RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12100
(93 letters)
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 83.9 bits (208), Expect = 1e-20
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
V+P ELE +++ + DVAVV + + +GEVP AFVVK EL+E ++ +V +
Sbjct: 491 VAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ 547
Score = 42.7 bits (101), Expect = 3e-06
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
V YK++ V F E+IP+ P+GK+
Sbjct: 548 VVFYKRI-NKVFFTESIPKAPSGKI 571
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 83.4 bits (207), Expect = 1e-20
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
V+P ELE+I++Q + D V G+PD +GE+P A VV + G +TE+EI YV +
Sbjct: 449 VAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 506
Score = 45.3 bits (108), Expect = 3e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
V KKL GGV F++ +P+ GK+
Sbjct: 506 VTTAKKLRGGVVFVDEVPKGLTGKL 530
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 83.4 bits (207), Expect = 1e-20
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
V P ELE++++Q + D V GVPD ++GE+P A VV + G +TE+E+ YV +
Sbjct: 451 VPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQV 508
Score = 45.3 bits (108), Expect = 4e-07
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
V+ K+L GGV+F++ +P+ GK+
Sbjct: 508 VSNAKRLRGGVRFVDEVPKGLTGKI 532
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 81.8 bits (203), Expect = 4e-20
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
V+P ELE +++ ++D AVVG+ D +GEVP AFVVK + TE EI Y+ +
Sbjct: 444 VAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ 500
Score = 39.5 bits (93), Expect = 4e-05
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
V YK++ V F+E IP+ P+GK+
Sbjct: 501 VIFYKRI-KRVFFIEAIPKAPSGKI 524
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 76.9 bits (190), Expect = 3e-18
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV--ELTEQEISSYVEPK 89
++P ELE ++M+ V DVAV+G PD +GEVPKAF+V KP ++ E++I +V +
Sbjct: 448 TIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER 507
Score = 33.3 bits (77), Expect = 0.005
Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
++ YK++ V+F+E +PR +GK+
Sbjct: 508 ISGYKRVRE-VEFVEELPRTASGKL 531
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 75.7 bits (187), Expect = 7e-18
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V P E+E + Q +AD V+GVPD E KA V KPG + ++ +V
Sbjct: 410 VYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFV 463
Score = 28.7 bits (65), Expect = 0.20
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 10 APYK--KLAGGVKFLETIPRNPAGKVSPTEL 38
A YK K V F+E +P++ G + +
Sbjct: 468 ARYKKPKH---VVFVEALPKDAKGAIDRAAV 495
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 74.5 bits (184), Expect = 1e-17
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V P E+E+ I + GV + AV+GVP GE A VV+ G + E ++ +
Sbjct: 408 NVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGL 462
Score = 27.9 bits (63), Expect = 0.37
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 10 APYK--KLAGGVKFLETIPRNPAGKVSPTEL 38
A +K K V F++ +PRN GKV L
Sbjct: 467 AKFKMPKK---VIFVDDLPRNTMGKVQKNVL 494
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 71.8 bits (177), Expect = 2e-16
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
V P E+E++I+ + GV++VAV+G+PD GE+ A VV E++EQ+I Y
Sbjct: 423 VYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYC 475
Score = 29.1 bits (66), Expect = 0.15
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 19 VKFLETIPRNPAGKV 33
V F E IPRNP GK+
Sbjct: 488 VIFAEAIPRNPTGKI 502
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 71.1 bits (175), Expect = 3e-16
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
+ P+E+E ++ GV +V V+G+ D G+ A VV + G L+ + ++
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFC 465
Score = 28.3 bits (64), Expect = 0.29
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 19 VKFLETIPRNPAGKV 33
L+ +P+N KV
Sbjct: 479 YFILDQLPKNALNKV 493
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 69.9 bits (172), Expect = 7e-16
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
+ P ++E + Q G++D VG PD G+VPK + V + + ++ ++ +Y+
Sbjct: 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI--SKAQLIAYL 459
Score = 28.7 bits (65), Expect = 0.24
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 10 APYK--KLAGGVKFLETIPRNPAGKV 33
A YK K + ++T+P GK+
Sbjct: 464 AKYKVPKH---FEKVDTLPYTSTGKL 486
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 69.1 bits (170), Expect = 1e-15
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPK 89
+S +LEN +M V + AVV +P E P A VV + E+ ++
Sbjct: 445 ISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 501
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 68.4 bits (168), Expect = 2e-15
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVV-KKPGVELTEQEISSYV 86
K+ E+EN +++ V + AV G PD GE A++V P ++ +V
Sbjct: 415 KIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHV 470
Score = 29.1 bits (66), Expect = 0.16
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 19 VKFLETIPRNPAGKVSPTEL 38
V++L+ +PRN GK+ L
Sbjct: 483 VRYLDAVPRNDMGKIMKRAL 502
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 66.1 bits (162), Expect = 1e-14
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
K++ E+EN++++ V A+V + D L GE A++V K L ++ +
Sbjct: 443 KIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP--LRAVQVRRF 494
Score = 28.4 bits (64), Expect = 0.25
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 5 KALSVAPYK--KLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSG 62
+ +A +K V+ ++++P GKV +L + A ++ L
Sbjct: 496 REQGIAEFKLPDR---VECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALRE 552
Query: 63 EVPKAFVV 70
+
Sbjct: 553 VILPLLDE 560
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 66.0 bits (162), Expect = 2e-14
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSY 85
KV+ E+EN ++ V D A+V +PD GE F++ + E+ ++
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAF 491
Score = 25.6 bits (57), Expect = 2.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 5 KALSVAPYK--KLAGGVKFLETIPRNPAGKVSPTEL 38
+ +A YK V+F+E+ P+ GKVS L
Sbjct: 493 RERGLAAYKIPDR---VEFVESFPQTGVGKVSKKAL 525
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 66.0 bits (162), Expect = 2e-14
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVE 87
K++ E+E +I+ V A+V + D GE AF+V + +E
Sbjct: 448 KIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLME 503
Score = 24.4 bits (54), Expect = 6.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 19 VKFLETIPRNPAGKVSPTEL 38
+K +E++P GKV +L
Sbjct: 515 IKLIESLPLTAVGKVDKKQL 534
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 60.3 bits (147), Expect = 2e-12
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 33 VSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQE 81
+ P+E+EN +M+ V + AV+ PD + GEV KAFVV + E
Sbjct: 466 IGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPE 514
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 59.1 bits (144), Expect = 4e-12
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGV---ELTEQEISSYV 86
VSP E+E +++Q V + AVVGV +AFVV K E+ +E+ ++V
Sbjct: 438 YVSPVEVEMVLVQHDAVLEAAVVGVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFV 494
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 58.7 bits (143), Expect = 6e-12
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQ---EISSYV 86
KV P E+E+ ++Q V + A+ GVPD + G+V KA +V ++ E+ +V
Sbjct: 484 KVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHV 541
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 41.0 bits (97), Expect = 1e-05
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
E+E I++ VA+ AVVG D L+G+ AFVV K + + KK
Sbjct: 540 EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKK 593
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 39.9 bits (94), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 36 TELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE---QEISSYV 86
E+E+ ++ +A+ AVVG+P + G+ A+V G E + E+ ++V
Sbjct: 530 AEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWV 583
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A
{Streptococcus mutans}
Length = 295
Score = 28.8 bits (64), Expect = 0.19
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 28 NPAGKVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAF-----------VVKKPGVE 76
NP+GK + ++E I +I + D+ + S + K +V K G
Sbjct: 190 NPSGKGNRGKVEGIGERIESMVDLVIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKL 249
Query: 77 LTEQEISSYVEPKKPVL 93
+ +Q S PV+
Sbjct: 250 IPQQGADSRSVEPCPVV 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.41
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 55 GVPDTLSGEVPKAFVVKKPGVELTEQE----ISSYVEPKKPVL 93
V D LS + + LT E + Y++ + L
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 27.2 bits (61), Expect = 0.61
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 46 AGVADVAVVGVPDTLSGEVPKAFVVKK--PGVELTEQE 81
+ AD+ ++ +T + ++ F+VKK PG++ T+
Sbjct: 209 STFADLLIIFARNTTTNQI-NGFIVKKDAPGLKATKIP 245
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium; 2.09A {Plasmodium falciparum}
Length = 244
Score = 27.1 bits (61), Expect = 0.64
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 16/49 (32%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIAGV---------ADVAVVGVPD 58
F E I E I GV +VA++ D
Sbjct: 192 FFFTEPIQ-------DLLETCTRIKMTTGVVDHGIFVNMTNVALISKHD 233
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.68
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 3 EEKALSVAPYKKLAGGVKFLETIPRN-PAGKVSPTELE 39
E++AL KKL +K + PA + T +E
Sbjct: 18 EKQAL-----KKLQASLKLYA--DDSAPALAIKAT-ME 47
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 26.8 bits (60), Expect = 1.1
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 4 EKALSVAPYKKLAGGVKFLETIPR--NPAGKVSPTELENIIMQIAGVADVAVV 54
E+ LS VKF+ + NPAG + E +++IA D+ +V
Sbjct: 173 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIV 225
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 1.8
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 22/62 (35%)
Query: 35 PTELENIIMQIAGVADVAVVGVPDTLS------GEVPKAFVVKKPGVELTEQEISSYVEP 88
P E + + G A + +P L G++P + +Y
Sbjct: 959 PETGEYSVKLLKG----ATLYIPKALRFDRLVAGQIPTGW------------NAKTYGIS 1002
Query: 89 KK 90
Sbjct: 1003 DD 1004
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 25.9 bits (58), Expect = 1.9
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 9/33 (27%)
Query: 35 PTELENIIMQIAGV---------ADVAVVGVPD 58
P N++ GV + +V D
Sbjct: 184 PIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKD 216
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structu genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 26.0 bits (58), Expect = 2.0
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Query: 35 PTELENIIMQIAGV----------ADVAVVGVPD 58
P +LE + QI GV AD ++ D
Sbjct: 185 PLKLETELNQITGVVTNGIFALKPADTVIMATKD 218
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 25.9 bits (58), Expect = 2.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 35 PTELENIIMQIAGV---------ADVAVVGVPD 58
P ++E + I GV AD+ +VG +
Sbjct: 190 PLDMEIELNTIPGVIENGIFADIADIVIVGTRE 222
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative,
MCSG, midwest center for structural genomics; HET: ABF;
1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB:
1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Length = 219
Score = 25.6 bits (57), Expect = 2.4
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 35 PTELENIIMQIAGV----------ADVAVVGVPD 58
P +EN I I GV ADVA++G PD
Sbjct: 179 PIAMENAINAIPGVVTVGLFANRGADVALIGTPD 212
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 25.6 bits (57), Expect = 2.4
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 10/34 (29%)
Query: 35 PTELENIIMQIAGV----------ADVAVVGVPD 58
P LE I GV AD+ ++G
Sbjct: 196 PRALEAAINGWPGVVTVGLFAQRGADLCLLGTEH 229
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Length = 226
Score = 25.1 bits (56), Expect = 3.1
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 35 PTELENIIMQIAGV--------ADVAVVGVPD 58
ELE I I GV D +VG
Sbjct: 188 AIELEKEINNIPGVVENGIFTKVDKVLVGTKK 219
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 25.2 bits (56), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 35 PTELENIIMQIAGV----------ADVAVVGVPD 58
P E+E + +AGV ADV +VG P+
Sbjct: 180 PVEIEKELNNVAGVVTNGIFALRGADVVIVGTPE 213
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 25.1 bits (56), Expect = 3.2
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 35 PTELENIIMQIAGV---------ADVAVVGVPD 58
P L +++I GV A A+V P
Sbjct: 188 PLGLHRALLEIPGVVETGLFVGMATRALVAGPF 220
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae}
Length = 264
Score = 24.9 bits (55), Expect = 3.9
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 9/33 (27%)
Query: 35 PTELENIIMQIAGV---------ADVAVVGVPD 58
P +L I + GV A A G D
Sbjct: 218 PRKLHREIKLLVGVVETGLFIDNASKAYFGNSD 250
>3up9_A Putative uncharacterized protein; membrane lipoprotein,
L-methionine binding protein, NLPA LIP structural
genomics; HET: PG4 PE4; 2.35A {Actinomyces
odontolyticus}
Length = 245
Score = 24.9 bits (55), Expect = 4.1
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 51 VAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP 88
V P + G++L E + YV+P
Sbjct: 11 VGATPSPHAKILTYINDNLAADAGIKLDIVEYTDYVQP 48
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5,
PSI, protein structure initiative, midwest center for
structural genomics; 2.00A {Escherichia coli} SCOP:
d.115.1.1
Length = 188
Score = 24.8 bits (55), Expect = 5.1
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 28 NPAGKVSPTELENIIMQIAGVADV-----AVVGVP----DTLSGEV 64
N +G ++ + Q V P D L+GE+
Sbjct: 141 NLSGLPPCRTVDEVRAQFGAAFPVVPGETGGRLNPSEIRDALTGEL 186
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene
regulation, structural genomics, PSI; NMR
{Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Length = 89
Score = 24.2 bits (53), Expect = 5.5
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 15 LAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGV 56
+A G+ L + + E + I GV+++ V V
Sbjct: 44 IAFGLVALNVMVVVGDAEGGTEAAEESLSGIEGVSNIEVTDV 85
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 24.5 bits (54), Expect = 6.0
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 35 PTELENIIMQIAGV---------ADVAVVGVPD 58
P L ++ I GV A A+V + D
Sbjct: 212 PKLLSEALLAIPGVVEHGLFLGLASRAIVAMAD 244
>3q87_A Putative uncharacterized protein ECU08_1170;
SAM-methyltransferase, methyltransferase, methylation,
trans activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 125
Score = 24.2 bits (52), Expect = 6.5
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 74 GVELTEQEISSYVE 87
G EL+EQ+ISS+VE
Sbjct: 65 GRELSEQDISSFVE 78
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 24.3 bits (53), Expect = 7.2
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 28 NPAGKVSPTELENIIMQIAGVADVA-------VVGVPDTLSGEVPKAFVVKKPGVELTEQ 80
N +GK E + + G+AD V + D++ E + + V
Sbjct: 235 NLSGKPPAISNEQALEDLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALA 294
Query: 81 EISSY 85
+
Sbjct: 295 LPPGF 299
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 24.1 bits (53), Expect = 7.4
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 58 DTLSGEVPKAFVVKKPGVE-LTEQEISSYVE 87
D+ SG+ + + + +E+ +
Sbjct: 168 DSASGDGIDVVKITEDEFYQYSPEEVEQILA 198
>3tqw_A Methionine-binding protein; transport and binding proteins,
transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Length = 240
Score = 24.1 bits (53), Expect = 7.5
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 51 VAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEP 88
V + P+T EV K + + G+ + S Y P
Sbjct: 7 VGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTP 44
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus
radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Length = 305
Score = 24.0 bits (53), Expect = 7.9
Identities = 8/12 (66%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
Query: 49 ADVAVVGVP-DT 59
ADVA +GVP D
Sbjct: 29 ADVAALGVPFDI 40
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 24.0 bits (53), Expect = 8.3
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 37 ELENIIMQIAGVADVAVVGVPDTLSGEVPK--AFVVKKPGVELTEQEISSYVE 87
++ + Q VA V + +V A++V K GV+ +
Sbjct: 417 DVSQQLNQSPMVASAVAVPRYNK-EHKVQNLLAYIVVKDGVKERFDRELELTK 468
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural
genomics; NMR {Methanothermobacterthermautotrophicus}
SCOP: d.115.1.1
Length = 208
Score = 24.0 bits (53), Expect = 9.2
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 28 NPAGKVSPTELENIIMQIAGVADV-----AVVGVPDT---LSGEVP 65
N +GK LE I+ + V V + P T L+ P
Sbjct: 142 NISGKPPSPRLEEIVRDLDAVDLVLDAGDCLDMEPSTVIDLTVNPP 187
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 24.1 bits (53), Expect = 9.3
Identities = 5/12 (41%), Positives = 7/12 (58%), Gaps = 1/12 (8%)
Query: 49 ADVAVVGVP-DT 59
V ++GVP D
Sbjct: 35 LQVGLIGVPWDG 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.132 0.357
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,405,409
Number of extensions: 77328
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 80
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)