RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12100
(93 letters)
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 83.8 bits (208), Expect = 1e-20
Identities = 30/57 (52%), Positives = 43/57 (75%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
V P ELE ++++ VAD AV+G+PD ++GE+P+A+VV KPG +LTEQE+ YV K
Sbjct: 405 VPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKK 461
Score = 40.7 bits (96), Expect = 2e-05
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
VA YK+L GGV F++ IP++P+GK+
Sbjct: 462 VAKYKQLRGGVVFVDEIPKSPSGKI 486
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 77.9 bits (193), Expect = 2e-18
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+ P ELE+ + VA+VAV+GVPD GE P A VV KPG L +E+ +++ +
Sbjct: 428 IYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGR 484
Score = 25.5 bits (57), Expect = 5.0
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
+A +K L + F++ +PR GK+
Sbjct: 485 LAKFK-LPKRIAFVDELPRTSVGKI 508
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 73.7 bits (182), Expect = 5e-17
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
V P E+E ++ V + AVVGVPD GE KAFVV K G LTE+E+ ++ +
Sbjct: 382 VYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRER 438
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 71.3 bits (176), Expect = 3e-16
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+ P E+EN+++ VADVAV+GVPD GE A VV +PG L +E+ ++ +
Sbjct: 256 IYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRER 312
Score = 28.6 bits (65), Expect = 0.32
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 10 APYKKLAGGVKFLETIPRNPAGKVSPTEL 38
A YK V+F++ +PRN +GK+ EL
Sbjct: 314 AGYKVPKS-VEFVDELPRNASGKILKREL 341
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 68.3 bits (167), Expect = 4e-15
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG--VELTEQEISSYVE 87
+ P E+E ++ + VA+ AVVGVPD GE A VV KPG ELT +E+ +++
Sbjct: 433 NIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLR 490
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 66.5 bits (163), Expect = 2e-14
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V+P ELE +++ +AD AV+ PD +GE+P AFVV++PG EL+E E+ +V
Sbjct: 419 VAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVMQFV 472
Score = 34.9 bits (81), Expect = 0.003
Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
VAPYKK+ V F++ IP++P+GK+
Sbjct: 476 VAPYKKVRK-VVFVDAIPKSPSGKI 499
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 65.9 bits (161), Expect = 4e-14
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
VS ELENII + D+ VVG+ D++ E KAFVV G L+E+E ++ E
Sbjct: 431 VSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCE 485
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 65.7 bits (161), Expect = 4e-14
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
+S E+E ++ + V + AVV PD GE P AFVV KPG +TE+E+ Y
Sbjct: 434 ISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEELIEY 486
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 64.9 bits (159), Expect = 7e-14
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+S ELEN +M VA+ AVVGVP GE P A VV KPG ++TE+E+ ++ K
Sbjct: 430 ISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKK 486
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 63.8 bits (156), Expect = 1e-13
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V P E+E++++Q VA+ AVVGVPD GE AFVV +PG + +E+ +++
Sbjct: 256 NVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHL 310
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 63.3 bits (155), Expect = 2e-13
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
+ P E+E ++ VA+ AVVGVPD GEV AFVV KPG LTE+E+ ++
Sbjct: 260 NIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFC 314
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 63.4 bits (155), Expect = 2e-13
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
+VSPTE+E +I VA+ AV+GVPD L G+ A VV G L E+E+ +
Sbjct: 263 RVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKH 316
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 62.6 bits (153), Expect = 4e-13
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
V P E+E ++ + VA+ AV+GVPD GEV KA+VV KPG ELTE+E+ +Y
Sbjct: 425 VYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAY 477
Score = 29.1 bits (66), Expect = 0.27
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 19 VKFLETIPRNPAGKVSPTEL 38
++FL+ +P+N GKV L
Sbjct: 491 IEFLDELPKNATGKVLKRAL 510
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 61.9 bits (151), Expect = 8e-13
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 28 NPAGK-VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE--QEISS 84
+GK + P E+E++++ VA+ AVVGVPD G++ AFVV GVE E +EI
Sbjct: 423 KVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRR 482
Query: 85 YVE 87
+V
Sbjct: 483 HVA 485
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 59.2 bits (144), Expect = 6e-12
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V+P ELE +++ +AD AVV + D ++GEVP AFVV+ G E+TE EI +V
Sbjct: 445 VAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFV 498
Score = 26.9 bits (60), Expect = 1.6
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
V YK++ V F+++IP+ P+GK+
Sbjct: 502 VVFYKRI-HKVFFVDSIPKAPSGKI 525
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 58.4 bits (142), Expect = 1e-11
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
+S E+E I+ VA+ AVV VP L + KA VV +PG L + + + + P
Sbjct: 335 ISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDRLP 393
Score = 26.4 bits (59), Expect = 2.2
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 11 PYKKLAGGVKFLETIPRNPAGKVSPTELE 39
PY + ++F++ +P+ P K+ EL
Sbjct: 393 PYFMVPRYIEFVDELPKTPTEKIQKAELR 421
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 58.4 bits (142), Expect = 1e-11
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 28 NPAGK-VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT---EQEIS 83
AGK V P E+E+++ VA+ A +GVPD + GE FVV KPGV + E E++
Sbjct: 362 KVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELA 421
Query: 84 SYVE 87
+V
Sbjct: 422 DHVG 425
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 58.0 bits (141), Expect = 2e-11
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
K+SP E+E ++++ VA+ V GVPD L GE A VV + ++T +E+ +
Sbjct: 257 KISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFA 311
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 57.9 bits (140), Expect = 2e-11
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
+ P E+E +I +++ V +VAVVG GE+P AF+VKK L E+++ +
Sbjct: 404 IYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCR 458
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 57.3 bits (139), Expect = 3e-11
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK-PGVELTEQEISSY 85
V P E+E ++ GV +VA VGVPD SGE K FVVKK P LTE+++ ++
Sbjct: 468 VYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDP--ALTEEDVKAF 519
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 57.2 bits (138), Expect = 4e-11
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
+++P +LE +++ + D AV VPD GE+P AFVV++ G L+++ + +YV
Sbjct: 462 QIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVA 517
Score = 34.4 bits (79), Expect = 0.004
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIM 43
A VAPYKK+ V F+++IP++PAGK+ EL+ +
Sbjct: 517 AKQVAPYKKVRK-VVFVQSIPKSPAGKILRRELKRSLT 553
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 56.8 bits (138), Expect = 4e-11
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
K+SP E+EN+++ VAD AVVG+PD + GE AFVV + G T E+ ++
Sbjct: 396 KISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAF 449
Score = 26.4 bits (59), Expect = 2.6
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 KALSVAPYKKLAGGVKFLETIPRNPAGKVSPTEL 38
+ +A +K L ++ ++++P P GKV L
Sbjct: 451 REQGLAKFK-LPDRLEVVDSLPLTPVGKVDKKAL 483
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 56.5 bits (137), Expect = 6e-11
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
P E+E +++ GVA+ VVGVPD G+VP AFVVK E+TE+E+ + E K
Sbjct: 395 PAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK--SGEVTEEELRHFCEEK 447
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 56.4 bits (137), Expect = 7e-11
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
+ P E+E + + DV VVGVPD GE A+++ +PG LTE+++ +
Sbjct: 460 IYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDF 512
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 56.1 bits (136), Expect = 7e-11
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
V P E+E+++ + VA VAV+GVPD GE A VV +PG + E+ ++V+ +K
Sbjct: 426 VFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERK 483
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 56.0 bits (136), Expect = 7e-11
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+ P E+E +++Q V + AVVGVPD G+ P AFVV ++ +E+ +++ K
Sbjct: 320 NIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDD-PVSVEELQAFLADK 376
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 55.8 bits (135), Expect = 1e-10
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE--LTEQEISSYV 86
KV P E+E ++ Q V +V V+G PD GEV KAFVV KP +TE++I +
Sbjct: 342 KVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 55.3 bits (134), Expect = 2e-10
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
KVS E+E +++ GVA+VAV+GVPD GE A VV + G LT E+
Sbjct: 347 KVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAEL 397
Score = 28.7 bits (65), Expect = 0.29
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 10 APYKKLAGGVKFLETIPRNPAGKV 33
APYK V ++ +PRN GKV
Sbjct: 406 APYKIPKR-VIVVDELPRNAMGKV 428
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 55.1 bits (133), Expect = 2e-10
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ---EISSYVEP 88
++ P ++E+ +++ VA+ AVVGVPD L GE+ KAFVV K G +++ E+ +V+
Sbjct: 349 RIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKK 408
Query: 89 K 89
+
Sbjct: 409 R 409
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 54.9 bits (133), Expect = 2e-10
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V P E+E+++ V + AV+GV D G+ +AFVVK PG L E I YV
Sbjct: 460 VFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYV 513
Score = 31.8 bits (73), Expect = 0.026
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 VKFLETIPRNPAGKVSPTELENI 41
V FL+ +PRNP GKV EL +
Sbjct: 526 VVFLDELPRNPTGKVLKRELREM 548
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 55.0 bits (133), Expect = 2e-10
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEIS 83
N AG ++S E+E +++ VA+ AVVGV D L G+VP VV K ++ ++
Sbjct: 488 NVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLE 544
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 54.7 bits (132), Expect = 2e-10
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
++ P E+E+ +++ VA+ AVVG PD + GEV KAFVV PG + +E+
Sbjct: 339 RIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEE 387
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 54.4 bits (131), Expect = 3e-10
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
V P ELE+++ + GV A +GVPD SGE K FVV KPG LT++++
Sbjct: 466 VYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQV 515
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 54.3 bits (131), Expect = 3e-10
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYV 86
++ P E+E +++ V + AVVGVPD GE+ KAFVV GVE ++ E+ V
Sbjct: 348 RIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSDELATELQELV 405
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 54.3 bits (131), Expect = 3e-10
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
V P E+E+ +M+ VA+ V+G PD ++GE+ KAFV +PG E +E+
Sbjct: 353 VGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEE 400
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 54.2 bits (131), Expect = 4e-10
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYVEPK 89
VSP E+E+ ++Q V + AVVG D PKAFVV K G E E+ +V+ K
Sbjct: 417 VSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDK 476
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 53.9 bits (130), Expect = 4e-10
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
V P E+E ++ V++VAV+GVPD + GEV A V + G + E E+ ++++ K
Sbjct: 427 VYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGK 483
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 53.5 bits (129), Expect = 7e-10
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE 76
++SP E+E+ +++ VA+ AVV PD + VPKA++V KPG E
Sbjct: 340 RISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYE 384
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 53.0 bits (128), Expect = 9e-10
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELT 78
+S E+E+++++ VA+VAVV +PD GE A VV PG LT
Sbjct: 348 NISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLT 394
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 51.8 bits (125), Expect = 3e-09
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ---EISSYV 86
V P E+E+ +M+ VA+ V+G PD + GE+ KAFV +PG E +E+ EI +V
Sbjct: 465 VGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFV 521
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 51.2 bits (123), Expect = 4e-09
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
V P E+E+++M V +VA VGVP +SGE K FVVKK LTE+E+
Sbjct: 465 VYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDP-SLTEEEL 513
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 50.8 bits (122), Expect = 5e-09
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYV 86
VSP E+E + + VA+ AVV VPD KAFVV +PG +L E+++ ++
Sbjct: 347 VSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFL 403
Score = 26.5 bits (59), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 10 APYKKLAGGVKFLETIPRNPAGKV 33
APYK ++FL+T+PR GK+
Sbjct: 408 APYK-CPRQIEFLDTLPRTATGKL 430
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 50.6 bits (122), Expect = 6e-09
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
V P E+E I ++ GV + AV+GVP GE A VV KPG L E I
Sbjct: 410 VYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAI 459
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 50.4 bits (121), Expect = 9e-09
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
V P+E+E ++ Q V AVVG PD G+VP AFV KPG +LT + ++
Sbjct: 475 VFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAW 527
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 49.6 bits (119), Expect = 2e-08
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
P +E +++ VA A VG PD +GE+P A+V KPG +TE E+ ++V
Sbjct: 269 PQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFV 320
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 48.7 bits (116), Expect = 3e-08
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKK 72
V P E+E++I + GV +VA VGVPD SGE+ K +VKK
Sbjct: 470 VYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK 509
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 48.7 bits (117), Expect = 3e-08
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYVE 87
E+E+ ++ VA+ AVVG PD + GE AFV K GVE ++ +E+ +V
Sbjct: 500 EVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTLKDGVEPSDELRKELKKHVR 553
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 48.2 bits (115), Expect = 5e-08
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
P E+E + VADV V GVPD GE A+V PG +E+E+ +
Sbjct: 463 PREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREF 513
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 47.9 bits (114), Expect = 6e-08
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV-KKPGVELTE------QEISSY 85
V P E+E+++M VA+ A +GVPD SGE K FVV + PG+ + E + + Y
Sbjct: 474 VYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAYCKENFTGY 533
Query: 86 VEPKKPVL 93
PK VL
Sbjct: 534 KVPKHIVL 541
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 47.8 bits (114), Expect = 6e-08
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V P E+E + VA+ AV+GV D G+ AFVV KPG T + + +V
Sbjct: 449 VYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHV 502
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 48.0 bits (115), Expect = 7e-08
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
P +E +++ VA A VG PD +GE+P A+V KPG TE E+ ++
Sbjct: 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFA 531
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 47.6 bits (114), Expect = 9e-08
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
V+ E+E + VA+VAV+G+PD E A VV K G +TE E+
Sbjct: 428 VASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDEL 477
Score = 26.0 bits (58), Expect = 2.9
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 10 APYKKLAGGVKFLETIPRNPAGKVSPTEL 38
A +K + V F++ +PRNP+GK+ EL
Sbjct: 486 AGFK-VPKRVIFVDELPRNPSGKILKREL 513
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 47.3 bits (113), Expect = 1e-07
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQE 81
E+E I VA+VAVVGV D L G+V AFVV K L ++E
Sbjct: 510 EIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADRE 554
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 46.6 bits (111), Expect = 2e-07
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
P E+E ++ + GV D AV G+PD GE A V +PG L E +I + ++
Sbjct: 414 PAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLK 466
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 46.4 bits (110), Expect = 2e-07
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
++ +E+E +I ++ VA+ AV+GV D GE A VV PG LT + + +
Sbjct: 406 IASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCR 460
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 45.7 bits (108), Expect = 4e-07
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
+V+P ELE I++ V D AVV +PD +GE+P A VV P + +E++I ++V
Sbjct: 449 QVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFV 503
Score = 26.9 bits (59), Expect = 1.6
Identities = 12/28 (42%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKV 33
A +VA YKK+ V+F+++IP++ +GK+
Sbjct: 504 AANVAHYKKVRV-VQFVDSIPKSLSGKI 530
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 45.3 bits (108), Expect = 5e-07
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE--LTEQEI 82
N +G KV P E+EN++ + + + V+ PD GE KA VV +P TE+EI
Sbjct: 443 NASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEI 500
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 45.4 bits (108), Expect = 5e-07
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE-------QEISS 84
V P E+E I+ V DV V+G+PD GEV A V K E ++S
Sbjct: 356 NVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLSP 415
Query: 85 YVEPKK 90
+ +PK
Sbjct: 416 FKQPKH 421
Score = 28.4 bits (64), Expect = 0.39
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 22 LETIPRNPAGKVSPTELENIIMQ 44
+ +PRNP GK++ +L+ I +Q
Sbjct: 425 VPQLPRNPQGKINRQQLQQIAVQ 447
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 45.3 bits (108), Expect = 5e-07
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ------ 80
N +G ++ E+E+ ++ VA+ AVVG+PD + G+ AFV K G E ++
Sbjct: 502 NVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELR 561
Query: 81 -----EISSYVEPKK 90
EI +P K
Sbjct: 562 KHVRKEIGPIAKPDK 576
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 45.5 bits (108), Expect = 5e-07
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+S ++EN+ + VA+ A + E P VVK+PG E+T +E+ ++ E K
Sbjct: 442 ISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGK 498
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 44.9 bits (107), Expect = 6e-07
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEI 82
+S E+E+++ + V AVV PD GEVP AFV K G TE+EI
Sbjct: 449 ISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEI 498
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 45.1 bits (107), Expect = 6e-07
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV----KKPGVELTEQEISSYV 86
++ P E+E+ ++Q V + AV GVPD + G+V KA +V +P EL ++E+ +V
Sbjct: 444 RIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEEL-KKELQDHV 501
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 44.5 bits (106), Expect = 1e-06
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYVEPK 89
P E+EN+++ VADVAV GVPD GE KA V G + + E+ +++ +
Sbjct: 404 PQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGR 461
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 44.0 bits (104), Expect = 2e-06
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73
++ P E+E+ +++ V + AVV PD + GEV KAFVV P
Sbjct: 434 RIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAP 475
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 43.6 bits (103), Expect = 2e-06
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV-KKPGVELTEQEISSYVEPKK 90
+S E+E+I++Q + D VV +PD GE A+VV K P LT +E+ ++ K+
Sbjct: 443 ISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKR 501
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 43.5 bits (103), Expect = 2e-06
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
E+E ++ + +A VA+V PD GE AFVV +PG L +E+ +++ +K
Sbjct: 456 EIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQK 509
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 43.1 bits (102), Expect = 3e-06
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE 79
P E EN+++ VAD AV GVP+ GE KA V GV+
Sbjct: 417 PQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGP 461
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 42.8 bits (102), Expect = 4e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 48 VADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
VA+ AVVG PD + G+ AFV K G E +++
Sbjct: 531 VAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDE 563
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 42.9 bits (101), Expect = 4e-06
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG---VELTEQEISSYVEPK 89
VSP E+E+ ++Q V + AVVGV D PKAF+V +PG E E+ +V+ +
Sbjct: 417 VSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDR 476
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 42.5 bits (100), Expect = 5e-06
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
V P E+E ++ G+ + AVVG+ D GEV +V G L + I S++
Sbjct: 394 VYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLS 448
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 42.4 bits (100), Expect = 5e-06
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+S +LEN+ + VA+ AV+GV E P V KPG T +EI Y++ K
Sbjct: 443 ISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGK 499
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 42.3 bits (99), Expect = 7e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
V P E+E ++ + V +V +GVPD GE KAFVV K G E +E+E++ +
Sbjct: 464 VYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQF 516
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 42.1 bits (99), Expect = 8e-06
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 36 TELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
+LEN IM V + AV+G PD GE P A V PG+E T +
Sbjct: 466 AQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRE 510
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 41.8 bits (98), Expect = 9e-06
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
+ P+E+E ++ + GV +V V+G+PD G+ A VV + G L+ + ++
Sbjct: 409 IHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSADALDTF 461
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 41.7 bits (98), Expect = 1e-05
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFV 69
V P E+E ++ Q GVA V VVGVPD+ E+ A V
Sbjct: 447 VYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACV 483
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 41.5 bits (98), Expect = 1e-05
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
V P E+E ++ + GV D AVVG+P E A VV +PG L + + +Y
Sbjct: 478 VYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAY 530
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 41.3 bits (97), Expect = 1e-05
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV 70
+ P E+E ++ Q G+ + VV PD G+VP A++V
Sbjct: 353 IYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 41.4 bits (97), Expect = 1e-05
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
N AG ++ E+E + VA+VAVVGV D L G+V F + K + V
Sbjct: 499 NVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAV 558
Query: 87 E 87
E
Sbjct: 559 E 559
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 41.3 bits (97), Expect = 1e-05
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL 77
+VSPTE+E + VA+ GVPD G+ V G EL
Sbjct: 428 RVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL 473
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 40.7 bits (95), Expect = 2e-05
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
E+EN++ Q VA VA+V PD GE A VV KPG L + ++++ +K
Sbjct: 454 EIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQK 507
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 40.5 bits (95), Expect = 2e-05
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYV 86
++ E+E+ ++ VA+ AV+GVPD G++ A +V + G EL + + +V
Sbjct: 398 IAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFV 454
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 40.3 bits (95), Expect = 3e-05
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
N G KV P E+E + VAD VVGVPD G+ A V + G E+ ++
Sbjct: 435 NTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHC 494
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 40.1 bits (94), Expect = 3e-05
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
+S E+E +++ VA AV VP L + A VV + G L + + EP+
Sbjct: 433 ISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLA 491
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 40.0 bits (93), Expect = 5e-05
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
V P +EN + VAD AV+GVPD G AFVV PG + ++ Y++
Sbjct: 429 VYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLK 483
Score = 25.3 bits (55), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 19 VKFLETIPRNPAGKVSPTEL 38
+ + +IPRNP GKV EL
Sbjct: 495 INIVSSIPRNPTGKVLRKEL 514
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 39.3 bits (92), Expect = 7e-05
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73
N G K++ E+EN++++ V D A+V +PD L GE AF+V K
Sbjct: 441 NRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE 487
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 39.1 bits (91), Expect = 9e-05
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 6 ALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVP 65
+LS A + G +K E I R K+SP +E ++ V + AV GVPD L GE
Sbjct: 417 SLSAAGDLSIRGRIK--ELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAV 473
Query: 66 KAFVVKKPGVELTEQEISSY 85
A +V + T +E+ +
Sbjct: 474 AAVIVPRESAPPTAEELVQF 493
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 38.4 bits (89), Expect = 1e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74
V P +E I + GV +V V+G+PD GE KAFV +PG
Sbjct: 454 VYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPG 495
Score = 24.5 bits (53), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 14 KLAGGVKFLETIPRNPAGKVSPTEL 38
+L V+F++ +PR P GK+S EL
Sbjct: 516 ELPVAVEFVDELPRTPVGKLSRHEL 540
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 38.5 bits (89), Expect = 1e-04
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
+S E+EN++ + V + AVV +P GE P AFVV + G E + V
Sbjct: 453 ISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLV 506
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
++ E+E ++ GV + AVVGVPD G+ A+VV ++ E+ +V
Sbjct: 383 RIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVV--GADDVAADELIDFV 435
Score = 26.9 bits (60), Expect = 1.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 19 VKFLETIPRNPAGKVSPTEL 38
V+F++ +PRN GKV +L
Sbjct: 448 VRFVDALPRNAMGKVLKKQL 467
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 37.5 bits (87), Expect = 3e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
+S E+EN++ V + +VV PD GE P AFV KPGV+ +++
Sbjct: 463 ISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDE 510
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 37.3 bits (87), Expect = 3e-04
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
N G KV P E+E + VAD VVGVPD G+ A V + G L E+ +
Sbjct: 273 NTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHC 332
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 37.4 bits (87), Expect = 3e-04
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGE-VPKAFVVKKPGVELTEQEI 82
V+P E+E+ + + GVA VVG T G+ VP AFV+ G E +
Sbjct: 439 VNPAEIEHALEALPGVAAAQVVGA--TRDGKTVPVAFVIPTDGASPDEAGL 487
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 36.0 bits (84), Expect = 0.001
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPK--AFVVKKPGVELTE-------QEISSYVE 87
E+E + + GV + V+ VP +V + AFVV K G T+ + + Y+
Sbjct: 367 EIEAALRALPGVEEAVVLPVPK--GEKVVRLVAFVVGKEGALDTKALKKELKKRLPPYMI 424
Query: 88 PKK 90
P++
Sbjct: 425 PRR 427
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 35.8 bits (82), Expect = 0.001
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
+ P E EN + V DVAV+GVPD GE KA + G+ +++
Sbjct: 412 IYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDE 459
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 38 LENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVEL 77
+E I+++ +VAV VPD + G+ A +V PG +
Sbjct: 419 IERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKF 458
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 35.5 bits (82), Expect = 0.001
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFV----VKKPGVELTEQEISSYVEP 88
+ P E+E+++ + V ++ V+GVPD+ GE P A + K+ Q +SS+ P
Sbjct: 394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIP 453
Query: 89 KK 90
K+
Sbjct: 454 KE 455
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 35.3 bits (82), Expect = 0.001
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPD-TLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
VS TE+E ++ + GV + V GV G A + PG Q +++++ + P
Sbjct: 351 VSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLP 410
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 35.4 bits (82), Expect = 0.002
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 12 YKKLAGGVKFLE----TIPRNPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPK 66
YK G + F+ I N +G V P E+E++++++ GV + V D ++GE K
Sbjct: 300 YKSERGTLHFMGRMDDVI--NVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVK 357
Query: 67 AFVVKKPGVELTE 79
A V+ ++ +
Sbjct: 358 AKVISHEEIDPVQ 370
Score = 24.6 bits (54), Expect = 8.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 21 FLETIPRNPAGKVSPTELE 39
+ IP+N GKVS LE
Sbjct: 390 SVTEIPKNANGKVSRKLLE 408
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 34.6 bits (80), Expect = 0.003
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE-------LTEQEISS 84
K++ E+EN++++ V A+V + D L GE AF+V K ++ L EQ I+
Sbjct: 441 KIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIAE 500
Query: 85 YVEP 88
+ P
Sbjct: 501 FKLP 504
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 34.4 bits (79), Expect = 0.003
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73
K++ E+EN+++ V D A+V +PD L GE AF+V +
Sbjct: 439 KIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRD 480
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 34.0 bits (79), Expect = 0.005
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
E+E ++ GV + VV D + A+VV G EL E+ ++
Sbjct: 362 LGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAF 412
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 33.6 bits (77), Expect = 0.007
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFV-VKKPGVELTEQEISSYV 86
E+EN++ + +VAV+G D GEVP A V+ LT ++++ ++
Sbjct: 436 EVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFL 486
Score = 28.6 bits (64), Expect = 0.43
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVG 55
+A YK ++ ++ +PRNPAGKV TEL + G
Sbjct: 490 LARYKH-PKALEIVDALPRNPAGKVLKTELR----ERYGACVNVERR 531
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 33.5 bits (77), Expect = 0.008
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
V P +E + VAD AV G+PD G+ A VV G T + + ++V
Sbjct: 265 TVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVA 320
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 32.8 bits (75), Expect = 0.014
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKA 67
VS TE+E I+ + G+ DV V GV EVP
Sbjct: 382 VSTTEVEGILSNVLGLEDVVVYGV------EVPGV 410
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 31.9 bits (73), Expect = 0.024
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 38 LENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
+E I+++ + VAV VPD G+ A +V + G +++
Sbjct: 418 IERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAF 465
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 31.9 bits (72), Expect = 0.032
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74
V P E+E +I++ VA+ AVV V ++ +AF+V G
Sbjct: 398 VDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSG 439
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 31.5 bits (72), Expect = 0.032
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 33 VSPTELENIIMQIAGVADVAV 53
+ P E+E ++++ GVA+ AV
Sbjct: 392 IEPGEIEAVLLEHPGVAEAAV 412
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 30.6 bits (70), Expect = 0.087
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFV 69
P E+E +I Q V V VV V D G+ P A V
Sbjct: 366 PEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVV 400
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 30.2 bits (69), Expect = 0.099
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 28 NPAGK-VSPTELENIIMQIAGVADVAVVG 55
GK ++P +EN + ++ VVG
Sbjct: 339 TAGGKNIAPQPIENALKASPYISQAVVVG 367
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 29.9 bits (68), Expect = 0.13
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPK---AFVVKKPGVELTEQEISSYVEPK 89
V E+E + + GV VV V D K AFVV + G + + + +
Sbjct: 392 VELGEIEAALARHPGVQRAVVVVVGD----GGAKALAAFVVAEDGAAVDAAVLRAALAEL 447
Query: 90 KP 91
P
Sbjct: 448 LP 449
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 29.8 bits (68), Expect = 0.13
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKA 67
V+ TE+EN + GV + V GV EVP
Sbjct: 472 VATTEVENALSGFPGVEEAVVYGV------EVPGT 500
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 30.1 bits (67), Expect = 0.13
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+S +LEN +M V + AVV +P E P A VV + + T +E++ ++
Sbjct: 422 ISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE-KPTPEELNEHLLKA 477
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 29.1 bits (66), Expect = 0.26
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE 79
NP G ++ E+ ++ +I V D VVG E FV + GV L +
Sbjct: 498 NPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLDD 550
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 28.3 bits (64), Expect = 0.57
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 46 AGVADVAVVGVPDTLSG 62
AG+ D A+VG D+L
Sbjct: 176 AGLCDAAIVGGVDSLCR 192
>gnl|CDD|224465 COG1548, COG1548, Predicted transcriptional regulator/sugar
kinase [Transcription / Carbohydrate transport and
metabolism].
Length = 330
Score = 28.2 bits (63), Expect = 0.57
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 36 TELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVE 76
LE + +I +V VGV ++ E+ AF K GVE
Sbjct: 39 DRLEETLKEIVHKDNVDYVGV--VMTAELADAFKTKAEGVE 77
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 28.0 bits (63), Expect = 0.66
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGE---VPKAFVVKKPGVELTEQEISSY 85
++ E+E + I GVA+ AVV +G+ V A++V PG + +++ +
Sbjct: 363 RIELGEIEAALRSIPGVAE-AVVVAIGDAAGDRQLV--AYIVADPGAAIDIEDLRAR 416
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase
subunit beta/beta'; Reviewed.
Length = 2890
Score = 28.0 bits (62), Expect = 0.66
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 28 NPAGKVSPTELENIIMQIAGVADVAVVG----VPDTLSGEVPKAFVVKKPGVELTEQEIS 83
+P G++ T E ++ I G VV P +L G V V K G E + +S
Sbjct: 898 SPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLS 957
Query: 84 SYVEPK 89
+Y E K
Sbjct: 958 AYEEEK 963
>gnl|CDD|192909 pfam11998, DUF3493, Protein of unknown function (DUF3493). This
family of proteins is functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 79 to 331
amino acids in length.
Length = 75
Score = 26.5 bits (59), Expect = 0.88
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 8 SVAPYKKL----------AGGVKFLETIPRNPAGKVSPTELENIIMQIAGVA 49
+ AP++ L + G+ + R AG L N+ +QI +A
Sbjct: 13 AQAPFRGLRRFLYLAFAASAGLGLFIMLFRLIAGPDLLETLPNLAIQIGALA 64
>gnl|CDD|188067 TIGR00590, pcna, proliferating cell nuclear antigen (pcna). All
proteins in this family for which functions are known
form sliding DNA clamps that are used in DNA replication
processes. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 259
Score = 27.3 bits (61), Expect = 0.89
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 32 KVSPTELENIIMQIAGVADVAVV-----GVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
++ +E I ++ +D V+ GV + G++ V K + ++E + +
Sbjct: 138 EMPSSEFARICRDLSQFSDSVVISCTKEGVKFSAKGDIGSGNVKLKQTSDTDKEEEAVTI 197
Query: 87 EPKKPV 92
E K+PV
Sbjct: 198 EMKQPV 203
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 26.8 bits (60), Expect = 1.5
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
E+E + GVAD VV + + A+VV K G + + + + P
Sbjct: 357 EIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEALRAALRATLP 411
>gnl|CDD|219138 pfam06690, DUF1188, Protein of unknown function (DUF1188). This
family consists of several hypothetical archaeal
proteins of around 260 residues in length which seem to
be specific to Methanobacterium, Methanococcus and
Methanopyrus species. The function of this family is
unknown.
Length = 252
Score = 26.6 bits (59), Expect = 1.7
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 15 LAGGVKFLETIPRNPAGKVSPTELE-NIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKP 73
L G+KF+E+I + T ++I+ + G+ V+ P+ LS PK +V+ P
Sbjct: 80 LNEGIKFMESI--------NGTPGNPDLIVDLTGLGGVS----PEELSKLNPKVLIVEDP 127
Query: 74 GVELTEQEISSY 85
+ +++ I
Sbjct: 128 KGDGSDKTIMEI 139
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 26.8 bits (59), Expect = 1.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
++ E+E+ ++ A+ AVVG+ + G+ AFV GV +E+ S +
Sbjct: 545 RIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLI 599
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 26.7 bits (59), Expect = 2.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 33 VSPTELENIIMQIAGVADVAVVGV 56
VS E+ +++ I VA+ V GV
Sbjct: 371 VSTGEVADVLGAIPSVAEANVYGV 394
>gnl|CDD|217755 pfam03837, RecT, RecT family. The DNA single-strand annealing
proteins (SSAPs), such as RecT, Red-beta, ERF and
Rad52, function in RecA-dependent and RecA-independent
DNA recombination pathways. This family includes
proteins related to RecT.
Length = 193
Score = 26.1 bits (58), Expect = 2.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 22 LETIPRNPAGKVSPTELENIIMQ 44
L T+ NP K +P + +MQ
Sbjct: 8 LTTLKNNPLAKCNPESVLAALMQ 30
>gnl|CDD|225649 COG3107, LppC, Putative lipoprotein [General function prediction
only].
Length = 604
Score = 26.3 bits (58), Expect = 2.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 11 PYKKLAGGVKFLETIPRNPAGKVSPTELENII-MQIAGVADVAV 53
P + AG + + P++PA K+ PT L N+ A + +A+
Sbjct: 219 PPQLKAGIEDWQKRYPQHPAAKMLPTALTNLKNFSQASPSKIAL 262
>gnl|CDD|131990 TIGR02945, SUF_assoc, FeS assembly SUF system protein. Members
of this family belong to the broader Pfam family
pfam01883, or Domain of Unknown Function DUF59. Many
members of DUF59 are candidate ring hydroxylating
complex subunits. However, members of the narrower
family defined here all are found in genomes that carry
the FeS assembly SUF system. For 70 % of these species,
the member of this protein family is found as part of
the SUF locus, usually immediately downstream of the
sufS gene [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 99
Score = 25.3 bits (56), Expect = 3.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 24 TIPRNPAGKVSPTELENIIMQIAGVADVAV 53
T P P P E+EN + + GV V V
Sbjct: 46 TAPNCPVAGSMPGEVENAVRAVPGVGSVTV 75
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 25.9 bits (58), Expect = 4.0
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 44 QIAGVADVAVVG--VPDTLSGEVPKAFVVKKPGVELTE 79
+ V D V+G PD +P FVV GV L +
Sbjct: 542 ALPEVLDSLVIGQEWPDG-DVRMP-LFVVLAEGVTLDD 577
>gnl|CDD|226504 COG4017, COG4017, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 254
Score = 25.6 bits (56), Expect = 4.3
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 15 LAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPG 74
L VKF + + G+V ++I+ + G+ + P+ L+ PK F+V+ P
Sbjct: 83 LPNNVKFRNLL-KFIRGEV------DLIVDLTGLGGIE----PEFLAKFNPKVFIVEDPK 131
Query: 75 VELTEQEISSY 85
+ + +I Y
Sbjct: 132 GNVFDVDIYEY 142
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 25.5 bits (56), Expect = 5.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 17 GGVKFLETIPRNPAGK-VSPTELENIIMQIAGVADVAVVGV 56
G K L T+ AG+ + PTE+E + Q+ GV + AVV V
Sbjct: 415 GRAKELITV----AGRNIFPTEIERVAAQVRGVREGAVVAV 451
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 25.4 bits (56), Expect = 5.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 56 VPDTLSGEVPKA 67
VPD L EVPKA
Sbjct: 120 VPDPLFREVPKA 131
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 25.0 bits (55), Expect = 6.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 37 ELENIIMQIAGVADVAVVGV--PDTL---SGEVPKAFVV--KKPGVELTEQEISS 84
EL I+ I GV V V D+L + P A VV KPG L+ +++ +
Sbjct: 139 ELARTIVAIDGVKAARVHLVLPKDSLFVRDQQPPSASVVLKLKPGRNLSREQVRA 193
>gnl|CDD|216422 pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has
been shown to bind preferentially to dsRNA. The domain
is found in SUA5 as well as HypF and YrdC. It has also
been shown to be required for telomere recombniation in
yeast.
Length = 178
Score = 24.8 bits (55), Expect = 6.5
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 28 NPAGKVSPTELENIIMQIAGVADVAV------VGVPDT 59
N +G+ S T+ E ++ ++ G+ D+ + VGV T
Sbjct: 126 NLSGEPSATDAEEVLEELGGIVDLILDGGRIPVGVDST 163
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 24.8 bits (55), Expect = 7.8
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPK---AFVVKKPGVELTEQEISSYVEPK 89
+ E+E ++Q GV + AV+ D K A+VV L E+ +++ +
Sbjct: 391 IELGEIEQALLQHPGVREAAVLVRED---AAGDKRLVAYVV--ARGALDAAELRAHLAER 445
Query: 90 KP 91
P
Sbjct: 446 LP 447
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 24.8 bits (54), Expect = 8.8
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 28 NPAG-KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE 79
NP G ++ E+ N + ++ V + +G G FV PG L +
Sbjct: 526 NPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDD 578
>gnl|CDD|183716 PRK12744, PRK12744, short chain dehydrogenase; Provisional.
Length = 257
Score = 24.7 bits (54), Expect = 9.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 51 VAVVGVPDTLSGEVPKAFVVKKPGVELTEQE 81
A G PD V K V+KKP VE++E E
Sbjct: 84 KAAFGRPDIAINTVGK--VLKKPIVEISEAE 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.132 0.357
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,803,208
Number of extensions: 405953
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 186
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.0 bits)