BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12101
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53568|CEBPG_MOUSE CCAAT/enhancer-binding protein gamma OS=Mus musculus GN=Cebpg PE=1
SV=1
Length = 150
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 46/54 (85%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61
AVK+SR+KS+ K Q+T++RVN+LK EN+ LE KIK+L++ELS LK+LFL HA S
Sbjct: 75 AVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHAHS 128
>sp|P53567|CEBPG_HUMAN CCAAT/enhancer-binding protein gamma OS=Homo sapiens GN=CEBPG PE=1
SV=1
Length = 150
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 45/52 (86%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59
AVK+SR+KS+ K Q+T++RVN+LK EN+ LE KIK+L++ELS LK+LFL HA
Sbjct: 75 AVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHA 126
>sp|P26801|CEBPG_RAT CCAAT/enhancer-binding protein gamma OS=Rattus norvegicus GN=Cebpg
PE=2 SV=2
Length = 150
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 45/52 (86%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59
AVK+SR+KS+ K Q+T++RVN+LK EN+ LE KIK+L++ELS LK+LFL HA
Sbjct: 75 AVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHA 126
>sp|Q3T0B9|CEBPG_BOVIN CCAAT/enhancer-binding protein gamma OS=Bos taurus GN=CEBPG PE=2
SV=1
Length = 149
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 45/52 (86%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59
AVK+SR+KS+ K Q+T++RVN+LK EN+ LE KIK+L++ELS LK+LFL HA
Sbjct: 75 AVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHA 126
>sp|Q05826|CEBPB_CHICK CCAAT/enhancer-binding protein beta OS=Gallus gallus GN=CEBPB PE=2
SV=1
Length = 328
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++++ ET +V +L EN+ L++K++ LSRELS L+NLF
Sbjct: 267 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 314
>sp|P17676|CEBPB_HUMAN CCAAT/enhancer-binding protein beta OS=Homo sapiens GN=CEBPB PE=1
SV=2
Length = 345
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++++ ET +V +L EN+ L++K++ LSRELS L+NLF
Sbjct: 284 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 331
>sp|P28033|CEBPB_MOUSE CCAAT/enhancer-binding protein beta OS=Mus musculus GN=Cebpb PE=1
SV=1
Length = 296
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++++ ET +V +L EN+ L++K++ LSRELS L+NLF
Sbjct: 235 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 282
>sp|P21272|CEBPB_RAT CCAAT/enhancer-binding protein beta OS=Rattus norvegicus GN=Cebpb
PE=2 SV=1
Length = 297
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++++ ET +V +L EN+ L++K++ LSRELS L+NLF
Sbjct: 236 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 283
>sp|O02755|CEBPB_BOVIN CCAAT/enhancer-binding protein beta OS=Bos taurus GN=CEBPB PE=3
SV=1
Length = 348
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++++ ET +V +L EN+ L++K++ LSRE+S L+NLF
Sbjct: 287 AVRKSRDKAKMRNLETQHKVLELTGENERLQKKVEQLSREVSTLRNLF 334
>sp|P49716|CEBPD_HUMAN CCAAT/enhancer-binding protein delta OS=Homo sapiens GN=CEBPD PE=1
SV=2
Length = 269
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + QE +++ +L EN+ L ++++ L+R+L+ L+ F
Sbjct: 204 AVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFF 251
>sp|Q9N0J3|CEBPD_SHEEP CCAAT/enhancer-binding protein delta OS=Ovis aries GN=CEBPD PE=3
SV=1
Length = 255
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 35/48 (72%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + QE +++ +L EN+ L+++++ L+R+L+ L+ F
Sbjct: 190 AVRKSRDKAKRRNQEMQQKLVELSAENEKLQQRVEQLTRDLAGLRRFF 237
>sp|O02756|CEBPD_BOVIN CCAAT/enhancer-binding protein delta OS=Bos taurus GN=CEBPD PE=2
SV=1
Length = 256
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 35/48 (72%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + QE +++ +L EN+ L+++++ L+R+L+ L+ F
Sbjct: 191 AVRKSRDKAKRRNQEMQQKLVELSAENEKLQQRVEQLTRDLAGLRRFF 238
>sp|P53566|CEBPA_MOUSE CCAAT/enhancer-binding protein alpha OS=Mus musculus GN=Cebpa PE=1
SV=2
Length = 359
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V +L ++ND L ++++ LSREL L+ +F
Sbjct: 296 AVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIF 343
>sp|P49715|CEBPA_HUMAN CCAAT/enhancer-binding protein alpha OS=Homo sapiens GN=CEBPA PE=1
SV=3
Length = 358
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V +L ++ND L ++++ LSREL L+ +F
Sbjct: 295 AVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIF 342
>sp|P05554|CEBPA_RAT CCAAT/enhancer-binding protein alpha OS=Rattus norvegicus GN=Cebpa
PE=1 SV=3
Length = 358
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V +L ++ND L ++++ LSREL L+ +F
Sbjct: 295 AVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIF 342
>sp|O02754|CEBPA_BOVIN CCAAT/enhancer-binding protein alpha OS=Bos taurus GN=CEBPA PE=3
SV=1
Length = 353
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V +L ++ND L ++++ LSREL L+ +F
Sbjct: 290 AVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIF 337
>sp|Q00322|CEBPD_MOUSE CCAAT/enhancer-binding protein delta OS=Mus musculus GN=Cebpd PE=1
SV=2
Length = 268
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + QE +++ +L EN+ L ++++ L+R+L+ L+ F
Sbjct: 204 AVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFF 251
>sp|Q03484|CEBPD_RAT CCAAT/enhancer-binding protein delta OS=Rattus norvegicus GN=Cebpd
PE=2 SV=1
Length = 268
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + QE +++ +L EN+ L ++++ L+R+L+ L+ F
Sbjct: 204 AVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLASLRQFF 251
>sp|Q15744|CEBPE_HUMAN CCAAT/enhancer-binding protein epsilon OS=Homo sapiens GN=CEBPE
PE=1 SV=2
Length = 281
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V + EN+ L +++ L++EL L+NLF
Sbjct: 217 AVRKSRDKAKRRILETQQKVLEYMAENERLRSRVEQLTQELDTLRNLF 264
>sp|P56261|CEBPE_RAT CCAAT/enhancer-binding protein epsilon OS=Rattus norvegicus
GN=Cebpe PE=3 SV=2
Length = 281
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V + EN+ L ++ L++EL L+NLF
Sbjct: 217 AVRKSRDKAKRRIMETQQKVLEYMAENERLRSRVDQLTQELDTLRNLF 264
>sp|Q6PZD9|CEBPE_MOUSE CCAAT/enhancer-binding protein epsilon OS=Mus musculus GN=Cebpe
PE=2 SV=1
Length = 281
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V + EN+ L ++ L++EL L+NLF
Sbjct: 217 AVRKSRDKAKRRIMETQQKVLEYMAENERLRNRVDQLTQELDTLRNLF 264
>sp|O77728|CEBPE_SHEEP CCAAT/enhancer-binding protein epsilon OS=Ovis aries GN=CEBPE PE=2
SV=1
Length = 281
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
AV++SR K++ + ET ++V + EN+ L +++ L++EL L+NLF
Sbjct: 217 AVRKSRDKAKRRILETQQKVLEYMAENERLRSRVEQLTQELDTLRNLF 264
>sp|Q02638|CEBP_DROVI CCAAT/enhancer-binding protein OS=Drosophila virilis GN=slbo PE=3
SV=1
Length = 451
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTN 63
AV++SR K++++++E ERV L E D L ++ ++ ELS K +++ TN
Sbjct: 378 AVRKSREKAKVRSKEVEERVKSLLKEKDALLRQLSEMTNELSLHKQIYMQLMNHTN 433
>sp|Q02637|CEBP_DROME CCAAT/enhancer-binding protein OS=Drosophila melanogaster GN=slbo
PE=1 SV=3
Length = 449
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56
AV++SR K++++++E ERV L E D L ++ ++ EL K +++
Sbjct: 376 AVRKSREKAKVRSREVEERVKSLLKEKDALIRQLGEMTNELQLHKQIYM 424
>sp|Q8W191|HYH_ARATH Transcription factor HY5-like OS=Arabidopsis thaliana GN=HYH PE=1
SV=1
Length = 149
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56
+ +++R + ++ + R N+L+ ND LEEKI L+ E + L+ + +
Sbjct: 91 SAQQARERKKVYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLI 139
>sp|Q16534|HLF_HUMAN Hepatic leukemia factor OS=Homo sapiens GN=HLF PE=2 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
A KRSR R+K + R + L+ EN L +++ L +EL KN+
Sbjct: 238 AAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNIL 285
>sp|Q64709|HLF_RAT Hepatic leukemia factor OS=Rattus norvegicus GN=Hlf PE=2 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
A KRSR R+K + R + L+ EN L +++ L +EL KN+
Sbjct: 238 AAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNIL 285
>sp|Q6SZS5|PYRD_CANGA Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=URA9 PE=3 SV=1
Length = 439
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 1 MAEPYLQ----AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILS 45
+ EP LQ A K+S+V I + T++R N LKT+++ L ++ LS
Sbjct: 301 LTEPELQSIVEAAKKSKVDGIIVSNTTIQRPNTLKTQDETLRNQVGGLS 349
>sp|A8LIJ7|DCUP_DINSH Uroporphyrinogen decarboxylase OS=Dinoroseobacter shibae (strain
DFL 12) GN=hemE PE=3 SV=1
Length = 344
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 17 RIKTQETMERVNKLKTENDM------LEEKIKILSREL 48
R+ T ETME NKLK +++ + E ++ILSREL
Sbjct: 96 RLSTIETMEEFNKLKPADEVHDHLAPIYETVRILSREL 133
>sp|Q8BW74|HLF_MOUSE Hepatic leukemia factor OS=Mus musculus GN=Hlf PE=2 SV=1
Length = 295
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
A KRSR R+K + R + L+ EN L +++ L +EL KN+
Sbjct: 238 AAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNIL 285
>sp|Q06507|ATF4_MOUSE Cyclic AMP-dependent transcription factor ATF-4 OS=Mus musculus
GN=Atf4 PE=1 SV=2
Length = 349
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
A R R K R + + +L+ +N+ L+EK L++E+ +LK+L
Sbjct: 289 AATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLI 336
>sp|Q9ES19|ATF4_RAT Cyclic AMP-dependent transcription factor ATF-4 OS=Rattus
norvegicus GN=Atf4 PE=1 SV=1
Length = 347
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
A R R K R + + +L+ +N+ L+EK L++E+ +LK+L
Sbjct: 287 AATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKDLI 334
>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2
Length = 315
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52
++ +RSR++ + + ++ +RV L EN L ++++ LS E LK
Sbjct: 234 ESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLK 279
>sp|Q06623|HDA3_YEAST HDA1 complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA3 PE=1 SV=1
Length = 655
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 15 KSRIKTQETMERVN----KLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNG 64
KS I T+E E++ +LK END+ EE + LS+ + L+NL + + NG
Sbjct: 588 KSEISTKELNEKIGFLKKELKLENDLNEELVGQLSKTMDNLENLTIPRVRTQNG 641
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3
Length = 1544
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 46 RELSFLKNLFLAHAGSTNGIDMDDIDLESLLADAVDTPPSVPCTSSRSNYNSSSLSTPSF 105
RE+ L++L LA+ G + D+D++ L P + C R +++S ++ PS
Sbjct: 1151 REMEALQSLRLANEGKLLS-PLQDVDIKICLCQKAPAAPMIQCELCRDAFHTSCVAVPSI 1209
>sp|Q28QV8|SYA_JANSC Alanine--tRNA ligase OS=Jannaschia sp. (strain CCS1) GN=alaS PE=3
SV=1
Length = 884
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 7 QAVKRSRVKSRIKTQ--ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNG 64
Q + ++ + + TQ + ++RV LK + LE ++ L REL+ A S NG
Sbjct: 720 QNERMGQLAAELNTQAADVLDRVKALKDDRKKLENEVAQLRRELAMAGGTSAPEAASVNG 779
Query: 65 ID 66
++
Sbjct: 780 VN 781
>sp|Q3ZCH6|ATF4_BOVIN Cyclic AMP-dependent transcription factor ATF-4 OS=Bos taurus
GN=ATF4 PE=1 SV=1
Length = 348
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53
A R R K R + + +L+ +N+ L+EK L++E+ +LK+
Sbjct: 288 AATRYRQKKRAEQEALTGECKELEKKNEALKEKADSLAKEIQYLKD 333
>sp|Q10586|DBP_HUMAN D site-binding protein OS=Homo sapiens GN=DBP PE=1 SV=1
Length = 325
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
+A KRSR R+K + R L+ EN +L +++ + +ELS + +
Sbjct: 267 EAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVL 315
>sp|Q32PF6|DBP_BOVIN D site-binding protein OS=Bos taurus GN=DBP PE=2 SV=2
Length = 325
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
+A KRSR R+K + R L+ EN +L +++ + +ELS + +
Sbjct: 267 EAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVL 315
>sp|Q7Z794|K2C1B_HUMAN Keratin, type II cytoskeletal 1b OS=Homo sapiens GN=KRT77 PE=2 SV=3
Length = 578
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 37 LEEKIKILSRELSFLKNLFL-------AHAGSTNGI-DMDD---IDLESLLADAVDTPPS 85
LE ++ L+ E++FLK LFL H TN I MD+ +DL+S++ DAV T
Sbjct: 285 LESRVDTLTGEVNFLKYLFLTELSQVQTHISDTNVILSMDNNRSLDLDSII-DAVRTQYE 343
Query: 86 VPCTSSR 92
+ S+
Sbjct: 344 LIAQRSK 350
>sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C
OS=Homo sapiens GN=JMJD1C PE=1 SV=2
Length = 2540
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 21 QETMERVNKLKTEND-MLEE---------KIKILSRELSFLKNLFLAHAGSTNGIDMDDI 70
QET ER+NK K E+ +L+E KIK L E + + + + I D+
Sbjct: 1009 QETGERLNKYKEEHRRILQESIDVAPFTTKIKGLEGERENYSRVASSSSSPKSHIIKQDM 1068
Query: 71 DLESLLADAVDTPPSVPCTSSRSNY 95
D+E ++D SVP + +SNY
Sbjct: 1069 DVERSVSDLYKMKHSVPQSLPQSNY 1093
>sp|Q60925|DBP_MOUSE D site-binding protein OS=Mus musculus GN=Dbp PE=2 SV=2
Length = 325
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
+A KRSR R+K + R L+ EN +L +++ + +ELS + +
Sbjct: 267 EAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVL 315
>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2
SV=1
Length = 296
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILS 45
++ +RSR++ + K+ E ER++ L EN +L + ++ +S
Sbjct: 208 ESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRIS 246
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Mus musculus GN=Aimp1 PE=1 SV=2
Length = 310
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLE 73
+K + Q TM KL+ EN L+++I+ L +EL A NG++ + L
Sbjct: 32 LKEKAILQATMREEKKLRVENAKLKKEIEELKQELIL--------AEIHNGVEQVRVRL- 82
Query: 74 SLLADAVDTPPSVPCTSSRSNYNSSSLST 102
TP CT+S S S S++T
Sbjct: 83 -------STPLQTNCTASESVVQSPSVAT 104
>sp|P16443|DBP_RAT D site-binding protein OS=Rattus norvegicus GN=Dbp PE=2 SV=2
Length = 325
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55
+A KRSR R+K + R L+ EN +L +++ + +ELS + +
Sbjct: 267 EAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVL 315
>sp|Q92172|TEF_CHICK Transcription factor VBP OS=Gallus gallus GN=TEF PE=1 SV=2
Length = 319
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDM 67
A KRSR R+K + R L+ EN L ++ L +E+ KN+ + D+
Sbjct: 256 AAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGRCKNIVSKYETRYGPFDL 315
Query: 68 DD 69
D
Sbjct: 316 SD 317
>sp|Q09771|ATF31_SCHPO Transcription factor atf31 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=atf31 PE=3 SV=1
Length = 209
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58
QA ++ R+K + Q ++VN +EN L + L E+ L+ L AH
Sbjct: 133 QAAQKCRIKKKKYLQTLQDQVNYYTSENKELLQSANDLREEIIKLRTLVFAH 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,219,705
Number of Sequences: 539616
Number of extensions: 1209264
Number of successful extensions: 5447
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 5373
Number of HSP's gapped (non-prelim): 117
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)