss_pred cCccEeEcCCCeEEEEecC---CCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999988778888887763 34677
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 438 ~l~~~~~~~l~~~ 450 (487)
T PRK07638 438 QLKSFCLQRLSSF 450 (487)
T ss_pred HHHHHHHHHhhcc
Confidence 8888888877653
No 68
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.68 E-value=1.1e-16 Score=112.23 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=60.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEEC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK 72 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 72 (93)
+||.+++| +|++++.||. ||+||++|+||+|.|||++|.+||+|.+++|++++++..++.+.++++..
T Consensus 400 TGDl~~~~-~G~l~~~GR~---dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~ 467 (525)
T PRK05851 400 TGDLGYLV-DGGLVVCGRA---KELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAE 467 (525)
T ss_pred ccceEEEE-CCEEEEEeec---CCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEE
Confidence 47999997 7999999887 99999999999999999999999999999999999877777776666543
No 69
>PRK08315 AMP-binding domain protein; Validated
Probab=99.68 E-value=4.9e-16 Score=109.05 Aligned_cols=90 Identities=24% Similarity=0.454 Sum_probs=80.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|.+|++++.||. +|+|+++|++|+|.+||+.+.++|+|.+++|++++++..++.+++++++.++...+.+
T Consensus 431 TGD~~~~~~dg~~~~~GR~---d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 507 (559)
T PRK08315 431 TGDLAVMDEEGYVNIVGRI---KDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEE 507 (559)
T ss_pred ccceEEEcCCceEEEEeec---cceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHH
Confidence 4789999999999999888 9999999999999999999999999999999999888777888898888776666788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 508 ~l~~~l~~~l~~~ 520 (559)
T PRK08315 508 DVRDFCRGKIAHY 520 (559)
T ss_pred HHHHHHHhhcccc
Confidence 9999999888753
No 70
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.67 E-value=5.8e-16 Score=108.59 Aligned_cols=90 Identities=26% Similarity=0.384 Sum_probs=79.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-CcCH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-ELTE 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~ 79 (93)
.+|.++++++|++++.||. ||+||++|++|+|.+||+.+.++|.|.++++++++++..++.+++++++.++. ..+.
T Consensus 425 TGD~~~~~~~g~l~i~GR~---~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 501 (541)
T TIGR03205 425 TGDIGYMDTDGYFFLVDRK---KDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSL 501 (541)
T ss_pred cCceEEEcCCceEEEEccc---cCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCH
Confidence 3789999999999999887 99999999999999999999999999999999999887788889999887654 2567
Q ss_pred HHHHHHHcCcCCCC
Q psy12100 80 QEISSYVEPKKPVL 93 (93)
Q Consensus 80 ~~l~~~~~~~L~~~ 93 (93)
+++.++++++|+++
T Consensus 502 ~~l~~~~~~~l~~~ 515 (541)
T TIGR03205 502 DELRAFLAGKLGKH 515 (541)
T ss_pred HHHHHHHHhhcccc
Confidence 88999999988753
No 71
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.67 E-value=4.3e-16 Score=118.71 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=76.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-C---
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-E--- 76 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~--- 76 (93)
+||.+++++||+++|.||. ||+||++|+||+|.|||+.|.+||.|.+++|++.++...+..+++++++.... .
T Consensus 682 TGDlg~~~~dG~l~~~GR~---dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~ 758 (1389)
T TIGR03443 682 TGDLGRYLPDGNVECCGRA---DDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEE 758 (1389)
T ss_pred cCCceeEcCCCCEEEeccc---CCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccc
Confidence 4899999999999999887 99999999999999999999999999999999888877778899999876221 0
Q ss_pred ----------------------cCHHHHHHHHcCcCCCC
Q psy12100 77 ----------------------LTEQEISSYVEPKKPVL 93 (93)
Q Consensus 77 ----------------------~~~~~l~~~~~~~L~~~ 93 (93)
....+++++++++||.+
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y 797 (1389)
T TIGR03443 759 FKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSY 797 (1389)
T ss_pred cccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcc
Confidence 01467899999998864
No 72
>PLN02479 acetate-CoA ligase
Probab=99.67 E-value=3.2e-16 Score=110.64 Aligned_cols=90 Identities=26% Similarity=0.387 Sum_probs=78.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC----
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE---- 76 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---- 76 (93)
+||.+++|++|++++.||. ||+||++|++|+|.+||+.|.++|.|.++++++.++...++.+++++++.++..
T Consensus 434 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 510 (567)
T PLN02479 434 SGDLGVKHPDGYIEIKDRS---KDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDE 510 (567)
T ss_pred cceeEEEcCCccEEEeccc---cceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccch
Confidence 5899999999999999887 999999999999999999999999999999999988777788999998876532
Q ss_pred -cCHHHHHHHHcCcCCCC
Q psy12100 77 -LTEQEISSYVEPKKPVL 93 (93)
Q Consensus 77 -~~~~~l~~~~~~~L~~~ 93 (93)
...+++.++++++|+.+
T Consensus 511 ~~~~~~l~~~~~~~l~~~ 528 (567)
T PLN02479 511 AALAEDIMKFCRERLPAY 528 (567)
T ss_pred hhhHHHHHHHHHhhcccc
Confidence 23468899999888753
No 73
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.67 E-value=5.4e-16 Score=107.23 Aligned_cols=89 Identities=21% Similarity=0.354 Sum_probs=77.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.||.+++|+||++++.||. .|++++++|.+|+|.+||+.|.++|.|.+++|++.++...++.+++++++.. ..+.+
T Consensus 354 TGDlg~~~~dg~l~~~GR~--~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~ 429 (471)
T PRK07787 354 TGDVAVVDPDGMHRIVGRE--STDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD--DVAAD 429 (471)
T ss_pred cCceEEEcCCCCEEEeCCC--CceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC--CCCHH
Confidence 4799999999999999873 1789999999999999999999999999999999988877888999988743 35678
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
++.++++++|+++
T Consensus 430 ~l~~~l~~~l~~~ 442 (471)
T PRK07787 430 ELIDFVAQQLSVH 442 (471)
T ss_pred HHHHHHHhhcccc
Confidence 8999999888753
No 74
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.67 E-value=6.4e-16 Score=107.12 Aligned_cols=89 Identities=28% Similarity=0.366 Sum_probs=80.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.+|.++++++|++++.||. ||+||++|.+|+|.+||+.+.++++|.++++++.++...++.++++++..++...+..
T Consensus 381 TGDl~~~~~~g~~~~~GR~---~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (504)
T PRK07514 381 TGDLGKIDERGYVHIVGRG---KDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEA 457 (504)
T ss_pred ecceEEEcCCccEEEeccc---cceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHH
Confidence 3789999999999999887 9999999999999999999999999999999999988778889999998876666788
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
+++++++++|++
T Consensus 458 ~l~~~~~~~l~~ 469 (504)
T PRK07514 458 AILAALKGRLAR 469 (504)
T ss_pred HHHHHHHhhccc
Confidence 899999988765
No 75
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.67 E-value=3.2e-16 Score=112.74 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=59.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEEC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK 72 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 72 (93)
+||.|++|+||+++|.||. ||+||+ +|+||+|.+||++|.+||.|.+|+|+|.+. ++.++++|+++
T Consensus 497 TGDlg~~d~dG~l~i~GR~---kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~ 563 (660)
T PLN02861 497 TGDIGEWQPNGAMKIIDRK---KNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPD 563 (660)
T ss_pred cCceEEECCCCcEEEEecc---ccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcC
Confidence 5899999999999999887 999997 799999999999999999999999999762 35688888875
No 76
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.67 E-value=6.1e-16 Score=108.55 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=77.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. +|+|+++|++|+|.+||..|.++|+|.++++++.++...++.+++++++.++ .+..
T Consensus 413 TGDl~~~d~~G~l~~~gR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~~ 487 (536)
T PRK10946 413 SGDLVSIDPDGYITVVGRE---KDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKAV 487 (536)
T ss_pred cCceEEECCCCcEEEeccc---cceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCHH
Confidence 4799999999999999887 9999999999999999999999999999999999988778888999887754 6778
Q ss_pred HHHHHHcCc-CCC
Q psy12100 81 EISSYVEPK-KPV 92 (93)
Q Consensus 81 ~l~~~~~~~-L~~ 92 (93)
+++++++++ |+.
T Consensus 488 ~l~~~~~~~~l~~ 500 (536)
T PRK10946 488 QLRRFLREQGIAE 500 (536)
T ss_pred HHHHHHHhCCccc
Confidence 899999875 664
No 77
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.66 E-value=2.8e-16 Score=112.70 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=60.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 73 (93)
+||.|++|+||+++|.||. ||+||+ +|+||+|.+||++|.+||.|.+|+|+|. ..++.++|+|++++
T Consensus 491 TGDlg~~d~dG~l~i~GR~---kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~ 558 (651)
T PLN02736 491 TGDIGLWLPGGRLKIIDRK---KNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDP 558 (651)
T ss_pred ccceEEEcCCCcEEEEEec---hhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCH
Confidence 5899999999999999887 999997 7999999999999999999999999983 34678999999865
No 78
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.66 E-value=9.1e-16 Score=108.18 Aligned_cols=89 Identities=25% Similarity=0.382 Sum_probs=78.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++.|++|++++.||. ||+||++|++|+|.+||+.|.++|.|.++++++.++...++.+.+++++.+. ..+.+
T Consensus 445 TGD~g~~~~~G~l~i~GR~---~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~ 520 (562)
T PRK12492 445 TGDIAVIDPDGFVRIVDRK---KDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-GLSVE 520 (562)
T ss_pred cCcEEEECCCCeEEEeccc---CCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-CCCHH
Confidence 5899999999999999887 9999999999999999999999999999999999888778888888887543 35678
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 521 ~i~~~~~~~l~~~ 533 (562)
T PRK12492 521 ELKAYCKENFTGY 533 (562)
T ss_pred HHHHHHHHhcccc
Confidence 8999999888753
No 79
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.66 E-value=8.9e-16 Score=107.13 Aligned_cols=89 Identities=26% Similarity=0.359 Sum_probs=80.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.+|.++.+++|++++.||. +++|+++|.+|+|.+||+.|.++|+|.++++++.+++..++.+++++++.+....+.+
T Consensus 397 TGDl~~~~~~g~~~~~GR~---~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 473 (524)
T PRK06188 397 TGDVAREDEDGFYYIVDRK---KDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAA 473 (524)
T ss_pred ecceEEEcCCccEEEEecc---ccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHH
Confidence 4788999999999999887 9999999999999999999999999999999999888778889999998876666778
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
+++++++++++.
T Consensus 474 ~l~~~~~~~l~~ 485 (524)
T PRK06188 474 ELQAHVKERKGS 485 (524)
T ss_pred HHHHHHHHhccc
Confidence 899999888765
No 80
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.66 E-value=4.2e-16 Score=111.01 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=69.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc-CCCcce--EEEEeeeCCCCCceEEEEEEECCCCC-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ-IAGVAD--VAVVGVPDTLSGEVPKAFVVKKPGVE- 76 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~~- 76 (93)
+||.|+.+ +|+++|.||. ||+||++|+||+|.|||+.|.+ ||.|.+ +++++++++. ++.+++++++.++..
T Consensus 480 TGDlg~~~-dG~l~i~GR~---~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~ 554 (612)
T PRK12476 480 TGDLGVYL-DGELYITGRI---ADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSR 554 (612)
T ss_pred ccccceeE-CCEEEEEecc---CcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCccc
Confidence 47888875 9999999888 9999999999999999999985 899998 6778888776 788899998876642
Q ss_pred cCHHHHHHHHcCcCC
Q psy12100 77 LTEQEISSYVEPKKP 91 (93)
Q Consensus 77 ~~~~~l~~~~~~~L~ 91 (93)
.+.++|.++++++|.
T Consensus 555 ~~~~~l~~~~~~~l~ 569 (612)
T PRK12476 555 ADPAPAIDAIRAAVS 569 (612)
T ss_pred ccHHHHHHHHHHHHH
Confidence 456666666665543
No 81
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.65 E-value=9e-16 Score=107.87 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=64.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
+||.+++|++|++++.||. ||+||++|++|+|.|||+.|..||+|.+++|++.++...++.++++++..+.
T Consensus 406 TGDlg~~d~~g~l~~~GR~---~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~ 476 (540)
T PRK05857 406 TGDLLERREDGFFYIKGRS---SEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE 476 (540)
T ss_pred ccceEEEcCCceEEEeccc---cccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCC
Confidence 5899999999999999887 9999999999999999999999999999999999987777778787776543
No 82
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.65 E-value=8.3e-16 Score=108.09 Aligned_cols=88 Identities=26% Similarity=0.382 Sum_probs=76.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.+++|++|++++.||. +|+|+++|.+|+|.+||+.|..+|+|.++++++.++...++.+.++++.. +...+..
T Consensus 441 TGD~~~~~~~g~l~i~GR~---~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~~~~ 516 (560)
T PRK08751 441 TGDIARMDEQGFVYIVDRK---KDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALTAE 516 (560)
T ss_pred ccceEEEcCCceEEEEeec---hhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCCCCHH
Confidence 5799999999999999887 99999999999999999999999999999999999887777777777654 3445678
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
+++++++++|+.
T Consensus 517 ~l~~~~~~~l~~ 528 (560)
T PRK08751 517 DVKAHARANLTG 528 (560)
T ss_pred HHHHHHHHhhhh
Confidence 899999888765
No 83
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.65 E-value=1.7e-15 Score=105.57 Aligned_cols=90 Identities=24% Similarity=0.291 Sum_probs=78.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL--- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 77 (93)
+||.++++++|++++.||. ||++|++|.+|+|.+||+++.+||.|.++++++.++...++.+++++++.++...
T Consensus 386 TGD~g~~~~~g~l~~~gR~---~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 462 (511)
T PRK13391 386 VGDIGYVDEDGYLYLTDRA---AFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPA 462 (511)
T ss_pred cCCEEEECCCccEEEeccC---CCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccc
Confidence 4789999999999999887 9999999999999999999999999999999999988888888888887654332
Q ss_pred CHHHHHHHHcCcCCCC
Q psy12100 78 TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 ~~~~l~~~~~~~L~~~ 93 (93)
..++++++++++|+.+
T Consensus 463 ~~~~l~~~~~~~l~~~ 478 (511)
T PRK13391 463 LAAELIAFCRQRLSRQ 478 (511)
T ss_pred hHHHHHHHHHhhcccC
Confidence 2478999999988753
No 84
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.64 E-value=1.7e-15 Score=105.17 Aligned_cols=89 Identities=27% Similarity=0.359 Sum_probs=77.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCH-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE- 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~- 79 (93)
.||.+++|++|++++.||. ||+||++|.+|+|.+||..|.++|+|.++++++..++..++.+.+++++.++...+.
T Consensus 373 TGD~~~~~~~g~~~~~GR~---~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 449 (502)
T PRK08276 373 VGDVGYLDEDGYLYLTDRK---SDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDA 449 (502)
T ss_pred ecceEEEcCCcCEEEeccC---cceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChh
Confidence 4799999999999999887 999999999999999999999999999999999988888889999999876543332
Q ss_pred --HHHHHHHcCcCCC
Q psy12100 80 --QEISSYVEPKKPV 92 (93)
Q Consensus 80 --~~l~~~~~~~L~~ 92 (93)
+++.++++++|+.
T Consensus 450 ~~~~i~~~~~~~l~~ 464 (502)
T PRK08276 450 LAAELIAWLRGRLAH 464 (502)
T ss_pred hHHHHHHHHHhhccC
Confidence 4788888888765
No 85
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.64 E-value=3.1e-15 Score=105.05 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=78.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-CcCH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV-ELTE 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~ 79 (93)
+||.++.+++|++++.||. ||+||++|.+|+|.+||+.|.++|.|.++++++.++...++.+++++++.+.. ....
T Consensus 403 TGDl~~~~~~g~~~i~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 479 (542)
T PRK07786 403 SGDLVRQDEEGYVWVVDRK---KDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTL 479 (542)
T ss_pred ccceEEEcCCceEEEEecc---cceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCH
Confidence 4799999999999999887 99999999999999999999999999999999998877778888888877543 3567
Q ss_pred HHHHHHHcCcCCCC
Q psy12100 80 QEISSYVEPKKPVL 93 (93)
Q Consensus 80 ~~l~~~~~~~L~~~ 93 (93)
.++.++++++|+++
T Consensus 480 ~~l~~~l~~~l~~~ 493 (542)
T PRK07786 480 EDLAEFLTDRLARY 493 (542)
T ss_pred HHHHHHHHhhccCC
Confidence 88999999888753
No 86
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.64 E-value=3.1e-15 Score=103.65 Aligned_cols=89 Identities=28% Similarity=0.448 Sum_probs=80.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.+|.+.++.+|++++.||. +|++|++|.+++|.+||+.+.++|+|.++++++.+++..++.+++++++.++...+..
T Consensus 399 tGD~~~~~~~g~~~~~GR~---~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 475 (521)
T PRK06187 399 TGDVGYIDEDGYLYITDRI---KDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAK 475 (521)
T ss_pred ccceEEEcCCCCEEEeecc---cceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHH
Confidence 4789999999999999887 9999999999999999999999999999999999888778899999998877667788
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
+++++++++|+.
T Consensus 476 ~l~~~l~~~l~~ 487 (521)
T PRK06187 476 ELRAFLRGRLAK 487 (521)
T ss_pred HHHHHHHHhccC
Confidence 999999888875
No 87
>PRK12316 peptide synthase; Provisional
Probab=99.63 E-value=1.7e-15 Score=124.92 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=80.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++.||++++.||. ||+||++|+||+|.|||+.|.++|+|.+++|++.++. .++.+++++++.++...+.+
T Consensus 2385 TGDl~~~~~dG~l~~~GR~---d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~~~ 2460 (5163)
T PRK12316 2385 TGDLARYRADGVVEYLGRI---DHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAEDLLA 2460 (5163)
T ss_pred cccEEEEcCCCcEEEecCC---CCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCccCHH
Confidence 5899999999999999887 9999999999999999999999999999999988766 67889999998877667789
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++||.+
T Consensus 2461 ~l~~~l~~~Lp~~ 2473 (5163)
T PRK12316 2461 ELRAWLAARLPAY 2473 (5163)
T ss_pred HHHHHHHhhCchh
Confidence 9999999999864
No 88
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.63 E-value=3.2e-15 Score=103.64 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=72.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeee-CCCCCceEEEEEEECCCCCcC-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVP-DTLSGEVPKAFVVKKPGVELT- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~- 78 (93)
+||.+++|++ ++++.||. +|+|+++|.||+|.+||+.+.++|.|.+++++++. .....+.+++++++.......
T Consensus 378 TGDlg~~~~~-~l~i~GR~---~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~ 453 (502)
T TIGR01734 378 TGDAGTITDG-QLFYQGRL---DFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKE 453 (502)
T ss_pred CCCEEEEECC-EEEEeccc---cCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccc
Confidence 5899999977 99999887 99999999999999999999999999999999976 444567788888876543221
Q ss_pred ---HHHHHHHHcCcCCC
Q psy12100 79 ---EQEISSYVEPKKPV 92 (93)
Q Consensus 79 ---~~~l~~~~~~~L~~ 92 (93)
.++++++++++|++
T Consensus 454 ~~~~~~i~~~~~~~l~~ 470 (502)
T TIGR01734 454 FQLTKAIKKELKKSLPA 470 (502)
T ss_pred hhhHHHHHHHHhhhChh
Confidence 26788888888764
No 89
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=99.63 E-value=2.1e-15 Score=106.15 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=65.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcce------EEEEeeeCCCCCceEEEEEEECCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVAD------VAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||++|.+||+|.+ +++++.++. ...++++++..
T Consensus 414 TGD~g~~d~~G~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~~-- 486 (539)
T PRK06334 414 TGDLGYVDRHGELFLKGRL---SRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTFP-- 486 (539)
T ss_pred CCCEEEECCCCeEEEEecc---CCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEecc--
Confidence 4899999999999999887 9999999999999999999999999987 677777643 23444554432
Q ss_pred CCcCHHHHHHHHcCc-CC
Q psy12100 75 VELTEQEISSYVEPK-KP 91 (93)
Q Consensus 75 ~~~~~~~l~~~~~~~-L~ 91 (93)
.+.++++++++++ ++
T Consensus 487 --~~~~~~~~~l~~~~~~ 502 (539)
T PRK06334 487 --TSISEVNDILKNSKTS 502 (539)
T ss_pred --CChHHHHHHHHhcCCc
Confidence 3567888888775 44
No 90
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.63 E-value=3.4e-15 Score=105.08 Aligned_cols=88 Identities=31% Similarity=0.460 Sum_probs=77.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.++++.+|++++.||. +|+|+++|++|+|.+||+.+.++|+|.++++++.++...++.++++++... ...+.+
T Consensus 439 TGDl~~~~~~g~~~~~GR~---~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~~~~~ 514 (557)
T PRK07059 439 TGDVGVMDERGYTKIVDRK---KDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PALTEE 514 (557)
T ss_pred cCcEEEEcCCCcEEEeccc---ccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CCCCHH
Confidence 5899999999999999887 999999999999999999999999999999999998877888888888654 345678
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
++++++.++|+.
T Consensus 515 ~l~~~~~~~l~~ 526 (557)
T PRK07059 515 DVKAFCKERLTN 526 (557)
T ss_pred HHHHHHHHhccc
Confidence 899998888765
No 91
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=5.1e-16 Score=105.82 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=76.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.||...+|.+||+.++||. ||+|+.+|+||..+|||+.|..||.|.+|++++.+++..|++.|++++.++.. ....
T Consensus 418 sGD~V~~~~dGyl~V~GR~---KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~-~~~~ 493 (542)
T COG1021 418 SGDLVRRDPDGYLVVEGRV---KDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP-LRAA 493 (542)
T ss_pred cCceeEecCCceEEEEeee---hhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-CCHH
Confidence 3788899999999999998 99999999999999999999999999999999999999999999999988553 6778
Q ss_pred HHHHHHcC
Q psy12100 81 EISSYVEP 88 (93)
Q Consensus 81 ~l~~~~~~ 88 (93)
+|++++.+
T Consensus 494 qlr~~L~~ 501 (542)
T COG1021 494 QLRRFLRE 501 (542)
T ss_pred HHHHHHHH
Confidence 88888765
No 92
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.62 E-value=3.9e-15 Score=102.76 Aligned_cols=88 Identities=31% Similarity=0.457 Sum_probs=76.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++++++|++++.||. ||++|++|.+|+|.+||+.+.++|+|.++++++.+++..+..++++++.. ...+..
T Consensus 364 tGDl~~~~~~g~l~~~GR~---~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~ 438 (483)
T PRK03640 364 TGDIGYLDEEGFLYVLDRR---SDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEE 438 (483)
T ss_pred ccceEEEcCCCCEEEeecc---cCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHH
Confidence 4799999999999999887 99999999999999999999999999999999988877777788877754 345678
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 439 ~l~~~~~~~l~~~ 451 (483)
T PRK03640 439 ELRHFCEEKLAKY 451 (483)
T ss_pred HHHHHHHHhccCC
Confidence 8999999888754
No 93
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.61 E-value=4.3e-15 Score=112.44 Aligned_cols=90 Identities=8% Similarity=0.110 Sum_probs=75.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeee------CCCCCceEEEEEEECCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVP------DTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~------~~~~~~~~~~~v~~~~~ 74 (93)
.||.++++++|++++.||. |++||++|+||+|.|||+.|.++|+|.+++|+++. ..+....++++++...+
T Consensus 841 TGDl~~~~~~G~l~~~GR~---d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~ 917 (1296)
T PRK10252 841 TGDVARWLDDGAVEYLGRS---DDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG 917 (1296)
T ss_pred cCceEEEcCCCcEEEeccc---CCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCC
Confidence 4899999999999999887 99999999999999999999999999999887653 11122468899988766
Q ss_pred CCcCHHHHHHHHcCcCCCC
Q psy12100 75 VELTEQEISSYVEPKKPVL 93 (93)
Q Consensus 75 ~~~~~~~l~~~~~~~L~~~ 93 (93)
...+..+++++++++||.+
T Consensus 918 ~~~~~~~l~~~l~~~Lp~~ 936 (1296)
T PRK10252 918 LPLDTSALQAQLRERLPPH 936 (1296)
T ss_pred CCCCHHHHHHHHHhhCchh
Confidence 5567889999999998864
No 94
>PLN02614 long-chain acyl-CoA synthetase
Probab=99.61 E-value=3e-15 Score=107.93 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=59.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 73 (93)
+||.|++|+||+++|.||. ||+||+ +|+||+|.+||++|.+||.|.+++|+|.... ..++|+|+++.
T Consensus 500 TGDlg~~d~dG~l~i~gR~---kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~ 567 (666)
T PLN02614 500 TGDVGEWQPNGSMKIIDRK---KNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQ 567 (666)
T ss_pred cceEEEEcCCCCEEEEEcc---hhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCH
Confidence 5899999999999999887 999996 7999999999999999999999999997532 24888888753
No 95
>PRK12467 peptide synthase; Provisional
Probab=99.61 E-value=3.2e-15 Score=121.77 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=78.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++++||++++.||. |++||++|+||+|.|||+.|.++|+|.+|+|++... ..++.+++++++........+
T Consensus 3475 TGDl~~~~~dG~l~~~GR~---d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~~~~ 3550 (3956)
T PRK12467 3475 TGDLARYRADGVIEYLGRI---DHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGDWRE 3550 (3956)
T ss_pred cchhheecCCCcEEEeccc---cceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcccHH
Confidence 4899999999999999887 999999999999999999999999999999998754 456789999998765556678
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++||.+
T Consensus 3551 ~l~~~l~~~Lp~y 3563 (3956)
T PRK12467 3551 TLRDHLAASLPDY 3563 (3956)
T ss_pred HHHHHHhccCChh
Confidence 9999999999864
No 96
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.61 E-value=4.9e-15 Score=101.05 Aligned_cols=87 Identities=21% Similarity=0.392 Sum_probs=76.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
.+|.+..|.+|++++.||. +|+||++|.+|+|.+||+.|.++|.|.++++++.++...+..+.+++++.++ .+..
T Consensus 324 TGD~~~~~~dg~~~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~ 398 (436)
T TIGR01923 324 TGDIGELDGEGFLYVLGRR---DDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--ISQA 398 (436)
T ss_pred ccceEEEcCCCCEEEeccc---cCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CCHH
Confidence 4789999999999999887 9999999999999999999999999999999998887667788888887753 5677
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
++.+++++.|+.
T Consensus 399 ~l~~~l~~~l~~ 410 (436)
T TIGR01923 399 KLIAYLTEKLAK 410 (436)
T ss_pred HHHHHHHHhhhC
Confidence 888888888765
No 97
>PRK12316 peptide synthase; Provisional
Probab=99.61 E-value=3.2e-15 Score=123.33 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=78.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++.|.||++++.||. ||+||++|+||+|.|||++|.+||+|.+|+|++.+ ++.+++++++.++.....+
T Consensus 890 TGDl~~~~~dG~l~~~GR~---d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~~~ 962 (5163)
T PRK12316 890 TGDLARYRADGVIEYAGRI---DHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWRE 962 (5163)
T ss_pred cCccEEECCCCCEEeeccc---CCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCCHH
Confidence 4899999999999999887 99999999999999999999999999999999885 5679999998776666788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++||.+
T Consensus 963 ~l~~~l~~~Lp~y 975 (5163)
T PRK12316 963 ALKAHLAASLPEY 975 (5163)
T ss_pred HHHHHHHhhCCCc
Confidence 9999999999864
No 98
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.61 E-value=2.9e-15 Score=106.06 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=70.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcc--eEEEEeeeCCCCCceEEEEEEECCCCCcC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVA--DVAVVGVPDTLSGEVPKAFVVKKPGVELT 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (93)
+||.+++ ++|++++.||. ||+||++|++|+|.|||+.|.+||+|. ++++++++++. +..++++++..++...+
T Consensus 443 TGDlg~~-~~G~l~~~GR~---dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~ 517 (579)
T PRK09192 443 TGDLGYL-LDGYLYITGRA---KDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEER 517 (579)
T ss_pred ccceeeE-ECCEEEEEecc---ccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHH
Confidence 4788999 89999999887 999999999999999999999999998 89999998875 44778887766554445
Q ss_pred HHHHHHHHcCcC
Q psy12100 79 EQEISSYVEPKK 90 (93)
Q Consensus 79 ~~~l~~~~~~~L 90 (93)
.+++.+++++.+
T Consensus 518 ~~~l~~~~~~~l 529 (579)
T PRK09192 518 RGQLIHALAALV 529 (579)
T ss_pred HHHHHHHHHHHH
Confidence 667777776654
No 99
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.61 E-value=8.7e-15 Score=103.05 Aligned_cols=88 Identities=28% Similarity=0.382 Sum_probs=76.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
++|.++++++|++++.||. +|+|+++|.+++|.+||+.|.++|+|.++++++.++...++.++++++..+ ...+.+
T Consensus 436 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~~~ 511 (560)
T PRK08974 436 TGDIAVMDEEGFLRIVDRK---KDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSLTEE 511 (560)
T ss_pred cCCEEEEcCCceEEEEecc---cceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCCCHH
Confidence 5789999999999999887 999999999999999999999999999999999998877777777776543 334677
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
++++++.++|+.
T Consensus 512 ~l~~~l~~~l~~ 523 (560)
T PRK08974 512 ELITHCRRHLTG 523 (560)
T ss_pred HHHHHHHhhccc
Confidence 888888888765
No 100
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.61 E-value=5e-15 Score=111.20 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=73.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|+||++++.||. ||+||++|+||+|.|||+.+.++|.+.+++|++++++..++.+++++. ..+.+.+
T Consensus 1014 TGDl~~~d~dG~l~~~GR~---~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~ 1087 (1140)
T PRK06814 1014 TGDIVTIDEEGFITIKGRA---KRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATRA 1087 (1140)
T ss_pred cCCEEEECCCCeEEEEecc---cCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCHH
Confidence 4899999999999999887 999999999999999999999999999999999998888887766553 2345677
Q ss_pred HHHHHHcCc-CCC
Q psy12100 81 EISSYVEPK-KPV 92 (93)
Q Consensus 81 ~l~~~~~~~-L~~ 92 (93)
++.++++++ |+.
T Consensus 1088 ~l~~~~~~~~l~~ 1100 (1140)
T PRK06814 1088 AFLAHAKAAGASE 1100 (1140)
T ss_pred HHHHHHHHcCCCc
Confidence 888888764 654
No 101
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.59 E-value=1.4e-14 Score=101.70 Aligned_cols=89 Identities=27% Similarity=0.368 Sum_probs=76.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC-CCCcCH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP-GVELTE 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~ 79 (93)
.+|.+++|++|++++.||. +|+|+++|.+|+|.+||+.|.++|+|.++++++.+++..++.+++++++.+ +...+.
T Consensus 414 TGDl~~~~~~g~l~i~GR~---~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 490 (547)
T PRK06087 414 SGDLCRMDEAGYIKITGRK---KDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTL 490 (547)
T ss_pred cCceEEECCCCCEEEEecc---hhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCH
Confidence 4799999999999999887 999999999999999999999999999999999998888889999999875 334567
Q ss_pred HHHHHHHc-CcCCC
Q psy12100 80 QEISSYVE-PKKPV 92 (93)
Q Consensus 80 ~~l~~~~~-~~L~~ 92 (93)
+++.+++. +.|+.
T Consensus 491 ~~~~~~~~~~~l~~ 504 (547)
T PRK06087 491 EEVVAFFSRKRVAK 504 (547)
T ss_pred HHHHHHHHhccccc
Confidence 78888765 45554
No 102
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.58 E-value=2.2e-14 Score=99.88 Aligned_cols=89 Identities=28% Similarity=0.340 Sum_probs=76.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC---c
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE---L 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~ 77 (93)
.||.++++++|++++.||. ||+|+++|.+++|.+||+.|.++|+|.++++++.++....+.+.+++++.+... .
T Consensus 388 TGD~~~~~~~g~~~~~gR~---~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 464 (508)
T TIGR02262 388 SGDKYVRNDDGSYTYAGRT---DDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTA 464 (508)
T ss_pred ccceEEEcCCccEEEeccc---cceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccc
Confidence 4788999999999999887 999999999999999999999999999999999888777788888888766532 3
Q ss_pred CHHHHHHHHcCcCCC
Q psy12100 78 TEQEISSYVEPKKPV 92 (93)
Q Consensus 78 ~~~~l~~~~~~~L~~ 92 (93)
..+++.++++++|++
T Consensus 465 ~~~~i~~~~~~~l~~ 479 (508)
T TIGR02262 465 LETELKEHVKDRLAP 479 (508)
T ss_pred cHHHHHHHHHHhccc
Confidence 357888899888775
No 103
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.57 E-value=2.4e-14 Score=99.11 Aligned_cols=88 Identities=15% Similarity=0.037 Sum_probs=73.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC-c--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE-L-- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~-- 77 (93)
+||.+++ .+|++++.||. ||+|+++|.+++|.+||+.+.++|+|.++++++.++...++.+++++++.++.. .
T Consensus 380 tGD~~~~-~~g~~~~~GR~---~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (503)
T PRK04813 380 TGDAGYL-EDGLLFYQGRI---DFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREF 455 (503)
T ss_pred CCceEEe-eCCeEEEeccc---cceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccc
Confidence 4788999 89999999887 999999999999999999999999999999999877766778888888765421 1
Q ss_pred -CHHHHHHHHcCcCCC
Q psy12100 78 -TEQEISSYVEPKKPV 92 (93)
Q Consensus 78 -~~~~l~~~~~~~L~~ 92 (93)
-.++++++++++|+.
T Consensus 456 ~~~~~l~~~~~~~l~~ 471 (503)
T PRK04813 456 ELTKAIKKELKERLME 471 (503)
T ss_pred hhHHHHHHHHHhhCcc
Confidence 124688888877764
No 104
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.56 E-value=2e-14 Score=107.60 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=73.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCC--cceEEEEeeeCCCCCceEEEEEEECCCCCcC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAG--VADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~--v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (93)
.||.+++|+||++++.||. ||+||++|++|+|.|||+.|.+||+ +.++++++++++..++.++++++.. ..+
T Consensus 1023 TGD~~~~~~~g~l~~~gR~---~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~---~~~ 1096 (1146)
T PRK08633 1023 TGDKGHLDEDGFLTITDRY---SRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG---AED 1096 (1146)
T ss_pred CCCEEEEcCCceEEEEecc---cchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---ccC
Confidence 4899999999999999887 9999999999999999999999984 5679999999988888888888752 345
Q ss_pred HHHHHHHHcC-cCCC
Q psy12100 79 EQEISSYVEP-KKPV 92 (93)
Q Consensus 79 ~~~l~~~~~~-~L~~ 92 (93)
.+++++++.+ ++++
T Consensus 1097 ~~~l~~~~~~~~l~~ 1111 (1146)
T PRK08633 1097 VEELKRAIKESGLPN 1111 (1146)
T ss_pred HHHHHHHHHhcCCCc
Confidence 6788888764 4654
No 105
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.55 E-value=1.8e-14 Score=101.77 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=60.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV 75 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 75 (93)
+||.+++| +|++++.||. ||+||++|+||+|.|||+.|.+||.+ +++++++++. .++.+++++++++..
T Consensus 441 TGDl~~~~-~G~l~~~GR~---~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~ 509 (578)
T PRK05850 441 TGDLGFIS-EGELFIVGRI---KDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRG 509 (578)
T ss_pred ccceeeEE-CCEEEEEccc---ccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEecccc
Confidence 47899998 8999999887 99999999999999999999999986 5788888876 678899999887654
No 106
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.54 E-value=4.3e-14 Score=102.45 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=58.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 73 (93)
+||.|++|+||+++|.||. ||+||+ +|+||+|.+||++|.+||.|.+++|+|.+.. ..++++|++++
T Consensus 539 TGDig~~d~dG~l~i~gR~---kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~ 606 (696)
T PLN02387 539 TGDIGQFHPDGCLEIIDRK---KDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVVPSQ 606 (696)
T ss_pred cCceEEECCCCcEEEEEcc---cceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEEeCH
Confidence 5899999999999999887 999998 6999999999999999999999999986532 35778888753
No 107
>PRK05691 peptide synthase; Validated
Probab=99.53 E-value=6.5e-14 Score=114.87 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=78.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++.++||++++.||. |++||++|++|+|.|||+.|.++|+|.+++|++.... .+..++++++...+...+.+
T Consensus 1509 TGDl~~~~~dG~l~~~GR~---d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~~~ 1584 (4334)
T PRK05691 1509 TGDRARWNADGALEYLGRL---DQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAEAE 1584 (4334)
T ss_pred ccceEEECCCCCEEEeccc---CcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCCHH
Confidence 5899999999999999887 9999999999999999999999999999999866554 45778899888766666778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++||.+
T Consensus 1585 ~l~~~l~~~Lp~y 1597 (4334)
T PRK05691 1585 RLKAALAAELPEY 1597 (4334)
T ss_pred HHHHHHHHhCccc
Confidence 9999999999864
No 108
>PRK12467 peptide synthase; Provisional
Probab=99.53 E-value=5.8e-14 Score=114.67 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=75.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL--- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 77 (93)
+||.++.+.||++++.||. ||+||++|++|+|.|||+.|.++|+|.+|+|++.+ ...+..++++++.......
T Consensus 1958 TGDl~~~~~dG~l~~~GR~---D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~ 2033 (3956)
T PRK12467 1958 TGDLARYRADGVIEYLGRI---DHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDD 2033 (3956)
T ss_pred ccceEEECCCCCEEEeccc---CceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCccccccc
Confidence 4899999999999999887 99999999999999999999999999999999886 3456788999987644221
Q ss_pred -----CHHHHHHHHcCcCCCC
Q psy12100 78 -----TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 -----~~~~l~~~~~~~L~~~ 93 (93)
...+++++++++||.+
T Consensus 2034 ~~~~~~~~~l~~~l~~~Lp~y 2054 (3956)
T PRK12467 2034 EAQVALRAILKNHLKASLPEY 2054 (3956)
T ss_pred ccccccHHHHHHHHHhhCchh
Confidence 3468999999988864
No 109
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=99.52 E-value=6.9e-14 Score=100.89 Aligned_cols=67 Identities=19% Similarity=0.078 Sum_probs=59.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 73 (93)
+||.+++|++|+++|+||. ||+||+ +|++|+|.+||+.+.++|.|.+++|+|.. .+..++|+|++++
T Consensus 497 TGDig~~d~dG~l~i~gR~---kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~ 564 (660)
T PLN02430 497 TGDIGEILPNGVLKIIDRK---KNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNE 564 (660)
T ss_pred ccceEEECCCCcEEEEEcc---cccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCH
Confidence 4899999999999999887 999997 79999999999999999999999999832 3467889998764
No 110
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=99.52 E-value=6.4e-14 Score=102.43 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=58.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 73 (93)
+||.+.+|++|+++|+||. ||+||+ +|+||+|.+||+++.+||.|.+|+|+|... ...++|+|+++.
T Consensus 574 TGDig~~d~dG~l~i~gR~---kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~---~~~~~Alvv~d~ 641 (746)
T PTZ00342 574 TGDIVQINKNGSLTFLDRS---KGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDS---MDGPLAIISVDK 641 (746)
T ss_pred CCcEEEECCCCeEEEEccC---CCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCC---ccccEEEEECCH
Confidence 5899999999999999887 999995 899999999999999999999999998632 235788888653
No 111
>PRK05691 peptide synthase; Validated
Probab=99.51 E-value=1.1e-13 Score=113.63 Aligned_cols=89 Identities=11% Similarity=0.186 Sum_probs=75.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC-----
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV----- 75 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----- 75 (93)
+||.++.+.||++++.||. ||+||++|++|+|.|||+.|.++|+|.+|+|++...+ .+..++++++.....
T Consensus 2572 TGDl~~~~~dG~l~~~GR~---d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~~-~~~~lva~vv~~~~~~~~~~ 2647 (4334)
T PRK05691 2572 TGDLVRLRADGLVEYVGRI---DHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDTP-SGKQLAGYLVSAVAGQDDEA 2647 (4334)
T ss_pred ccceEEEcCCCCEEEeecc---cCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeCC-CCcEEEEEEEeccccccccc
Confidence 5899999999999999887 9999999999999999999999999999999988543 567788888864321
Q ss_pred -CcCHHHHHHHHcCcCCCC
Q psy12100 76 -ELTEQEISSYVEPKKPVL 93 (93)
Q Consensus 76 -~~~~~~l~~~~~~~L~~~ 93 (93)
....++++++++++||.+
T Consensus 2648 ~~~~~~~l~~~l~~~Lp~y 2666 (4334)
T PRK05691 2648 QAALREALKAHLKQQLPDY 2666 (4334)
T ss_pred ccccHHHHHHHHHhhCccc
Confidence 223578999999999864
No 112
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.43 E-value=7.2e-13 Score=93.05 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=56.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeC--CCCCceEEEEEEEC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPD--TLSGEVPKAFVVKK 72 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~--~~~~~~~~~~v~~~ 72 (93)
++|.++.|++|++++.||. ||+||++|.+|+|.+||+.|.++|+|.+++++++.. ...++..++++...
T Consensus 418 TGDl~~~~~~g~l~~~GR~---~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~ 488 (545)
T PRK07768 418 TGDLGYLTEEGEVVVCGRV---KDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESN 488 (545)
T ss_pred ccceEEEecCCEEEEEccc---cceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEec
Confidence 4789999999999999887 999999999999999999999999999988777653 33345555555444
No 113
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=99.40 E-value=1.5e-13 Score=98.08 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=64.4
Q ss_pred Cccccee----ccCCeEEEeeeeccccceeec-CCeeec--hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100 1 MEEEKAL----SVAPYKKLAGGVKFLETIPRN-PAGKVS--PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73 (93)
Q Consensus 1 ~~~~~~~----d~~g~~~~~GR~gR~~d~I~~-~G~~v~--p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 73 (93)
+||.+++ |++|+++|.||. ||+||+ +|++++ |.|+|..+.+||.|.+++|+|.+++ .+.++|++++
T Consensus 444 TGDlg~~~~~~d~~g~l~i~GR~---~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~ 516 (614)
T PRK08180 444 SGDAVRFVDPADPERGLMFDGRI---AEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNL 516 (614)
T ss_pred ccceEEecCCcCCCCceEEecch---hhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCH
Confidence 5899998 568999999887 888885 798666 8899999999999999999998765 4678888765
Q ss_pred CC---------------CcCHHHHHHHHcCcCC
Q psy12100 74 GV---------------ELTEQEISSYVEPKKP 91 (93)
Q Consensus 74 ~~---------------~~~~~~l~~~~~~~L~ 91 (93)
+. ..+.++|++++++.|+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 549 (614)
T PRK08180 517 DACRRLAGLLADASLAEVLAHPAVRAAFRERLA 549 (614)
T ss_pred HHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHH
Confidence 41 1233567777766543
No 114
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=99.38 E-value=2e-12 Score=93.87 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=55.2
Q ss_pred CcccceeccCCeEEEeeeeccccceee-cCCeeechHHHHHHhhcCCCcceE--EEEeeeCCCCCceEEEEEEEC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPR-NPAGKVSPTELENIIMQIAGVADV--AVVGVPDTLSGEVPKAFVVKK 72 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~-~~G~~v~p~eiE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~ 72 (93)
+||.|++|+||+++|.||. ||+|| .+|++|+|.+||+.+.+||.|.++ ++++.++ ...++++++++
T Consensus 540 TGDig~~d~dG~l~i~GR~---kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~ 608 (700)
T PTZ00216 540 TGDVGSIAANGTLRIIGRV---KALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTD 608 (700)
T ss_pred ccceEEEcCCCcEEEEEeh---HhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecC
Confidence 5899999999999999887 99998 799999999999999999999863 4443322 25678888865
No 115
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.31 E-value=1.5e-11 Score=84.54 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=65.6
Q ss_pred CcccceeccC-C-----eEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 1 MEEEKALSVA-P-----YKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 1 ~~~~~~~d~~-g-----~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
++|.++.+++ | ++++.||. +|+|+++|.||+|.+||+.|.++|+|...+.+........+.+.+.++..++
T Consensus 293 TGDl~~~~~~~Gr~~~~~~~i~GR~---~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~ 369 (422)
T TIGR02155 293 TRDLTRLLPGTARTMRRMDRITGRS---DDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPE 369 (422)
T ss_pred cCcEEEEECCCCCcccccccccCcc---CCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecC
Confidence 4788888775 4 56787776 9999999999999999999999999986676666665555677777776543
Q ss_pred CCc-C--------HHHHHHHHcCcCC
Q psy12100 75 VEL-T--------EQEISSYVEPKKP 91 (93)
Q Consensus 75 ~~~-~--------~~~l~~~~~~~L~ 91 (93)
... . .++|++.+++++.
T Consensus 370 ~~~~~~~~~~~~~~~~i~~~~~~~~~ 395 (422)
T TIGR02155 370 SYTLRLHEQASLLAGEIQHTIKQEVG 395 (422)
T ss_pred cccccchHHHHHHHHHHHHHHHhccC
Confidence 211 1 3567777776654
No 116
>KOG1179|consensus
Probab=99.27 E-value=3.2e-11 Score=85.22 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=77.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCC-CceEEEEEEECCCCCcCH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLS-GEVPKAFVVKKPGVELTE 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~~ 79 (93)
.||.=..|+.||+||.-| +.|.+.++|+||+..|||+.|.....+.++.|+|+.-+.. |..-+|.|++.+....+.
T Consensus 492 tGDlLv~D~~GylYF~DR---tGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~ 568 (649)
T KOG1179|consen 492 TGDLLVADELGYLYFKDR---TGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDL 568 (649)
T ss_pred eCcEEEEecCCcEEEecc---CCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchH
Confidence 367788999999999855 5999999999999999999999999999999999876643 344566677788888899
Q ss_pred HHHHHHHcCcCCCC
Q psy12100 80 QEISSYVEPKKPVL 93 (93)
Q Consensus 80 ~~l~~~~~~~L~~~ 93 (93)
+.+-+++++.||++
T Consensus 569 ~~l~~~l~~~LP~Y 582 (649)
T KOG1179|consen 569 EKLYQHLRENLPSY 582 (649)
T ss_pred HHHHHHHHhhCccc
Confidence 99999999999975
No 117
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=99.26 E-value=1.4e-11 Score=88.48 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=58.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 73 (93)
+||.|.+|++|+|+++||. ||+||. +|+||.|+.||+.+.++|.|++.+|++ ... ..+.++|+++.
T Consensus 453 TGDlg~~d~~g~L~i~gRk---K~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k---~~~~AlIvp~~ 519 (613)
T COG1022 453 TGDLGELDEDGYLVITGRK---KELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDK---KFLVALIVPDF 519 (613)
T ss_pred cCceeEEcCCCcEEEeecc---cceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCC---cceEEEEeCCH
Confidence 4899999999999999887 999998 999999999999999999999999998 322 35788888753
No 118
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.19 E-value=1.9e-11 Score=82.66 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=46.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEE
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAV 53 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v 53 (93)
++|.+++|++|++++.||. ||+|+++|++++|.+||+.+.++|.|.+++|
T Consensus 359 TGDl~~~d~~g~~~~~gR~---~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 359 TGDLVRYLPDGNLEFLGRI---DDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred CCceEEEcCCCCEEEeecc---CCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 5799999999999999887 9999999999999999999999999998764
No 119
>PRK12582 acyl-CoA synthetase; Provisional
Probab=99.16 E-value=4.3e-11 Score=85.77 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=48.9
Q ss_pred Cccccee-c---cCCeEEEeeeeccccceeec-CCeeechHHHH--HHhhcCCCcceEEEEeeeCCC
Q psy12100 1 MEEEKAL-S---VAPYKKLAGGVKFLETIPRN-PAGKVSPTELE--NIIMQIAGVADVAVVGVPDTL 60 (93)
Q Consensus 1 ~~~~~~~-d---~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE--~~l~~~~~v~~~~v~~~~~~~ 60 (93)
+||.+++ | ++|+++|.||. ||+||+ +|+||+|.+|| .++.+||.|.+++|+|.+++.
T Consensus 456 TGDlg~~~d~~~~~g~l~i~GR~---~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~ 519 (624)
T PRK12582 456 LGDAARFVDPDDPEKGLIFDGRV---AEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF 519 (624)
T ss_pred ccceEEecCCcCCCCceEEeccc---hhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc
Confidence 4899998 4 46999999887 999996 79999999885 678899999999999987654
No 120
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=99.13 E-value=1.3e-10 Score=62.48 Aligned_cols=51 Identities=47% Similarity=0.608 Sum_probs=45.6
Q ss_pred HHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcCCCC
Q psy12100 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPVL 93 (93)
Q Consensus 37 eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L~~~ 93 (93)
|||++|.+||+|.+|+|++.+++.+++.+++++++ +.++|+++++++|+++
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~ 51 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPY 51 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GG
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCc
Confidence 79999999999999999999998888999999998 4489999999998864
No 121
>PTZ00297 pantothenate kinase; Provisional
Probab=98.87 E-value=1.1e-08 Score=79.33 Aligned_cols=59 Identities=24% Similarity=0.110 Sum_probs=51.8
Q ss_pred eccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEEC
Q psy12100 7 LSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK 72 (93)
Q Consensus 7 ~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 72 (93)
.+.||+|+|+||. ||+||. +|++|+|+.||+.+.++|.|.+++|+|-... .++|+|+++
T Consensus 846 W~~dG~L~IidRk---Kdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd 905 (1452)
T PTZ00297 846 WKRDRTLRLLGPP---LGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPN 905 (1452)
T ss_pred CccCCeEEEEecc---ccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeC
Confidence 4578999999877 999998 8999999999999999999999999986544 278888875
No 122
>KOG1256|consensus
Probab=98.85 E-value=8e-09 Score=74.80 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=59.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
.||.|.+|.+|.++|.||. |++||. .|++|.|+.||++....+-|.+.+|.|-+.. ..++++|++++.
T Consensus 531 TGDiG~~~p~G~l~IidRk---K~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e 599 (691)
T KOG1256|consen 531 TGDIGEWDPNGTLKIIDRK---KNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPE 599 (691)
T ss_pred cccceeECCCccEEEEecc---cceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChh
Confidence 4899999999999999777 999999 8999999999999999999999999876543 458888888654
No 123
>KOG1178|consensus
Probab=98.70 E-value=8e-08 Score=72.46 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=76.6
Q ss_pred cccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC-cCHH
Q psy12100 2 EEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE-LTEQ 80 (93)
Q Consensus 2 ~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 80 (93)
+|-+..-.+|.+.+.||. |++||.+|.++...+|++.+..+|.|.++......+...++.+.+|++...... ....
T Consensus 459 gD~gr~l~ng~l~~~GR~---d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~ 535 (1032)
T KOG1178|consen 459 GDNGRSLKNGGLEISGRA---DRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLIR 535 (1032)
T ss_pred cccceeecCCCEEEEEec---cceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhHH
Confidence 566766668889998888 889999999999999999999999999999999988877899999999876643 3457
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
.+++++...|+.+
T Consensus 536 ~i~~~l~~~La~y 548 (1032)
T KOG1178|consen 536 DIRNYLKKELASY 548 (1032)
T ss_pred HHHHhhcccccce
Confidence 8999999988764
No 124
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=98.48 E-value=5.9e-07 Score=50.68 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=38.4
Q ss_pred CeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC
Q psy12100 30 AGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE 76 (93)
Q Consensus 30 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 76 (93)
|.||||.+||++|.++|++...+.+.+......+.+.+.+.+.++..
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~ 47 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS 47 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC
Confidence 88999999999999999999777776766666788888888887653
No 125
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=98.47 E-value=1e-06 Score=61.48 Aligned_cols=61 Identities=3% Similarity=-0.095 Sum_probs=41.6
Q ss_pred EEEeeeeccccceeecCCeeechHHHHHHhhc---CCCcceEEEEeeeCCC-CCceEEEEEEECCC
Q psy12100 13 KKLAGGVKFLETIPRNPAGKVSPTELENIIMQ---IAGVADVAVVGVPDTL-SGEVPKAFVVKKPG 74 (93)
Q Consensus 13 ~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~---~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~ 74 (93)
..+. ..||+|||++++|.||+|.+||++|.+ ++++...+-+.+.... ....+.+.+...+.
T Consensus 321 ~r~~-~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~ 385 (445)
T TIGR03335 321 MRIL-NPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDK 385 (445)
T ss_pred ceeC-CCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCc
Confidence 4443 458889999999999999999999999 4666544544443332 23355555666544
No 126
>KOG1180|consensus
Probab=98.42 E-value=5.4e-07 Score=64.29 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=59.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeec-CCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
+||.|-+..||.|.|. +|.||++|. +|+.|+..-+|.++.+.|.|...||++-+.. ..++++|++++.
T Consensus 519 TGDIGe~~pdG~LkII---DRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~VaiVVPn~~ 587 (678)
T KOG1180|consen 519 TGDIGEFHPDGCLKII---DRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPVAIVVPNQK 587 (678)
T ss_pred ccccceecCCCcEEEe---echhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeEEEEcCCch
Confidence 4799999999999997 566999998 9999999999999999999999999876543 468999998753
No 127
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=98.22 E-value=8.2e-06 Score=57.03 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=44.0
Q ss_pred ccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 20 KFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 20 gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
||.+||+++.|.+|+|.+||..|.+.+.+..-+.+-+..++....+.+-|++.++
T Consensus 331 GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~ 385 (438)
T COG1541 331 GRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE 385 (438)
T ss_pred cccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence 5559999999999999999999999999985555444445556778888888754
No 128
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.32 E-value=0.00032 Score=50.64 Aligned_cols=43 Identities=7% Similarity=-0.002 Sum_probs=39.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIA 46 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~ 46 (93)
.+|.+....+|.+.+.||. |+++|++|++|.+.|||..+.++|
T Consensus 600 tgD~~r~~~dg~~e~lgr~---D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 600 TGDLARPLADGALEYLGRK---DSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred CCCeeeECCCCeEEEeccc---cceeEeceEecCcHHHHHHHhcCC
Confidence 3688888999999999887 999999999999999999998875
No 129
>KOG3628|consensus
Probab=95.01 E-value=0.062 Score=42.05 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=36.4
Q ss_pred eEEEeeeeccccceeecCCeeechHHHHHHhh-cCCCcceEEEEee
Q psy12100 12 YKKLAGGVKFLETIPRNPAGKVSPTELENIIM-QIAGVADVAVVGV 56 (93)
Q Consensus 12 ~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~ 56 (93)
-||+.|-+ ++.+-++|.+.+|.+||..+. .||.|..|+++-.
T Consensus 1244 ~LyVlG~i---~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~ 1286 (1363)
T KOG3628|consen 1244 LLYVLGAI---DETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA 1286 (1363)
T ss_pred eEEEeecc---cceeeecCcccCcchHHHHHHHhcccccceeeEee
Confidence 57887777 999999999999999999775 5999999998854
No 130
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=92.82 E-value=0.44 Score=34.56 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=45.0
Q ss_pred eEEEeeeeccccceeecCCeeechHHHHHHhhcC---CC--cceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHH
Q psy12100 12 YKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI---AG--VADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86 (93)
Q Consensus 12 ~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~---~~--v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 86 (93)
.+.|.||. +.++++.|++++..++++++.+. .+ +.+-++.+............++.+... ..+.+.+.+.+
T Consensus 388 ~i~F~~R~---~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~l 463 (528)
T PF03321_consen 388 RIEFVGRR---GQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKAL 463 (528)
T ss_dssp EEEEEEET---TEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHH
T ss_pred EEEEeccC---CceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHH
Confidence 57787776 88999999999999999998764 33 345555544322233456677777644 22344555555
Q ss_pred cCcC
Q psy12100 87 EPKK 90 (93)
Q Consensus 87 ~~~L 90 (93)
.+.|
T Consensus 464 D~~L 467 (528)
T PF03321_consen 464 DESL 467 (528)
T ss_dssp HHCS
T ss_pred HHHh
Confidence 5555
No 131
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=90.81 E-value=0.71 Score=32.75 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=25.5
Q ss_pred eccccceeec---CC--eeechHHHHHHh-hcCCCcceEEEE
Q psy12100 19 VKFLETIPRN---PA--GKVSPTELENII-MQIAGVADVAVV 54 (93)
Q Consensus 19 ~gR~~d~I~~---~G--~~v~p~eiE~~l-~~~~~v~~~~v~ 54 (93)
.||.+|++++ +| .+++|..++..+ ...+++.+.-++
T Consensus 323 ~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~ 364 (430)
T TIGR02304 323 EGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVL 364 (430)
T ss_pred cCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEE
Confidence 4666999985 44 456999999874 457888765444
No 132
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=81.92 E-value=5.3 Score=20.45 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=29.9
Q ss_pred echHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcC
Q psy12100 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP 88 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 88 (93)
-...++.+.|.++|+|.+|..+.-. .-..+.+... +..++.+++.+
T Consensus 10 ~~~~~~~~~l~~~p~V~~~~~vtG~-----~d~~~~v~~~-----d~~~l~~~i~~ 55 (74)
T PF01037_consen 10 DAYDEFAEALAEIPEVVECYSVTGE-----YDLILKVRAR-----DMEELEEFIRE 55 (74)
T ss_dssp THHHHHHHHHHTSTTEEEEEEESSS-----SSEEEEEEES-----SHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCEEEEEEEeCC-----CCEEEEEEEC-----CHHHHHHHHHH
Confidence 4567888999999999998877432 2244555443 45556665444
No 133
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=74.58 E-value=17 Score=22.28 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCcceEEEEee
Q psy12100 36 TELENIIMQIAGVADVAVVGV 56 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v~~~ 56 (93)
..|++.+.+.|+|.+|.|+..
T Consensus 78 ~~i~~~v~~~~~V~~A~vvv~ 98 (177)
T PF09580_consen 78 DRIANRVKKVPGVEDATVVVT 98 (177)
T ss_pred HHHHHHHhcCCCceEEEEEEE
Confidence 456777888999999999855
No 134
>COG1781 PyrI Aspartate carbamoyltransferase, regulatory subunit [Nucleotide transport and metabolism]
Probab=68.37 E-value=4.6 Score=24.75 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=23.2
Q ss_pred eeeccccceeecCCeeechHHHHHHhhcCCC
Q psy12100 17 GGVKFLETIPRNPAGKVSPTELENIIMQIAG 47 (93)
Q Consensus 17 GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~ 47 (93)
.+.|| ||+||+-|.-++..|+...-.=.|.
T Consensus 51 ~k~g~-KDiiKIE~~~L~~~e~~~laliaP~ 80 (153)
T COG1781 51 KKLGR-KDIIKIEGRFLSEEEVNKLALIAPN 80 (153)
T ss_pred cccCC-CceEEECCeecCHHHhhhheeeCCC
Confidence 34577 9999999999999999876433454
No 135
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=66.00 E-value=36 Score=22.62 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=33.8
Q ss_pred hHHHHHHhhcCCCcceEEEE-eeeCCCC---CceEE--EEEEECCCCCcCHH--HHHHHHcCcCCC
Q psy12100 35 PTELENIIMQIAGVADVAVV-GVPDTLS---GEVPK--AFVVKKPGVELTEQ--EISSYVEPKKPV 92 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~-~~~~~~~---~~~~~--~~v~~~~~~~~~~~--~l~~~~~~~L~~ 92 (93)
-.|+|+.|.+.++|..|-|. ..|.... ...+. +++..+++.+.+.. .++..++..++.
T Consensus 109 egELarTI~~idgV~~ArVhL~lP~~~~~~~~~~asASV~I~~~~~~~~~~~~v~I~~LVA~SV~g 174 (249)
T PRK15348 109 EQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPG 174 (249)
T ss_pred HHHHHHHHHhCCCeeEeEEEEECCCCCcccCCCCccEEEEEEeCCCCChHHHHHHHHHHHHHhcCC
Confidence 36799999999999988873 3343221 12233 33444554333322 577777766654
No 136
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=62.03 E-value=30 Score=21.35 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=16.3
Q ss_pred HHHHHHhhcCCCcceEEEEee
Q psy12100 36 TELENIIMQIAGVADVAVVGV 56 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v~~~ 56 (93)
..|.+.+.+.|+|.+|.++..
T Consensus 57 ~~Ia~~v~~v~~V~dA~vvVt 77 (158)
T TIGR02898 57 DEIASEAAKVKGVKDATVVIT 77 (158)
T ss_pred HHHHHHHhcCCCCceEEEEEE
Confidence 446666778999999998854
No 137
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=61.32 E-value=8.3 Score=17.70 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=11.9
Q ss_pred eeccCCeEEEeeee
Q psy12100 6 ALSVAPYKKLAGGV 19 (93)
Q Consensus 6 ~~d~~g~~~~~GR~ 19 (93)
.+|.+|.+|++|-.
T Consensus 19 avD~~GNiYv~G~T 32 (38)
T PF06739_consen 19 AVDSNGNIYVTGYT 32 (38)
T ss_pred EECCCCCEEEEEee
Confidence 57899999999865
No 138
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=60.75 E-value=41 Score=21.48 Aligned_cols=60 Identities=30% Similarity=0.356 Sum_probs=33.3
Q ss_pred echHHHHHHhhcCCCcceEEEE-eeeCCC------CCceEEEEEEECCCCCcC--HHHHHHHHcCcCCC
Q psy12100 33 VSPTELENIIMQIAGVADVAVV-GVPDTL------SGEVPKAFVVKKPGVELT--EQEISSYVEPKKPV 92 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~-~~~~~~------~~~~~~~~v~~~~~~~~~--~~~l~~~~~~~L~~ 92 (93)
---.|+|..|.++++|..|-|. ..|... ......+++.++++...+ ...|++.+...++.
T Consensus 115 ale~eL~~tI~~i~gV~~A~V~l~~Pe~~~f~~~~~~~sASV~l~~~~g~~l~~qv~~I~~LVa~sV~g 183 (206)
T PF01514_consen 115 ALEGELERTIESIDGVESARVHLVLPERSVFGENQQPPSASVVLKLKPGSELSEQVQGIQNLVASSVPG 183 (206)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEEEE----BTTB----EEEEEEEEE-TTS--GGGHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCCeeEEEEEEecCCccccccCCCCCeEEEEEEECCCCChHHHHHHHHHHHHHhcCC
Confidence 3346899999999999988874 333321 112334455556665544 35677776665543
No 139
>PF12503 CMV_1a_C: Cucumber mosaic virus 1a protein C terminal ; InterPro: IPR022184 This domain family is found in viruses, and is approximately 90 amino acids in length. The family is found in association with PF01443 from PFAM, PF01660 from PFAM. There is a conserved GLG sequence motif. 1a protein is the major virulence factor of the (Cucumber mosaic virus. The Ns strain of CMV causes necrotic lesions to Nicotiana spp. while other strains cause systemic mosaic. The determinant of the pathogenesis of these different strains is the specific amino acid residue at the 461 residue of the 1a protein. ; GO: 0008168 methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=60.23 E-value=2.7 Score=23.03 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.8
Q ss_pred cccceeec---CCeeechHHHHH
Q psy12100 21 FLETIPRN---PAGKVSPTELEN 40 (93)
Q Consensus 21 R~~d~I~~---~G~~v~p~eiE~ 40 (93)
|.|+|+++ +|.+.+|..+|-
T Consensus 26 ~vD~lVNvHf~~GrWm~P~~~~Y 48 (85)
T PF12503_consen 26 RVDPLVNVHFPNGRWMYPEGYEY 48 (85)
T ss_pred eccccEEEEecCCceecCCCeEE
Confidence 33999997 799999887653
No 140
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=56.46 E-value=14 Score=21.66 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=28.9
Q ss_pred eccCCeEEEeeeec-cccceeec-CC--eeechHHHHHHhhcCCCcceEEEEee
Q psy12100 7 LSVAPYKKLAGGVK-FLETIPRN-PA--GKVSPTELENIIMQIAGVADVAVVGV 56 (93)
Q Consensus 7 ~d~~g~~~~~GR~g-R~~d~I~~-~G--~~v~p~eiE~~l~~~~~v~~~~v~~~ 56 (93)
++.|=.++..|++- |.|.+=+. -| .+++|+|+|..+..-|. ..++|.
T Consensus 19 f~~DIvi~~dG~v~rr~K~lskrK~GTSHkl~~eEle~~lee~~E---~ivvGT 69 (121)
T COG1504 19 FEHDIVIRPDGKVERREKELSKRKYGTSHKLALEELEELLEEGPE---VIVVGT 69 (121)
T ss_pred ccccEEEecCCceehhhhhhhhhhcCcccccCHHHHHHHHhcCCc---EEEEec
Confidence 34444455556553 33433333 46 89999999999987664 455553
No 141
>PHA02553 6 baseplate wedge subunit; Provisional
Probab=56.07 E-value=31 Score=26.01 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=39.0
Q ss_pred eeecCCeeechHHHHHHhhc-CCCcceEEEEeeeCCCC--CceEEEEEEECCCCCcC---HHHHHHHHcC
Q psy12100 25 IPRNPAGKVSPTELENIIMQ-IAGVADVAVVGVPDTLS--GEVPKAFVVKKPGVELT---EQEISSYVEP 88 (93)
Q Consensus 25 ~I~~~G~~v~p~eiE~~l~~-~~~v~~~~v~~~~~~~~--~~~~~~~v~~~~~~~~~---~~~l~~~~~~ 88 (93)
+....+.-|.+.+-|....+ +|+|..+.+++...... -..+.+.|+++.+..++ .+++++++.+
T Consensus 307 ~~rt~~RAVTa~DYE~lA~~~~p~V~rA~~~~~~~~spp~~G~V~VvVvP~~g~~ls~~l~~~I~~yL~~ 376 (611)
T PHA02553 307 MREAQRRAVTASDYEAFVSERFGSIVQAVQCGGDSLKPPVYGYVFIAVKPKSGLYLTDVQKEDIKNYLKK 376 (611)
T ss_pred hhhcccccccHHHHHHHHHhhCCccEEEEEccCCcCCCCCCceEEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 45567788999999998866 79998888765322211 01344455555444333 2455555554
No 142
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=55.44 E-value=8.7 Score=19.51 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=19.9
Q ss_pred eeechHHHHHHhhcCCCcceEEEE
Q psy12100 31 GKVSPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 31 ~~v~p~eiE~~l~~~~~v~~~~v~ 54 (93)
..+++.++++.|.++|.|+.+.+-
T Consensus 32 ~~~~~~~~~~~l~~~p~V~~v~V~ 55 (69)
T PF08478_consen 32 FSLDLKKIEQRLEKLPWVKSVSVS 55 (69)
T ss_dssp CCSHHHHHHHCCCCTTTEEEEEEE
T ss_pred EEECHHHHHHHHHcCCCEEEEEEE
Confidence 467888999999999999877764
No 143
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=54.76 E-value=13 Score=27.74 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=25.5
Q ss_pred eEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100 12 YKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 12 ~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
.+.|+||. +.++++.|.+++-.+++.++.+
T Consensus 427 ~i~F~gR~---~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 427 QFKFIRRK---NVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred EEEEEccC---CcceecccccCCHHHHHHHHHH
Confidence 45666665 8999999999999999998876
No 144
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=54.14 E-value=54 Score=20.79 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=35.3
Q ss_pred chHHHHHHhhcCCCcceEEEE-eeeCCC------CCceEEEEEEECCCCCcC--HHHHHHHHcCcCCC
Q psy12100 34 SPTELENIIMQIAGVADVAVV-GVPDTL------SGEVPKAFVVKKPGVELT--EQEISSYVEPKKPV 92 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~-~~~~~~------~~~~~~~~v~~~~~~~~~--~~~l~~~~~~~L~~ 92 (93)
--.|+++.|.++++|..|-|. ..|... ......+++.++++...+ ...++..++..++.
T Consensus 108 le~EL~rtI~~i~~V~~ArVhl~~P~~~~f~~~~~~~sASV~l~~~~g~~l~~qv~~I~~LVa~SV~~ 175 (193)
T TIGR02544 108 IEQRLEQTLSQIDGVISARVHVVLPENDNNGRPKKPSSASVFIKYRPGLNLDALIPKIKRLVANSIPG 175 (193)
T ss_pred HHHHHHHHHHhcCCeeeeEEEEECCCCCcccccCCCCcEEEEEEeCCCCCcHHHHHHHHHHHHHhcCC
Confidence 346888999999999988873 344331 112333444555554433 35667777666553
No 145
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=54.03 E-value=20 Score=25.40 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=26.2
Q ss_pred cceeec-CCeeechHHHHHHhhcCCCcceEEEEeee
Q psy12100 23 ETIPRN-PAGKVSPTELENIIMQIAGVADVAVVGVP 57 (93)
Q Consensus 23 ~d~I~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~ 57 (93)
-..+.. -|..+.|++||+.|.+.|.++-.+++...
T Consensus 106 v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~E 141 (383)
T COG0075 106 VVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNE 141 (383)
T ss_pred eEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEecc
Confidence 334444 47899999999999999998766666543
No 146
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=52.74 E-value=31 Score=22.18 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=37.3
Q ss_pred cceeecCCeeechHHHHHHhhcC-CCcceEEEEeeeCCCCCceEEEEEEECCCCCcC---HHHHHHHH
Q psy12100 23 ETIPRNPAGKVSPTELENIIMQI-AGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT---EQEISSYV 86 (93)
Q Consensus 23 ~d~I~~~G~~v~p~eiE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~ 86 (93)
...+.....-....+.+....+. |+|..+.++..... .+ .+.+++....+ ..+ .++++++|
T Consensus 109 ~~~~~~~~~~gt~~dy~~~a~~~~~gV~~v~v~~~~~~-~G-~V~v~v~~~~g-~~~~~l~~~V~~~i 173 (243)
T PF04865_consen 109 LESLRSPSRAGTADDYEYWALSVSPGVADVKVYPNWNG-PG-TVDVYVLGANG-APSQELLAAVQAYI 173 (243)
T ss_pred HHhhcccccCCCHHHHHHHHHHhCCCceEEEEecCCCC-CC-EEEEEEccCCC-CCCHHHHHHHHHHh
Confidence 44444445667889999988887 99999988866442 22 23444444433 222 25566666
No 147
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=51.22 E-value=72 Score=21.37 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=30.0
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC-----HHHHHHHHcCcCC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-----EQEISSYVEPKKP 91 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~~~L~ 91 (93)
..+|++.+.++|+|.+.-=+-....+....+.+.++++++.... .+++++.++++++
T Consensus 215 ~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~ 276 (299)
T PRK09509 215 RQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFP 276 (299)
T ss_pred HHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 34677778888988654433333322233445666666553322 2445555555443
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=49.68 E-value=8.1 Score=20.36 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=17.2
Q ss_pred eeecCCeeechHHHHHHhhc
Q psy12100 25 IPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 25 ~I~~~G~~v~p~eiE~~l~~ 44 (93)
+++.+|..|++.++.+.+++
T Consensus 22 if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 22 IFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred HHHHcCCccCHHHHHHHHCC
Confidence 44568999999999999987
No 149
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=49.53 E-value=10 Score=22.44 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=9.9
Q ss_pred ceeccCCeEEEe
Q psy12100 5 KALSVAPYKKLA 16 (93)
Q Consensus 5 ~~~d~~g~~~~~ 16 (93)
.+.|+||+||++
T Consensus 92 ~~KDeDGFLYi~ 103 (121)
T PTZ00380 92 ACKRDDGFLYVS 103 (121)
T ss_pred HhcCCCCeEEEE
Confidence 457899999996
No 150
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=48.16 E-value=14 Score=25.40 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=14.5
Q ss_pred cceeccCCeEEEeeeec
Q psy12100 4 EKALSVAPYKKLAGGVK 20 (93)
Q Consensus 4 ~~~~d~~g~~~~~GR~g 20 (93)
...+|..|.|+|+|+.|
T Consensus 152 t~vfD~~G~lWFt~q~G 168 (353)
T COG4257 152 TAVFDPWGNLWFTGQIG 168 (353)
T ss_pred ceeeCCCccEEEeeccc
Confidence 56799999999998865
No 151
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=47.67 E-value=60 Score=19.44 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCcceEEEEe
Q psy12100 36 TELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v~~ 55 (93)
.++.+.|.++|+|..|+.+.
T Consensus 84 ~~~~~~l~~~p~V~~~~~~t 103 (153)
T PRK11179 84 PSALAKLESLDEVVEAYYTT 103 (153)
T ss_pred HHHHHHHhCCCCEEEEEEcc
Confidence 45666788999999888763
No 152
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=46.89 E-value=22 Score=20.54 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=17.8
Q ss_pred cceeecCCeeechHHHHHHhhc
Q psy12100 23 ETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 23 ~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
+..++++|..+++.+||.-+..
T Consensus 49 ~~~y~Igg~~~SL~dIe~~ILR 70 (117)
T PF04784_consen 49 KVRYNIGGQRFSLDDIEHGILR 70 (117)
T ss_pred ceEEEECCEEecHHHHHHhhcc
Confidence 3467789999999999986544
No 153
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=46.53 E-value=16 Score=22.56 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=23.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHh
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENII 42 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l 42 (93)
|+|-....++|.+...=...+..++++++|.+|....+|.-+
T Consensus 89 mgg~~i~~~~g~~~~~~d~~~~~e~v~i~g~~IPv~sLe~e~ 130 (156)
T cd07749 89 MGDVQKRLEDGWWETPVDLNRYKRFVEVEGMKIPVLSLEYEY 130 (156)
T ss_pred eeceEEecCCCEEecccCchhhhheeeECCEEccCcCHHHHH
Confidence 445455555554443323344466777777777666666543
No 154
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=45.35 E-value=69 Score=19.45 Aligned_cols=19 Identities=5% Similarity=0.335 Sum_probs=15.2
Q ss_pred HHHHHHhhcCCCcceEEEE
Q psy12100 36 TELENIIMQIAGVADVAVV 54 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v~ 54 (93)
.++.+.+.++|.|.+|+.+
T Consensus 91 ~~~~~~l~~~p~V~~~~~v 109 (164)
T PRK11169 91 EQFNAAVQKLEEIQECHLV 109 (164)
T ss_pred HHHHHHHhcCcceeeeeee
Confidence 4566778899999998875
No 155
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=44.50 E-value=88 Score=20.41 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHHHhhcCCCcceEEEEeeeCCCC-CceEEEEEEECCCCCcC-----HHHHHHHHcCcCCC
Q psy12100 36 TELENIIMQIAGVADVAVVGVPDTLS-GEVPKAFVVKKPGVELT-----EQEISSYVEPKKPV 92 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~-----~~~l~~~~~~~L~~ 92 (93)
.++++.+++.|++.++--+-...-+. .-...+.+..+++.+.. .+++++.++++++.
T Consensus 208 ~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~ 270 (284)
T PF01545_consen 208 EKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPG 270 (284)
T ss_dssp HHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 56777787789988766555444333 23344455555553222 35666666665543
No 156
>PRK12434 tRNA pseudouridine synthase A; Reviewed
Probab=44.47 E-value=90 Score=20.50 Aligned_cols=59 Identities=17% Similarity=0.343 Sum_probs=31.7
Q ss_pred echHHHHHHhhcCCCcceEEEEeeeCCCCCceEEE-EEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKA-FVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
---.+||++|....+ .+.-+++....+.|-+... ++...-....++..+...+...||+
T Consensus 27 TVq~~le~aL~~~~~-~~~~~~~agRTD~GVHA~~qv~~f~~~~~~~~~~l~~~lN~~LP~ 86 (245)
T PRK12434 27 TIQGKIESVLSEMTG-EEIEIIGCGRTDAGVHALNQVANFQTDEKLSEDKIKKYLNEYLPN 86 (245)
T ss_pred CHHHHHHHHHHHHhC-CCeEEEEeccCCCCcCccCcEEEEEcCCCCCHHHHHHHHHccCCC
Confidence 334578888877543 3444555444443322111 1112212234567888999998875
No 157
>KOG3178|consensus
Probab=44.12 E-value=73 Score=22.32 Aligned_cols=65 Identities=14% Similarity=-0.045 Sum_probs=42.9
Q ss_pred cCCeeechHHHHHHhhcC-CCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 28 NPAGKVSPTELENIIMQI-AGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 28 ~~G~~v~p~eiE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
+.|.|..+..|.+.-..+ |+|....-.+..+-..++.+..-=++..-.+.+.-++...|.+.|++
T Consensus 202 ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~ 267 (342)
T KOG3178|consen 202 IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP 267 (342)
T ss_pred CceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC
Confidence 688999999998887777 99877666555543334433332234544455566778888877764
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=43.87 E-value=89 Score=20.29 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=25.2
Q ss_pred cceeccCCeEEEeeeeccccceeecCCe---eechHHHHHHhhcCCCcceEEEEee
Q psy12100 4 EKALSVAPYKKLAGGVKFLETIPRNPAG---KVSPTELENIIMQIAGVADVAVVGV 56 (93)
Q Consensus 4 ~~~~d~~g~~~~~GR~gR~~d~I~~~G~---~v~p~eiE~~l~~~~~v~~~~v~~~ 56 (93)
..|.+.||.+.|.|. ++...+. ++.-......+...| .+..+++.
T Consensus 57 i~Y~~~dg~y~i~G~------l~d~~~~~~~~~t~~~~~~~~~~l~--~~~i~~g~ 104 (232)
T PRK10877 57 VLYITDDGKHIIQGP------MYDVSGTAPVNVTNQLLLKKLNALE--KEMIVYKA 104 (232)
T ss_pred EEEEcCCCCEEEeee------eEecCCCCCCChHHHHHHHHHHhhh--hhcEEecC
Confidence 467889998888765 5665543 443333344444444 23444443
No 159
>COG3743 Uncharacterized conserved protein [Function unknown]
Probab=43.74 E-value=2.6 Score=25.23 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=13.0
Q ss_pred CCeEEEeeeeccccceee
Q psy12100 10 APYKKLAGGVKFLETIPR 27 (93)
Q Consensus 10 ~g~~~~~GR~gR~~d~I~ 27 (93)
|+|+-|.||+.| ||.|.
T Consensus 106 d~~l~f~GRi~R-DdWi~ 122 (133)
T COG3743 106 DDYLNFDGRIER-DDWIA 122 (133)
T ss_pred HhhcCCcchhHH-HHHHH
Confidence 578888999888 66653
No 160
>PF01948 PyrI: Aspartate carbamoyltransferase regulatory chain, allosteric domain; InterPro: IPR020545 Aspartate carbamoyltransferase (aspartate transcarbamylase, ATCase) 2.1.3.2 from EC is an allosteric enzyme that plays a central role in the regulation of the pyrimidine pathway in bacteria. The holoenzyme is a dodecamer composed of six catalytic chains, each with an active site, and six regulatory chains lacking catalytic activity []. The catalytic subunits exist as a dimer of catalytic trimers, (c3)2, while the regulatory subunits exist as a trimer of regulatory dimers, (r2)3, therefore the complete holoenzyme can be represented as (c3)2(r2)3. The association of the catalytic subunits c3 with the regulatory subunits r2 is responsible for the establishment of positive co-operativity between catalytic sites for the binding of aspartate and it dictates the pattern of allosteric response toward nucleotide effectors. ATCase from Escherichia coli is the most extensively studied allosteric enzyme []. The crystal structure of the T-state, the T-state with CTP bound, the R-state with N-phosphonacetyl-L-aspartate (PALA) bound, and the R-state with phosphonoacetamide plus malonate bound have been used in interpreting kinetic and mutational studies. A high-resolution structure of E. coli ATCase in the presence of PALA (a bisubstrate analog) allows a detailed description of the binding at the active site of the enzyme and allows a detailed model of the tetrahedral intermediate to be constructed. The entire regulatory chain has been traced showing that the N-terminal regions of the regulatory chains R1 and R6 are located in close proximity to each other and to the regulatory site. This portion of the molecule may be involved in the observed asymmetry between the regulatory binding sites as well as in the heterotropic response of the enzyme []. The C-terminal domain of the regulatory chains have a rubredoxin-like zinc-bound fold. ATCase from Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans) differs from the other investigated enterobacterial ATCases by its absence of homotropic co-operativity toward the substrate aspartate and its lack of response to ATP which is an allosteric effector (activator) of this family of enzymes. Nevertheless, the E. herbicola ATCase has the same quaternary structure, two trimers of catalytic chains with three dimers of regulatory chains, (c3)2(r2)3, as other enterobacterial ATCases and shows extensive primary structure conservation []. ; PDB: 2BE9_B 1PG5_B 1SKU_D 1Q95_L 8ATC_B 3AT1_D 1RAI_D 4E2F_D 1NBE_B 6AT1_B ....
Probab=42.78 E-value=30 Score=19.57 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=20.7
Q ss_pred eeeccccceeecCCeeechHHHHHHhhcCCCcc
Q psy12100 17 GGVKFLETIPRNPAGKVSPTELENIIMQIAGVA 49 (93)
Q Consensus 17 GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~ 49 (93)
+..|| ||+||+.|..++..++...-.=.|.++
T Consensus 48 ~k~G~-KDIIKIe~~~l~~~e~~~laliaP~aT 79 (96)
T PF01948_consen 48 KKMGK-KDIIKIEGRFLSDEELDKLALIAPNAT 79 (96)
T ss_dssp TTTEE-EEEEEEETC--SHHHHHHHCCTSTT-E
T ss_pred cCCCc-CCEEEECCccCCHhHhheeEEECCCCE
Confidence 34567 999999999888888776533346653
No 161
>KOG4008|consensus
Probab=42.26 E-value=17 Score=24.12 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=16.3
Q ss_pred cceeccCCeEEEeeeecccccee
Q psy12100 4 EKALSVAPYKKLAGGVKFLETIP 26 (93)
Q Consensus 4 ~~~~d~~g~~~~~GR~gR~~d~I 26 (93)
++.-|+|||+.+++| ||.--.+
T Consensus 177 ~~~pDEdGwv~Vtr~-gr~~~s~ 198 (261)
T KOG4008|consen 177 ESVPDEDGWVTVTRR-GRALVSP 198 (261)
T ss_pred cCCCCcCceEEEeec-cccccCc
Confidence 456799999999988 6644443
No 162
>PRK00893 aspartate carbamoyltransferase regulatory subunit; Reviewed
Probab=40.26 E-value=18 Score=22.23 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=20.4
Q ss_pred eccccceeecCCeeechHHHHHHhhcCCCc
Q psy12100 19 VKFLETIPRNPAGKVSPTELENIIMQIAGV 48 (93)
Q Consensus 19 ~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v 48 (93)
.|| ||+||+-|..++..|+...-.=.|.+
T Consensus 52 ~Gk-KDIIKIE~~~l~~~e~~~laliaP~a 80 (152)
T PRK00893 52 LGR-KDIIKIENRFLSEEEVDQLALIAPNA 80 (152)
T ss_pred CCc-CCEEEECCcccCHhHhhheEEECCCC
Confidence 456 99999999988887777643223543
No 163
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=39.89 E-value=25 Score=14.18 Aligned_cols=11 Identities=0% Similarity=-0.332 Sum_probs=7.9
Q ss_pred eeccCCeEEEe
Q psy12100 6 ALSVAPYKKLA 16 (93)
Q Consensus 6 ~~d~~g~~~~~ 16 (93)
+.|.+|.+++.
T Consensus 11 ~~D~~G~lWig 21 (24)
T PF07494_consen 11 YEDSDGNLWIG 21 (24)
T ss_dssp EE-TTSCEEEE
T ss_pred EEcCCcCEEEE
Confidence 57888999884
No 164
>smart00426 TEA TEA domain.
Probab=39.81 E-value=17 Score=19.23 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=12.7
Q ss_pred CeeechHHHHHHhhc
Q psy12100 30 AGKVSPTELENIIMQ 44 (93)
Q Consensus 30 G~~v~p~eiE~~l~~ 44 (93)
|.-|.|.+||+++.+
T Consensus 2 g~~vWp~~lE~Af~~ 16 (68)
T smart00426 2 AEGVWSPDIEQAFQE 16 (68)
T ss_pred CCCcCcHHHHHHHHH
Confidence 778999999998765
No 165
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=39.67 E-value=1.1e+02 Score=19.91 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=31.7
Q ss_pred chHHHHHHhhcCCCcceEEEEeeeCCCC-CceEEEEEEECCCCCcC-----HHHHHHHHcCcCC
Q psy12100 34 SPTELENIIMQIAGVADVAVVGVPDTLS-GEVPKAFVVKKPGVELT-----EQEISSYVEPKKP 91 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~-----~~~l~~~~~~~L~ 91 (93)
...+|++.+.++|+|...--+-....+. .....+.++.+++.+.. ..++++.+.++++
T Consensus 193 ~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~ 256 (268)
T TIGR01297 193 DLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHP 256 (268)
T ss_pred cHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcC
Confidence 4567778888889886554443333333 34455666666654432 1345555554433
No 166
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=39.13 E-value=29 Score=20.49 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=17.9
Q ss_pred cceeec-CCeeechHHHHHHhhc
Q psy12100 23 ETIPRN-PAGKVSPTELENIIMQ 44 (93)
Q Consensus 23 ~d~I~~-~G~~v~p~eiE~~l~~ 44 (93)
...|.+ +|.++.|.+|+.+..+
T Consensus 58 ~gkV~lGGGl~m~~~evd~IA~~ 80 (126)
T PF12757_consen 58 AGKVNLGGGLFMDQEEVDAIARK 80 (126)
T ss_pred CCeeeCCCCcccCHHHHHHHHHH
Confidence 345777 7889999999998776
No 167
>PF08789 PBCV_basic_adap: PBCV-specific basic adaptor domain; InterPro: IPR014897 The small PBCV-specific basic adaptor protein is found fused to S/T protein kinases and the 2-Cysteine domain [].
Probab=38.04 E-value=35 Score=16.11 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=20.3
Q ss_pred ceeccCCeEEEeeeeccccceeecCCeeechHHH
Q psy12100 5 KALSVAPYKKLAGGVKFLETIPRNPAGKVSPTEL 38 (93)
Q Consensus 5 ~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~ei 38 (93)
+-.|..|...+.|=.|| .-++.-+|.+|++...
T Consensus 2 GkvdakgR~i~~g~rGg-~yV~~~~GKKvyvkk~ 34 (40)
T PF08789_consen 2 GKVDAKGRKIFKGPRGG-TYVISDGGKKVYVKKL 34 (40)
T ss_pred CcccCcCCEEEECCCCC-EEEeCCCCcEEeeEEc
Confidence 34577777777765454 3344446788887543
No 168
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=37.65 E-value=13 Score=23.44 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=27.5
Q ss_pred eeccCCeEEEeeeeccccceee---cCCeeechHHHHHHhhcCCC
Q psy12100 6 ALSVAPYKKLAGGVKFLETIPR---NPAGKVSPTELENIIMQIAG 47 (93)
Q Consensus 6 ~~d~~g~~~~~GR~gR~~d~I~---~~G~~v~p~eiE~~l~~~~~ 47 (93)
.+|++||+.+ +++++ ..+.++..++|++++.+.+.
T Consensus 27 ~ld~~G~v~v-------~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 27 TLDEEGWVDI-------DALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred ccCCCCCEEH-------HHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 4788999988 55554 35678999999999988764
No 169
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=36.36 E-value=57 Score=15.93 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=27.9
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP 88 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 88 (93)
...|++.|.+.|+|..+.+- .. . . .+.|...+.. .+..++.+.+.+
T Consensus 13 ~~~v~~~l~~~~GV~~v~vd-~~---~-~--~v~v~~~~~~-~~~~~i~~~i~~ 58 (62)
T PF00403_consen 13 AKKVEKALSKLPGVKSVKVD-LE---T-K--TVTVTYDPDK-TSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHHTSTTEEEEEEE-TT---T-T--EEEEEESTTT-SCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEE-CC---C-C--EEEEEEecCC-CCHHHHHHHHHH
Confidence 46799999999999665442 11 1 1 2334444433 466777777654
No 170
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=35.91 E-value=32 Score=17.17 Aligned_cols=16 Identities=6% Similarity=-0.091 Sum_probs=11.3
Q ss_pred cceeccCCeEEEeeee
Q psy12100 4 EKALSVAPYKKLAGGV 19 (93)
Q Consensus 4 ~~~~d~~g~~~~~GR~ 19 (93)
..|.|++|.+.|.|.+
T Consensus 35 i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 35 ILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEETTSSEEEES-E
T ss_pred EEEEcCCCCEEEEeEE
Confidence 4578889988887764
No 171
>TIGR00240 ATCase_reg aspartate carbamoyltransferase, regulatory subunit. The presence of this regulatory subunit allows feedback inhibition by CTP on aspartate carbamoyltransferase, the first step in the synthesis of CTP from aspartate. In many species, this regulatory subunit is not present. In Thermotoga maritima, the catalytic and regulatory subunits are encoded by a fused gene and the regulatory region has enough sequence differences to score below the trusted cutoff.
Probab=35.84 E-value=24 Score=21.70 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=20.7
Q ss_pred eeccccceeecCCeeechHHHHHHhhcCCCc
Q psy12100 18 GVKFLETIPRNPAGKVSPTELENIIMQIAGV 48 (93)
Q Consensus 18 R~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v 48 (93)
..|| ||+||+.|...+..|+...-.=.|.+
T Consensus 49 k~Gk-KDIIKIE~~~l~~~e~~~laliaP~a 78 (150)
T TIGR00240 49 KMGK-KDIVKIENTFLKEEEVDQIALIAPQA 78 (150)
T ss_pred cCCc-CCEEEECCcccCHhHhhheEEECCCC
Confidence 3466 99999999988887776642223543
No 172
>PRK14588 tRNA pseudouridine synthase ACD; Provisional
Probab=35.26 E-value=1.4e+02 Score=20.02 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=30.7
Q ss_pred echHHHHHHhhcCCCcceEEEEeeeCCCCCceEE-EEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPK-AFVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
---.+||++|..... ...-+++....+.|-+.. -++...-....+...+...+...||+
T Consensus 26 TVq~~Le~aL~~l~~-~~i~i~~AgRTDaGVHA~gQv~~f~~~~~~~~~~l~~~LN~~LP~ 85 (272)
T PRK14588 26 TVQGALEAAWQALTQ-ERRRIVLAGRTDAGVHARGQVAHVQTDTRHSLATIWRGLNAHLPE 85 (272)
T ss_pred CHHHHHHHHHHHhhC-CCceEEEecCCCcCcCccccEEEEEcCCCCCHHHHHHHHHhcCCC
Confidence 344678888776533 233344444333332211 11112222234577889999998874
No 173
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.01 E-value=17 Score=17.56 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.4
Q ss_pred ecCCeeechHHHHHHhhc
Q psy12100 27 RNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 27 ~~~G~~v~p~eiE~~l~~ 44 (93)
+-.|++++|..++..+..
T Consensus 29 ~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 29 QQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCcccCHHHHHHHHHH
Confidence 568999999999998864
No 174
>PF09979 DUF2213: Uncharacterized protein conserved in bacteria (DUF2213); InterPro: IPR016913 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.79 E-value=93 Score=19.41 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=25.0
Q ss_pred ceeccCCeEEEeee-eccccceeecCCe---------------eechHHH--HHHhhcC
Q psy12100 5 KALSVAPYKKLAGG-VKFLETIPRNPAG---------------KVSPTEL--ENIIMQI 45 (93)
Q Consensus 5 ~~~d~~g~~~~~GR-~gR~~d~I~~~G~---------------~v~p~ei--E~~l~~~ 45 (93)
-.+|.+|||.+... +.|.. +.-+.|. .-.|+++ ++.+.++
T Consensus 3 r~~~~~G~L~v~~~~iar~G-v~~Y~~~e~~~~~~~~~~~~~v~R~peevf~~~sl~Sf 60 (170)
T PF09979_consen 3 RRIDPDGYLHVKDVPIARTG-VQPYLGREIPGPEELPDRIYRVYRPPEEVFSPESLASF 60 (170)
T ss_pred eEECCCeEEEEeeeEEeeeE-EEEeccccCCccccCCCceEEEEECHHHhcCHHHHHHh
Confidence 35789999988655 44422 3333333 4568888 7777664
No 175
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=33.51 E-value=29 Score=21.00 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=18.2
Q ss_pred EEEeeeeccccceeecCCeeechHHH
Q psy12100 13 KKLAGGVKFLETIPRNPAGKVSPTEL 38 (93)
Q Consensus 13 ~~~~GR~gR~~d~I~~~G~~v~p~ei 38 (93)
.-|.||.=+ =++||++|..||+.+=
T Consensus 107 ~sLKgRLl~-i~~iKVdge~Vy~~~~ 131 (137)
T PF12101_consen 107 ASLKGRLLK-IKWIKVDGELVYKAEP 131 (137)
T ss_pred eeeEEEEEE-EEEEEECCEEEecCCc
Confidence 346677544 4589999999998763
No 176
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=33.40 E-value=34 Score=23.93 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=19.2
Q ss_pred CcccceeccC--------CeEEEeeeeccccceeecCCeeec
Q psy12100 1 MEEEKALSVA--------PYKKLAGGVKFLETIPRNPAGKVS 34 (93)
Q Consensus 1 ~~~~~~~d~~--------g~~~~~GR~gR~~d~I~~~G~~v~ 34 (93)
+.|.|.+..+ .++.+.||.+.++ ++|.+..
T Consensus 322 TeDlGvl~~~~~c~cr~g~~f~vlGR~~~ae----~RGCs~~ 359 (365)
T PF04443_consen 322 TEDLGVLHGDDDCGCRKGKYFEVLGRADGAE----IRGCSLT 359 (365)
T ss_pred EcceeeecCCCCCCCccCCEEEEEeCCCCCc----cCCcHHH
Confidence 3577766553 3899999985433 5666543
No 177
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=33.11 E-value=14 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.322 Sum_probs=27.5
Q ss_pred ccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCC
Q psy12100 8 SVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAG 47 (93)
Q Consensus 8 d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~ 47 (93)
|.+|++-+ |.. -++.+.-|.+...++|+..|...+.
T Consensus 104 d~dG~Is~-~eL---~~vl~~lge~~~deev~~ll~~~d~ 139 (160)
T COG5126 104 DHDGYISI-GEL---RRVLKSLGERLSDEEVEKLLKEYDE 139 (160)
T ss_pred CCCceecH-HHH---HHHHHhhcccCCHHHHHHHHHhcCC
Confidence 44566555 333 7788889999999999999988653
No 178
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.05 E-value=69 Score=16.15 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=21.6
Q ss_pred eecCCeeechHHHHHHhhcCCCcceEEEEe
Q psy12100 26 PRNPAGKVSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 26 I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
+...+..-...++-+.|++.|+|.++.++|
T Consensus 47 v~v~~~~~~l~~l~~~L~~i~~V~~v~~~~ 76 (76)
T cd04888 47 IDTSTMNGDIDELLEELREIDGVEKVELVG 76 (76)
T ss_pred EEcCchHHHHHHHHHHHhcCCCeEEEEEeC
Confidence 334555556777888889999998876653
No 179
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=30.82 E-value=1.2e+02 Score=18.93 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.7
Q ss_pred eeechHHHHHHhhcCCCcceEEEE
Q psy12100 31 GKVSPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 31 ~~v~p~eiE~~l~~~~~v~~~~v~ 54 (93)
..-.|.+++..|.+.|+|-+.-.+
T Consensus 134 ~i~d~~~l~~~L~~i~GVVe~GlF 157 (173)
T PF06026_consen 134 PIDDPEELERELKSIPGVVETGLF 157 (173)
T ss_dssp SBSSHHHHHHHHHTSTTEEEESEE
T ss_pred CCCCHHHHHHHHhCCCCEEeECcC
Confidence 335699999999999999876665
No 180
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=30.82 E-value=1.6e+02 Score=19.38 Aligned_cols=22 Identities=14% Similarity=0.499 Sum_probs=17.8
Q ss_pred echHHHHHHhhcCCCcceEEEE
Q psy12100 33 VSPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~ 54 (93)
..|.+++..|.+.|+|-+.-.|
T Consensus 187 ~dp~~l~~~L~~ipGVVe~GlF 208 (228)
T PRK13978 187 IDPYKFHEYLIHLTGVFETGYF 208 (228)
T ss_pred CCHHHHHHHHhcCCcEeeeCCc
Confidence 3788999999999999877443
No 181
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=30.73 E-value=68 Score=22.16 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=28.3
Q ss_pred cceee--cCCeeechHHHHHHhhcCCCcceEEEEeee
Q psy12100 23 ETIPR--NPAGKVSPTELENIIMQIAGVADVAVVGVP 57 (93)
Q Consensus 23 ~d~I~--~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~ 57 (93)
..+++ +........++|+.|.+.-++.+|.|++.+
T Consensus 53 ~GiV~I~i~~~~~~~~~Le~~L~~~fgL~~a~VVp~~ 89 (321)
T COG2390 53 EGIVKISINSPVEGCLELEQQLKERFGLKEAIVVPSD 89 (321)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHhcCCCeEEEEcCC
Confidence 44555 377778888899999999999999998764
No 182
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=29.60 E-value=1.6e+02 Score=19.04 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=31.0
Q ss_pred echHHHHHHhhcCCCcceEEEEeeeCCCCCce---EEEEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEV---PKAFVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
---.+||++|..... ....+.+....+.|-. -++.+.+. ....+..+...+...||+
T Consensus 25 TVq~~le~aL~~~~~-~~i~~~~agRTD~GVHA~~qv~~f~~~--~~~~~~~~~~~lN~~Lp~ 84 (227)
T TIGR00071 25 TVQGELEKALEAIGK-KKITIMSAGRTDKGVHAMGQVISFDTP--KEIPDNKLNAKLNALLPP 84 (227)
T ss_pred CHHHHHHHHHHHHhC-CCeeEEeeccCcCCccccccEEEEEec--CCCCHHHHHHHHHccCCC
Confidence 334678888877543 3444555444333322 12222222 234567888899998875
No 183
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=29.33 E-value=49 Score=17.00 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=27.0
Q ss_pred cCCeeechHHHHHHhhcC--CCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 28 NPAGKVSPTELENIIMQI--AGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 28 ~~G~~v~p~eiE~~l~~~--~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
+.|..+++.+|+..|..- +-+. |..+ ..+..--|.++++++
T Consensus 11 i~gk~lt~~~~~~Ll~~gkT~~ik-----GF~S-K~Gk~F~A~L~l~~~ 53 (62)
T PF13342_consen 11 IAGKKLTDEEVKELLEKGKTGLIK-----GFKS-KKGKPFDAYLVLDDD 53 (62)
T ss_pred EcCCCCCHHHHHHHHHcCCccCcc-----Cccc-CCCCEEeEEEEEcCC
Confidence 689999999999999652 3222 3333 234556677777654
No 184
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=28.56 E-value=84 Score=16.02 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=12.8
Q ss_pred hHHHHHHhhcCCCcceEE
Q psy12100 35 PTELENIIMQIAGVADVA 52 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~ 52 (93)
..+|++.|.+.|++.++-
T Consensus 54 ~~~i~~~l~~l~gv~~V~ 71 (72)
T PF01883_consen 54 REEIREALKALPGVKSVK 71 (72)
T ss_dssp HHHHHHHHHTSTT-SEEE
T ss_pred HHHHHHHHHhCCCCceEe
Confidence 467888888889987653
No 185
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.35 E-value=94 Score=20.66 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.6
Q ss_pred ccccceeecCCeeechHHHHHHhhcCCCcceEEEEe
Q psy12100 20 KFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 20 gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
+..|=+++++|+.+--..|++... .+|.+.+++.
T Consensus 20 ~~PK~Lvev~gr~ii~~~i~~L~~--~gi~e~vvV~ 53 (239)
T COG1213 20 DIPKALVEVGGREIIYRTIENLAK--AGITEFVVVT 53 (239)
T ss_pred CCCchhhhcCCeEeHHHHHHHHHH--cCCceEEEEe
Confidence 366889999999999999998765 5677777776
No 186
>TIGR02243 conserved hypothetical protein, phage tail-like region. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The function is unknown.
Probab=28.25 E-value=1.2e+02 Score=23.13 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=31.5
Q ss_pred eeecCCeeechHHHHHHhhcCCC--cceEEEEeeeCCCCCceEEEEEEEC
Q psy12100 25 IPRNPAGKVSPTELENIIMQIAG--VADVAVVGVPDTLSGEVPKAFVVKK 72 (93)
Q Consensus 25 ~I~~~G~~v~p~eiE~~l~~~~~--v~~~~v~~~~~~~~~~~~~~~v~~~ 72 (93)
.++....-+.+.+.|....++++ |..+.++.......+. +.++++..
T Consensus 493 ~lr~~~RaVT~~DYe~~Alev~g~~V~rA~~~p~~~G~~Gt-V~V~Vv~~ 541 (656)
T TIGR02243 493 PLRAVDRAVTLRDYEALALARAGLEVARAAALPAWEGEAGT-VRLVVAVQ 541 (656)
T ss_pred HHHhcCCCCCHHHHHHHHhcCCCCcEEEEEEEeccCCCCCe-EEEEEEec
Confidence 34455667889999999999888 9888888755433332 33444443
No 187
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=28.22 E-value=1.9e+02 Score=19.37 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCcceEEEEee-eC--CCC----CceEEEEEEECCCCCcC--HHHHHHHHcCcCCC
Q psy12100 36 TELENIIMQIAGVADVAVVGV-PD--TLS----GEVPKAFVVKKPGVELT--EQEISSYVEPKKPV 92 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v~~~-~~--~~~----~~~~~~~v~~~~~~~~~--~~~l~~~~~~~L~~ 92 (93)
+++|+.|...+||-.|-|--. +. +.+ -....+|+.-.++...+ ..++++.++..++.
T Consensus 112 Q~le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK~LV~nSv~g 177 (246)
T COG4669 112 QQLEQTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVANSVPG 177 (246)
T ss_pred HHHHHHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCCChhHhHHHHHHHHHhccCC
Confidence 568899999999987776433 32 211 12345566555554433 36888888777664
No 188
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=28.06 E-value=1.9e+02 Score=19.43 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=30.0
Q ss_pred chHHHHHHhhcCCCcceEEEEeeeCCCCCceEE-EEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 34 SPTELENIIMQIAGVADVAVVGVPDTLSGEVPK-AFVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
--.+||.+|........ .+.+......|-... -++..+-........+...+.+.||+
T Consensus 27 VQ~~le~aL~~i~~~~~-~i~~AGRTD~GVHA~gqv~hfd~~~~~~~~~~~~~lN~~Lp~ 85 (266)
T COG0101 27 VQGELEKALSKIGGESV-RVIGAGRTDAGVHALGQVVHFDTPADRPLEKLVRALNALLPP 85 (266)
T ss_pred HHHHHHHHHHHhcCCcc-eeEEecCCCcCccccccEEEEEcCCcccHHHHHHHHHhcCCC
Confidence 34688999988766654 232222222222211 11222211122267888888888884
No 189
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.83 E-value=63 Score=23.80 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=24.4
Q ss_pred echHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEE
Q psy12100 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVK 71 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 71 (93)
-....+|+.+.++++|..|+++- .|-.+-+.|.+
T Consensus 437 ~rl~~le~i~~~~~gv~~~~aiq-----aGreirv~v~~ 470 (514)
T TIGR03319 437 KRLEKLEEIANSFEGVEKSYAIQ-----AGREIRVMVKP 470 (514)
T ss_pred HHHHHHHHHHHhCCCchhhhhhh-----cCcEEEEEecC
Confidence 45678999999999999999972 33444444443
No 190
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=27.67 E-value=2.6e+02 Score=20.90 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=41.4
Q ss_pred cceeecCCeeechHHHHHHhhcCCCcceEEEE-eeeCCC----CCceEEEEEE--ECCCCCcCH---HHHHHHHcCcCCC
Q psy12100 23 ETIPRNPAGKVSPTELENIIMQIAGVADVAVV-GVPDTL----SGEVPKAFVV--KKPGVELTE---QEISSYVEPKKPV 92 (93)
Q Consensus 23 ~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~-~~~~~~----~~~~~~~~v~--~~~~~~~~~---~~l~~~~~~~L~~ 92 (93)
+.+-+++=.+---.|++..|.++++|..|-|. ..|... ....+.|-|+ ++++..++. +.|...++..+|.
T Consensus 125 ~f~q~v~y~rALegELartI~~l~~V~~ArVhLalPe~s~F~~~~~~~tASV~l~l~~g~~L~~~QV~aI~~LVA~SVpg 204 (555)
T TIGR00206 125 DFERSINLRRAIEGELSRTIEALDPVKAASVHLAMPKDALFVEEQEPPSASVRLTLRPGSDLDTNQIEGLVHLISYAVPG 204 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeeeEEEEEECCCCCccccCCCCCCEEEEEecCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 44444444444557899999999999888773 344331 1233444444 466666665 4556666665553
No 191
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=27.51 E-value=27 Score=20.85 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=8.4
Q ss_pred EEEeeeeccccce
Q psy12100 13 KKLAGGVKFLETI 25 (93)
Q Consensus 13 ~~~~GR~gR~~d~ 25 (93)
|+|.||.||-|..
T Consensus 87 LRFvGRSGRGKsF 99 (135)
T PF00853_consen 87 LRFVGRSGRGKSF 99 (135)
T ss_dssp -EECST-TTTSEE
T ss_pred cccccccCCccce
Confidence 7888999986544
No 192
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=27.03 E-value=16 Score=23.11 Aligned_cols=36 Identities=6% Similarity=0.089 Sum_probs=20.1
Q ss_pred eeccCCeEEEeeeeccccceee---cCCeeechHHHHHHhhcCCCc
Q psy12100 6 ALSVAPYKKLAGGVKFLETIPR---NPAGKVSPTELENIIMQIAGV 48 (93)
Q Consensus 6 ~~d~~g~~~~~GR~gR~~d~I~---~~G~~v~p~eiE~~l~~~~~v 48 (93)
.+|++||+.+ +|++. ..|.++...+|+.++.+.+.=
T Consensus 26 ~~d~~G~v~v-------~dLL~~~~~~~~~~t~~~i~~vV~~~~K~ 64 (186)
T PF01885_consen 26 VMDPDGWVSV-------DDLLRALRFKGLWVTEEDIREVVETDDKQ 64 (186)
T ss_dssp ---TT--EEH-------HHHHHHHHHT-TT--HHHHHHHHHH-SS-
T ss_pred ccCCCCCEeH-------HHHHHHHHHcCCCCCHHHHHHHHhhCCCC
Confidence 4889999987 45544 367788999999999887653
No 193
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.
Probab=26.21 E-value=1.9e+02 Score=18.76 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=31.2
Q ss_pred eechHHHHHHhhcCCCcceEEEEeeeCCCCCce---EEEEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEV---PKAFVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 32 ~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
+---.+||++|..... .+.-+.+....+.|-. -++.+.+. ...+...+...+...||+
T Consensus 20 ~TVq~~le~aL~~~~~-~~~~i~~agRTD~GVHA~~qvv~~~~~--~~~~~~~~~~~lN~~Lp~ 80 (239)
T cd02570 20 RTVQGELEKALSKIAG-EPVRVIGAGRTDAGVHALGQVAHFDTP--SEIPLEKLIKALNSLLPP 80 (239)
T ss_pred CCHHHHHHHHHHHHhC-CCeEEEEECcCCCCcCccccEEEEEEC--CCCCHHHHHHHHHccCCC
Confidence 3334677888777543 3444444443333322 12222222 234577888999998875
No 194
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=25.25 E-value=72 Score=14.59 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.8
Q ss_pred cCCeeechHHHHHHhh
Q psy12100 28 NPAGKVSPTELENIIM 43 (93)
Q Consensus 28 ~~G~~v~p~eiE~~l~ 43 (93)
.+|.++...|+++.+.
T Consensus 25 C~G~W~d~~el~~~~e 40 (41)
T PF13453_consen 25 CGGIWFDAGELEKLLE 40 (41)
T ss_pred CCeEEccHHHHHHHHh
Confidence 5899999999998865
No 195
>KOG2768|consensus
Probab=24.98 E-value=70 Score=20.99 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=21.7
Q ss_pred cccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcC
Q psy12100 2 EEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI 45 (93)
Q Consensus 2 ~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~ 45 (93)
+-.|.+|-++.|.|.||. .+.++|++|+.+
T Consensus 148 gTsGSidg~~rLviKGrf--------------q~kq~e~VLRrY 177 (231)
T KOG2768|consen 148 GTSGSIDGQQRLVIKGRF--------------QQKQFENVLRRY 177 (231)
T ss_pred ccccccCCCceEEEeccc--------------cHHHHHHHHHHH
Confidence 345667777777777765 467899999874
No 196
>PRK00021 truA tRNA pseudouridine synthase A; Validated
Probab=24.95 E-value=2.1e+02 Score=18.71 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=30.2
Q ss_pred chHHHHHHhhcCCCcceEEEEeeeCCCCCce---EEEEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 34 SPTELENIIMQIAGVADVAVVGVPDTLSGEV---PKAFVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
--.+||++|..... .+.-+.+....+.|-. -++.+.+. ...+.+.+...+...||+
T Consensus 27 Vq~~le~aL~~~~~-~~~~~~~agRTD~GVHA~~qvv~~~~~--~~~~~~~~~~~lN~~Lp~ 85 (244)
T PRK00021 27 VQGELEKALSKLAG-EPVRVIGAGRTDAGVHALGQVAHFDTP--APRPPEKWRRALNALLPD 85 (244)
T ss_pred HHHHHHHHHHHHhC-CCeEEEEEccCCCcccccCcEEEEEeC--CCCCHHHHHHHHHhcCCC
Confidence 34577888777543 3444444444333321 12222222 234667888888888875
No 197
>PRK00106 hypothetical protein; Provisional
Probab=24.86 E-value=27 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=18.6
Q ss_pred chHHHHHHhhcCCCcceEEEEe
Q psy12100 34 SPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
...++|+...++|+|..|+++-
T Consensus 459 rl~~lE~ia~~~~gV~~~yaiq 480 (535)
T PRK00106 459 RLRDLEEIANSFDGVQNSFALQ 480 (535)
T ss_pred HHHHHHHHHhcCCcHHHHHHHh
Confidence 4578999999999999988873
No 198
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=24.53 E-value=1.1e+02 Score=16.66 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=16.6
Q ss_pred ccccceeecCCeeechHHHHHHh
Q psy12100 20 KFLETIPRNPAGKVSPTELENII 42 (93)
Q Consensus 20 gR~~d~I~~~G~~v~p~eiE~~l 42 (93)
|....-|...|..+.|.|.|..-
T Consensus 31 g~~~kCI~~~g~~~TP~eFE~~~ 53 (82)
T PF01342_consen 31 GICGKCIQCEGRWFTPSEFERHG 53 (82)
T ss_dssp GTTSS-EEETTEEE-HHHHHHHH
T ss_pred cccCceEeeCCcEECHHHHHhhc
Confidence 33466788899999999999764
No 199
>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=24.37 E-value=62 Score=18.67 Aligned_cols=26 Identities=4% Similarity=-0.345 Sum_probs=19.2
Q ss_pred eccCCeEEEeee----eccccceeecCCee
Q psy12100 7 LSVAPYKKLAGG----VKFLETIPRNPAGK 32 (93)
Q Consensus 7 ~d~~g~~~~~GR----~gR~~d~I~~~G~~ 32 (93)
.|+=|..|+.|| .||....++.+|++
T Consensus 18 eDefgN~Yye~r~~ds~gr~RRwVIYngya 47 (118)
T COG3761 18 EDEFGNVYYEGRNIDSEGRTRRWVIYNGYA 47 (118)
T ss_pred chhccceeeeccCCccCCCeeeEEEEcCcc
Confidence 355577888887 46777888888874
No 200
>PF15568 Imm20: Immunity protein 20
Probab=24.28 E-value=34 Score=19.88 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=14.7
Q ss_pred CCeeechHHHHHHhhcCC
Q psy12100 29 PAGKVSPTELENIIMQIA 46 (93)
Q Consensus 29 ~G~~v~p~eiE~~l~~~~ 46 (93)
.|..+...+||..|....
T Consensus 22 s~~~~~~D~iE~~L~D~~ 39 (129)
T PF15568_consen 22 SGMVVEQDKIEQMLIDSN 39 (129)
T ss_pred ceeeeeHhHHHHHHHhhc
Confidence 388999999999987643
No 201
>KOG2446|consensus
Probab=23.89 E-value=34 Score=24.98 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=34.0
Q ss_pred ccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEE
Q psy12100 20 KFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV 70 (93)
Q Consensus 20 gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 70 (93)
.|.+..|...|.+|-|. |++.|..+-..++.+.-|......|..+.-+|-
T Consensus 106 n~~~~pi~~dg~~v~pe-V~~vL~~ikeFsd~i~SG~w~g~tgk~itdVvn 155 (546)
T KOG2446|consen 106 NRANRPILVDGKDVMPE-VENVLDHIKEFSDDIRSGSWKGYTGKKITDVVN 155 (546)
T ss_pred CcccCceecCCcccchh-HHHHHHHHHHHHHHhhcCCCCCCCCCeeeeEEE
Confidence 45688999999999997 899988766665555555544444444444333
No 202
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U
Probab=23.87 E-value=2.2e+02 Score=18.60 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=30.8
Q ss_pred eechHHHHHHhhcCCCc--------ceEEEEeeeCCCCCce---EEEEEEECCCCC---cCHHHHHHHHcCcCCC
Q psy12100 32 KVSPTELENIIMQIAGV--------ADVAVVGVPDTLSGEV---PKAFVVKKPGVE---LTEQEISSYVEPKKPV 92 (93)
Q Consensus 32 ~v~p~eiE~~l~~~~~v--------~~~~v~~~~~~~~~~~---~~~~v~~~~~~~---~~~~~l~~~~~~~L~~ 92 (93)
+---.+||++|.....+ ...-+.+....+.|-. -++.+.+..... .....+...+...||.
T Consensus 21 ~TVq~~le~aL~~~~~~~~~~~~~~~~~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~~~~~~~~lN~~Lp~ 95 (245)
T cd02568 21 KTIEGELERALVKAGAISESNAGDPKKIGFSRAARTDKGVHAARNVVSLKVIIDDPEGLGIGEDLVEKLNSHLPE 95 (245)
T ss_pred CChHHHHHHHHHHcCCcCccccCChhhcceeeecccccchhheeeEEEEEEeccccccccchHHHHHHHHccCCC
Confidence 33446788888887665 2334444443333321 112222221111 1256788888888874
No 203
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=23.82 E-value=1.1e+02 Score=15.86 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=18.0
Q ss_pred cceeecCCeee-chHHHHHHhhcCC
Q psy12100 23 ETIPRNPAGKV-SPTELENIIMQIA 46 (93)
Q Consensus 23 ~d~I~~~G~~v-~p~eiE~~l~~~~ 46 (93)
|-++.++|..| +..++.+.+..++
T Consensus 36 D~I~~ing~~v~~~~~~~~~l~~~~ 60 (82)
T PF13180_consen 36 DIILAINGKPVNSSEDLVNILSKGK 60 (82)
T ss_dssp EEEEEETTEESSSHHHHHHHHHCSS
T ss_pred cEEEEECCEEcCCHHHHHHHHHhCC
Confidence 44555799999 8888888887543
No 204
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=23.20 E-value=1.5e+02 Score=16.44 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.6
Q ss_pred eeechHHHHHHhhcCCCcceEEEEe
Q psy12100 31 GKVSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 31 ~~v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
...+..++|+.|.+.++|..+=+..
T Consensus 60 ~~g~td~lee~i~~ve~V~svev~~ 84 (88)
T TIGR00489 60 AEGGTEAAEESLSGIEGVESVEVTD 84 (88)
T ss_pred CCcChHHHHHHHhcCCCccEEEEEE
Confidence 3477899999999999987655543
No 205
>KOG2863|consensus
Probab=22.63 E-value=79 Score=22.64 Aligned_cols=19 Identities=5% Similarity=-0.083 Sum_probs=13.9
Q ss_pred eEEEeeeeccccceeecCCeeec
Q psy12100 12 YKKLAGGVKFLETIPRNPAGKVS 34 (93)
Q Consensus 12 ~~~~~GR~gR~~d~I~~~G~~v~ 34 (93)
.+|+.|+.| +|+++|.+|.
T Consensus 103 NIyYlG~ag----Vv~~~gvRIg 121 (456)
T KOG2863|consen 103 NIYYLGYAG----VVNFGGVRIG 121 (456)
T ss_pred ceEEeeecc----eEEECCEEEe
Confidence 357778864 8888888863
No 206
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.43 E-value=74 Score=20.95 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.3
Q ss_pred CeeechHHHHHHhhcCCCcceEEEE
Q psy12100 30 AGKVSPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 30 G~~v~p~eiE~~l~~~~~v~~~~v~ 54 (93)
|.--.|.++|..|.+.|+|-|.-.|
T Consensus 182 ~~i~dp~~le~~l~~IpGVVE~GlF 206 (227)
T COG0120 182 GRIEDPEELEKELNAIPGVVENGLF 206 (227)
T ss_pred CCcCCHHHHHHHHhCCCCEEEeccc
Confidence 3455789999999999999876665
No 207
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=22.28 E-value=1.3e+02 Score=15.58 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=14.0
Q ss_pred cceeccCCeEEEeeeeccccce
Q psy12100 4 EKALSVAPYKKLAGGVKFLETI 25 (93)
Q Consensus 4 ~~~~d~~g~~~~~GR~gR~~d~ 25 (93)
...+..+|...+.|+.|+.++.
T Consensus 44 ~v~l~v~g~~~~~g~lg~~~~~ 65 (77)
T PF01052_consen 44 PVELRVNGQPIFRGELGRVNGR 65 (77)
T ss_dssp EEEEEETTEEEEEEEEEEETTE
T ss_pred CEEEEECCEEEEEEEEEEECCE
Confidence 3445557777777777665553
No 208
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=22.01 E-value=96 Score=15.62 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=10.5
Q ss_pred cccceeccCCeEEEe
Q psy12100 2 EEEKALSVAPYKKLA 16 (93)
Q Consensus 2 ~~~~~~d~~g~~~~~ 16 (93)
+++.++|++|+..|.
T Consensus 33 ~~~vtid~dG~~~f~ 47 (57)
T PF09154_consen 33 SETVTIDEDGWGEFP 47 (57)
T ss_dssp SSEEEE-TTSEEEEE
T ss_pred CCeEEECCCeEEEEE
Confidence 457788999987774
No 209
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=21.90 E-value=72 Score=16.99 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.1
Q ss_pred CCeeechHHHHHHhhcCCC
Q psy12100 29 PAGKVSPTELENIIMQIAG 47 (93)
Q Consensus 29 ~G~~v~p~eiE~~l~~~~~ 47 (93)
---++++++|+.++.+.|.
T Consensus 48 ~Pd~~~ve~i~~vi~sCPS 66 (74)
T COG3592 48 MPDAVDVEEIVKVIDTCPS 66 (74)
T ss_pred CCCCCCHHHHHHHHHhCCc
Confidence 3456788999999999875
No 210
>PRK14586 tRNA pseudouridine synthase ACD; Provisional
Probab=21.90 E-value=2.4e+02 Score=18.47 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=30.0
Q ss_pred echHHHHHHhhcCCCcceEEEEeeeCCCCCce---EEEEEEECCCCCcCHHHHHHHHcCcCCC
Q psy12100 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEV---PKAFVVKKPGVELTEQEISSYVEPKKPV 92 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~~~L~~ 92 (93)
---.+||++|....+ ...-+++....+.|-. -++.+.+. ....++..+...+...||.
T Consensus 26 TVq~~le~aL~~~~~-~~i~~~~agRTD~GVHA~~qv~~f~~~-~~~~~~~~l~~~lN~~LP~ 86 (245)
T PRK14586 26 TVQGVFEDALERIFK-QRIYTQAAGRTDTGVHANGQVIAFNCP-NDRMTEEDIKNAMNANLPD 86 (245)
T ss_pred CHHHHHHHHHHHHhC-CCeeEEEecCCccCCCccCcEEEEEec-CCcCCHHHHHHHHHccCCC
Confidence 334678888777533 2333444433333221 12222222 1114677899999999875
No 211
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=21.63 E-value=1.8e+02 Score=16.85 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=26.8
Q ss_pred cCCeEEEeeeeccccceeec-CCe----------------eechHHHHHHhhcCCCcceEEEEee
Q psy12100 9 VAPYKKLAGGVKFLETIPRN-PAG----------------KVSPTELENIIMQIAGVADVAVVGV 56 (93)
Q Consensus 9 ~~g~~~~~GR~gR~~d~I~~-~G~----------------~v~p~eiE~~l~~~~~v~~~~v~~~ 56 (93)
-+|++.+.|..-+ .++|.. +|. .+.+++++..|..-|. .+++|.
T Consensus 6 ~~G~i~i~g~~y~-~~viv~p~~~~~w~~~~~s~~~~~~~~l~~~~l~~ll~~~pe---ivliGT 66 (117)
T cd05126 6 SFGSITVGGETYE-HDIVVYPDGSRARRWKELSKKTGTSHGLQPEELEELLEEGVE---VIVIGT 66 (117)
T ss_pred cCCEEEECCEEEc-CCEEEeCCccccccccccccccCCcccCCHHHHHHHHhcCCC---EEEEcC
Confidence 3677888766433 556654 332 3677888888866544 566654
No 212
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=21.38 E-value=1.5e+02 Score=19.23 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=18.5
Q ss_pred echHHHHHHhhcCCCcceEEEE
Q psy12100 33 VSPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~ 54 (93)
-.|.+++..|.+.|+|-+.-.+
T Consensus 181 ~d~~~l~~~l~~i~GVve~GlF 202 (218)
T TIGR00021 181 PDPEALEEELKSIPGVVETGLF 202 (218)
T ss_pred CCHHHHHHHHhcCCCEEEeeee
Confidence 4788999999999999887555
No 213
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.68 E-value=30 Score=20.19 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=19.2
Q ss_pred eEEEeeeeccccceeecCCeee-chHHHHH
Q psy12100 12 YKKLAGGVKFLETIPRNPAGKV-SPTELEN 40 (93)
Q Consensus 12 ~~~~~GR~gR~~d~I~~~G~~v-~p~eiE~ 40 (93)
.+.+.||+ ..++-+.|+-+ .|+++|+
T Consensus 63 nfvisG~I---Sqi~~i~~~iv~e~seleq 89 (124)
T COG4835 63 NFVISGRI---SQINQIKDRIVKEPSELEQ 89 (124)
T ss_pred eeEEeeeh---HHHHHHHhHhccCHHHhhH
Confidence 35667777 66777888888 7877775
No 214
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=20.44 E-value=1.4e+02 Score=20.79 Aligned_cols=31 Identities=6% Similarity=0.154 Sum_probs=21.6
Q ss_pred cCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCC
Q psy12100 9 VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIA 46 (93)
Q Consensus 9 ~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~ 46 (93)
-+|+++|++|. ...|. | ++|++++++.....
T Consensus 58 G~G~i~iT~rq---g~ei~--~--i~~e~~~~v~~~L~ 88 (317)
T COG2221 58 GDGLIHITSRQ---GLEIP--G--ISPEDADDVVEELR 88 (317)
T ss_pred CCCeEEEEecC---ceEec--c--CCHHHHHHHHHHHH
Confidence 37899999887 33332 2 88888888766544
No 215
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=20.36 E-value=36 Score=22.71 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=32.4
Q ss_pred ceeccCC-eEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEE
Q psy12100 5 KALSVAP-YKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 5 ~~~d~~g-~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~ 54 (93)
++--.+| -++-+||- +.-..++|+.+.|.++-+.+- +|++--.++.
T Consensus 154 a~~~t~G~ai~AtGsp---f~pv~~~g~~~~~~Q~NN~~i-FPGiglGal~ 200 (254)
T cd00762 154 AYTATEGRAIFASGSP---FHPVELNGGTYKPGQGNNLYI-FPGVALGVIL 200 (254)
T ss_pred HHhhcCCCEEEEECCC---CCCcccCCceeecccccceee-ccchhhhhHh
Confidence 3333455 56667665 778888999999999988754 7888655443
No 216
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=20.05 E-value=1.7e+02 Score=21.53 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=28.5
Q ss_pred eEEEeeeeccccceeecCCeeechHHHH--HHhhcCCCcceEEEEeeeCCC
Q psy12100 12 YKKLAGGVKFLETIPRNPAGKVSPTELE--NIIMQIAGVADVAVVGVPDTL 60 (93)
Q Consensus 12 ~~~~~GR~gR~~d~I~~~G~~v~p~eiE--~~l~~~~~v~~~~v~~~~~~~ 60 (93)
|+|| .|.|.+| .|.+||-.... ..|..-..+..-+|+++|+..
T Consensus 250 yVYF----ARPDS~I--dg~sVy~~R~~mG~~La~e~~~eaDvVipVPDSg 294 (470)
T COG0034 250 YVYF----ARPDSVI--DGISVYEARKRMGEKLAEEIPVEADVVIPVPDSG 294 (470)
T ss_pred EEEe----ecCcccc--CCeeHHHHHHHHHHHHHHhCCccccEEEecCCCC
Confidence 5566 3436554 89999887665 456655555556888998764
Done!