Query psy12100
Match_columns 93
No_of_seqs 197 out of 1209
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 18:47:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t5h_X 4-chlorobenzoyl COA lig 99.9 3.8E-21 1.3E-25 132.8 10.7 90 1-93 383-473 (504)
2 3ni2_A 4-coumarate:COA ligase; 99.8 5.6E-21 1.9E-25 132.8 10.1 90 1-93 415-504 (536)
3 4fuq_A Malonyl COA synthetase; 99.8 6E-21 2.1E-25 132.0 9.7 90 1-93 380-469 (503)
4 2d1s_A Luciferase, luciferin 4 99.8 1.1E-20 3.8E-25 131.8 9.4 89 1-92 422-510 (548)
5 3g7s_A Long-chain-fatty-acid-- 99.8 6.9E-21 2.4E-25 132.7 7.8 90 1-93 420-511 (549)
6 1pg4_A Acetyl-COA synthetase; 99.8 1.3E-20 4.3E-25 133.9 9.1 89 1-92 498-589 (652)
7 3r44_A Fatty acyl COA syntheta 99.8 2E-20 6.9E-25 129.7 8.6 89 1-93 394-482 (517)
8 3etc_A AMP-binding protein; ad 99.8 3E-20 1E-24 130.6 9.4 90 1-93 456-548 (580)
9 1mdb_A 2,3-dihydroxybenzoate-A 99.8 3.3E-20 1.1E-24 129.1 9.2 89 1-93 411-500 (539)
10 1amu_A GRSA, gramicidin synthe 99.8 8.3E-20 2.9E-24 127.9 9.8 88 1-93 411-498 (563)
11 3nyq_A Malonyl-COA ligase; A/B 99.8 7.5E-20 2.6E-24 126.6 9.4 91 1-93 386-477 (505)
12 3ipl_A 2-succinylbenzoate--COA 99.8 1.9E-19 6.4E-24 124.1 9.0 88 1-93 379-466 (501)
13 1ry2_A Acetyl-coenzyme A synth 99.8 9E-20 3.1E-24 129.9 7.5 90 1-93 507-606 (663)
14 1v25_A Long-chain-fatty-acid-C 99.8 4.1E-20 1.4E-24 128.7 4.8 89 1-93 416-505 (541)
15 3c5e_A Acyl-coenzyme A synthet 99.8 1.2E-19 4.2E-24 127.2 6.7 89 1-92 437-530 (570)
16 4gr5_A Non-ribosomal peptide s 99.8 1.3E-20 4.5E-25 131.8 1.4 90 1-93 450-540 (570)
17 3rix_A Luciferase, luciferin 4 99.8 1.4E-20 4.7E-25 131.2 1.0 89 1-92 420-508 (550)
18 3ivr_A Putative long-chain-fat 99.8 1.8E-20 6.3E-25 129.4 1.5 92 1-93 379-470 (509)
19 3e7w_A D-alanine--poly(phospho 99.8 8.7E-19 3E-23 121.2 9.6 88 1-92 380-471 (511)
20 3fce_A D-alanine--poly(phospho 99.8 7.6E-19 2.6E-23 121.4 9.1 89 1-93 381-473 (512)
21 3l8c_A D-alanine--poly(phospho 99.8 4.8E-19 1.6E-23 122.5 7.6 89 1-92 384-480 (521)
22 2v7b_A Benzoate-coenzyme A lig 99.8 2E-18 7E-23 119.6 9.0 89 1-93 410-501 (529)
23 3o83_A Peptide arylation enzym 99.8 9.8E-20 3.3E-24 126.9 1.7 88 1-92 420-508 (544)
24 3rg2_A Enterobactin synthase c 99.8 5.2E-18 1.8E-22 119.7 9.9 87 1-92 415-502 (617)
25 3tsy_A Fusion protein 4-coumar 99.7 1.6E-19 5.4E-24 132.7 1.7 90 1-93 462-551 (979)
26 3lax_A Phenylacetate-coenzyme 99.7 1E-17 3.6E-22 95.6 7.9 58 21-78 2-59 (109)
27 2vsq_A Surfactin synthetase su 99.7 1.6E-17 5.5E-22 125.0 9.0 88 1-93 842-929 (1304)
28 3gxs_A Phenylacetate-coenzyme 99.7 1.7E-17 5.8E-22 94.9 6.5 55 20-75 1-55 (109)
29 4gs5_A Acyl-COA synthetase (AM 99.7 5.1E-18 1.7E-22 113.5 4.3 88 1-93 232-323 (358)
30 3ite_A SIDN siderophore synthe 99.7 2.2E-18 7.7E-23 120.2 1.5 90 1-93 408-511 (562)
31 3qov_A Phenylacetate-coenzyme 99.7 1.8E-17 6.1E-22 112.7 5.5 87 1-91 303-402 (436)
32 2y27_A Phenylacetate-coenzyme 99.7 1.1E-17 3.7E-22 113.8 2.3 88 1-91 308-404 (437)
33 2y4o_A Phenylacetate-coenzyme 99.7 1.8E-17 6.2E-22 112.8 3.2 88 1-91 310-408 (443)
34 3kxw_A Saframycin MX1 syntheta 99.6 2.8E-17 9.5E-22 114.9 2.4 85 1-90 440-529 (590)
35 4dg8_A PA1221; ANL superfamily 99.6 2.2E-16 7.6E-21 111.9 5.9 67 1-71 400-466 (620)
36 3gqw_A Fatty acid AMP ligase; 99.6 1.5E-15 5E-20 105.8 5.0 84 1-90 443-526 (576)
37 4b2g_A GH3-1 auxin conjugating 96.2 0.0022 7.5E-08 46.0 2.2 33 9-44 426-458 (609)
38 4eql_A 4-substituted benzoates 96.0 0.0034 1.2E-07 44.8 2.5 33 10-45 415-447 (581)
39 4epl_A Jasmonic acid-amido syn 94.4 0.027 9.1E-07 40.3 2.9 31 11-44 423-453 (581)
40 2cvi_A 75AA long hypothetical 90.7 0.97 3.3E-05 23.4 5.3 46 35-90 15-60 (83)
41 2djw_A Probable transcriptiona 88.6 1.6 5.4E-05 23.0 5.2 47 35-91 15-61 (92)
42 2zbc_A 83AA long hypothetical 84.6 1.9 6.3E-05 22.0 4.0 44 35-88 15-58 (83)
43 2cg4_A Regulatory protein ASNC 72.6 11 0.00037 21.5 5.9 46 35-90 82-127 (152)
44 3dqg_A Heat shock 70 kDa prote 70.4 5.6 0.00019 23.2 3.5 41 5-45 87-130 (151)
45 1yj7_A ESCJ; mixed alpha/beta, 68.0 17 0.00058 21.8 6.2 58 35-92 92-153 (171)
46 2dbb_A Putative HTH-type trans 65.3 15 0.00051 20.8 4.6 20 36-55 83-102 (151)
47 2zzt_A Putative uncharacterize 58.2 20 0.00069 19.3 7.1 57 35-91 12-73 (107)
48 3n8e_A Stress-70 protein, mito 57.9 13 0.00046 22.4 3.6 41 5-45 107-150 (182)
49 3h0x_A 78 kDa glucose-regulate 56.4 14 0.00049 21.4 3.5 40 5-44 87-130 (152)
50 2p5v_A Transcriptional regulat 56.3 26 0.00089 20.1 5.8 46 35-90 85-130 (162)
51 3byp_A CZRB protein; membrane 54.7 20 0.0007 18.5 3.7 41 34-74 11-53 (94)
52 2cyy_A Putative HTH-type trans 53.7 21 0.0007 20.3 3.8 20 35-54 80-99 (151)
53 4e81_A Chaperone protein DNAK; 53.6 16 0.00054 22.7 3.5 40 5-44 88-130 (219)
54 2l69_A Rossmann 2X3 fold prote 52.4 4.9 0.00017 22.0 0.9 23 23-45 19-45 (134)
55 3dob_A Heat shock 70 kDa prote 50.9 21 0.00072 20.7 3.6 41 5-45 87-131 (152)
56 2pn6_A ST1022, 150AA long hypo 50.4 32 0.0011 19.3 4.5 21 34-54 77-97 (150)
57 2kke_A Uncharacterized protein 47.2 18 0.00061 16.7 2.2 17 31-47 18-34 (53)
58 3h90_A Ferrous-iron efflux pum 46.0 42 0.0014 21.2 4.7 41 34-74 207-247 (283)
59 3i4p_A Transcriptional regulat 44.8 18 0.00062 20.9 2.7 20 35-54 79-98 (162)
60 2e1c_A Putative HTH-type trans 43.3 44 0.0015 19.5 4.2 20 35-54 100-119 (171)
61 1i1g_A Transcriptional regulat 40.9 45 0.0016 18.3 3.9 46 35-90 77-122 (141)
62 2pjm_A Ribose-5-phosphate isom 40.3 49 0.0017 20.7 4.2 22 34-55 187-208 (226)
63 2y9j_Y Lipoprotein PRGK, prote 40.1 58 0.002 19.3 7.1 58 35-92 90-157 (170)
64 2k9l_A RNA polymerase sigma fa 39.2 1.9 6.4E-05 22.3 -2.1 33 5-44 39-71 (76)
65 2ia0_A Putative HTH-type trans 38.9 58 0.002 19.0 4.8 18 35-52 97-114 (171)
66 2b3g_B Cellular tumor antigen 38.8 19 0.00065 14.6 1.4 15 32-46 12-26 (28)
67 3hhe_A Ribose-5-phosphate isom 37.9 47 0.0016 21.3 3.9 23 33-55 210-232 (255)
68 2yww_A Aspartate carbamoyltran 37.4 16 0.00055 21.6 1.5 31 17-48 50-80 (149)
69 1pg5_B Aspartate carbamoyltran 36.5 19 0.00064 21.7 1.7 31 17-48 59-89 (168)
70 4fyy_B Aspartate carbamoyltran 36.4 11 0.00039 22.3 0.8 31 17-48 51-81 (153)
71 4ap8_A Molybdopterin synthase 36.3 57 0.0019 18.7 3.8 28 21-49 5-32 (135)
72 1wfx_A Probable RNA 2'-phospho 35.7 5.5 0.00019 24.3 -0.7 35 6-47 23-61 (186)
73 3l7o_A Ribose-5-phosphate isom 35.1 57 0.0019 20.4 3.9 23 33-55 182-204 (225)
74 2be7_D Aspartate carbamoyltran 34.6 16 0.00055 21.6 1.2 31 18-49 51-81 (153)
75 3dxs_X Copper-transporting ATP 33.6 36 0.0012 16.1 2.4 45 35-87 17-61 (74)
76 2jwk_A Protein TOLR; periplasm 33.5 44 0.0015 16.2 2.8 15 31-45 25-39 (74)
77 2vga_A Protein A41, A41; immun 32.9 26 0.0009 20.5 1.9 29 13-41 116-144 (207)
78 4a4j_A Pacszia, cation-transpo 31.1 43 0.0015 15.5 2.4 44 35-87 17-60 (69)
79 2k9m_A RNA polymerase sigma fa 29.5 7 0.00024 22.3 -0.9 33 5-44 30-62 (130)
80 1lk5_A D-ribose-5-phosphate is 29.4 90 0.0031 19.4 4.2 23 33-55 188-210 (229)
81 3cq1_A Putative uncharacterize 29.2 69 0.0024 17.0 3.6 29 33-61 59-87 (103)
82 1uwd_A Hypothetical protein TM 28.9 70 0.0024 16.9 3.6 28 34-61 61-88 (103)
83 2vh1_A FTSQ, cell division pro 28.8 32 0.0011 20.8 2.0 24 31-54 32-56 (220)
84 3u5r_E Uncharacterized protein 28.6 53 0.0018 19.6 3.0 37 6-45 149-185 (218)
85 2vh2_A FTSQ, cell division pro 27.9 35 0.0012 21.4 2.1 24 31-54 59-82 (255)
86 1o8b_A Ribose 5-phosphate isom 27.8 91 0.0031 19.3 3.9 23 33-55 177-199 (219)
87 3uw1_A Ribose-5-phosphate isom 27.3 1E+02 0.0036 19.4 4.2 23 33-55 194-216 (239)
88 1kwa_A Hcask/LIN-2 protein; PD 27.3 67 0.0023 16.2 4.3 25 23-47 48-75 (88)
89 3kwm_A Ribose-5-phosphate isom 27.1 98 0.0033 19.3 4.0 23 33-55 183-205 (224)
90 3ju3_A Probable 2-oxoacid ferr 27.1 30 0.001 19.0 1.5 22 23-44 93-114 (118)
91 2roe_A Heavy metal binding pro 26.7 54 0.0018 14.9 2.4 19 35-53 15-33 (66)
92 1xtz_A Ribose-5-phosphate isom 26.0 1E+02 0.0034 19.8 4.0 22 34-55 217-238 (264)
93 2ejy_A 55 kDa erythrocyte memb 25.9 65 0.0022 16.9 2.7 23 23-45 59-84 (97)
94 2hz5_A Dynein light chain 2A, 25.8 19 0.00065 19.9 0.5 21 34-54 10-33 (106)
95 2kt2_A Mercuric reductase; nme 25.3 52 0.0018 14.9 2.1 45 35-88 15-59 (69)
96 2op6_A Heat shock 70 kDa prote 25.2 92 0.0031 17.7 3.4 39 6-44 88-130 (152)
97 1cc8_A Protein (metallochapero 25.1 53 0.0018 15.5 2.1 18 36-53 20-38 (73)
98 3o46_A Maguk P55 subfamily mem 24.8 77 0.0026 16.0 3.1 25 23-47 51-78 (93)
99 2z17_A Pleckstrin homology SEC 24.4 60 0.002 16.9 2.4 25 23-47 70-97 (104)
100 2f8m_A Ribose 5-phosphate isom 24.1 1.2E+02 0.004 19.2 4.0 22 34-55 200-221 (244)
101 1uj6_A Ribose 5-phosphate isom 23.7 1.1E+02 0.0038 19.0 3.8 23 33-55 186-208 (227)
102 1cpz_A Protein (COPZ); copper 23.5 62 0.0021 14.5 2.4 19 35-53 15-33 (68)
103 3bpd_A Uncharacterized protein 23.5 56 0.0019 17.9 2.1 24 25-48 52-75 (100)
104 1y7n_A Amyloid beta A4 precurs 23.3 86 0.0029 16.0 3.3 23 23-45 53-78 (90)
105 1yg0_A COP associated protein; 23.1 62 0.0021 14.3 2.5 19 35-53 16-34 (66)
106 1ugi_A UGI, uracil-DNA glycosy 23.1 83 0.0028 15.8 5.7 25 23-47 14-38 (84)
107 2yt7_A Amyloid beta A4 precurs 22.7 64 0.0022 16.7 2.3 23 23-45 60-85 (101)
108 2xmw_A PACS-N, cation-transpor 22.6 66 0.0023 14.5 2.4 19 35-53 18-36 (71)
109 2l3m_A Copper-ION-binding prot 22.1 69 0.0024 14.5 2.4 18 36-53 21-38 (71)
110 1mwy_A ZNTA; open-faced beta-s 21.9 73 0.0025 14.7 2.5 19 35-53 18-36 (73)
111 2jxo_A Ezrin-radixin-moesin-bi 21.7 87 0.003 15.9 2.7 25 23-47 54-82 (98)
112 1aw0_A Menkes copper-transport 21.2 73 0.0025 14.4 2.4 18 36-53 19-36 (72)
113 2xmm_A SSR2857 protein, ATX1; 21.1 47 0.0016 14.7 1.4 19 35-53 16-34 (64)
114 3e17_A Tight junction protein 21.1 93 0.0032 15.6 3.1 25 23-47 44-71 (88)
115 1xjt_A Lysozyme; open conforma 20.9 1.1E+02 0.0038 18.5 3.3 37 4-44 47-83 (191)
116 1osd_A MERP, hypothetical prot 20.8 74 0.0025 14.4 2.4 28 26-53 7-36 (72)
117 3fze_A Protein STE5; alpha/bet 20.7 1.6E+02 0.0054 18.1 4.7 37 5-44 57-104 (196)
118 2aj0_A Probable cadmium-transp 20.6 73 0.0025 14.6 2.1 20 34-53 17-36 (71)
119 3fry_A Probable copper-exporti 20.6 59 0.002 15.4 1.8 19 34-53 19-37 (73)
120 3vhx_B Kinesin-like protein KI 20.0 26 0.0009 19.8 0.3 37 7-46 74-112 (120)
No 1
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.86 E-value=3.8e-21 Score=132.82 Aligned_cols=90 Identities=19% Similarity=0.359 Sum_probs=83.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|+||++++.||. ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.++++|+++++...+.+
T Consensus 383 TGDlg~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 459 (504)
T 1t5h_X 383 TSDVAVWTPEGTVRILGRV---DDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD 459 (504)
T ss_dssp EEEEEEECTTSCEEEEEEG---GGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHH
T ss_pred cCcEEEECCCceEEEeCcc---cCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHH
Confidence 4899999999999999888 9999999999999999999999999999999999998888999999999887777889
Q ss_pred HHHHHHcC-cCCCC
Q psy12100 81 EISSYVEP-KKPVL 93 (93)
Q Consensus 81 ~l~~~~~~-~L~~~ 93 (93)
++++++++ +|+.+
T Consensus 460 ~l~~~~~~~~L~~~ 473 (504)
T 1t5h_X 460 ALDTFCRSSELADF 473 (504)
T ss_dssp HHHHHHHTSSCCGG
T ss_pred HHHHHHhhccCccc
Confidence 99999998 88753
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.85 E-value=5.6e-21 Score=132.84 Aligned_cols=90 Identities=28% Similarity=0.391 Sum_probs=84.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|+||++++.||. ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++..++...+.+
T Consensus 415 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 491 (536)
T 3ni2_A 415 TGDIGYIDDDDELFIVDRL---KELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATED 491 (536)
T ss_dssp EEEEEEECTTSCEEEEEEC---SCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred cccEEEEcCCceEEEEecc---cceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHH
Confidence 4899999999999999888 9999999999999999999999999999999999998888999999999888778889
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 492 ~l~~~l~~~l~~~ 504 (536)
T 3ni2_A 492 EIKQYISKQVIFY 504 (536)
T ss_dssp HHHHHHHTTSCGG
T ss_pred HHHHHHHHhccCC
Confidence 9999999998853
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.85 E-value=6e-21 Score=131.95 Aligned_cols=90 Identities=23% Similarity=0.321 Sum_probs=84.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.+++|++++++..++.+++++++.++...+.+
T Consensus 380 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 456 (503)
T 4fuq_A 380 TGDLGKIDERGYVHILGRG---KDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEA 456 (503)
T ss_dssp EEEEEEECTTCEEEECCSS---TTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred cceeEEEcCCCcEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHH
Confidence 4899999999999999887 9999999999999999999999999999999999999888999999999888788899
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 457 ~l~~~l~~~L~~~ 469 (503)
T 4fuq_A 457 QVLHGLDGQLAKF 469 (503)
T ss_dssp HHHHHHBTTBCGG
T ss_pred HHHHHHHhhcccC
Confidence 9999999998863
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.84 E-value=1.1e-20 Score=131.81 Aligned_cols=89 Identities=27% Similarity=0.442 Sum_probs=82.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.++++++++++...+.+
T Consensus 422 TGDl~~~~~dG~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~ 498 (548)
T 2d1s_A 422 TGDIGYYDEEKHFFIVDRL---KSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEK 498 (548)
T ss_dssp EEEEEEECTTCCEEEEEEG---GGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred ccCEEEEcCCCeEEEeccc---cceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHH
Confidence 4899999999999999888 9999999999999999999999999999999999998888899999999877677889
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
+++++|+++|+.
T Consensus 499 ~l~~~~~~~l~~ 510 (548)
T 2d1s_A 499 EVMDYVASQVSN 510 (548)
T ss_dssp HHHHHHHTTSCG
T ss_pred HHHHHHHHhccc
Confidence 999999999875
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.83 E-value=6.9e-21 Score=132.70 Aligned_cols=90 Identities=30% Similarity=0.487 Sum_probs=64.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC--CCcC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG--VELT 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~ 78 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++++++ ...+
T Consensus 420 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 496 (549)
T 3g7s_A 420 TGDVGFIDEEGFLHFQDRV---KEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD 496 (549)
T ss_dssp EEEEEEECTTSCEEEEEEC---------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCC
T ss_pred cCcEEEEcCCceEEEeccc---cceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCC
Confidence 4899999999999999888 9999999999999999999999999999999999998888999999999876 4567
Q ss_pred HHHHHHHHcCcCCCC
Q psy12100 79 EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 ~~~l~~~~~~~L~~~ 93 (93)
.++|+++++++|+.+
T Consensus 497 ~~~l~~~l~~~L~~~ 511 (549)
T 3g7s_A 497 EEDIIEWVRERISGY 511 (549)
T ss_dssp HHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHhccCc
Confidence 899999999999864
No 6
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.83 E-value=1.3e-20 Score=133.94 Aligned_cols=89 Identities=20% Similarity=0.345 Sum_probs=81.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++|+||+++|.||. ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++...+
T Consensus 498 TGDlg~~d~dG~l~i~GR~---dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~ 574 (652)
T 1pg4_A 498 SGDGARRDEDGYYWITGRV---DDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE 574 (652)
T ss_dssp EEEEEEECTTSCEEEEEES---SSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred CCcEEEEcCCCcEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHH
Confidence 4899999999999999888 99999999999999999999999999999999999988889999999998775444
Q ss_pred -HHHHHHHHcCcCCC
Q psy12100 79 -EQEISSYVEPKKPV 92 (93)
Q Consensus 79 -~~~l~~~~~~~L~~ 92 (93)
.++|+++|+++|++
T Consensus 575 ~~~~l~~~l~~~l~~ 589 (652)
T 1pg4_A 575 LYAEVRNWVRKEIGP 589 (652)
T ss_dssp HHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHhCCC
Confidence 47899999998875
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.83 E-value=2e-20 Score=129.67 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=80.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||++|.++|+|.+++|++.+++..++.+++++ +.++...+.+
T Consensus 394 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~ 469 (517)
T 3r44_A 394 TGDIGEIDDEGYLYIKDRL---KDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQ 469 (517)
T ss_dssp EEEEEEECTTSCEEEEECG---GGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHH
T ss_pred cceeEEEcCCeeEEEecCC---cCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHH
Confidence 4799999999999999887 99999999999999999999999999999999999988888888887 5556667889
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++|+++|+.+
T Consensus 470 ~l~~~l~~~L~~~ 482 (517)
T 3r44_A 470 QIVEYCGTRLARY 482 (517)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHHhCCCC
Confidence 9999999998853
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.83 E-value=3e-20 Score=130.57 Aligned_cols=90 Identities=24% Similarity=0.347 Sum_probs=81.3
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++|+||+++|.||. ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.+++++++.++...+
T Consensus 456 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~ 532 (580)
T 3etc_A 456 TGDMAWMDEDGYLWFVGRA---DDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDS 532 (580)
T ss_dssp EEEEEEECTTSCEEEEEES---SSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred cCcEEEECCCCcEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHH
Confidence 4899999999999999888 99999999999999999999999999999999999998899999999998775443
Q ss_pred -HHHHHHHHcCcCCCC
Q psy12100 79 -EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 -~~~l~~~~~~~L~~~ 93 (93)
.++|+++++++|+++
T Consensus 533 ~~~~l~~~l~~~l~~~ 548 (580)
T 3etc_A 533 LKNELQDHVKNVTAPY 548 (580)
T ss_dssp HHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHhhCCCc
Confidence 368999999988753
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.82 E-value=3.3e-20 Score=129.12 Aligned_cols=89 Identities=20% Similarity=0.331 Sum_probs=80.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.+++++++.. ...+.+
T Consensus 411 TGDlg~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~ 486 (539)
T 1mdb_A 411 TGDIVRLTRDGYIVVEGRA---KDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAA 486 (539)
T ss_dssp EEEEEEECTTSCEEEEEEG---GGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHH
T ss_pred cCceEEECCCCcEEEeccc---cceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHH
Confidence 4899999999999999888 999999999999999999999999999999999999888889999999873 356788
Q ss_pred HHHHHHcCc-CCCC
Q psy12100 81 EISSYVEPK-KPVL 93 (93)
Q Consensus 81 ~l~~~~~~~-L~~~ 93 (93)
+++++++++ |+.+
T Consensus 487 ~l~~~l~~~~L~~~ 500 (539)
T 1mdb_A 487 ELKAFLRERGLAAY 500 (539)
T ss_dssp HHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCCcc
Confidence 999999987 8753
No 10
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.81 E-value=8.3e-20 Score=127.90 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=79.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|+||+++|.||. ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++... ..+.+
T Consensus 411 TGDlg~~d~dG~l~i~GR~---~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~ 485 (563)
T 1amu_A 411 TGDQARWLSDGNIEYLGRI---DNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLE 485 (563)
T ss_dssp EEEEEEECTTSCEEEEEEG---GGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHH
T ss_pred cCCEEEEcCCCeEEEeccc---cCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHH
Confidence 4799999999999999888 999999999999999999999999999999999999888889999998764 35678
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+|+++++++|+.+
T Consensus 486 ~l~~~l~~~L~~y 498 (563)
T 1amu_A 486 QLRQFSSEELPTY 498 (563)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHhhCchh
Confidence 9999999988753
No 11
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.81 E-value=7.5e-20 Score=126.61 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=81.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC-CCCcCH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP-GVELTE 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~ 79 (93)
+||.+++|++|++++.||.+ ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.+++++++.+ ....+.
T Consensus 386 TGDl~~~~~dG~l~~~GR~~--d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~ 463 (505)
T 3nyq_A 386 TGDMAVRDPDGYVRIVGRKA--TDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPAL 463 (505)
T ss_dssp EEEEEEECTTSCEEEEEESS--CCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCH
T ss_pred cCCeEEECCCccEEEeCCcc--CceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCH
Confidence 48999999999999998851 489999999999999999999999999999999999988999999999876 345678
Q ss_pred HHHHHHHcCcCCCC
Q psy12100 80 QEISSYVEPKKPVL 93 (93)
Q Consensus 80 ~~l~~~~~~~L~~~ 93 (93)
++|+++++++|+.+
T Consensus 464 ~~l~~~l~~~L~~~ 477 (505)
T 3nyq_A 464 GTLADHVAARLAPH 477 (505)
T ss_dssp HHHHHHHHHHTCGG
T ss_pred HHHHHHHHhhCCCC
Confidence 89999999998853
No 12
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.80 E-value=1.9e-19 Score=124.06 Aligned_cols=88 Identities=18% Similarity=0.377 Sum_probs=79.8
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++.. ...+.+
T Consensus 379 TGDl~~~~~~G~l~~~GR~---dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~ 453 (501)
T 3ipl_A 379 TGDIAEIDHEGYVMIYDRR---KDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKA 453 (501)
T ss_dssp EEEEEEECTTSCEEEEEEC---CCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHH
T ss_pred cCCEEEEcCCCeEEEEccc---cceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHH
Confidence 4899999999999999888 99999999999999999999999999999999999988888898988864 345789
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 454 ~l~~~l~~~L~~~ 466 (501)
T 3ipl_A 454 QLIAYLSKHLAKY 466 (501)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHhhCccc
Confidence 9999999998763
No 13
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.80 E-value=9e-20 Score=129.91 Aligned_cols=90 Identities=26% Similarity=0.305 Sum_probs=77.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCC---c
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE---L 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~ 77 (93)
+||.+++|+||+++|.||. ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++|+++++.. .
T Consensus 507 TGDlg~~d~dG~l~i~GR~---dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~ 583 (663)
T 1ry2_A 507 TGDGAAKDKDGYIWILGRV---DDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA 583 (663)
T ss_dssp EEEEEEECTTCCEEECSCT---TSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------
T ss_pred cCCEEEEcCCCCEEEEeec---CCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccc
Confidence 4899999999999999887 999999999999999999999999999999999999888889999999886543 2
Q ss_pred -C------HHHHHHHHcCcCCCC
Q psy12100 78 -T------EQEISSYVEPKKPVL 93 (93)
Q Consensus 78 -~------~~~l~~~~~~~L~~~ 93 (93)
+ .++|+++++++|+++
T Consensus 584 ~~~~~~~l~~~l~~~l~~~L~~~ 606 (663)
T 1ry2_A 584 TDDELQDIKKHLVFTVRKDIGPF 606 (663)
T ss_dssp ----CCSHHHHHHHHHHHHTCTT
T ss_pred cchhHHHHHHHHHHHHHHhCCCC
Confidence 1 578999999988764
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.79 E-value=4.1e-20 Score=128.70 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=56.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|+++|.||. ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.+++++++. +...+.+
T Consensus 416 TGDlg~~d~dG~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~~~ 491 (541)
T 1v25_A 416 TGDIAVWDEEGYVEIKDRL---KDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPE 491 (541)
T ss_dssp EEEEEEECTTCCEEEEEES---SCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------
T ss_pred cCCEEEEcCCceEEEeecc---cceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCCHH
Confidence 4899999999999999888 99999999999999999999999999999999999998889999999876 4445667
Q ss_pred HHHHHHcC-cCCCC
Q psy12100 81 EISSYVEP-KKPVL 93 (93)
Q Consensus 81 ~l~~~~~~-~L~~~ 93 (93)
++++++++ +|+.+
T Consensus 492 ~l~~~~~~~~L~~~ 505 (541)
T 1v25_A 492 ELNEHLLKAGFAKW 505 (541)
T ss_dssp ---------CCCTT
T ss_pred HHHHHHHhccCccc
Confidence 89999988 78764
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.79 E-value=1.2e-19 Score=127.22 Aligned_cols=89 Identities=26% Similarity=0.403 Sum_probs=78.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC--Cc-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV--EL- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--~~- 77 (93)
+||.+++|++|+++|.||. ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.++++|++.++. ..
T Consensus 437 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 513 (570)
T 3c5e_A 437 LGDRGIKDEDGYFQFMGRA---DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDP 513 (570)
T ss_dssp EEEEEEECTTSCEEEEEEG---GGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCH
T ss_pred cceeEEEcCCceEEEEecC---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcch
Confidence 4799999999999999887 99999999999999999999999999999999999988888999999987653 11
Q ss_pred --CHHHHHHHHcCcCCC
Q psy12100 78 --TEQEISSYVEPKKPV 92 (93)
Q Consensus 78 --~~~~l~~~~~~~L~~ 92 (93)
..++|+++|+++|+.
T Consensus 514 ~~~~~~l~~~l~~~L~~ 530 (570)
T 3c5e_A 514 EQLTKELQQHVKSVTAP 530 (570)
T ss_dssp HHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHhhCcc
Confidence 247889999888875
No 16
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.79 E-value=1.3e-20 Score=131.85 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=16.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC-CCcCH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG-VELTE 79 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~ 79 (93)
+||.+++|++|+++|.||. ||+||++|+||+|.|||+.|.+||+|.+++|++.+++.+++.+++++++.+. ...+.
T Consensus 450 TGDlg~~d~dG~l~~~GR~---~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 526 (570)
T 4gr5_A 450 TGDLARRRADGVLEYVGRA---DDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDA 526 (570)
T ss_dssp EEEEEEECTTSCEEEEEC--------------------------------------------------------------
T ss_pred CCCeEEECCCCeEEEEccc---CCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCH
Confidence 4799999999999999887 9999999999999999999999999999999999888788889999987654 34567
Q ss_pred HHHHHHHcCcCCCC
Q psy12100 80 QEISSYVEPKKPVL 93 (93)
Q Consensus 80 ~~l~~~~~~~L~~~ 93 (93)
++|+++|+++|+.+
T Consensus 527 ~~l~~~l~~~l~~~ 540 (570)
T 4gr5_A 527 AELRRHVAEALPAY 540 (570)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCccc
Confidence 88999999988754
No 17
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.78 E-value=1.4e-20 Score=131.21 Aligned_cols=89 Identities=28% Similarity=0.421 Sum_probs=15.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.+++++++.++...+.+
T Consensus 420 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 496 (550)
T 3rix_A 420 SGDIAYWDEDEHFFIVDRL---KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK 496 (550)
T ss_dssp EEEEEEECTTCCEEEC----------------------------------------------------------------
T ss_pred cCcEEEEeCCceEEEEecc---hheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHH
Confidence 4899999999999999888 9999999999999999999999999999999999998888999999998877767778
Q ss_pred HHHHHHcCcCCC
Q psy12100 81 EISSYVEPKKPV 92 (93)
Q Consensus 81 ~l~~~~~~~L~~ 92 (93)
+++++++++|+.
T Consensus 497 ~l~~~~~~~l~~ 508 (550)
T 3rix_A 497 EIVDYVASQVTT 508 (550)
T ss_dssp ------------
T ss_pred HHHHHHHHhccc
Confidence 899999888764
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.78 E-value=1.8e-20 Score=129.41 Aligned_cols=92 Identities=25% Similarity=0.356 Sum_probs=17.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||.+. ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..++.+++++++.++...+.+
T Consensus 379 TGDl~~~~~dG~l~~~GR~d~-~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 457 (509)
T 3ivr_A 379 TGDMGRFDADGYLFYAGRAPE-KELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAAD 457 (509)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------------------------------------------------------
T ss_pred cccEEEECCCceEEEeCCCCc-ceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHH
Confidence 489999999999999977643 8899999999999999999999999999999999998888899999998877767788
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 458 ~l~~~l~~~L~~~ 470 (509)
T 3ivr_A 458 ALAEFVASLIARY 470 (509)
T ss_dssp -------------
T ss_pred HHHHHHHhhCccc
Confidence 9999999998764
No 19
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.78 E-value=8.7e-19 Score=121.19 Aligned_cols=88 Identities=13% Similarity=-0.009 Sum_probs=77.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++ +||++++.||. ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.+++++++.++....
T Consensus 380 TGDlg~~-~dG~l~~~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 455 (511)
T 3e7w_A 380 TGDAGFI-QDGQIFCQGRL---DFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEF 455 (511)
T ss_dssp EEEEEEE-ETTEEEEEEES---SSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHH
T ss_pred CCCeEEc-cCCeEEEEccc---cCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchh
Confidence 4799999 59999999887 99999999999999999999999999999999999888888999999988765443
Q ss_pred --HHHHHHHHcCcCCC
Q psy12100 79 --EQEISSYVEPKKPV 92 (93)
Q Consensus 79 --~~~l~~~~~~~L~~ 92 (93)
.++++++++++|+.
T Consensus 456 ~~~~~l~~~l~~~L~~ 471 (511)
T 3e7w_A 456 QLTSAIKKELAASLPA 471 (511)
T ss_dssp HHHHHHHHHHHHHSCG
T ss_pred hHHHHHHHHHHhhCch
Confidence 36788889888875
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.78 E-value=7.6e-19 Score=121.42 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=78.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT-- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-- 78 (93)
+||.+++ ++|++++.||. ||+||++|+||+|.|||+.|.++|+|.+++|++++++..++.+++++++.++...+
T Consensus 381 TGDlg~~-~dG~l~i~GR~---~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~ 456 (512)
T 3fce_A 381 TGDAGYV-ENGLLFYNGRL---DFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEF 456 (512)
T ss_dssp EEEEEEE-ETTEEEEEEEG---GGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHH
T ss_pred CCceEEe-cCCEEEEeccc---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchh
Confidence 4799999 79999999888 99999999999999999999999999999999999888888899999987664333
Q ss_pred --HHHHHHHHcCcCCCC
Q psy12100 79 --EQEISSYVEPKKPVL 93 (93)
Q Consensus 79 --~~~l~~~~~~~L~~~ 93 (93)
.++++++|+++|+.+
T Consensus 457 ~~~~~l~~~l~~~L~~~ 473 (512)
T 3fce_A 457 KLTSAIKKELNERLPNY 473 (512)
T ss_dssp HHHHHHHHHHHTTSCGG
T ss_pred hhHHHHHHHHHhhCchh
Confidence 257899999988753
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.78 E-value=4.8e-19 Score=122.53 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=70.2
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCC-CCceEEEEEEECCCCCcC-
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTL-SGEVPKAFVVKKPGVELT- 78 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~- 78 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.++|+|.++++++.+++. .++.+++++++.++....
T Consensus 384 TGDlg~~d~dG~l~~~GR~---~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~ 460 (521)
T 3l8c_A 384 TGDIGSLTEDNILLYGGRL---DFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERF 460 (521)
T ss_dssp EEEEEEECSSSCEEEEEEG---GGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGC
T ss_pred CCCEEEEeCCCeEEEeCcc---cceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccc
Confidence 4899999999999999888 99999999999999999999999999999999987654 457889999998764321
Q ss_pred ------HHHHHHHHcCcCCC
Q psy12100 79 ------EQEISSYVEPKKPV 92 (93)
Q Consensus 79 ------~~~l~~~~~~~L~~ 92 (93)
.++++++|+++|+.
T Consensus 461 ~~~~~~~~~l~~~l~~~l~~ 480 (521)
T 3l8c_A 461 DRELELTKAIKASVKDHMMS 480 (521)
T ss_dssp SSHHHHHHHHHHHSGGGSCG
T ss_pred ccchhhHHHHHHHHHhhCcc
Confidence 57899999999875
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.76 E-value=2e-18 Score=119.64 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=73.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc---
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL--- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--- 77 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.+++|++. ++..++.+++++++.++...
T Consensus 410 TGDl~~~~~~G~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~ 485 (529)
T 2v7b_A 410 SGDKYCRLPNGCYVYAGRS---DDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEI 485 (529)
T ss_dssp EEEEEEECTTSCEEEEEEG---GGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHH
T ss_pred cCceEEECCCccEEEeCcc---CCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchh
Confidence 4899999999999999887 9999999999999999999999999999999998 55567788999998766431
Q ss_pred CHHHHHHHHcCcCCCC
Q psy12100 78 TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 ~~~~l~~~~~~~L~~~ 93 (93)
..++++++++++|+.+
T Consensus 486 ~~~~l~~~l~~~L~~~ 501 (529)
T 2v7b_A 486 LAEELKAFVKDRLAPH 501 (529)
T ss_dssp HHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhhcchh
Confidence 2468999999998864
No 23
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.76 E-value=9.8e-20 Score=126.89 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=18.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|++++.||. ||+||++|+||+|.|||+.|.+||+|.+++|++++++..++.+++++++.+ ...+..
T Consensus 420 TGDlg~~~~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~ 495 (544)
T 3o83_A 420 SGDLVQRTPDGNLRVVGRI---KDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAV 495 (544)
T ss_dssp EEEEEEECTTSCEEEEEEE---C---------------------------------------------------------
T ss_pred cCCEEEEcCCCCEEEEeec---CCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHH
Confidence 4799999999999999888 999999999999999999999999999999999999888888999998765 344567
Q ss_pred HHHHHHcC-cCCC
Q psy12100 81 EISSYVEP-KKPV 92 (93)
Q Consensus 81 ~l~~~~~~-~L~~ 92 (93)
++++++++ +|+.
T Consensus 496 ~l~~~~~~~~l~~ 508 (544)
T 3o83_A 496 VLRRHLMELGIAQ 508 (544)
T ss_dssp -------------
T ss_pred HHHHHHHhCCCCc
Confidence 78888887 5764
No 24
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.75 E-value=5.2e-18 Score=119.71 Aligned_cols=87 Identities=20% Similarity=0.297 Sum_probs=79.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|+||++++.||. ||+||++|+||+|.|||+.|.+||+|.+++|++.+++..++.++++++..+ ..+..
T Consensus 415 TGDl~~~~~dG~l~~~GR~---dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~ 489 (617)
T 3rg2_A 415 SGDLISIDPEGYITVQGRE---KDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAV 489 (617)
T ss_dssp EEEEEEECTTSCEEEEEEC---SSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHH
T ss_pred cCceEEEcCCceEEEEeec---CCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHH
Confidence 4899999999999999888 999999999999999999999999999999999998888889999999875 35678
Q ss_pred HHHHHHcC-cCCC
Q psy12100 81 EISSYVEP-KKPV 92 (93)
Q Consensus 81 ~l~~~~~~-~L~~ 92 (93)
++++++++ .||.
T Consensus 490 ~l~~~l~~~~lp~ 502 (617)
T 3rg2_A 490 QVRRFLREQGIAE 502 (617)
T ss_dssp HHHHHHHTTTCCG
T ss_pred HHHHHHHhCCCcc
Confidence 89999988 5775
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.75 E-value=1.6e-19 Score=132.67 Aligned_cols=90 Identities=26% Similarity=0.399 Sum_probs=19.4
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++|++|+++|.||. ||+||++|+||+|.|||+.|.++|+|.+++|++.+++..++.+++++++.++...+.+
T Consensus 462 TGDl~~~~~dG~l~~~GR~---dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 538 (979)
T 3tsy_A 462 TGDIGLIDDDDELFIVDRL---KELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSED 538 (979)
T ss_dssp EEEEEEECTTSCEEEEEES---CC--------------------------------------------------------
T ss_pred cCCEEEEcCCceEEEecCC---CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHH
Confidence 4899999999999999888 9999999999999999999999999999999999988888899999998777667778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++|+.+
T Consensus 539 ~l~~~l~~~l~~~ 551 (979)
T 3tsy_A 539 DVKQFVSKQVVFY 551 (979)
T ss_dssp -------------
T ss_pred HHHHHHHHhcccc
Confidence 9999999998764
No 26
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.74 E-value=1e-17 Score=95.56 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=52.8
Q ss_pred cccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcC
Q psy12100 21 FLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78 (93)
Q Consensus 21 R~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (93)
|+|||||++|.||||.|||++|.+||+|.++++++++++.+++.+.+++++.++...+
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~ 59 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDD 59 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCC
T ss_pred CcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccc
Confidence 6799999999999999999999999999999999999988889999999988765443
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.72 E-value=1.6e-17 Score=125.00 Aligned_cols=88 Identities=15% Similarity=0.249 Sum_probs=79.6
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.++.+.||++++.||. ||+||++|+||+|.|||+.|.++|+|.+|+|++.+++.++..++++++... ..+.+
T Consensus 842 TGDl~~~~~dG~l~~~GR~---d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~ 916 (1304)
T 2vsq_A 842 TGDLARWLPDGTIEYAGRI---DDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAE 916 (1304)
T ss_dssp EEEEEEECTTSCEEEEEEG---GGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHH
T ss_pred cCCeEEEcCCCeEEEEcCC---CCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHH
Confidence 4899999999999999888 999999999999999999999999999999999988877888999998764 45778
Q ss_pred HHHHHHcCcCCCC
Q psy12100 81 EISSYVEPKKPVL 93 (93)
Q Consensus 81 ~l~~~~~~~L~~~ 93 (93)
+++++++++||.+
T Consensus 917 ~l~~~l~~~Lp~y 929 (1304)
T 2vsq_A 917 DVKAHLKKQLPAY 929 (1304)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHHhChHh
Confidence 9999999999863
No 28
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.71 E-value=1.7e-17 Score=94.87 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=49.6
Q ss_pred ccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCC
Q psy12100 20 KFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV 75 (93)
Q Consensus 20 gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 75 (93)
||.||||+++|.||||.+||++|.+||+|.++++++++++.+++.+++++++ ++.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~ 55 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL 55 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc
Confidence 5679999999999999999999999999999999888887777889999998 553
No 29
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.71 E-value=5.1e-18 Score=113.52 Aligned_cols=88 Identities=8% Similarity=0.127 Sum_probs=71.1
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhh---cCCCcceEEEE-eeeCCCCCceEEEEEEECCCCC
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIM---QIAGVADVAVV-GVPDTLSGEVPKAFVVKKPGVE 76 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~ 76 (93)
+||.+++|++|+++ .||. ||+||++|+||+|.|||+.|. +||.|.+++|+ +.+++..++.++++++.... .
T Consensus 232 TGDlg~~d~~g~~~-~GR~---dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~ 306 (358)
T 4gs5_A 232 TNDLVEIHGNAFQW-IGRA---DNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-E 306 (358)
T ss_dssp EEEEEEECSSEEEE-EEEG---GGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-H
T ss_pred cCCccccccCceEE-cccc---cCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-C
Confidence 48999999999554 4776 999999999999999998774 57999988876 67788788888888775433 3
Q ss_pred cCHHHHHHHHcCcCCCC
Q psy12100 77 LTEQEISSYVEPKKPVL 93 (93)
Q Consensus 77 ~~~~~l~~~~~~~L~~~ 93 (93)
...++|+++|+++|+.+
T Consensus 307 ~~~~~l~~~l~~~L~~~ 323 (358)
T 4gs5_A 307 ALTERLTAEIRSRVSTY 323 (358)
T ss_dssp HHHHHHHHHHHHHSCGG
T ss_pred cCHHHHHHHHHhhCCCC
Confidence 45678999999998753
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.70 E-value=2.2e-18 Score=120.16 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=17.5
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcC-CCcceEEEEeeeCCCCCceEEEEEEECCCCCc--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI-AGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL-- 77 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-- 77 (93)
+||.+++|++|+++|.||. ||+||++|+||+|.|||++|.++ |.+.++++++.+++..++..++.++...+...
T Consensus 408 TGDlg~~d~dG~l~~~GR~---dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~ 484 (562)
T 3ite_A 408 TGDIVRMDADSSILFLGRK---DEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG 484 (562)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------------------------------------------------------
T ss_pred cCCEEEEcCCCeEEEEccc---cCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc
Confidence 4799999999999999887 99999999999999999999998 77888888888888777665555554433221
Q ss_pred -----------CHHHHHHHHcCcCCCC
Q psy12100 78 -----------TEQEISSYVEPKKPVL 93 (93)
Q Consensus 78 -----------~~~~l~~~~~~~L~~~ 93 (93)
..++|+++|+++|+.+
T Consensus 485 ~~~~~~~~~~~~~~~l~~~~~~~L~~y 511 (562)
T 3ite_A 485 ELRWINENYKEINNSLRQACEQTLPAY 511 (562)
T ss_dssp ---------------------------
T ss_pred cccccccchhhHHHHHHHHHHhhCCcc
Confidence 1348999999998864
No 31
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.69 E-value=1.8e-17 Score=112.65 Aligned_cols=87 Identities=8% Similarity=0.074 Sum_probs=73.7
Q ss_pred CcccceeccCC------e---EEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEE
Q psy12100 1 MEEEKALSVAP------Y---KKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVK 71 (93)
Q Consensus 1 ~~~~~~~d~~g------~---~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 71 (93)
+||.++++++| + +++.||. ||+||++|+||+|.+||++|.++|+|.++++++.+++..++.++++|++
T Consensus 303 TGDl~~~~~~gc~cG~~~~~il~i~GR~---dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~ 379 (436)
T 3qov_A 303 TRDLTRILPGKCPCGRTHLRIDRIKGRS---DDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL 379 (436)
T ss_dssp EEEEECEECSCCTTCCCSCEECCCCCBS---SSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCCEEEEcCCCCCCCCCccccCcccCcc---CCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence 47999999998 6 6888777 9999999999999999999999999999999999888778899999999
Q ss_pred CCCCCcC----HHHHHHHHcCcCC
Q psy12100 72 KPGVELT----EQEISSYVEPKKP 91 (93)
Q Consensus 72 ~~~~~~~----~~~l~~~~~~~L~ 91 (93)
+ +...+ .++++++++++|+
T Consensus 380 ~-~~~~~~~~~~~~l~~~l~~~l~ 402 (436)
T 3qov_A 380 S-DLSTDNYIELEKIRRDIIRQLK 402 (436)
T ss_dssp C-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred c-CccccchhhHHHHHHHHHHHHH
Confidence 8 54443 4667776666543
No 32
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.67 E-value=1.1e-17 Score=113.78 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=73.4
Q ss_pred Ccccceecc-CCeE-----EEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 1 MEEEKALSV-APYK-----KLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 1 ~~~~~~~d~-~g~~-----~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
+||.+++|+ +|++ ++.||. ||+||++|+||+|.+||++|.+||+|.++++++++++..++.++++|++.++
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~---~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~ 384 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRS---DDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPE 384 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEG---GGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTT
T ss_pred cCCEEEEeCCCCCCccccCcccccc---CCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCC
Confidence 479999999 6986 788777 9999999999999999999999999999999998877677889999988765
Q ss_pred CC---cCHHHHHHHHcCcCC
Q psy12100 75 VE---LTEQEISSYVEPKKP 91 (93)
Q Consensus 75 ~~---~~~~~l~~~~~~~L~ 91 (93)
.. .+.++++++|+++|+
T Consensus 385 ~~~~~~~~~~l~~~l~~~l~ 404 (437)
T 2y27_A 385 TAPDTAAIQVAKQALAYDIK 404 (437)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHH
Confidence 43 234667777766553
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.67 E-value=1.8e-17 Score=112.83 Aligned_cols=88 Identities=10% Similarity=0.104 Sum_probs=72.4
Q ss_pred CcccceeccC-CeE-----EEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECC-
Q psy12100 1 MEEEKALSVA-PYK-----KLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP- 73 (93)
Q Consensus 1 ~~~~~~~d~~-g~~-----~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~- 73 (93)
+||.+++|++ |++ ++.||. ||+||++|+||+|.+||++|.++|+|.++++++++++..++.+++++++.+
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~---~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~ 386 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRS---DDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSE 386 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEES---SCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHH
T ss_pred cCCEEEEcCCCCCCccccCcccccc---CCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCc
Confidence 4799999999 987 788777 999999999999999999999999999999999887766788999999875
Q ss_pred -CC---CcCHHHHHHHHcCcCC
Q psy12100 74 -GV---ELTEQEISSYVEPKKP 91 (93)
Q Consensus 74 -~~---~~~~~~l~~~~~~~L~ 91 (93)
+. ..+.++++++|+++|+
T Consensus 387 ~~~~~~~~~~~~l~~~l~~~l~ 408 (443)
T 2y4o_A 387 AAASVTDGERAALARELQHRIK 408 (443)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHH
Confidence 21 2334567777666543
No 34
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.65 E-value=2.8e-17 Score=114.93 Aligned_cols=85 Identities=7% Similarity=-0.016 Sum_probs=70.9
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHh-hcCCCcc--eEEEEeeeCCCCCceEEEEEEECCCC--
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENII-MQIAGVA--DVAVVGVPDTLSGEVPKAFVVKKPGV-- 75 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~-- 75 (93)
+||.+++| +|+++|.||. ||+||++|+||+|.|||+.| ..+|.|. +|+|++++++. ++.+++++++.++.
T Consensus 440 TGDlg~~d-dG~l~~~GR~---dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~ 514 (590)
T 3kxw_A 440 TGDLGFLH-ENELYVTGRI---KDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD 514 (590)
T ss_dssp EEEEEEEE-TTEEEEEEES---SCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC
T ss_pred cCcEEEEE-CCEEEEEcCc---cceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc
Confidence 47999999 9999999888 99999999999999999999 8899998 79999998875 67788888887654
Q ss_pred CcCHHHHHHHHcCcC
Q psy12100 76 ELTEQEISSYVEPKK 90 (93)
Q Consensus 76 ~~~~~~l~~~~~~~L 90 (93)
..+.+++.++|+++|
T Consensus 515 ~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 515 DVAQDNLFNEIFELV 529 (590)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 234566777766554
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.64 E-value=2.2e-16 Score=111.85 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=58.0
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEE
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVK 71 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 71 (93)
+||.+++|+||++++.||. ||+||++|+||+|.|||+.|.+||+|.+|+|++.+++..+.. +++++.
T Consensus 400 TGDl~~~~~dG~l~~~GR~---dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~ 466 (620)
T 4dg8_A 400 TGDRARYDEQGRLRFIGRG---DGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTG 466 (620)
T ss_dssp EEEEEEECTTSCEEEEECS---SSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEE
T ss_pred CCCEEEECCCCeEEEEccC---CCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEec
Confidence 4799999999999999887 999999999999999999999999999999999888744444 444443
No 36
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.58 E-value=1.5e-15 Score=105.79 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=64.7
Q ss_pred CcccceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHH
Q psy12100 1 MEEEKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80 (93)
Q Consensus 1 ~~~~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (93)
+||.+++ +||++++.||. ||+||++|+||+|.|||+.|.+||+|.++++++..++.. ...+++...........
T Consensus 443 TGDl~~~-~dG~l~~~GR~---dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~~~~~~~ 516 (576)
T 3gqw_A 443 TGDLGYL-LDGYLYVTGRI---KDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRISDEERRG 516 (576)
T ss_dssp EEEEEEE-ETTEEEEEEET---TTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCCCHHHHH
T ss_pred ccceEEE-ECCEEEEEecC---cceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCc--cEEEEEEEecCchhHHH
Confidence 4799999 69999999888 999999999999999999999999999988888877643 34444444433333345
Q ss_pred HHHHHHcCcC
Q psy12100 81 EISSYVEPKK 90 (93)
Q Consensus 81 ~l~~~~~~~L 90 (93)
++.++++++|
T Consensus 517 ~l~~~l~~~l 526 (576)
T 3gqw_A 517 QLIHALAARI 526 (576)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=96.17 E-value=0.0022 Score=45.97 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=28.4
Q ss_pred cCCeEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100 9 VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 9 ~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
....+.|+||. +++|++.|.++++.+||+++..
T Consensus 426 ~~p~i~~~gR~---~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 426 SAPQFHFVRRK---NVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp TEEEEEEEEET---TCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCcEEEEEEec---CCeEEccccCCCHHHHHHHHHH
Confidence 34677788777 9999999999999999998873
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.01 E-value=0.0034 Score=44.78 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=28.4
Q ss_pred CCeEEEeeeeccccceeecCCeeechHHHHHHhhcC
Q psy12100 10 APYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI 45 (93)
Q Consensus 10 ~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~ 45 (93)
...+.|+||. +++|++.|.++++.+||+++.+.
T Consensus 415 ~p~i~f~gR~---~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 415 APQFKFVRRE---NVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEEEEEEEET---TEEECSSSCCEEHHHHHHHHHHC
T ss_pred CcEEEEEEec---CCEEEeeeeECCHHHHHHHHHHH
Confidence 4577788777 99999999999999999998753
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=94.37 E-value=0.027 Score=40.25 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=26.7
Q ss_pred CeEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100 11 PYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 11 g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
..+.|+||. ++++++.|.++++.+||+++.+
T Consensus 423 p~~~~~gR~---~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 423 PQLKFICRR---NLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp EEEEEEEET---TCCBCSSSCCBCHHHHHHHHHH
T ss_pred cEEEEEeec---CCeEEeeeeECCHHHHHHHHHH
Confidence 356677776 9999999999999999998875
No 40
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=90.65 E-value=0.97 Score=23.40 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=30.5
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L 90 (93)
..++++.|.+.|.|.+|..+.-.. -..+.+... +.+++.+++.+.|
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~~-----d~~~l~~~i~~~l 60 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEY-----DLIVKVETD-----TLKDLDQFITEKI 60 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSC-----SEEEEEEES-----SHHHHHHHHHTTG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccC-----CEEEEEEEC-----CHHHHHHHHHHHh
Confidence 478999999999999998764322 244444443 5666777665443
No 41
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=88.58 E-value=1.6 Score=23.00 Aligned_cols=47 Identities=26% Similarity=0.178 Sum_probs=30.2
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcCC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L~ 91 (93)
..++.+.|.++|.|.+|..+.-.. -..+.+... +.+++.+++.++|.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~-----D~ll~v~~~-----d~~~l~~~l~~~l~ 61 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPY-----DLVALVRLK-----DVEELDDVVTQGIL 61 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSS-----SEEEEEEES-----SGGGHHHHCCCCCT
T ss_pred HHHHHHHHhcCCCeEEEEEeecCC-----CEEEEEEEC-----CHHHHHHHHHHhcc
Confidence 578889999999999998874322 244444443 34556666654443
No 42
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=84.61 E-value=1.9 Score=22.03 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=27.9
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP 88 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 88 (93)
..++.+.|.++|.|.+|..+.-. .-..+.+.. .+.+++.+.+.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-----~d~l~~v~~-----~d~~~l~~~~~~ 58 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV-----YDIVVKVEA-----DSMDKLKDFVTN 58 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS-----CSEEEEEEC-----SSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEecc-----CCEEEEEEE-----CCHHHHHHHHHH
Confidence 37889999999999998876322 223444443 245556655543
No 43
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=72.59 E-value=11 Score=21.46 Aligned_cols=46 Identities=7% Similarity=-0.120 Sum_probs=29.6
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L 90 (93)
..++.+.+.++|.|.+|+.+.. ..-..+.+... +.+++.+++.+.|
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG-----~~d~~~~v~~~-----d~~~l~~~l~~~l 127 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTG-----HYSIFIKVMCR-----SIDALQHVLINKI 127 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESS-----SCSEEEEEEES-----CHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcCeEEEEEEec-----ccCEEEEEEEC-----CHHHHHHHHHHHh
Confidence 4678889999999999988732 22244444433 5566666665443
No 44
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=70.35 E-value=5.6 Score=23.24 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=31.0
Q ss_pred ceeccCCeEEEeee---eccccceeecCCeeechHHHHHHhhcC
Q psy12100 5 KALSVAPYKKLAGG---VKFLETIPRNPAGKVSPTELENIIMQI 45 (93)
Q Consensus 5 ~~~d~~g~~~~~GR---~gR~~d~I~~~G~~v~p~eiE~~l~~~ 45 (93)
..+|.+|-|.+..+ .|+...+.+.+..+.+..+||.++...
T Consensus 87 f~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a 130 (151)
T 3dqg_A 87 FDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEA 130 (151)
T ss_dssp EEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHH
T ss_pred EEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHH
Confidence 35789999999766 355556666666899999999988753
No 45
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=67.96 E-value=17 Score=21.76 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=32.7
Q ss_pred hHHHHHHhhcCCCcceEEEE-eeeCCCCC-ceEEEEEEECCCCCcCH--HHHHHHHcCcCCC
Q psy12100 35 PTELENIIMQIAGVADVAVV-GVPDTLSG-EVPKAFVVKKPGVELTE--QEISSYVEPKKPV 92 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~-~~~~~~~~-~~~~~~v~~~~~~~~~~--~~l~~~~~~~L~~ 92 (93)
-.|++..|.++++|..|-|. ..|..... ....+++.++++...+. ..|+..+...+|.
T Consensus 92 egELartI~~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~l~~~q~~I~~LVa~SV~g 153 (171)
T 1yj7_A 92 EQDIERLLSKIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDD 153 (171)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEC-------CEEEEEEEECTTCCCGGGHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHcCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCCCcHhHHHHHHHHHHhcCC
Confidence 45688899999999888773 34433221 23334445666654443 3566666665543
No 46
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=65.27 E-value=15 Score=20.83 Aligned_cols=20 Identities=20% Similarity=0.013 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCcceEEEEe
Q psy12100 36 TELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v~~ 55 (93)
.++.+.+.++|.|.+|..+.
T Consensus 83 ~~~~~~l~~~peV~~~~~vt 102 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGV 102 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEeEec
Confidence 46777888899999998763
No 47
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=58.23 E-value=20 Score=19.33 Aligned_cols=57 Identities=5% Similarity=0.010 Sum_probs=32.0
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCc-C----HHHHHHHHcCcCC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL-T----EQEISSYVEPKKP 91 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~----~~~l~~~~~~~L~ 91 (93)
..+|++.+.+.|+|..+-=+-....+....+.+-+++.+..+. . ..++.+.++++++
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4567888889999987765544443333445566666554332 1 2344555554443
No 48
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=57.86 E-value=13 Score=22.37 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=30.1
Q ss_pred ceeccCCeEEEeee---eccccceeecCCeeechHHHHHHhhcC
Q psy12100 5 KALSVAPYKKLAGG---VKFLETIPRNPAGKVSPTELENIIMQI 45 (93)
Q Consensus 5 ~~~d~~g~~~~~GR---~gR~~d~I~~~G~~v~p~eiE~~l~~~ 45 (93)
..+|.+|-|.+..+ .|+...+.+.+....+..||+.++...
T Consensus 107 f~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a 150 (182)
T 3n8e_A 107 FDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNA 150 (182)
T ss_dssp EEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHH
T ss_pred EEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHH
Confidence 34788999998765 355455555566889999999988653
No 49
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=56.38 E-value=14 Score=21.43 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=28.5
Q ss_pred ceeccCCeEEEeeee---ccccceeecCC-eeechHHHHHHhhc
Q psy12100 5 KALSVAPYKKLAGGV---KFLETIPRNPA-GKVSPTELENIIMQ 44 (93)
Q Consensus 5 ~~~d~~g~~~~~GR~---gR~~d~I~~~G-~~v~p~eiE~~l~~ 44 (93)
..+|.+|-|.+..+- |+...+.+.+. .+.+..+|+.++..
T Consensus 87 f~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~ 130 (152)
T 3h0x_A 87 FALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEE 130 (152)
T ss_dssp EEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHH
Confidence 347899999997652 45445554444 57899999998865
No 50
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=56.34 E-value=26 Score=20.07 Aligned_cols=46 Identities=7% Similarity=-0.077 Sum_probs=28.5
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L 90 (93)
..++++.+.++|.|.+|+.+.- ..-..+.+... +.+++.+++.+.|
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG-----~~d~~~~v~~~-----d~~~l~~~l~~~l 130 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTG-----ETDYLLQAFFT-----DMNAFSHFVLDTL 130 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESS-----SCSEEEEEEES-----SHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhhEeeeecC-----CCCEEEEEEEC-----CHHHHHHHHHHHh
Confidence 4677888899999999887532 12234444432 5566666664443
No 51
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=54.66 E-value=20 Score=18.52 Aligned_cols=41 Identities=5% Similarity=0.011 Sum_probs=24.4
Q ss_pred chHHHHHHhhcC--CCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 34 SPTELENIIMQI--AGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 34 ~p~eiE~~l~~~--~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
...+|++.+.++ |+|..+-=+-...-+....+.+-+++.+.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~ 53 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGD 53 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCC
Confidence 356777888888 99987665444332222344455666544
No 52
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=53.71 E-value=21 Score=20.27 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=16.7
Q ss_pred hHHHHHHhhcCCCcceEEEE
Q psy12100 35 PTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~ 54 (93)
..++.+.+.++|.|.+|+.+
T Consensus 80 ~~~~~~~l~~~p~V~~~~~~ 99 (151)
T 2cyy_A 80 YSEVASNLAKYPEIVEVYET 99 (151)
T ss_dssp HHHHHHHHHTCTTEEEEEEC
T ss_pred HHHHHHHHhcCCCeeEeeEe
Confidence 36778889999999998875
No 53
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=53.61 E-value=16 Score=22.66 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=29.1
Q ss_pred ceeccCCeEEEeee---eccccceeecCCeeechHHHHHHhhc
Q psy12100 5 KALSVAPYKKLAGG---VKFLETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 5 ~~~d~~g~~~~~GR---~gR~~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
..+|.+|-|.+... .|+...+.+.+....+..||+.++..
T Consensus 88 f~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~ 130 (219)
T 4e81_A 88 FDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRD 130 (219)
T ss_dssp EEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHH
T ss_pred EEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHH
Confidence 35788999998765 25545555555566999999998865
No 54
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.37 E-value=4.9 Score=22.04 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=18.2
Q ss_pred cceeecCCeee----chHHHHHHhhcC
Q psy12100 23 ETIPRNPAGKV----SPTELENIIMQI 45 (93)
Q Consensus 23 ~d~I~~~G~~v----~p~eiE~~l~~~ 45 (93)
+|+||-+|+++ +|+++.+.+...
T Consensus 19 kdiikkngfkvrtvrspqelkdsieel 45 (134)
T 2l69_A 19 KDIIKKNGFKVRTVRSPQELKDSIEEL 45 (134)
T ss_dssp HHHHHHTTCEEEEECSHHHHHHHHHHH
T ss_pred HHHHHhcCceEEEecCHHHHHHHHHHH
Confidence 78999999987 788877766553
No 55
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=50.87 E-value=21 Score=20.74 Aligned_cols=41 Identities=5% Similarity=0.156 Sum_probs=26.6
Q ss_pred ceeccCCeEEEeeee---ccccceeecCC-eeechHHHHHHhhcC
Q psy12100 5 KALSVAPYKKLAGGV---KFLETIPRNPA-GKVSPTELENIIMQI 45 (93)
Q Consensus 5 ~~~d~~g~~~~~GR~---gR~~d~I~~~G-~~v~p~eiE~~l~~~ 45 (93)
..+|.+|-|.+..+- |+...+.+.+. .+.+..+|+.++...
T Consensus 87 f~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a 131 (152)
T 3dob_A 87 FNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEA 131 (152)
T ss_dssp EEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHH
T ss_pred EEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 357899999997652 45444554443 469999999988653
No 56
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=50.39 E-value=32 Score=19.31 Aligned_cols=21 Identities=43% Similarity=0.411 Sum_probs=16.8
Q ss_pred chHHHHHHhhcCCCcceEEEE
Q psy12100 34 SPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~ 54 (93)
...++.+.+.++|.|.+|..+
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~ 97 (150)
T 2pn6_A 77 YHVELGNKLAQIPGVWGVYFV 97 (150)
T ss_dssp HHHHHHHHHHTSTTEEEEEEC
T ss_pred HHHHHHHHHhcCchhhhhhhh
Confidence 346778889999999888864
No 57
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=47.15 E-value=18 Score=16.72 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=13.6
Q ss_pred eeechHHHHHHhhcCCC
Q psy12100 31 GKVSPTELENIIMQIAG 47 (93)
Q Consensus 31 ~~v~p~eiE~~l~~~~~ 47 (93)
.+.||.|||+.-...|.
T Consensus 18 vrlypdeiealksrvpa 34 (53)
T 2kke_A 18 VRLYPDEIEALKSRVPA 34 (53)
T ss_dssp EEECHHHHHHHHTTCCS
T ss_pred EEeChhHHHHHHhcCCC
Confidence 57899999998766664
No 58
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=46.02 E-value=42 Score=21.22 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=22.8
Q ss_pred chHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCC
Q psy12100 34 SPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 74 (93)
...+|++.+.++|+|.+..=+-....+......+.++.+++
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~ 247 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDS 247 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTT
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCC
Confidence 34567778888999876654433332222334445555544
No 59
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.81 E-value=18 Score=20.89 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=16.7
Q ss_pred hHHHHHHhhcCCCcceEEEE
Q psy12100 35 PTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~ 54 (93)
..++.+.|.++|.|.+|+.+
T Consensus 79 ~~~~~~~l~~~peV~~~~~v 98 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRM 98 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEeeec
Confidence 46788889999999998875
No 60
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=43.26 E-value=44 Score=19.53 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=16.8
Q ss_pred hHHHHHHhhcCCCcceEEEE
Q psy12100 35 PTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~ 54 (93)
..++.+.|.++|.|.+|+.+
T Consensus 100 ~~~v~~~l~~~peV~~~~~v 119 (171)
T 2e1c_A 100 YSEVASNLAKYPEIVEVYET 119 (171)
T ss_dssp HHHHHHHHHTSTTEEEEEEC
T ss_pred HHHHHHHHhcCcCeEEEEEe
Confidence 36788889999999998875
No 61
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=40.87 E-value=45 Score=18.34 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=26.9
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcCcC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~L 90 (93)
..++.+.+.++|.|.+|+.+. +..-..+.+... +.+++.+++.+.+
T Consensus 77 ~~~~~~~l~~~~~v~~~~~~~-----G~~d~~~~v~~~-----d~~~l~~~~~~~l 122 (141)
T 1i1g_A 77 LFEVAEKLKEYDFVKELYLSS-----GDHMIMAVIWAK-----DGEDLAEIISNKI 122 (141)
T ss_dssp HHHHHHHHHHSTTEEEECCCS-----SSSSEEEEEEES-----SHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCeEEEEEec-----CCCCEEEEEEEC-----CHHHHHHHHHHHh
Confidence 466777888899998886542 122234444432 4566666664433
No 62
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=40.33 E-value=49 Score=20.68 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.8
Q ss_pred chHHHHHHhhcCCCcceEEEEe
Q psy12100 34 SPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
.|.+++..|.+.|+|-+.-.+.
T Consensus 187 ~p~~l~~~l~~i~GVve~GlF~ 208 (226)
T 2pjm_A 187 DAIELEKEINNIPGVVENGIFT 208 (226)
T ss_dssp CHHHHHHHHHTSTTEEEESEEC
T ss_pred CHHHHHHHhcCCCCEEeecCcc
Confidence 6999999999999998776653
No 63
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=40.05 E-value=58 Score=19.34 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=34.6
Q ss_pred hHHHHHHhhcCCCcceEEEE-eeeCC-C----CCceEEE--EEEECCCCC--cCHHHHHHHHcCcCCC
Q psy12100 35 PTELENIIMQIAGVADVAVV-GVPDT-L----SGEVPKA--FVVKKPGVE--LTEQEISSYVEPKKPV 92 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~-~~~~~-~----~~~~~~~--~v~~~~~~~--~~~~~l~~~~~~~L~~ 92 (93)
-.|++..|.++++|..|-|. ..|.. . ....+.| ++.++++.. .....|+..+...+|.
T Consensus 90 e~ELartI~~i~gV~~ArVhl~lP~~~~~f~~~~~~~sASV~l~~~~g~l~~~qv~~I~~LVa~SV~g 157 (170)
T 2y9j_Y 90 EQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFAD 157 (170)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEECCCCCBTTBCCCCEEEEEEEEECTTCCCGGGHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHcCCCeeEEEEEEEcCCCcCcccccCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 35788899999999888773 34443 1 1223444 444566642 1236777777766554
No 64
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=39.24 E-value=1.9 Score=22.30 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=20.4
Q ss_pred ceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100 5 KALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 5 ~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
+.+|++||+... . .++... ..+++.+||.++..
T Consensus 39 ~~LD~~GYL~~~--l---~eia~~--l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 39 NYLNEKGFLSKS--V---EEISDV--LRCSVEELEKVRQK 71 (76)
T ss_dssp HHCTTSSTTCCC--H---HHHHHH--HTSCHHHHHHHHHH
T ss_pred HhcCCCCCCCCC--H---HHHHHH--cCCCHHHHHHHHHH
Confidence 357888888653 1 222222 23889999988764
No 65
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=38.90 E-value=58 Score=18.98 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.2
Q ss_pred hHHHHHHhhcCCCcceEE
Q psy12100 35 PTELENIIMQIAGVADVA 52 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~ 52 (93)
..++.+.+.++|.|.+|.
T Consensus 97 ~~~~~~~l~~~peV~~~~ 114 (171)
T 2ia0_A 97 ISYISSTLSALPGVLFVA 114 (171)
T ss_dssp HHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHCCCCeEEEE
Confidence 467778888999999998
No 66
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=38.84 E-value=19 Score=14.59 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=10.7
Q ss_pred eechHHHHHHhhcCC
Q psy12100 32 KVSPTELENIIMQIA 46 (93)
Q Consensus 32 ~v~p~eiE~~l~~~~ 46 (93)
-.+|.+||+-+.+-|
T Consensus 12 mlspddi~qw~s~dp 26 (28)
T 2b3g_B 12 MLSPDDIEQWFTEDP 26 (28)
T ss_dssp GCCHHHHHHHHHC--
T ss_pred hcChHHHHHHhhcCC
Confidence 468999998887755
No 67
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=37.87 E-value=47 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=19.2
Q ss_pred echHHHHHHhhcCCCcceEEEEe
Q psy12100 33 VSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
-.|.+++..|.+.|+|-+.-.+.
T Consensus 210 ~dp~~l~~~l~~i~GVVe~GLF~ 232 (255)
T 3hhe_A 210 LQPKLLSEALLAIPGVVEHGLFL 232 (255)
T ss_dssp SCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCHHHHHHHHhcCCCEeeecccc
Confidence 47999999999999998766653
No 68
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=37.42 E-value=16 Score=21.56 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=22.3
Q ss_pred eeeccccceeecCCeeechHHHHHHhhcCCCc
Q psy12100 17 GGVKFLETIPRNPAGKVSPTELENIIMQIAGV 48 (93)
Q Consensus 17 GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v 48 (93)
...|| ||+||+.|.-++..++...-.=.|.+
T Consensus 50 ~k~G~-KDIIKIe~~~l~~~e~~~LaliaP~a 80 (149)
T 2yww_A 50 KKKGK-KDILKIEGIELKKEDVDKISLISPDV 80 (149)
T ss_dssp TTTEE-EEEEEEETCCCCHHHHHHHHHHCTTC
T ss_pred cCCCc-CCEEEECCcccChhhhheeEEECCCC
Confidence 34566 99999999998888887753333554
No 69
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=36.48 E-value=19 Score=21.71 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=22.1
Q ss_pred eeeccccceeecCCeeechHHHHHHhhcCCCc
Q psy12100 17 GGVKFLETIPRNPAGKVSPTELENIIMQIAGV 48 (93)
Q Consensus 17 GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v 48 (93)
...|| ||+||+.|.-++..++...-.=.|.+
T Consensus 59 ~k~Gk-KDIIKIE~~~l~~~e~~~LaliAP~a 89 (168)
T 1pg5_B 59 KKMGK-KDIVKIEDKEISDTEANLITLIAPTA 89 (168)
T ss_dssp TTTEE-EEEEEEETCCCCHHHHHHHTTTCTTC
T ss_pred cCCCc-CCEEEECCcccChhHcceeEEECCCC
Confidence 34566 99999999998888877653333554
No 70
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=36.39 E-value=11 Score=22.29 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=21.5
Q ss_pred eeeccccceeecCCeeechHHHHHHhhcCCCc
Q psy12100 17 GGVKFLETIPRNPAGKVSPTELENIIMQIAGV 48 (93)
Q Consensus 17 GR~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v 48 (93)
+..|| ||+||+.|.-.+..++...-.=.|.+
T Consensus 51 ~k~Gk-KDIIKIe~~~l~~~e~~~LaliaP~a 81 (153)
T 4fyy_B 51 GEMGR-KDLIKIENTFLSEDQVDQLALYAPQA 81 (153)
T ss_dssp TTTEE-EEEEEEETCCCCHHHHHTTTTTCTTC
T ss_pred ccCCc-CCEEEECCcccCHhHhceEEEECCCC
Confidence 55677 99999999887877776532223554
No 71
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=36.26 E-value=57 Score=18.74 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=22.1
Q ss_pred cccceeecCCeeechHHHHHHhhcCCCcc
Q psy12100 21 FLETIPRNPAGKVSPTELENIIMQIAGVA 49 (93)
Q Consensus 21 R~~d~I~~~G~~v~p~eiE~~l~~~~~v~ 49 (93)
..+|+|++.-..+++.++.+.+.+ |...
T Consensus 5 ~~~d~i~it~e~l~~~~~~~~v~~-p~~G 32 (135)
T 4ap8_A 5 KSKDVINFTAEKLSVDEVSQLVIS-PLCG 32 (135)
T ss_dssp CCCEEEEEESSCCCHHHHHHHTCC-TTCS
T ss_pred CCCCeEEEEcCCCCHHHHHHHhcC-CCCC
Confidence 348899999999999999988765 5543
No 72
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=35.74 E-value=5.5 Score=24.33 Aligned_cols=35 Identities=6% Similarity=0.073 Sum_probs=26.5
Q ss_pred eeccCCeEEEeeeeccccceeec--C--CeeechHHHHHHhhcCCC
Q psy12100 6 ALSVAPYKKLAGGVKFLETIPRN--P--AGKVSPTELENIIMQIAG 47 (93)
Q Consensus 6 ~~d~~g~~~~~GR~gR~~d~I~~--~--G~~v~p~eiE~~l~~~~~ 47 (93)
.+|++||+.+ +++++. . +.++..++|+.++.+.+.
T Consensus 23 ~ld~~G~v~v-------~~LL~~~~~~~~~~~t~~~l~~vV~~~~K 61 (186)
T 1wfx_A 23 RLTREGWARV-------SEVVEGLRKAGWSWVEEWHIVGVALHDPK 61 (186)
T ss_dssp CCCTTCCEEH-------HHHHHHHHHTTCTTCCHHHHHHHHHHCSS
T ss_pred ccCCCCCEEH-------HHHHhhhhhcccCCCCHHHHHHHHhcCCC
Confidence 4788999888 555542 2 678999999999987654
No 73
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=35.08 E-value=57 Score=20.39 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.4
Q ss_pred echHHHHHHhhcCCCcceEEEEe
Q psy12100 33 VSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
-.|.+++..|.+.|+|-+.-.+.
T Consensus 182 ~~p~~l~~~l~~i~GVVe~GlF~ 204 (225)
T 3l7o_A 182 PDPIAFGNMLDHQVGVVEHGLFN 204 (225)
T ss_dssp SCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCHHHHHHHHhcCCCeeeeeeec
Confidence 47999999999999998776663
No 74
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=34.56 E-value=16 Score=21.65 Aligned_cols=31 Identities=0% Similarity=0.087 Sum_probs=19.2
Q ss_pred eeccccceeecCCeeechHHHHHHhhcCCCcc
Q psy12100 18 GVKFLETIPRNPAGKVSPTELENIIMQIAGVA 49 (93)
Q Consensus 18 R~gR~~d~I~~~G~~v~p~eiE~~l~~~~~v~ 49 (93)
..|| ||+||+.|.-++..++...-.=.|.+.
T Consensus 51 k~G~-KDIIKIe~~~l~~~e~~~LaliaP~aT 81 (153)
T 2be7_D 51 DGNA-KDLIKVENTEITKSQANQLALLAPNAT 81 (153)
T ss_dssp -----CEEEEEESCCCCHHHHGGGGGTCTTCC
T ss_pred CCCc-CCEEEECCcccChhhhheeEEECCCCE
Confidence 4466 999999999888877765433235543
No 75
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=33.55 E-value=36 Score=16.12 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=26.3
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHc
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 87 (93)
...||..|.+.|+|..+.+--. . . .+.|..++. ..+..++.+.+.
T Consensus 17 ~~~ie~~l~~~~gv~~~~v~~~-~----~--~~~v~~~~~-~~~~~~i~~~i~ 61 (74)
T 3dxs_X 17 SNSVEAALMNVNGVFKASVALL-Q----N--RADVVFDPN-LVKEEDIKEEIE 61 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEEGG-G----T--EEEEEECTT-TCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEEec-C----C--EEEEEECCC-CCCHHHHHHHHH
Confidence 4679999999999976555311 1 1 233343332 245666666654
No 76
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=33.51 E-value=44 Score=16.20 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=11.8
Q ss_pred eeechHHHHHHhhcC
Q psy12100 31 GKVSPTELENIIMQI 45 (93)
Q Consensus 31 ~~v~p~eiE~~l~~~ 45 (93)
..+.+.+++..|.+.
T Consensus 25 ~~v~~~~L~~~l~~~ 39 (74)
T 2jwk_A 25 EGLTEEMVTQLSRQE 39 (74)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 778889998887653
No 77
>2vga_A Protein A41, A41; immunomodulator, chemokine binding protein, glycoprotein, VI protein, early protein; 1.9A {Vaccinia virus}
Probab=32.86 E-value=26 Score=20.46 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=23.5
Q ss_pred EEEeeeeccccceeecCCeeechHHHHHH
Q psy12100 13 KKLAGGVKFLETIPRNPAGKVSPTELENI 41 (93)
Q Consensus 13 ~~~~GR~gR~~d~I~~~G~~v~p~eiE~~ 41 (93)
+|+..-++..+|.+|.+|.+.-|.+...+
T Consensus 116 iylkcevdktkdfmktngnrlkprdfktv 144 (207)
T 2vga_A 116 IYLKCEVDKTKDFMKTNGNRLKPRDFKTV 144 (207)
T ss_dssp EEEEECCCTTSCBCCCSSCSCCGGGEEEC
T ss_pred eEEEeeecchHHHHhccCCccCcccCCcC
Confidence 56777788899999999999888875443
No 78
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.07 E-value=43 Score=15.52 Aligned_cols=44 Identities=30% Similarity=0.254 Sum_probs=26.0
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHc
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 87 (93)
...||..|.+.|+|..+.+-- .. .. +.+.. + ...+..++.+.+.
T Consensus 17 ~~~i~~~l~~~~gv~~~~v~~----~~-~~--~~v~~-~-~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 17 ASSIERAIAKVPGVQSCQVNF----AL-EQ--AVVSY-H-GETTPQILTDAVE 60 (69)
T ss_dssp HHHHHHHHHTSTTEEEEEEET----TT-TE--EEEEE-C-TTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEEEe----cC-CE--EEEEE-C-CCCCHHHHHHHHH
Confidence 467899999999997655421 11 12 22333 2 2346677776664
No 79
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=29.54 E-value=7 Score=22.34 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=21.4
Q ss_pred ceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100 5 KALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 5 ~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
+.+|++||+... . .++...- .+++.+||.++..
T Consensus 30 ~~LD~~GYL~~~--l---~eia~~l--~~~~~eve~vL~~ 62 (130)
T 2k9m_A 30 NYLNEKGFLSKS--V---EEISDVL--RCSVEELEKVRQK 62 (130)
T ss_dssp TSBCTTSSBSSC--H---HHHHHHT--TCCHHHHHHHHHH
T ss_pred HhcCCCCCCCCC--H---HHHHHHc--CCCHHHHHHHHHH
Confidence 457889988643 1 2233222 3899999998765
No 80
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=29.43 E-value=90 Score=19.42 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.5
Q ss_pred echHHHHHHhhcCCCcceEEEEe
Q psy12100 33 VSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
-.|.+++..|.+.|+|-+.-.+.
T Consensus 188 ~~p~~l~~~l~~i~GVve~GlF~ 210 (229)
T 1lk5_A 188 DDPLDMEIELNTIPGVIENGIFA 210 (229)
T ss_dssp SCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCHHHHHHHHhcCCCcceecccc
Confidence 37999999999999998776663
No 81
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=29.18 E-value=69 Score=16.97 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=19.8
Q ss_pred echHHHHHHhhcCCCcceEEEEeeeCCCC
Q psy12100 33 VSPTELENIIMQIAGVADVAVVGVPDTLS 61 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ 61 (93)
.-..+|++.|.+.|+|.++-+--..++.+
T Consensus 59 ~l~~~i~~al~~l~gv~~V~V~l~~~p~W 87 (103)
T 3cq1_A 59 SLGEAVRQALSRLPGVEEVEVEVTFEPPW 87 (103)
T ss_dssp HHHHHHHHHHHTSTTCCEEEEEECCSSCC
T ss_pred HHHHHHHHHHHhCCCceeEEEEEecCCCC
Confidence 34568899999999998766543444443
No 82
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=28.91 E-value=70 Score=16.93 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=18.8
Q ss_pred chHHHHHHhhcCCCcceEEEEeeeCCCC
Q psy12100 34 SPTELENIIMQIAGVADVAVVGVPDTLS 61 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~ 61 (93)
-..++++.|.+.|+|.++-+--..++.+
T Consensus 61 l~~~i~~al~~l~gv~~v~V~l~~~p~W 88 (103)
T 1uwd_A 61 ILSDAEEAIKKIEGVNNVEVELTFDPPW 88 (103)
T ss_dssp HHHHHHHHHHTSSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHHhCCCcceEEEEEecCCCC
Confidence 3467888898899998765543334433
No 83
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=28.83 E-value=32 Score=20.77 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=20.7
Q ss_pred eeechHHHHHHhh-cCCCcceEEEE
Q psy12100 31 GKVSPTELENIIM-QIAGVADVAVV 54 (93)
Q Consensus 31 ~~v~p~eiE~~l~-~~~~v~~~~v~ 54 (93)
..+.+.++++.|. ++|.|+.+.|-
T Consensus 32 ~~vd~~~i~~~l~~~~P~V~~a~V~ 56 (220)
T 2vh1_A 32 MTQDVNIIQTQIEQRLPWIKQVSVR 56 (220)
T ss_dssp GGSCHHHHHHHHHHHCTTEEEEEEE
T ss_pred EEECHHHHHHHHHhcCCCEEEEEEE
Confidence 4678999999999 99999888775
No 84
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=28.62 E-value=53 Score=19.64 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=22.2
Q ss_pred eeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhcC
Q psy12100 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQI 45 (93)
Q Consensus 6 ~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~~ 45 (93)
.+|.+|.+...|+. ++.-......+...++++.|.+.
T Consensus 149 liD~~G~i~~~g~~---d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 149 LYDRERRLVYHGQF---DDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp EECTTCBEEEEECS---SSCCTTSCCCCCCHHHHHHHHHH
T ss_pred EECCCCcEEEeccc---cccccccccccCHHHHHHHHHHH
Confidence 46777777766655 44322233456677888777653
No 85
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=27.93 E-value=35 Score=21.35 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=19.9
Q ss_pred eeechHHHHHHhhcCCCcceEEEE
Q psy12100 31 GKVSPTELENIIMQIAGVADVAVV 54 (93)
Q Consensus 31 ~~v~p~eiE~~l~~~~~v~~~~v~ 54 (93)
..+.+.++++.|.++|.|+++.|-
T Consensus 59 ~~vd~~~i~~~l~~~PwV~~a~V~ 82 (255)
T 2vh2_A 59 MTQDVNIIQQQIERLPWIQQASVR 82 (255)
T ss_dssp TSCHHHHHHHHTSCCSSEEEEEEE
T ss_pred EEEcHHHHHHHHHcCCCeeEEEEE
Confidence 357888999999999999888775
No 86
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=27.76 E-value=91 Score=19.28 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=19.6
Q ss_pred echHHHHHHhhcCCCcceEEEEe
Q psy12100 33 VSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
-.|.++|..|.+.|+|-+.-.+.
T Consensus 177 ~~p~~l~~~l~~i~GVve~GlF~ 199 (219)
T 1o8b_A 177 LDPIAMENAINAIPGVVTVGLFA 199 (219)
T ss_dssp SCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCHHHHHHHHhcCCCcceeeeEe
Confidence 37999999999999998877664
No 87
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=27.31 E-value=1e+02 Score=19.42 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.3
Q ss_pred echHHHHHHhhcCCCcceEEEEe
Q psy12100 33 VSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
-.|.+++..|.+.|+|-+.-.+.
T Consensus 194 ~dp~~l~~~l~~i~GVVe~GlF~ 216 (239)
T 3uw1_A 194 DDPRALEAAINGWPGVVTVGLFA 216 (239)
T ss_dssp SCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCHHHHHHHHcCCCCEEeecCCc
Confidence 47999999999999998766653
No 88
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=27.30 E-value=67 Score=16.22 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=19.3
Q ss_pred cceeecCCeee---chHHHHHHhhcCCC
Q psy12100 23 ETIPRNPAGKV---SPTELENIIMQIAG 47 (93)
Q Consensus 23 ~d~I~~~G~~v---~p~eiE~~l~~~~~ 47 (93)
|.++.++|..+ +..++.+.|++.++
T Consensus 48 D~I~~Ing~~v~~~~~~~~~~~l~~~~~ 75 (88)
T 1kwa_A 48 DEIREINGISVANQTVEQLQKMLREMRG 75 (88)
T ss_dssp CEEEEETTEEGGGSCHHHHHHHHHHCCE
T ss_pred CEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence 44555699999 57888888888766
No 89
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=27.12 E-value=98 Score=19.31 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.4
Q ss_pred echHHHHHHhhcCCCcceEEEEe
Q psy12100 33 VSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
-.|.+++..|.+.|+|-+.-.+.
T Consensus 183 ~dp~~l~~~l~~i~GVVe~GlF~ 205 (224)
T 3kwm_A 183 DNPLKLETELNQITGVVTNGIFA 205 (224)
T ss_dssp SCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCHHHHHHHHcCCCCEeeeCccc
Confidence 47999999999999998776663
No 90
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=27.10 E-value=30 Score=19.03 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=17.7
Q ss_pred cceeecCCeeechHHHHHHhhc
Q psy12100 23 ETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 23 ~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
.-+.+++|..+.|.+|.+.+.+
T Consensus 93 ~~i~~~~G~~~~~~ei~~~i~~ 114 (118)
T 3ju3_A 93 NKILKYNGRHMTEDEILKSAKE 114 (118)
T ss_dssp CCCCCBTTBCCCHHHHHHHHHH
T ss_pred eEEeeeCCeeCCHHHHHHHHHH
Confidence 3455679999999999988764
No 91
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=26.75 E-value=54 Score=14.89 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.3
Q ss_pred hHHHHHHhhcCCCcceEEE
Q psy12100 35 PTELENIIMQIAGVADVAV 53 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v 53 (93)
...||..|.+.|+|..+.+
T Consensus 15 ~~~i~~~l~~~~gv~~~~v 33 (66)
T 2roe_A 15 VMAVTKALKKVPGVEKVEV 33 (66)
T ss_dssp HHHHHHHHHTSTTCCCEEE
T ss_pred HHHHHHHHHcCCCeEEEEE
Confidence 3678999999999977554
No 92
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=26.02 E-value=1e+02 Score=19.77 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.9
Q ss_pred chHHHHHHhhcCCCcceEEEEe
Q psy12100 34 SPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
.|.+++..|...|+|-+.-.+.
T Consensus 217 dp~~l~~~l~~i~GVVe~GlF~ 238 (264)
T 1xtz_A 217 DPRKLHREIKLLVGVVETGLFI 238 (264)
T ss_dssp CHHHHHHHHHTSTTEEEESEEC
T ss_pred CHHHHHHHHhcCCCccccceEe
Confidence 6999999999999998776663
No 93
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=25.91 E-value=65 Score=16.93 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=17.7
Q ss_pred cceeecCCeeec---hHHHHHHhhcC
Q psy12100 23 ETIPRNPAGKVS---PTELENIIMQI 45 (93)
Q Consensus 23 ~d~I~~~G~~v~---p~eiE~~l~~~ 45 (93)
|-++.++|.++. ..++.+.|...
T Consensus 59 D~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 59 DEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 444556999998 79999988864
No 94
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=25.83 E-value=19 Score=19.85 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=11.5
Q ss_pred chHHHHHHhhc---CCCcceEEEE
Q psy12100 34 SPTELENIIMQ---IAGVADVAVV 54 (93)
Q Consensus 34 ~p~eiE~~l~~---~~~v~~~~v~ 54 (93)
++.+||+.|.. +|+|....++
T Consensus 10 ~~~evEe~l~RI~~~kgV~G~iIl 33 (106)
T 2hz5_A 10 SMAEVEETLKRLQSQKGVQGIIVV 33 (106)
T ss_dssp -----CHHHHHHHTSTTEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEE
Confidence 57788887654 6999766665
No 95
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=25.35 E-value=52 Score=14.94 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=26.0
Q ss_pred hHHHHHHhhcCCCcceEEEEeeeCCCCCceEEEEEEECCCCCcCHHHHHHHHcC
Q psy12100 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP 88 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 88 (93)
...||..|.+.|+|..+.+- . . . .. +.+...+. .+..++.+.+..
T Consensus 15 ~~~i~~~l~~~~gv~~~~v~-~--~-~-~~--~~v~~~~~--~~~~~i~~~i~~ 59 (69)
T 2kt2_A 15 AAHVKEALEKVPGVQSALVS-Y--P-K-GT--AQLAIVPG--TSPDALTAAVAG 59 (69)
T ss_dssp HHHHHHHHHHSTTEEEEEEE-T--T-T-TE--EEEEECTT--SCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeeEEEEE-c--c-C-CE--EEEEECCC--CCHHHHHHHHHH
Confidence 47789999999999765442 1 1 1 11 22333332 356667666643
No 96
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=25.18 E-value=92 Score=17.69 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=25.5
Q ss_pred eeccCCeEEEeee---eccccceeecCC-eeechHHHHHHhhc
Q psy12100 6 ALSVAPYKKLAGG---VKFLETIPRNPA-GKVSPTELENIIMQ 44 (93)
Q Consensus 6 ~~d~~g~~~~~GR---~gR~~d~I~~~G-~~v~p~eiE~~l~~ 44 (93)
.+|.+|-|.+..+ .|....+.+... .+.+..+|+..+..
T Consensus 88 ~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~ 130 (152)
T 2op6_A 88 EIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMIND 130 (152)
T ss_dssp EECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHH
T ss_pred EECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHH
Confidence 5788999998765 233333333332 46788999988765
No 97
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=25.11 E-value=53 Score=15.51 Aligned_cols=18 Identities=6% Similarity=0.427 Sum_probs=14.6
Q ss_pred HHHHHHhhcCC-CcceEEE
Q psy12100 36 TELENIIMQIA-GVADVAV 53 (93)
Q Consensus 36 ~eiE~~l~~~~-~v~~~~v 53 (93)
..||..|.+.+ +|..+.+
T Consensus 20 ~~ie~~l~~~~~GV~~~~v 38 (73)
T 1cc8_A 20 GAVNKVLTKLEPDVSKIDI 38 (73)
T ss_dssp HHHHHHHHTTTTSEEEEEE
T ss_pred HHHHHHHHhCCCCceEEEE
Confidence 67899999999 9976554
No 98
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=24.78 E-value=77 Score=16.01 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=18.0
Q ss_pred cceeecCCeee---chHHHHHHhhcCCC
Q psy12100 23 ETIPRNPAGKV---SPTELENIIMQIAG 47 (93)
Q Consensus 23 ~d~I~~~G~~v---~p~eiE~~l~~~~~ 47 (93)
|.++.++|..+ +..++-+.|++.++
T Consensus 51 D~I~~ing~~v~~~~~~~~~~~l~~~~~ 78 (93)
T 3o46_A 51 DELREVNGIPVEDKRPEEIIQILAQSQG 78 (93)
T ss_dssp CEEEEETTEESTTSCHHHHHHHHHHCCE
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 45556799998 66777778877654
No 99
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=24.39 E-value=60 Score=16.90 Aligned_cols=25 Identities=4% Similarity=0.088 Sum_probs=17.7
Q ss_pred cceeecCCeee---chHHHHHHhhcCCC
Q psy12100 23 ETIPRNPAGKV---SPTELENIIMQIAG 47 (93)
Q Consensus 23 ~d~I~~~G~~v---~p~eiE~~l~~~~~ 47 (93)
|-++.++|.++ ...++.+.|...++
T Consensus 70 D~I~~vng~~v~~~~~~~~~~~l~~~~~ 97 (104)
T 2z17_A 70 DVLANINGVSTEGFTYKQVVDLIRSSGN 97 (104)
T ss_dssp CBCCEETTEECTTCCHHHHHHHHHHTTT
T ss_pred CEEEEECCEEcCCCCHHHHHHHHHhCCC
Confidence 44455799999 56778888877654
No 100
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=24.05 E-value=1.2e+02 Score=19.18 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.0
Q ss_pred chHHHHHHhhcCCCcceEEEEe
Q psy12100 34 SPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
.|.+++..|.+.|+|-+.-.+.
T Consensus 200 dp~~l~~~l~~i~GVVe~GlF~ 221 (244)
T 2f8m_A 200 DLLETCTRIKMTTGVVDHGIFV 221 (244)
T ss_dssp SHHHHHHHHHTSTTEEEESEEC
T ss_pred CHHHHHHHHhcCCCcceeeeEe
Confidence 7999999999999998776663
No 101
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=23.67 E-value=1.1e+02 Score=18.97 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.5
Q ss_pred echHHHHHHhhcCCCcceEEEEe
Q psy12100 33 VSPTELENIIMQIAGVADVAVVG 55 (93)
Q Consensus 33 v~p~eiE~~l~~~~~v~~~~v~~ 55 (93)
-.|.+++..|.+.|+|-+.-.+.
T Consensus 186 ~~~~~l~~~l~~i~GVve~GlF~ 208 (227)
T 1uj6_A 186 GDPLGLHRALLEIPGVVETGLFV 208 (227)
T ss_dssp SCHHHHHHHHHTSTTEEEESEEC
T ss_pred CCHHHHHHHHhCCCCcceeccEe
Confidence 37999999999999998776663
No 102
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=23.50 E-value=62 Score=14.46 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.0
Q ss_pred hHHHHHHhhcCCCcceEEE
Q psy12100 35 PTELENIIMQIAGVADVAV 53 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v 53 (93)
...||..+.+.++|..+.+
T Consensus 15 ~~~i~~~l~~~~gv~~~~v 33 (68)
T 1cpz_A 15 VARIEEAVGRISGVKKVKV 33 (68)
T ss_dssp HHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEE
Confidence 3679999999999976544
No 103
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=23.49 E-value=56 Score=17.86 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=20.7
Q ss_pred eeecCCeeechHHHHHHhhcCCCc
Q psy12100 25 IPRNPAGKVSPTELENIIMQIAGV 48 (93)
Q Consensus 25 ~I~~~G~~v~p~eiE~~l~~~~~v 48 (93)
.|.+-|.++...+|+++|....++
T Consensus 52 kItIEG~dIdfd~I~~~IE~~Ggv 75 (100)
T 3bpd_A 52 KITILGNNLDYEQIKGVIEDMGGV 75 (100)
T ss_dssp EEEEEEEEECHHHHHHHHHTTTCE
T ss_pred EEEEEecCCCHHHHHHHHHHcCCe
Confidence 355689999999999999998775
No 104
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.32 E-value=86 Score=16.03 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=16.9
Q ss_pred cceeecCCeee---chHHHHHHhhcC
Q psy12100 23 ETIPRNPAGKV---SPTELENIIMQI 45 (93)
Q Consensus 23 ~d~I~~~G~~v---~p~eiE~~l~~~ 45 (93)
|-++.++|.++ +..++.+.+.+.
T Consensus 53 D~Il~Ing~~v~~~~~~~~~~~l~~~ 78 (90)
T 1y7n_A 53 HRIIEINGQSVVATPHEKIVHILSNA 78 (90)
T ss_dssp CEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44555699999 678888888753
No 105
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=23.15 E-value=62 Score=14.34 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=15.0
Q ss_pred hHHHHHHhhcCCCcceEEE
Q psy12100 35 PTELENIIMQIAGVADVAV 53 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v 53 (93)
...||..|...++|..+.+
T Consensus 16 ~~~i~~~l~~~~gv~~~~v 34 (66)
T 1yg0_A 16 VDKIEKFVGEIEGVSFIDV 34 (66)
T ss_dssp HHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHhcCCCceEEEE
Confidence 4779999999999976444
No 106
>1ugi_A UGI, uracil-DNA glycosylase inhibitor; protein mimicry of DNA, protein inhibitor, hydrolase inhibitor; 1.55A {Bacillus phage PBS2} SCOP: d.17.5.1 PDB: 1eui_C 1lqm_B 1lqg_C 1uug_B 2j8x_B 2ugi_A 2uug_C 2zhx_B 1udi_I 1ugh_I
Probab=23.09 E-value=83 Score=15.78 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=20.1
Q ss_pred cceeecCCeeechHHHHHHhhcCCC
Q psy12100 23 ETIPRNPAGKVSPTELENIIMQIAG 47 (93)
Q Consensus 23 ~d~I~~~G~~v~p~eiE~~l~~~~~ 47 (93)
+.+++.......|+++|.++..-|.
T Consensus 14 kqlviqesilmlpeeveevignkpe 38 (84)
T 1ugi_A 14 KQLVIQESILMLPEEVEEVIGNKPE 38 (84)
T ss_dssp CCCCCCCCEEECHHHHHHHHSSCCS
T ss_pred ceeeeehhhhhChHHHHHHhcCCCc
Confidence 4456667788899999999988776
No 107
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=22.68 E-value=64 Score=16.74 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=17.5
Q ss_pred cceeecCCeee---chHHHHHHhhcC
Q psy12100 23 ETIPRNPAGKV---SPTELENIIMQI 45 (93)
Q Consensus 23 ~d~I~~~G~~v---~p~eiE~~l~~~ 45 (93)
|.++.++|..+ ...++.+.|...
T Consensus 60 D~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 60 DRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp CEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhC
Confidence 44555799999 778888888775
No 108
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=22.63 E-value=66 Score=14.50 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.0
Q ss_pred hHHHHHHhhcCCCcceEEE
Q psy12100 35 PTELENIIMQIAGVADVAV 53 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v 53 (93)
...||..+...++|..+.+
T Consensus 18 ~~~i~~~l~~~~gv~~~~v 36 (71)
T 2xmw_A 18 ASSIERAIAKVPGVQSCQV 36 (71)
T ss_dssp HHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEE
Confidence 3679999999999976544
No 109
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=22.11 E-value=69 Score=14.52 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCCcceEEE
Q psy12100 36 TELENIIMQIAGVADVAV 53 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v 53 (93)
..||..|...++|..+.+
T Consensus 21 ~~i~~~l~~~~gv~~~~v 38 (71)
T 2l3m_A 21 NAIESSVKELNGVEQVKV 38 (71)
T ss_dssp HHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEE
Confidence 669999999999976544
No 110
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=21.94 E-value=73 Score=14.71 Aligned_cols=19 Identities=42% Similarity=0.636 Sum_probs=15.1
Q ss_pred hHHHHHHhhcCCCcceEEE
Q psy12100 35 PTELENIIMQIAGVADVAV 53 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v 53 (93)
...||..|...++|..+.+
T Consensus 18 ~~~ie~~l~~~~gV~~~~v 36 (73)
T 1mwy_A 18 ARKVENAVRQLAGVNQVQV 36 (73)
T ss_dssp HHHHHHHHHTSSSEEEEEE
T ss_pred HHHHHHHHhcCCCeeEEEE
Confidence 3679999999999976544
No 111
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=21.72 E-value=87 Score=15.93 Aligned_cols=25 Identities=4% Similarity=-0.141 Sum_probs=17.7
Q ss_pred cce-eecCCeeech---HHHHHHhhcCCC
Q psy12100 23 ETI-PRNPAGKVSP---TELENIIMQIAG 47 (93)
Q Consensus 23 ~d~-I~~~G~~v~p---~eiE~~l~~~~~ 47 (93)
.|. +.++|..+.. .++.+.+...++
T Consensus 54 GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 82 (98)
T 2jxo_A 54 QDRIVEVNGVCMEGKQHGDVVSAIRAGGD 82 (98)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 444 4569999974 788888877643
No 112
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=21.22 E-value=73 Score=14.44 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCCcceEEE
Q psy12100 36 TELENIIMQIAGVADVAV 53 (93)
Q Consensus 36 ~eiE~~l~~~~~v~~~~v 53 (93)
..||..+.+.++|..+.+
T Consensus 19 ~~i~~~l~~~~gv~~~~v 36 (72)
T 1aw0_A 19 QSIEGVISKKPGVKSIRV 36 (72)
T ss_dssp HHHHHHHHTSTTCCCEEE
T ss_pred HHHHHHHhcCCCeEEEEE
Confidence 678999999999976554
No 113
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=21.10 E-value=47 Score=14.69 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=14.9
Q ss_pred hHHHHHHhhcCCCcceEEE
Q psy12100 35 PTELENIIMQIAGVADVAV 53 (93)
Q Consensus 35 p~eiE~~l~~~~~v~~~~v 53 (93)
...||..|.+.++|..+.+
T Consensus 16 ~~~i~~~l~~~~gv~~~~v 34 (64)
T 2xmm_A 16 AEAVTKAVQNEDAQATVQV 34 (64)
T ss_dssp HHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 3678999999999976443
No 114
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=21.09 E-value=93 Score=15.64 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=18.0
Q ss_pred cceeecCCeee---chHHHHHHhhcCCC
Q psy12100 23 ETIPRNPAGKV---SPTELENIIMQIAG 47 (93)
Q Consensus 23 ~d~I~~~G~~v---~p~eiE~~l~~~~~ 47 (93)
|.++.++|..+ ...++.+.|++.++
T Consensus 44 D~Il~ing~~v~~~~~~~~~~~i~~~~~ 71 (88)
T 3e17_A 44 DIILKINGTVTENMSLTDARKLIEKSRG 71 (88)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHTTT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 44556799998 67777778877654
No 115
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=20.90 E-value=1.1e+02 Score=18.47 Aligned_cols=37 Identities=8% Similarity=-0.066 Sum_probs=26.3
Q ss_pred cceeccCCeEEEeeeeccccceeecCCeeechHHHHHHhhc
Q psy12100 4 EKALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 4 ~~~~d~~g~~~~~GR~gR~~d~I~~~G~~v~p~eiE~~l~~ 44 (93)
..|.|..|++.+ |. |...+ ...|..+..++.+..|..
T Consensus 47 ~aY~D~~Gv~TI-Gy-Ght~~--V~~g~~iT~~ea~~lL~~ 83 (191)
T 1xjt_A 47 DPYMCPAGVWTD-GI-GNTHG--VTPGVRKTDQQIAADWEK 83 (191)
T ss_dssp EEEECSSCCEEE-ET-TBCSS--CCTTCCCCHHHHHHHHHH
T ss_pred eeeeCCCCCceE-Ee-ccccC--cCCCCccCHHHHHHHHHH
Confidence 567888998887 33 33333 235889999999988775
No 116
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=20.83 E-value=74 Score=14.40 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=18.6
Q ss_pred eecCCeee--chHHHHHHhhcCCCcceEEE
Q psy12100 26 PRNPAGKV--SPTELENIIMQIAGVADVAV 53 (93)
Q Consensus 26 I~~~G~~v--~p~eiE~~l~~~~~v~~~~v 53 (93)
+.+.|..- -...||..|...++|..+.+
T Consensus 7 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v 36 (72)
T 1osd_A 7 LSVPGMTCSACPITVKKAISKVEGVSKVDV 36 (72)
T ss_dssp EECTTCCSTTHHHHHHHHHHTSTTEEEEEE
T ss_pred EEECCeEcHHHHHHHHHHHhcCCCeEEEEE
Confidence 34444433 23679999999999976544
No 117
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=20.66 E-value=1.6e+02 Score=18.09 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=29.1
Q ss_pred ceeccCCeEEEeeeecccccee-----------ecCCeeechHHHHHHhhc
Q psy12100 5 KALSVAPYKKLAGGVKFLETIP-----------RNPAGKVSPTELENIIMQ 44 (93)
Q Consensus 5 ~~~d~~g~~~~~GR~gR~~d~I-----------~~~G~~v~p~eiE~~l~~ 44 (93)
+..|.+|++.-.|.+ ++.| +..|.+.+|..+.+.+--
T Consensus 57 C~VD~~g~V~~~~~~---~~~i~~~~~l~~~~~~~~~~~FsP~wlk~~~Yp 104 (196)
T 3fze_A 57 CFVDRNNYVLDYGSV---LHKIDSLDSISNLKSKSSSTQFSPIWLKNTLYP 104 (196)
T ss_dssp EEEETTSBEEEEEEH---HHHCCSHHHHHGGGGCCCCCBCCHHHHHHHHCT
T ss_pred EEEeCCCCEEEeehH---HhhhhhhhhhhhhhcccCCcccCHHHHHhhhcc
Confidence 457889999888887 6666 235699999999998864
No 118
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=20.58 E-value=73 Score=14.65 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=15.4
Q ss_pred chHHHHHHhhcCCCcceEEE
Q psy12100 34 SPTELENIIMQIAGVADVAV 53 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v 53 (93)
-...||..|...++|..+.+
T Consensus 17 C~~~ie~~l~~~~gv~~~~v 36 (71)
T 2aj0_A 17 CAAKFERNVKEIEGVTEAIV 36 (71)
T ss_dssp HHHHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEE
Confidence 34679999999999976444
No 119
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.58 E-value=59 Score=15.43 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.1
Q ss_pred chHHHHHHhhcCCCcceEEE
Q psy12100 34 SPTELENIIMQIAGVADVAV 53 (93)
Q Consensus 34 ~p~eiE~~l~~~~~v~~~~v 53 (93)
-...||+.|.+ |+|..+.+
T Consensus 19 C~~~ie~~l~~-~gv~~~~v 37 (73)
T 3fry_A 19 CVARVKKALEE-AGAKVEKV 37 (73)
T ss_dssp GHHHHHHHHHH-TTCEEEEE
T ss_pred HHHHHHHHhcc-CCcEEEEE
Confidence 35789999999 99976554
No 120
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=20.03 E-value=26 Score=19.83 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=23.1
Q ss_pred eccCCeEEEeeeeccccceeec--CCeeechHHHHHHhhcCC
Q psy12100 7 LSVAPYKKLAGGVKFLETIPRN--PAGKVSPTELENIIMQIA 46 (93)
Q Consensus 7 ~d~~g~~~~~GR~gR~~d~I~~--~G~~v~p~eiE~~l~~~~ 46 (93)
.|.||++.-.=.. .|+|++ +|..|-..+||.+=+..|
T Consensus 74 ~dsdGeieTkL~K---GdV~~T~gGG~~V~FtDiE~Lkq~sP 112 (120)
T 3vhx_B 74 LASDGEIETKLIK---GDIYKTRGGGQSVQFTDIETLKQESP 112 (120)
T ss_dssp ECTTSCEEEEEEE---EEEEECTTSCEEEEEEEEEEEEEECC
T ss_pred ecCCCcEEEEEEE---eeEEeecCCceEEEecchheeeccCC
Confidence 4667777643223 567877 677888888776433344
Done!