RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12100
(93 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 69.5 bits (169), Expect = 3e-16
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
+V+P ELE+I++Q + D V G+PD +GE+P A VV + G +TE+EI YV +
Sbjct: 445 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 504
Score = 36.0 bits (82), Expect = 3e-04
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ 44
V KKL GGV F++ +P+ GK+ ++ I+++
Sbjct: 503 VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 538
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 68.9 bits (167), Expect = 7e-16
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKK 90
+ P+E+E ++ GV +V V+G+ D G+ A VV + G L+ + ++ +
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Score = 29.2 bits (64), Expect = 0.061
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 KALSVAPYKKLAGGVKFLETIPRNPAGKVSPTEL 38
++ +A +K+ L+ +P+N KV +L
Sbjct: 466 RSSELADFKRPKR-YFILDQLPKNALNKVLRRQL 498
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 62.7 bits (151), Expect = 1e-13
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYV 86
KV+ E+EN ++ V D A+V +PD GE F++ + E+ +++
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFL 492
Score = 31.1 bits (69), Expect = 0.014
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 5 KALSVAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQ--IAG 47
+ +A YK + V+F+E+ P+ GKVS L I + +AG
Sbjct: 493 RERGLAAYK-IPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 61.1 bits (147), Expect = 4e-13
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEISSYVEPKKP 91
+S +LEN +M V + AVV +P E P A VV + E+ ++
Sbjct: 437 WISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFA 496
Score = 27.2 bits (59), Expect = 0.27
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
A ++ L F E IPR AGK
Sbjct: 495 FAKWQ-LPDAYVFAEEIPRTSAGKF 518
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 60.8 bits (147), Expect = 4e-13
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTEQEIS 83
++ E+E+ ++ +A+ AVVG+P + G+ A+V G E + + +
Sbjct: 522 RLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 573
Score = 27.7 bits (61), Expect = 0.19
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLS 61
+ P + + +++P+ +GK+ L I D + +G TL+
Sbjct: 583 IGPLATPDV-LHWTDSLPKTRSGKIMRRILRKIAA-----GDTSNLGDTSTLA 629
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 60.3 bits (145), Expect = 6e-13
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE------QEISSY 85
+V E+E+I+++ +++ AV D A+ V + + L + +E+ +Y
Sbjct: 423 RVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTY 482
Query: 86 VEPKK 90
+ P
Sbjct: 483 MIPSY 487
Score = 27.2 bits (59), Expect = 0.27
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKV 33
+ Y + L+ +P GK+
Sbjct: 479 LPTYMIPSY-FIQLDKMPLTSNGKI 502
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 59.9 bits (144), Expect = 1e-12
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 32 KVSPTELENIIMQIAGVADVAVVGVPDTLSGEVPKAFVVKKPGVELTE 79
++S E+E I++ VA+ AVVG D L+G+ AFVV K +
Sbjct: 512 RLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST 559
Score = 27.9 bits (61), Expect = 0.19
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 9 VAPYKKLAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGVPDTLS 61
+ P+ + ++ +P+ +GK+ L I +AG +D +G TLS
Sbjct: 580 IGPFAAPKL-IILVDDLPKTRSGKIMRRILRKI---LAGESD--QLGDVSTLS 626
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 89
Score = 25.0 bits (55), Expect = 0.85
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 15 LAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADVAVVGV 56
+A G+ L + + E + I GV+++ V V
Sbjct: 44 IAFGLVALNVMVVVGDAEGGTEAAEESLSGIEGVSNIEVTDV 85
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId:
1299]}
Length = 303
Score = 24.9 bits (53), Expect = 1.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 49 ADVAVVGVP 57
ADVA +GVP
Sbjct: 27 ADVAALGVP 35
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
5693]}
Length = 298
Score = 24.5 bits (52), Expect = 2.8
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 49 ADVAVVGVP 57
AD+ ++G P
Sbjct: 18 ADIVIIGFP 26
>d2j7qa1 d.3.1.20 (A:1-232) Tegument protein M48; N-terminal domain
{Murine cytomegalovirus (MCMV) [TaxId: 10366]}
Length = 232
Score = 23.6 bits (51), Expect = 3.8
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 21 FLETIPRNPAGKVSPTELENIIMQIAGVADVA 52
+ +SP+EL IM D+
Sbjct: 197 LVYFTRCRT-TLISPSELLVQIMDQYKDPDID 227
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium
sporotrichioides [TaxId: 5514]}
Length = 354
Score = 23.3 bits (50), Expect = 5.6
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 15 LAGGVKFLETIPRNPAGKVSPTELENIIMQIAGVADV-AVVGVPDTLSGEVPKAFVVKKP 73
L V+ LE I + +EN+ A A L + + +
Sbjct: 10 LNTTVRLLEYIRYRDSNYTREERIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQT 69
Query: 74 GVELTEQEISSYVEPKKPVL 93
V + S+ + K +
Sbjct: 70 IVGMVVY---SWAKVSKECM 86
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga
maritima [TaxId: 2336]}
Length = 102
Score = 22.5 bits (48), Expect = 7.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 24 TIPRNPAGKVSPTELENIIMQIAGVADVAV 53
T P P + ++ E I +I GV +V V
Sbjct: 50 TTPMCPLAGMILSDAEEAIKKIEGVNNVEV 79
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 22.5 bits (48), Expect = 8.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 19 VKFLETIPRNPAGKVSPTELENIIMQIAGVADVAV 53
V+ T P P + + ++ GV +V V
Sbjct: 40 VRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEV 74
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Escherichia coli [TaxId: 562]}
Length = 72
Score = 22.0 bits (47), Expect = 9.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 35 PTELENIIMQIAGVADV 51
P +EN I I GV V
Sbjct: 53 PIAMENAINAIPGVVTV 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.132 0.357
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 327,337
Number of extensions: 13126
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 28
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)