Query psy12101
Match_columns 105
No_of_seqs 115 out of 223
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:48:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3119|consensus 99.6 8.8E-16 1.9E-20 121.6 8.2 61 2-62 199-259 (269)
2 PF07716 bZIP_2: Basic region 99.3 4E-12 8.6E-17 79.0 6.6 46 2-47 9-54 (54)
3 smart00338 BRLZ basic region l 99.3 7E-12 1.5E-16 79.8 7.5 55 2-56 10-64 (65)
4 PF00170 bZIP_1: bZIP transcri 99.2 3E-10 6.4E-15 72.2 8.0 54 2-55 10-63 (64)
5 KOG4571|consensus 98.6 1.5E-07 3.3E-12 76.8 7.7 58 2-59 232-289 (294)
6 KOG0837|consensus 98.0 1.9E-05 4E-10 64.2 7.5 64 2-65 211-274 (279)
7 KOG3584|consensus 97.7 7.4E-05 1.6E-09 62.0 5.1 48 3-57 297-344 (348)
8 KOG4005|consensus 97.6 0.0002 4.3E-09 58.3 6.9 43 4-46 76-118 (292)
9 KOG4343|consensus 97.0 0.0024 5.1E-08 56.8 6.7 48 4-51 288-335 (655)
10 KOG4196|consensus 96.7 0.022 4.9E-07 42.4 9.2 58 4-61 60-117 (135)
11 KOG1414|consensus 96.3 0.00058 1.2E-08 56.9 -1.5 59 1-59 289-348 (395)
12 PF03131 bZIP_Maf: bZIP Maf tr 96.2 2.5E-05 5.4E-10 53.0 -8.5 49 3-51 36-84 (92)
13 KOG1414|consensus 95.8 0.00037 8E-09 58.0 -4.6 63 1-63 158-224 (395)
14 KOG0709|consensus 95.5 0.018 3.9E-07 50.1 4.3 54 4-57 258-311 (472)
15 KOG3863|consensus 95.0 0.066 1.4E-06 47.9 6.3 56 3-58 496-551 (604)
16 TIGR02449 conserved hypothetic 94.1 0.25 5.3E-06 32.6 5.8 40 18-57 7-46 (65)
17 PRK09413 IS2 repressor TnpA; R 94.1 0.28 6E-06 34.3 6.5 35 26-60 72-106 (121)
18 PF08172 CASP_C: CASP C termin 93.8 0.28 6E-06 39.1 6.8 45 9-53 84-128 (248)
19 KOG4196|consensus 93.4 0.22 4.7E-06 37.2 5.2 35 28-62 77-111 (135)
20 PRK00888 ftsB cell division pr 92.6 0.3 6.6E-06 34.1 4.7 42 16-57 32-73 (105)
21 PRK13922 rod shape-determining 92.3 0.43 9.4E-06 37.2 5.8 36 22-57 73-111 (276)
22 PF00170 bZIP_1: bZIP transcri 92.2 1.8 4E-05 27.0 7.7 46 13-58 14-59 (64)
23 PF06005 DUF904: Protein of un 92.0 0.75 1.6E-05 30.5 5.8 34 20-53 20-53 (72)
24 PRK00888 ftsB cell division pr 91.7 0.81 1.8E-05 32.0 6.1 35 19-53 28-62 (105)
25 PF04977 DivIC: Septum formati 91.3 0.69 1.5E-05 29.0 5.0 40 17-56 23-62 (80)
26 PF02183 HALZ: Homeobox associ 91.2 1.1 2.5E-05 27.2 5.6 33 23-55 10-42 (45)
27 PF12808 Mto2_bdg: Micro-tubul 91.1 0.49 1.1E-05 30.0 4.1 34 12-45 16-49 (52)
28 PF07334 IFP_35_N: Interferon- 90.9 0.59 1.3E-05 31.8 4.5 30 27-56 2-31 (76)
29 PF07047 OPA3: Optic atrophy 3 90.4 0.84 1.8E-05 32.9 5.3 38 9-46 96-133 (134)
30 PF07989 Microtub_assoc: Micro 90.2 0.95 2.1E-05 30.2 5.0 35 25-59 36-70 (75)
31 PRK10884 SH3 domain-containing 90.1 1.3 2.9E-05 34.4 6.5 35 23-57 130-164 (206)
32 PF14197 Cep57_CLD_2: Centroso 89.6 2.4 5.2E-05 27.8 6.5 27 26-52 41-67 (69)
33 PF08826 DMPK_coil: DMPK coile 89.4 2.6 5.6E-05 27.3 6.5 39 15-53 22-60 (61)
34 PF06005 DUF904: Protein of un 89.3 2.8 6.1E-05 27.8 6.7 40 17-56 24-63 (72)
35 PF08172 CASP_C: CASP C termin 88.7 1.2 2.6E-05 35.5 5.5 32 22-53 90-121 (248)
36 PF07716 bZIP_2: Basic region 88.3 4.1 8.9E-05 24.8 6.8 34 20-53 20-53 (54)
37 PF04977 DivIC: Septum formati 88.2 1.6 3.5E-05 27.3 4.9 31 21-51 20-50 (80)
38 PF10018 Med4: Vitamin-D-recep 88.2 4.2 9E-05 30.6 7.8 61 18-78 22-89 (188)
39 PF04728 LPP: Lipoprotein leuc 87.9 1.6 3.4E-05 28.2 4.6 31 26-56 4-34 (56)
40 PRK10803 tol-pal system protei 87.9 1.7 3.8E-05 34.3 5.9 50 18-77 54-103 (263)
41 PF07407 Seadorna_VP6: Seadorn 87.5 0.75 1.6E-05 39.4 3.8 27 28-54 35-61 (420)
42 KOG3335|consensus 87.1 5 0.00011 31.3 7.8 43 12-54 93-135 (181)
43 PF02183 HALZ: Homeobox associ 86.9 2.5 5.4E-05 25.7 4.9 26 22-47 16-41 (45)
44 TIGR02894 DNA_bind_RsfA transc 86.9 3.9 8.5E-05 31.3 7.0 26 27-52 106-131 (161)
45 PF12709 Kinetocho_Slk19: Cent 86.8 3.9 8.4E-05 28.4 6.4 35 20-54 51-85 (87)
46 PRK15422 septal ring assembly 86.7 2.1 4.6E-05 29.4 5.0 31 23-53 23-60 (79)
47 PRK13729 conjugal transfer pil 86.7 10 0.00022 33.4 10.3 48 9-56 66-121 (475)
48 TIGR02894 DNA_bind_RsfA transc 86.7 5.2 0.00011 30.6 7.6 39 19-57 112-150 (161)
49 KOG1318|consensus 86.5 3 6.6E-05 35.9 7.0 48 14-61 286-333 (411)
50 PF12709 Kinetocho_Slk19: Cent 86.3 3.1 6.8E-05 28.9 5.8 30 23-52 47-76 (87)
51 TIGR00219 mreC rod shape-deter 85.7 2.5 5.4E-05 33.9 5.8 33 26-58 67-110 (283)
52 COG2433 Uncharacterized conser 85.5 2.8 6.1E-05 38.1 6.5 41 19-59 423-463 (652)
53 PF01166 TSC22: TSC-22/dip/bun 85.2 1.4 3.1E-05 28.8 3.4 32 25-56 14-45 (59)
54 PRK00295 hypothetical protein; 85.1 8.1 0.00018 25.1 7.4 39 19-57 6-44 (68)
55 PF01166 TSC22: TSC-22/dip/bun 84.7 3.1 6.8E-05 27.2 4.8 27 14-40 17-43 (59)
56 smart00338 BRLZ basic region l 84.6 7.5 0.00016 24.2 7.4 37 22-58 23-59 (65)
57 PF09006 Surfac_D-trimer: Lung 84.2 2.1 4.6E-05 26.7 3.7 27 35-61 2-28 (46)
58 PF13863 DUF4200: Domain of un 84.1 7.6 0.00016 26.6 6.9 44 18-61 67-110 (126)
59 cd07429 Cby_like Chibby, a nuc 83.8 2.9 6.3E-05 30.0 4.8 27 23-49 77-103 (108)
60 TIGR02209 ftsL_broad cell divi 83.5 3.2 7E-05 26.7 4.6 29 18-46 31-59 (85)
61 PRK04406 hypothetical protein; 83.5 8.4 0.00018 25.6 6.7 40 18-57 11-50 (75)
62 PRK13922 rod shape-determining 83.4 2.7 5.9E-05 32.7 4.9 44 25-79 69-112 (276)
63 PRK14127 cell division protein 83.3 4.8 0.0001 28.8 5.8 39 21-59 33-71 (109)
64 PF05377 FlaC_arch: Flagella a 83.2 3 6.5E-05 26.8 4.2 9 23-31 5-13 (55)
65 PF07407 Seadorna_VP6: Seadorn 83.0 3.2 7E-05 35.6 5.5 29 22-52 36-64 (420)
66 PRK00736 hypothetical protein; 82.8 11 0.00023 24.5 7.6 37 19-55 6-42 (68)
67 PF03980 Nnf1: Nnf1 ; InterPr 82.4 2.6 5.7E-05 28.8 4.0 31 17-47 79-109 (109)
68 PF07558 Shugoshin_N: Shugoshi 81.9 2 4.3E-05 26.1 2.9 32 10-41 13-44 (46)
69 PRK02793 phi X174 lysis protei 81.9 7.9 0.00017 25.4 6.0 39 18-56 8-46 (72)
70 PRK00846 hypothetical protein; 81.7 7.7 0.00017 26.2 6.0 36 19-54 14-49 (77)
71 PF11382 DUF3186: Protein of u 81.2 4.4 9.6E-05 32.8 5.6 42 20-61 34-75 (308)
72 COG2919 Septum formation initi 81.2 7.2 0.00016 27.5 6.0 34 22-59 61-94 (117)
73 PF05377 FlaC_arch: Flagella a 81.1 7.3 0.00016 25.0 5.4 23 27-49 16-38 (55)
74 PF10186 Atg14: UV radiation r 80.5 17 0.00037 27.6 8.3 45 12-56 64-108 (302)
75 PF05308 Mito_fiss_reg: Mitoch 80.2 4.5 9.6E-05 32.5 5.2 19 25-43 122-140 (253)
76 PRK10884 SH3 domain-containing 80.2 9.1 0.0002 29.8 6.7 37 16-52 130-166 (206)
77 KOG3584|consensus 80.0 4.9 0.00011 33.9 5.5 50 9-58 288-338 (348)
78 PF13851 GAS: Growth-arrest sp 79.8 8.3 0.00018 29.6 6.4 46 16-61 39-84 (201)
79 PF10186 Atg14: UV radiation r 79.6 11 0.00024 28.6 7.0 44 16-59 61-104 (302)
80 KOG4343|consensus 79.4 2 4.3E-05 38.8 3.2 36 17-52 308-343 (655)
81 PRK02119 hypothetical protein; 79.3 11 0.00023 24.8 6.0 40 18-57 9-48 (73)
82 PRK02119 hypothetical protein; 79.1 15 0.00033 24.1 7.6 34 24-57 22-55 (73)
83 PF14775 NYD-SP28_assoc: Sperm 79.0 9 0.0002 24.5 5.4 34 25-58 26-59 (60)
84 PF15619 Lebercilin: Ciliary p 78.9 4.4 9.4E-05 31.2 4.6 38 24-61 11-48 (194)
85 TIGR00219 mreC rod shape-deter 78.5 5.2 0.00011 32.1 5.1 10 30-39 96-105 (283)
86 PF04111 APG6: Autophagy prote 78.1 9.7 0.00021 31.1 6.6 42 15-56 54-95 (314)
87 smart00340 HALZ homeobox assoc 78.1 5 0.00011 24.8 3.8 20 26-45 13-32 (44)
88 PF10883 DUF2681: Protein of u 77.8 9.4 0.0002 26.4 5.6 26 27-52 32-57 (87)
89 COG2919 Septum formation initi 77.8 5.6 0.00012 28.0 4.6 34 21-54 53-86 (117)
90 PF04849 HAP1_N: HAP1 N-termin 77.8 4.3 9.4E-05 33.7 4.5 33 19-51 161-193 (306)
91 PF11932 DUF3450: Protein of u 77.6 21 0.00046 27.6 8.1 32 26-57 64-95 (251)
92 PRK11239 hypothetical protein; 77.2 5.2 0.00011 31.9 4.7 24 23-46 188-211 (215)
93 KOG1760|consensus 76.9 17 0.00036 27.1 6.9 43 20-62 83-125 (131)
94 PF09744 Jnk-SapK_ap_N: JNK_SA 76.8 28 0.0006 26.1 8.3 44 16-59 73-116 (158)
95 PF06156 DUF972: Protein of un 76.6 10 0.00023 26.7 5.6 17 42-58 39-55 (107)
96 PF11559 ADIP: Afadin- and alp 76.4 19 0.0004 25.7 7.0 41 13-53 47-87 (151)
97 COG3883 Uncharacterized protei 76.2 9.7 0.00021 31.1 6.1 37 20-56 61-97 (265)
98 COG4026 Uncharacterized protei 76.1 18 0.00038 29.8 7.5 37 22-58 167-203 (290)
99 PF10481 CENP-F_N: Cenp-F N-te 76.0 17 0.00036 30.5 7.4 49 10-58 80-128 (307)
100 PRK14872 rod shape-determining 75.9 7.2 0.00016 32.7 5.4 31 25-55 57-87 (337)
101 PF08232 Striatin: Striatin fa 75.3 12 0.00026 27.1 5.8 41 21-61 28-75 (134)
102 PF04102 SlyX: SlyX; InterPro 75.3 14 0.0003 23.8 5.6 42 18-59 4-45 (69)
103 PRK04406 hypothetical protein; 75.2 21 0.00046 23.6 7.6 30 27-56 27-56 (75)
104 PF04102 SlyX: SlyX; InterPro 75.0 19 0.00042 23.1 6.4 37 23-59 16-52 (69)
105 PF13815 Dzip-like_N: Iguana/D 74.9 19 0.00042 25.1 6.7 32 21-52 83-114 (118)
106 PF10779 XhlA: Haemolysin XhlA 74.9 16 0.00035 23.5 5.8 33 21-53 16-48 (71)
107 PF06305 DUF1049: Protein of u 74.3 4.2 9.1E-05 25.1 2.9 23 29-51 45-67 (68)
108 PF06156 DUF972: Protein of un 74.3 28 0.0006 24.6 8.2 33 21-53 25-57 (107)
109 PF06548 Kinesin-related: Kine 74.2 8.2 0.00018 34.1 5.5 36 22-57 445-484 (488)
110 PF13851 GAS: Growth-arrest sp 74.1 35 0.00076 26.1 8.4 43 15-57 90-132 (201)
111 PF10883 DUF2681: Protein of u 74.0 12 0.00027 25.8 5.4 36 24-59 22-57 (87)
112 PRK09413 IS2 repressor TnpA; R 73.9 9.9 0.00021 26.4 5.0 33 21-53 74-106 (121)
113 PF04201 TPD52: Tumour protein 73.8 7.2 0.00016 29.9 4.5 30 32-61 29-58 (162)
114 PRK11239 hypothetical protein; 73.6 7.5 0.00016 31.0 4.7 30 26-55 184-213 (215)
115 PRK13923 putative spore coat p 73.4 24 0.00051 27.2 7.3 40 19-58 112-151 (170)
116 PRK13169 DNA replication intia 73.3 31 0.00067 24.6 8.2 16 42-57 39-54 (110)
117 PF14197 Cep57_CLD_2: Centroso 73.0 17 0.00036 23.8 5.6 9 28-36 29-37 (69)
118 KOG4797|consensus 72.9 10 0.00022 27.9 4.9 31 25-55 67-97 (123)
119 PF09006 Surfac_D-trimer: Lung 72.7 9.4 0.0002 23.8 4.1 36 27-62 1-36 (46)
120 COG1382 GimC Prefoldin, chaper 72.7 27 0.00059 25.4 7.1 43 19-61 71-113 (119)
121 PRK02793 phi X174 lysis protei 72.4 24 0.00052 23.1 7.6 35 24-58 21-55 (72)
122 PF04899 MbeD_MobD: MbeD/MobD 72.2 14 0.0003 24.5 5.0 34 21-54 31-64 (70)
123 PF04420 CHD5: CHD5-like prote 72.0 17 0.00037 26.8 6.0 48 14-61 36-95 (161)
124 PRK13169 DNA replication intia 71.8 16 0.00035 26.1 5.7 34 20-53 24-57 (110)
125 PF12718 Tropomyosin_1: Tropom 71.8 27 0.00058 25.5 7.0 29 27-55 37-65 (143)
126 PF06637 PV-1: PV-1 protein (P 71.6 41 0.00089 29.4 9.0 29 28-56 352-380 (442)
127 TIGR02209 ftsL_broad cell divi 71.5 19 0.00042 23.0 5.6 31 22-52 28-58 (85)
128 PF10224 DUF2205: Predicted co 71.4 29 0.00063 23.6 7.0 45 14-58 19-63 (80)
129 PF10211 Ax_dynein_light: Axon 71.3 35 0.00075 25.9 7.8 39 19-57 121-159 (189)
130 PF12718 Tropomyosin_1: Tropom 71.3 35 0.00077 24.8 7.5 42 18-59 21-62 (143)
131 PF14645 Chibby: Chibby family 70.5 14 0.00029 26.4 5.1 32 27-58 73-104 (116)
132 PF15035 Rootletin: Ciliary ro 70.4 15 0.00032 28.0 5.6 35 19-53 68-102 (182)
133 KOG4010|consensus 70.1 9.2 0.0002 30.4 4.5 31 31-61 43-73 (208)
134 COG3074 Uncharacterized protei 70.1 14 0.0003 25.3 4.8 19 23-41 23-41 (79)
135 PF04999 FtsL: Cell division p 69.8 9.5 0.00021 25.3 4.0 22 23-44 47-68 (97)
136 PF12329 TMF_DNA_bd: TATA elem 69.8 26 0.00055 23.0 5.9 35 23-57 38-72 (74)
137 PF01920 Prefoldin_2: Prefoldi 69.7 28 0.0006 22.7 6.2 39 20-58 64-102 (106)
138 KOG4657|consensus 69.6 21 0.00046 29.0 6.5 46 15-60 83-128 (246)
139 PF15290 Syntaphilin: Golgi-lo 69.3 23 0.00051 29.6 6.8 37 40-77 125-166 (305)
140 PF14645 Chibby: Chibby family 69.2 18 0.00038 25.9 5.4 31 19-49 72-102 (116)
141 PF10205 KLRAQ: Predicted coil 69.2 37 0.00081 24.2 7.0 27 23-49 45-71 (102)
142 PRK04325 hypothetical protein; 68.9 30 0.00065 22.7 7.6 40 18-57 9-48 (74)
143 COG4026 Uncharacterized protei 68.7 25 0.00055 29.0 6.8 48 11-58 135-189 (290)
144 PRK00736 hypothetical protein; 68.5 29 0.00063 22.4 7.2 38 22-59 16-53 (68)
145 PF07412 Geminin: Geminin; In 68.5 14 0.00031 29.1 5.3 11 33-43 126-136 (200)
146 PF15397 DUF4618: Domain of un 68.3 30 0.00066 28.1 7.2 44 12-55 68-111 (258)
147 PF05529 Bap31: B-cell recepto 68.2 20 0.00044 26.5 5.8 28 27-54 156-183 (192)
148 PF07106 TBPIP: Tat binding pr 68.2 17 0.00036 26.5 5.3 22 38-59 115-136 (169)
149 PF06698 DUF1192: Protein of u 68.0 10 0.00022 24.5 3.6 23 36-58 25-47 (59)
150 PF08614 ATG16: Autophagy prot 67.9 19 0.00042 26.9 5.7 27 25-51 116-142 (194)
151 PHA03155 hypothetical protein; 67.5 11 0.00024 27.5 4.1 26 35-60 11-36 (115)
152 PF15058 Speriolin_N: Sperioli 67.4 20 0.00044 28.4 5.9 36 24-60 11-46 (200)
153 PF05103 DivIVA: DivIVA protei 67.3 2.9 6.2E-05 28.7 1.0 33 21-53 28-60 (131)
154 TIGR03752 conj_TIGR03752 integ 67.2 21 0.00045 31.5 6.5 16 40-55 117-132 (472)
155 PF07412 Geminin: Geminin; In 67.2 23 0.0005 27.9 6.1 30 25-54 125-154 (200)
156 PF13600 DUF4140: N-terminal d 67.1 21 0.00045 23.8 5.2 33 19-51 71-103 (104)
157 PF05911 DUF869: Plant protein 66.6 22 0.00048 32.9 6.7 38 12-49 128-165 (769)
158 PF01486 K-box: K-box region; 66.4 20 0.00043 24.1 5.0 27 29-55 72-98 (100)
159 PF11544 Spc42p: Spindle pole 66.4 34 0.00074 23.3 6.1 37 20-56 7-43 (76)
160 PF05812 Herpes_BLRF2: Herpesv 66.2 11 0.00024 27.5 4.0 26 35-60 6-31 (118)
161 TIGR01834 PHA_synth_III_E poly 66.1 10 0.00022 31.7 4.2 30 18-47 289-318 (320)
162 KOG2391|consensus 65.8 20 0.00043 30.7 5.9 59 17-77 238-296 (365)
163 COG3879 Uncharacterized protei 65.8 21 0.00045 29.0 5.8 31 29-59 54-84 (247)
164 COG3416 Uncharacterized protei 65.7 39 0.00085 27.3 7.2 31 23-53 46-76 (233)
165 PF13863 DUF4200: Domain of un 65.6 40 0.00087 22.9 7.0 37 17-53 73-109 (126)
166 PF12325 TMF_TATA_bd: TATA ele 65.5 31 0.00067 24.8 6.1 25 33-57 69-93 (120)
167 PTZ00454 26S protease regulato 65.5 32 0.00069 28.9 7.1 37 22-58 26-62 (398)
168 COG5019 CDC3 Septin family pro 65.3 50 0.0011 28.4 8.2 57 4-60 314-370 (373)
169 PRK00846 hypothetical protein; 65.2 40 0.00086 22.8 7.4 33 27-59 29-61 (77)
170 PF06698 DUF1192: Protein of u 65.2 34 0.00074 22.0 5.8 27 20-46 23-49 (59)
171 TIGR02976 phageshock_pspB phag 65.1 16 0.00036 24.4 4.3 27 20-46 37-63 (75)
172 KOG3119|consensus 65.0 30 0.00065 27.7 6.5 48 13-60 196-243 (269)
173 PTZ00454 26S protease regulato 64.9 29 0.00063 29.1 6.7 38 17-54 28-65 (398)
174 cd00632 Prefoldin_beta Prefold 64.4 39 0.00085 22.8 6.2 37 20-56 65-101 (105)
175 PF05812 Herpes_BLRF2: Herpesv 64.0 13 0.00028 27.1 4.0 26 20-45 5-30 (118)
176 PF07558 Shugoshin_N: Shugoshi 63.8 9.9 0.00021 23.0 2.8 36 20-55 9-44 (46)
177 KOG3156|consensus 63.8 35 0.00076 27.4 6.6 61 15-75 89-159 (220)
178 PHA03162 hypothetical protein; 63.3 13 0.00027 27.9 3.8 26 36-61 17-42 (135)
179 PF05529 Bap31: B-cell recepto 63.0 20 0.00042 26.6 4.9 21 30-50 152-172 (192)
180 PF01608 I_LWEQ: I/LWEQ domain 63.0 22 0.00047 26.8 5.1 36 12-47 112-147 (152)
181 PF11461 RILP: Rab interacting 62.8 17 0.00037 23.6 3.9 31 26-56 4-34 (60)
182 PF05308 Mito_fiss_reg: Mitoch 62.7 12 0.00027 30.0 4.0 31 33-63 116-146 (253)
183 PRK14160 heat shock protein Gr 62.6 28 0.00061 27.4 5.9 26 27-52 56-81 (211)
184 PF14077 WD40_alt: Alternative 62.6 5.4 0.00012 25.1 1.5 20 35-54 14-33 (48)
185 PF08317 Spc7: Spc7 kinetochor 62.4 71 0.0015 25.8 8.4 43 16-58 228-270 (325)
186 PRK14127 cell division protein 62.4 19 0.00041 25.7 4.5 39 23-61 28-66 (109)
187 COG3883 Uncharacterized protei 62.1 31 0.00068 28.2 6.2 42 18-59 66-107 (265)
188 PRK11637 AmiB activator; Provi 61.7 64 0.0014 26.8 8.1 39 19-57 90-128 (428)
189 PHA03155 hypothetical protein; 61.4 13 0.00027 27.2 3.5 24 20-43 10-33 (115)
190 PF14389 Lzipper-MIP1: Leucine 61.1 23 0.0005 23.9 4.6 33 24-56 53-85 (88)
191 COG1322 Predicted nuclease of 60.9 60 0.0013 28.2 8.1 64 13-79 145-208 (448)
192 KOG3335|consensus 60.8 33 0.00072 26.8 5.9 38 11-48 99-136 (181)
193 PF10458 Val_tRNA-synt_C: Valy 60.7 25 0.00055 22.2 4.5 28 30-57 2-29 (66)
194 PF07989 Microtub_assoc: Micro 60.4 22 0.00048 23.5 4.3 28 22-49 4-31 (75)
195 TIGR01242 26Sp45 26S proteasom 60.3 33 0.00071 27.6 6.1 34 25-58 6-39 (364)
196 PLN02320 seryl-tRNA synthetase 59.9 31 0.00068 30.4 6.2 31 20-50 132-162 (502)
197 KOG4797|consensus 59.8 31 0.00066 25.4 5.2 34 8-41 64-97 (123)
198 PF11471 Sugarporin_N: Maltopo 59.8 22 0.00049 22.7 4.1 31 22-52 29-59 (60)
199 PF06632 XRCC4: DNA double-str 59.7 28 0.0006 29.2 5.7 22 24-45 143-164 (342)
200 PF11853 DUF3373: Protein of u 59.6 9.7 0.00021 33.6 3.1 23 26-48 32-54 (489)
201 PHA03162 hypothetical protein; 59.5 15 0.00033 27.5 3.7 26 16-41 11-36 (135)
202 PRK15396 murein lipoprotein; P 59.1 28 0.0006 23.6 4.6 32 26-57 26-57 (78)
203 PRK00295 hypothetical protein; 58.8 47 0.001 21.5 7.3 36 23-58 17-52 (68)
204 KOG3433|consensus 58.8 49 0.0011 26.3 6.5 41 12-52 103-143 (203)
205 COG5509 Uncharacterized small 58.8 21 0.00045 23.7 3.8 27 35-61 28-54 (65)
206 PF09789 DUF2353: Uncharacteri 58.6 29 0.00062 29.1 5.5 41 21-61 75-115 (319)
207 PF12017 Tnp_P_element: Transp 58.3 22 0.00048 28.3 4.7 26 30-55 16-41 (236)
208 PLN03188 kinesin-12 family pro 58.3 22 0.00048 35.0 5.4 35 23-57 1216-1254(1320)
209 PF09311 Rab5-bind: Rabaptin-l 58.3 6.1 0.00013 29.6 1.4 42 20-61 10-51 (181)
210 COG3937 Uncharacterized conser 58.2 54 0.0012 23.7 6.2 44 11-54 54-105 (108)
211 PF13815 Dzip-like_N: Iguana/D 58.1 29 0.00063 24.2 4.8 28 30-57 78-105 (118)
212 KOG1853|consensus 57.9 37 0.0008 28.5 6.0 43 15-57 42-84 (333)
213 PF11598 COMP: Cartilage oligo 57.9 42 0.0009 20.6 6.4 36 22-57 5-40 (45)
214 PRK15422 septal ring assembly 57.9 58 0.0013 22.3 6.0 36 22-57 36-71 (79)
215 PF14817 HAUS5: HAUS augmin-li 57.9 31 0.00068 31.2 6.0 39 12-50 73-111 (632)
216 PRK10722 hypothetical protein; 57.8 52 0.0011 26.8 6.8 50 7-58 160-209 (247)
217 PF08961 DUF1875: Domain of un 57.6 3.4 7.4E-05 33.5 0.0 31 21-51 132-162 (243)
218 PF11544 Spc42p: Spindle pole 57.0 26 0.00056 23.9 4.2 28 30-57 3-30 (76)
219 COG3132 Uncharacterized protei 57.0 17 0.00036 29.0 3.7 23 22-44 189-211 (215)
220 cd00890 Prefoldin Prefoldin is 56.6 58 0.0013 21.9 6.2 36 21-56 90-125 (129)
221 PF10224 DUF2205: Predicted co 56.6 60 0.0013 22.0 6.0 33 21-53 19-51 (80)
222 COG2433 Uncharacterized conser 56.5 39 0.00085 31.0 6.4 39 18-56 429-467 (652)
223 PF00038 Filament: Intermediat 56.5 94 0.002 24.2 8.5 35 24-58 109-143 (312)
224 PF01486 K-box: K-box region; 56.2 47 0.001 22.2 5.5 36 7-42 60-99 (100)
225 PF04508 Pox_A_type_inc: Viral 56.0 16 0.00035 19.7 2.5 20 33-52 2-21 (23)
226 PF08537 NBP1: Fungal Nap bind 55.9 1.3E+02 0.0027 25.5 8.9 38 20-57 184-221 (323)
227 cd00890 Prefoldin Prefoldin is 55.6 49 0.0011 22.3 5.5 34 18-51 94-127 (129)
228 KOG2483|consensus 55.6 60 0.0013 25.9 6.7 36 11-46 105-140 (232)
229 KOG0982|consensus 55.5 43 0.00094 29.7 6.3 35 9-44 289-323 (502)
230 TIGR03752 conj_TIGR03752 integ 55.4 37 0.00079 30.0 5.9 28 29-56 113-140 (472)
231 PF06305 DUF1049: Protein of u 55.3 18 0.00039 22.2 3.1 17 21-37 51-67 (68)
232 COG1792 MreC Cell shape-determ 55.3 49 0.0011 26.7 6.3 26 35-60 86-111 (284)
233 PF11577 NEMO: NF-kappa-B esse 55.1 42 0.00091 22.1 4.9 34 21-57 2-35 (68)
234 PHA00728 hypothetical protein 55.1 17 0.00037 27.3 3.4 21 25-45 5-25 (151)
235 PF05557 MAD: Mitotic checkpoi 54.9 35 0.00075 30.5 5.8 31 20-50 505-535 (722)
236 PF10376 Mei5: Double-strand r 54.7 56 0.0012 25.8 6.4 33 26-58 132-164 (221)
237 PF03962 Mnd1: Mnd1 family; I 54.6 46 0.001 25.3 5.7 21 37-57 108-128 (188)
238 PF10226 DUF2216: Uncharacteri 54.4 1.1E+02 0.0023 24.3 9.6 38 20-57 103-140 (195)
239 PF00261 Tropomyosin: Tropomyo 54.3 69 0.0015 24.7 6.7 39 19-57 184-222 (237)
240 PF15035 Rootletin: Ciliary ro 54.2 66 0.0014 24.5 6.5 36 23-58 86-121 (182)
241 PF10805 DUF2730: Protein of u 54.1 67 0.0015 22.2 6.1 34 24-57 48-83 (106)
242 COG4942 Membrane-bound metallo 53.9 93 0.002 27.1 8.0 53 8-60 49-101 (420)
243 PF02646 RmuC: RmuC family; I 53.8 1.2E+02 0.0025 24.5 9.1 49 28-79 34-85 (304)
244 PF12001 DUF3496: Domain of un 53.4 49 0.0011 23.8 5.4 36 22-57 4-40 (111)
245 PRK09973 putative outer membra 53.2 38 0.00083 23.4 4.6 32 26-57 25-56 (85)
246 PF07888 CALCOCO1: Calcium bin 53.1 48 0.001 29.8 6.3 31 25-55 150-180 (546)
247 PF02090 SPAM: Salmonella surf 53.1 47 0.001 25.2 5.4 52 24-77 22-73 (147)
248 PLN02678 seryl-tRNA synthetase 52.9 51 0.0011 28.5 6.3 28 22-49 75-102 (448)
249 KOG0614|consensus 52.8 33 0.00073 31.5 5.3 36 24-59 44-79 (732)
250 PRK10947 global DNA-binding tr 52.6 91 0.002 22.9 7.1 42 28-79 38-79 (135)
251 PF11221 Med21: Subunit 21 of 52.3 80 0.0017 22.8 6.4 37 21-57 100-140 (144)
252 COG3074 Uncharacterized protei 52.2 74 0.0016 21.8 6.1 39 17-55 31-69 (79)
253 PRK10803 tol-pal system protei 52.0 53 0.0012 26.0 5.9 22 36-57 58-79 (263)
254 TIGR01242 26Sp45 26S proteasom 52.0 53 0.0011 26.4 6.0 38 17-54 5-42 (364)
255 KOG0995|consensus 52.0 79 0.0017 28.7 7.5 42 17-58 286-327 (581)
256 PF10234 Cluap1: Clusterin-ass 51.9 1.1E+02 0.0025 24.9 7.9 45 13-57 171-215 (267)
257 PF11414 Suppressor_APC: Adeno 51.9 58 0.0013 22.2 5.3 37 23-59 5-41 (84)
258 PF04880 NUDE_C: NUDE protein, 51.5 9.8 0.00021 29.0 1.6 35 20-56 20-54 (166)
259 PF02344 Myc-LZ: Myc leucine z 51.5 47 0.001 19.3 4.1 24 29-52 5-28 (32)
260 PRK03992 proteasome-activating 51.4 66 0.0014 26.6 6.6 35 23-57 13-47 (389)
261 PF08826 DMPK_coil: DMPK coile 51.4 64 0.0014 20.8 6.2 32 14-45 28-59 (61)
262 PF07106 TBPIP: Tat binding pr 51.3 34 0.00073 24.9 4.4 9 29-37 120-128 (169)
263 CHL00154 rpl29 ribosomal prote 51.2 66 0.0014 20.9 6.9 46 14-59 8-64 (67)
264 PF12711 Kinesin-relat_1: Kine 51.0 24 0.00051 24.4 3.3 28 28-55 27-67 (86)
265 PF08912 Rho_Binding: Rho Bind 50.7 67 0.0015 21.4 5.3 32 24-55 2-33 (69)
266 PF13600 DUF4140: N-terminal d 50.7 57 0.0012 21.6 5.2 33 23-55 68-100 (104)
267 PF04999 FtsL: Cell division p 50.3 67 0.0014 21.2 5.4 29 25-53 42-70 (97)
268 PF07047 OPA3: Optic atrophy 3 50.3 36 0.00079 24.4 4.4 23 29-51 109-131 (134)
269 PF15372 DUF4600: Domain of un 50.2 33 0.00072 25.4 4.2 57 21-77 4-61 (129)
270 PRK05431 seryl-tRNA synthetase 50.1 65 0.0014 27.3 6.4 26 30-55 71-96 (425)
271 KOG1962|consensus 50.1 43 0.00093 26.7 5.1 23 30-52 149-171 (216)
272 PF09602 PhaP_Bmeg: Polyhydrox 49.6 1E+02 0.0022 23.7 6.9 45 10-57 22-66 (165)
273 PF08941 USP8_interact: USP8 i 49.4 5.6 0.00012 31.0 0.0 42 20-61 6-47 (179)
274 cd07429 Cby_like Chibby, a nuc 48.9 65 0.0014 23.1 5.4 34 25-58 72-105 (108)
275 KOG1055|consensus 48.7 25 0.00054 33.2 4.0 43 19-61 753-795 (865)
276 PF15556 Zwint: ZW10 interacto 48.7 1.5E+02 0.0032 24.2 8.1 29 4-32 113-141 (252)
277 PF09726 Macoilin: Transmembra 48.6 54 0.0012 29.9 6.1 24 25-48 552-575 (697)
278 PF04156 IncA: IncA protein; 48.2 84 0.0018 22.8 6.1 41 19-59 82-122 (191)
279 PF06810 Phage_GP20: Phage min 48.2 1.1E+02 0.0024 22.6 7.0 37 13-49 29-68 (155)
280 PF11365 DUF3166: Protein of u 48.0 95 0.0021 21.8 6.3 40 20-59 3-42 (96)
281 PF14662 CCDC155: Coiled-coil 47.5 57 0.0012 25.7 5.3 16 24-39 101-116 (193)
282 PF04728 LPP: Lipoprotein leuc 47.5 74 0.0016 20.4 5.9 32 22-53 14-45 (56)
283 PF02996 Prefoldin: Prefoldin 47.4 68 0.0015 21.5 5.2 34 23-56 82-115 (120)
284 smart00307 ILWEQ I/LWEQ domain 47.3 49 0.0011 25.9 4.9 30 17-46 165-194 (200)
285 PF10211 Ax_dynein_light: Axon 47.2 93 0.002 23.6 6.4 31 27-57 122-152 (189)
286 COG1730 GIM5 Predicted prefold 47.1 63 0.0014 24.1 5.3 38 23-60 4-41 (145)
287 PF01763 Herpes_UL6: Herpesvir 47.1 52 0.0011 29.5 5.6 35 20-54 372-406 (557)
288 KOG0971|consensus 47.0 93 0.002 30.4 7.4 36 23-58 323-358 (1243)
289 PRK01203 prefoldin subunit alp 47.0 54 0.0012 24.1 4.9 33 28-60 3-35 (130)
290 COG1382 GimC Prefoldin, chaper 46.9 76 0.0017 23.1 5.6 33 17-49 76-108 (119)
291 PF06667 PspB: Phage shock pro 46.9 55 0.0012 21.9 4.5 27 20-46 37-63 (75)
292 COG5509 Uncharacterized small 46.6 44 0.00095 22.2 3.9 25 26-50 26-50 (65)
293 PF10805 DUF2730: Protein of u 46.6 95 0.0021 21.4 6.8 44 16-59 33-78 (106)
294 PF04880 NUDE_C: NUDE protein, 46.6 36 0.00079 25.9 4.0 24 32-55 24-47 (166)
295 PRK09039 hypothetical protein; 46.5 62 0.0013 26.7 5.7 23 26-48 138-160 (343)
296 PF04111 APG6: Autophagy prote 46.4 89 0.0019 25.5 6.5 39 19-57 44-82 (314)
297 PRK13729 conjugal transfer pil 46.1 74 0.0016 28.2 6.3 37 20-56 71-107 (475)
298 PRK03992 proteasome-activating 46.1 1.2E+02 0.0026 25.1 7.3 37 17-53 14-50 (389)
299 PF07439 DUF1515: Protein of u 46.0 59 0.0013 23.7 4.8 42 6-47 28-69 (112)
300 PF06008 Laminin_I: Laminin Do 45.9 1.4E+02 0.003 23.2 7.6 59 12-79 74-132 (264)
301 KOG1962|consensus 45.9 59 0.0013 25.9 5.3 15 34-48 181-195 (216)
302 PF09730 BicD: Microtubule-ass 45.7 33 0.00071 31.6 4.3 30 16-45 88-117 (717)
303 PRK13902 alaS alanyl-tRNA synt 45.3 82 0.0018 29.6 6.8 35 18-52 754-788 (900)
304 PF11853 DUF3373: Protein of u 45.3 19 0.00041 31.8 2.6 25 33-57 32-56 (489)
305 PF04871 Uso1_p115_C: Uso1 / p 45.2 1.2E+02 0.0025 22.0 7.6 37 20-56 57-94 (136)
306 TIGR00293 prefoldin, archaeal 45.0 99 0.0021 21.1 5.8 35 22-56 3-37 (126)
307 PF07888 CALCOCO1: Calcium bin 45.0 1.3E+02 0.0029 27.0 7.8 20 22-41 217-236 (546)
308 TIGR01837 PHA_granule_1 poly(h 45.0 1.1E+02 0.0023 21.6 7.1 21 32-52 96-116 (118)
309 PRK10328 DNA binding protein, 44.9 1.2E+02 0.0027 22.2 6.9 41 29-79 39-79 (134)
310 PF10359 Fmp27_WPPW: RNA pol I 44.8 1.6E+02 0.0034 25.3 8.0 14 42-55 210-223 (475)
311 PF00769 ERM: Ezrin/radixin/mo 44.6 98 0.0021 24.4 6.3 33 23-55 80-112 (246)
312 PF04568 IATP: Mitochondrial A 44.6 1.1E+02 0.0024 21.5 7.1 43 13-55 57-99 (100)
313 PF13942 Lipoprotein_20: YfhG 44.5 1.4E+02 0.003 23.4 6.9 49 7-57 114-162 (179)
314 PF06785 UPF0242: Uncharacteri 44.5 45 0.00098 28.8 4.6 34 15-48 124-157 (401)
315 PF09340 NuA4: Histone acetylt 44.3 94 0.002 20.7 8.0 29 18-46 2-30 (80)
316 KOG0977|consensus 43.8 69 0.0015 28.8 5.9 27 21-47 165-191 (546)
317 COG4467 Regulator of replicati 43.5 78 0.0017 23.1 5.1 37 21-57 11-54 (114)
318 PF00038 Filament: Intermediat 43.3 1.4E+02 0.0031 23.2 7.1 40 18-57 54-93 (312)
319 KOG0483|consensus 43.3 40 0.00087 26.3 3.9 44 10-53 101-147 (198)
320 KOG3433|consensus 43.2 86 0.0019 24.9 5.7 39 7-45 105-143 (203)
321 PF00816 Histone_HNS: H-NS his 42.8 45 0.00097 22.0 3.6 14 45-58 23-36 (93)
322 KOG3215|consensus 42.4 1.6E+02 0.0035 23.8 7.2 46 18-63 96-147 (222)
323 PF02388 FemAB: FemAB family; 42.3 1.2E+02 0.0027 25.2 6.9 27 34-60 275-301 (406)
324 PF15397 DUF4618: Domain of un 42.2 1.5E+02 0.0033 24.2 7.2 25 28-52 203-227 (258)
325 PF05597 Phasin: Poly(hydroxya 42.0 39 0.00084 24.7 3.5 21 32-52 109-129 (132)
326 PF14915 CCDC144C: CCDC144C pr 42.0 1.1E+02 0.0025 25.6 6.5 35 18-52 214-248 (305)
327 TIGR03689 pup_AAA proteasome A 42.0 84 0.0018 27.7 6.1 38 21-58 4-41 (512)
328 PRK03947 prefoldin subunit alp 41.9 81 0.0018 22.1 5.0 34 26-59 7-40 (140)
329 KOG0982|consensus 41.9 97 0.0021 27.6 6.4 34 24-59 291-324 (502)
330 PRK14872 rod shape-determining 41.7 80 0.0017 26.6 5.7 39 19-57 58-99 (337)
331 TIGR02338 gimC_beta prefoldin, 41.6 1.1E+02 0.0025 20.8 6.1 35 21-55 70-104 (110)
332 PF12325 TMF_TATA_bd: TATA ele 41.4 1.3E+02 0.0028 21.6 6.0 32 23-54 35-66 (120)
333 PF11559 ADIP: Afadin- and alp 41.4 1.3E+02 0.0028 21.4 7.0 38 22-59 91-128 (151)
334 KOG4673|consensus 41.4 1.5E+02 0.0033 28.2 7.7 53 6-58 713-765 (961)
335 TIGR00293 prefoldin, archaeal 41.3 1.1E+02 0.0024 20.9 5.6 33 23-55 91-123 (126)
336 PF14916 CCDC92: Coiled-coil d 41.3 71 0.0015 20.7 4.2 34 19-52 4-41 (60)
337 PF08657 DASH_Spc34: DASH comp 41.3 1.8E+02 0.0038 23.5 7.4 34 18-51 180-213 (259)
338 PF15070 GOLGA2L5: Putative go 41.0 1.6E+02 0.0035 26.6 7.8 54 4-57 13-68 (617)
339 PF07439 DUF1515: Protein of u 40.8 1.4E+02 0.003 21.8 6.1 48 7-54 22-69 (112)
340 PF05700 BCAS2: Breast carcino 40.8 1.7E+02 0.0036 22.5 7.6 38 20-57 177-214 (221)
341 PF05769 DUF837: Protein of un 40.7 1.2E+02 0.0027 23.0 6.2 34 23-56 143-177 (181)
342 PF05600 DUF773: Protein of un 40.3 1.6E+02 0.0035 25.8 7.5 44 14-57 449-492 (507)
343 KOG4673|consensus 40.2 63 0.0014 30.6 5.2 46 5-50 396-441 (961)
344 PF04783 DUF630: Protein of un 40.2 39 0.00084 21.9 2.9 46 5-54 10-55 (60)
345 PRK05771 V-type ATP synthase s 40.2 96 0.0021 27.3 6.2 32 26-57 94-125 (646)
346 PF11336 DUF3138: Protein of u 39.9 52 0.0011 29.3 4.5 30 32-61 25-54 (514)
347 PF15254 CCDC14: Coiled-coil d 39.9 1.3E+02 0.0029 28.5 7.2 36 25-60 448-483 (861)
348 cd00632 Prefoldin_beta Prefold 39.8 1.2E+02 0.0025 20.5 5.6 32 20-51 72-103 (105)
349 cd01109 HTH_YyaN Helix-Turn-He 39.7 1.2E+02 0.0026 20.5 5.7 32 25-56 79-110 (113)
350 PF09755 DUF2046: Uncharacteri 39.6 97 0.0021 26.0 5.8 31 21-51 23-53 (310)
351 COG3937 Uncharacterized conser 39.6 43 0.00094 24.2 3.3 24 26-49 84-107 (108)
352 COG3599 DivIVA Cell division i 39.6 85 0.0019 24.7 5.2 33 22-54 34-66 (212)
353 PF14712 Snapin_Pallidin: Snap 39.4 1.1E+02 0.0023 19.9 5.5 35 21-55 17-51 (92)
354 KOG4809|consensus 39.4 41 0.00089 30.7 3.8 34 16-49 322-355 (654)
355 PF07334 IFP_35_N: Interferon- 39.4 54 0.0012 22.2 3.6 32 21-52 3-34 (76)
356 PF14257 DUF4349: Domain of un 39.4 1.6E+02 0.0036 22.6 6.8 30 27-56 164-193 (262)
357 PRK01156 chromosome segregatio 39.3 1.7E+02 0.0036 26.5 7.6 34 21-54 412-445 (895)
358 cd00584 Prefoldin_alpha Prefol 39.2 1.2E+02 0.0027 20.7 5.6 33 23-55 92-124 (129)
359 PF08781 DP: Transcription fac 39.2 1.2E+02 0.0025 22.7 5.7 26 26-51 2-27 (142)
360 PF09766 FimP: Fms-interacting 39.2 1.3E+02 0.0028 24.9 6.5 42 14-55 104-145 (355)
361 PF00631 G-gamma: GGL domain; 39.1 27 0.0006 22.1 2.1 17 34-50 4-20 (68)
362 PF12128 DUF3584: Protein of u 38.9 3.1E+02 0.0067 26.3 9.6 49 10-58 833-881 (1201)
363 PF07798 DUF1640: Protein of u 38.8 1E+02 0.0022 22.8 5.3 19 28-46 76-94 (177)
364 PF09744 Jnk-SapK_ap_N: JNK_SA 38.6 69 0.0015 24.0 4.4 33 17-49 88-120 (158)
365 KOG3436|consensus 38.4 63 0.0014 23.9 4.1 29 11-39 5-33 (123)
366 COG2900 SlyX Uncharacterized p 38.4 1.2E+02 0.0027 20.4 7.4 40 18-57 8-47 (72)
367 KOG3684|consensus 38.4 1.2E+02 0.0027 27.0 6.5 38 22-59 431-468 (489)
368 PF03234 CDC37_N: Cdc37 N term 38.4 1.8E+02 0.0039 22.3 8.6 60 17-79 31-90 (177)
369 KOG4593|consensus 38.3 3.3E+02 0.0071 25.5 9.3 57 6-62 488-582 (716)
370 PF09789 DUF2353: Uncharacteri 38.1 79 0.0017 26.5 5.1 32 27-58 191-222 (319)
371 PF02996 Prefoldin: Prefoldin 38.1 1.1E+02 0.0024 20.5 5.0 33 19-51 85-117 (120)
372 KOG4643|consensus 38.1 63 0.0014 31.6 4.9 32 23-54 262-293 (1195)
373 TIGR00414 serS seryl-tRNA synt 38.0 91 0.002 26.3 5.5 28 22-49 73-100 (418)
374 PF08606 Prp19: Prp19/Pso4-lik 37.9 1E+02 0.0022 20.7 4.7 28 23-50 13-40 (70)
375 PF05266 DUF724: Protein of un 37.9 1.8E+02 0.004 22.2 6.9 32 22-53 114-145 (190)
376 PF13870 DUF4201: Domain of un 37.9 89 0.0019 22.8 4.9 34 24-57 41-74 (177)
377 PRK14011 prefoldin subunit alp 37.8 1.2E+02 0.0025 22.4 5.5 35 27-61 5-39 (144)
378 PF03285 Paralemmin: Paralemmi 37.5 39 0.00085 27.8 3.2 28 20-47 5-32 (278)
379 COG3132 Uncharacterized protei 37.4 51 0.0011 26.3 3.7 24 36-59 189-212 (215)
380 PRK09866 hypothetical protein; 37.3 1.5E+02 0.0033 27.7 7.1 49 7-55 421-469 (741)
381 TIGR01834 PHA_synth_III_E poly 37.2 61 0.0013 27.2 4.3 25 32-56 289-313 (320)
382 smart00787 Spc7 Spc7 kinetocho 36.8 2.4E+02 0.0052 23.2 8.4 41 17-57 224-264 (312)
383 TIGR02338 gimC_beta prefoldin, 36.8 1.4E+02 0.003 20.4 5.6 31 19-49 75-105 (110)
384 PRK09343 prefoldin subunit bet 36.7 1.5E+02 0.0033 20.8 6.1 31 22-52 75-105 (121)
385 PF08657 DASH_Spc34: DASH comp 36.6 1.2E+02 0.0026 24.5 5.7 41 22-62 177-217 (259)
386 TIGR03683 A-tRNA_syn_arch alan 36.5 1.3E+02 0.0029 28.2 6.8 34 19-52 759-792 (902)
387 PF11365 DUF3166: Protein of u 36.2 98 0.0021 21.7 4.6 28 21-55 18-45 (96)
388 PF07028 DUF1319: Protein of u 36.1 1.8E+02 0.0039 21.5 9.3 44 28-77 56-99 (126)
389 TIGR03185 DNA_S_dndD DNA sulfu 36.1 2.4E+02 0.0052 24.9 8.0 38 20-57 218-255 (650)
390 PF00261 Tropomyosin: Tropomyo 36.0 1.7E+02 0.0036 22.5 6.4 43 16-58 174-216 (237)
391 PF12017 Tnp_P_element: Transp 35.8 1.3E+02 0.0029 23.8 5.9 37 19-55 19-55 (236)
392 cd01282 HTH_MerR-like_sg3 Heli 35.8 1.3E+02 0.0028 20.5 5.1 31 25-55 81-111 (112)
393 KOG0250|consensus 35.7 1.1E+02 0.0023 29.9 6.0 36 22-57 398-433 (1074)
394 PF09738 DUF2051: Double stran 35.7 96 0.0021 25.6 5.2 33 23-55 217-249 (302)
395 cd01106 HTH_TipAL-Mta Helix-Tu 35.7 1.1E+02 0.0024 20.3 4.7 31 24-54 72-102 (103)
396 PF04380 BMFP: Membrane fusoge 35.5 93 0.002 20.5 4.2 21 31-51 56-76 (79)
397 PF12097 DUF3573: Protein of u 35.4 50 0.0011 28.5 3.6 26 29-54 39-64 (383)
398 KOG3436|consensus 35.2 70 0.0015 23.7 3.9 25 33-57 13-37 (123)
399 PF06216 RTBV_P46: Rice tungro 35.1 1.4E+02 0.0029 25.4 6.0 27 31-57 77-103 (389)
400 PF05565 Sipho_Gp157: Siphovir 35.1 1.6E+02 0.0035 21.6 5.9 39 21-59 50-88 (162)
401 PF07061 Swi5: Swi5; InterPro 35.0 92 0.002 21.0 4.2 25 23-47 5-29 (83)
402 PF08286 Spc24: Spc24 subunit 34.9 13 0.00028 26.0 0.0 27 29-55 10-36 (118)
403 TIGR02231 conserved hypothetic 34.9 1.2E+02 0.0026 25.9 5.8 39 18-56 71-109 (525)
404 KOG4360|consensus 34.9 36 0.00079 30.8 2.8 31 18-48 159-189 (596)
405 KOG4253|consensus 34.7 1.2E+02 0.0026 23.7 5.2 16 35-50 73-88 (175)
406 PF10482 CtIP_N: Tumour-suppre 34.5 76 0.0016 23.4 4.0 36 11-48 30-65 (120)
407 cd04775 HTH_Cfa-like Helix-Tur 34.5 1.1E+02 0.0024 20.5 4.6 28 28-55 74-101 (102)
408 cd00584 Prefoldin_alpha Prefol 34.5 1.5E+02 0.0033 20.3 5.9 31 19-49 95-125 (129)
409 cd04776 HTH_GnyR Helix-Turn-He 34.4 1.6E+02 0.0034 20.4 6.2 34 24-57 79-112 (118)
410 KOG0709|consensus 34.2 49 0.0011 29.3 3.4 36 18-53 286-321 (472)
411 PF05700 BCAS2: Breast carcino 34.1 1.1E+02 0.0024 23.5 5.1 31 22-52 186-216 (221)
412 PF09726 Macoilin: Transmembra 34.0 1.2E+02 0.0026 27.8 5.9 42 14-55 435-476 (697)
413 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.0 1.7E+02 0.0036 20.6 7.8 31 25-55 98-128 (132)
414 KOG4687|consensus 34.0 3E+02 0.0064 23.6 7.8 61 17-77 29-93 (389)
415 PF04340 DUF484: Protein of un 33.9 67 0.0014 24.4 3.8 19 26-44 48-66 (225)
416 PF07820 TraC: TraC-like prote 33.9 1.7E+02 0.0037 20.6 6.7 50 28-79 5-55 (92)
417 PRK06798 fliD flagellar cappin 33.9 1.7E+02 0.0038 25.0 6.6 42 17-58 396-437 (440)
418 PF01920 Prefoldin_2: Prefoldi 33.7 1.3E+02 0.0029 19.4 6.3 39 21-59 1-39 (106)
419 PRK00461 rpmC 50S ribosomal pr 33.6 1.6E+02 0.0034 20.2 6.9 48 14-61 4-62 (87)
420 KOG3684|consensus 33.6 79 0.0017 28.2 4.6 43 19-61 435-477 (489)
421 KOG0239|consensus 33.5 1.9E+02 0.0041 26.4 7.1 47 5-51 228-274 (670)
422 PRK10265 chaperone-modulator p 33.3 73 0.0016 21.7 3.6 24 37-60 76-99 (101)
423 PF14362 DUF4407: Domain of un 32.6 2.5E+02 0.0053 22.1 8.7 43 19-61 129-171 (301)
424 PF09849 DUF2076: Uncharacteri 32.6 2.6E+02 0.0057 22.4 7.1 28 23-50 46-73 (247)
425 PRK10636 putative ABC transpor 32.6 1.3E+02 0.0029 26.4 5.8 29 28-56 559-587 (638)
426 TIGR02977 phageshock_pspA phag 32.5 2.2E+02 0.0047 21.7 6.4 29 25-53 99-127 (219)
427 PF10168 Nup88: Nuclear pore c 32.5 2.5E+02 0.0053 25.8 7.6 46 7-52 543-592 (717)
428 PF14584 DUF4446: Protein of u 32.4 2.1E+02 0.0045 21.2 7.7 36 22-57 43-78 (151)
429 PF10212 TTKRSYEDQ: Predicted 32.4 1.6E+02 0.0034 26.5 6.3 53 9-61 300-356 (518)
430 PF05266 DUF724: Protein of un 32.4 2.3E+02 0.005 21.7 7.0 11 22-32 135-145 (190)
431 KOG3650|consensus 32.4 97 0.0021 22.6 4.2 26 27-52 65-90 (120)
432 PF02994 Transposase_22: L1 tr 32.2 1.9E+02 0.0042 24.1 6.5 40 18-57 144-183 (370)
433 PF14854 LURAP: Leucine rich a 32.0 57 0.0012 24.0 3.0 17 37-53 20-36 (121)
434 PF14389 Lzipper-MIP1: Leucine 32.0 1.5E+02 0.0033 19.9 4.9 28 20-47 56-83 (88)
435 PHA02047 phage lambda Rz1-like 31.9 1.5E+02 0.0032 21.3 5.0 36 19-54 28-63 (101)
436 PRK09343 prefoldin subunit bet 31.9 1.8E+02 0.004 20.4 5.6 38 19-59 79-116 (121)
437 PF08537 NBP1: Fungal Nap bind 31.8 1.1E+02 0.0024 25.8 5.0 31 25-55 175-205 (323)
438 PF08317 Spc7: Spc7 kinetochor 31.7 2.8E+02 0.006 22.4 8.1 35 23-57 228-262 (325)
439 KOG1333|consensus 31.7 50 0.0011 26.8 2.9 38 22-59 180-217 (241)
440 TIGR01062 parC_Gneg DNA topois 31.6 1.3E+02 0.0027 27.9 5.7 40 18-57 409-449 (735)
441 PF07544 Med9: RNA polymerase 31.6 1.2E+02 0.0026 20.0 4.3 20 38-57 58-77 (83)
442 PF07246 Phlebovirus_NSM: Phle 31.6 1.9E+02 0.0042 23.8 6.3 8 73-80 247-254 (264)
443 PRK10698 phage shock protein P 31.5 2.3E+02 0.0049 22.0 6.4 34 23-56 97-130 (222)
444 TIGR00344 alaS alanine--tRNA l 31.3 1.9E+02 0.0041 27.1 6.8 34 19-52 720-753 (851)
445 PF07061 Swi5: Swi5; InterPro 31.2 1.5E+02 0.0031 20.0 4.7 25 29-53 4-28 (83)
446 PF06295 DUF1043: Protein of u 31.2 1E+02 0.0022 21.9 4.1 42 20-61 27-76 (128)
447 PHA02562 46 endonuclease subun 31.1 3.1E+02 0.0067 23.0 7.6 29 21-49 361-389 (562)
448 PF10146 zf-C4H2: Zinc finger- 31.1 2.7E+02 0.0058 22.1 8.9 39 23-61 65-103 (230)
449 PF15456 Uds1: Up-regulated Du 31.0 1.6E+02 0.0034 21.2 5.2 33 24-56 21-53 (124)
450 PF14662 CCDC155: Coiled-coil 31.0 1.9E+02 0.004 22.8 5.8 38 20-57 24-61 (193)
451 PRK14549 50S ribosomal protein 31.0 1.5E+02 0.0033 19.1 6.8 44 15-58 9-64 (69)
452 KOG0971|consensus 31.0 4.8E+02 0.01 25.8 9.4 51 7-57 1001-1051(1243)
453 KOG4370|consensus 31.0 1.5E+02 0.0033 26.5 5.9 36 24-59 419-454 (514)
454 PRK05771 V-type ATP synthase s 31.0 1.8E+02 0.004 25.6 6.4 37 18-54 93-129 (646)
455 PRK11546 zraP zinc resistance 31.0 2.3E+02 0.0049 21.2 8.1 51 8-58 51-108 (143)
456 PF05557 MAD: Mitotic checkpoi 31.0 1.3E+02 0.0029 26.8 5.7 35 23-57 501-535 (722)
457 PRK05431 seryl-tRNA synthetase 30.9 3.1E+02 0.0067 23.2 7.6 30 21-50 69-98 (425)
458 TIGR01730 RND_mfp RND family e 30.8 1.9E+02 0.004 21.9 5.8 21 35-55 74-94 (322)
459 TIGR02791 VirB5 P-type DNA tra 30.8 2.5E+02 0.0053 21.5 6.6 34 28-61 37-70 (220)
460 PRK09039 hypothetical protein; 30.7 2E+02 0.0042 23.8 6.2 25 34-58 139-163 (343)
461 PF14282 FlxA: FlxA-like prote 30.7 1.6E+02 0.0035 20.2 5.0 17 37-53 56-72 (106)
462 COG0172 SerS Seryl-tRNA synthe 30.6 1.3E+02 0.0029 26.1 5.4 20 15-34 40-59 (429)
463 PF03955 Adeno_PIX: Adenovirus 30.6 91 0.002 22.5 3.8 26 26-51 84-109 (109)
464 COG4345 Uncharacterized protei 30.6 2E+02 0.0043 22.6 5.8 38 21-58 121-158 (181)
465 KOG4807|consensus 30.2 3.8E+02 0.0082 24.1 8.1 54 21-77 459-515 (593)
466 PF14182 YgaB: YgaB-like prote 30.2 1.8E+02 0.004 19.9 6.2 29 31-59 39-67 (79)
467 PF09738 DUF2051: Double stran 30.0 2.3E+02 0.005 23.4 6.5 32 27-58 142-173 (302)
468 PRK04863 mukB cell division pr 29.9 4.4E+02 0.0096 26.5 9.3 56 23-78 388-446 (1486)
469 PRK00306 50S ribosomal protein 29.8 1.5E+02 0.0033 18.7 6.8 45 15-59 6-61 (66)
470 KOG1319|consensus 29.7 2.3E+02 0.0049 22.8 6.2 28 28-55 115-142 (229)
471 PF06210 DUF1003: Protein of u 29.7 2E+02 0.0044 20.2 6.7 32 18-49 66-97 (108)
472 cd04766 HTH_HspR Helix-Turn-He 29.6 1.1E+02 0.0025 19.9 3.9 19 37-55 70-88 (91)
473 KOG4378|consensus 29.6 74 0.0016 29.1 3.8 22 32-53 650-671 (673)
474 cd04769 HTH_MerR2 Helix-Turn-H 29.4 1.9E+02 0.004 19.7 6.0 34 25-58 79-112 (116)
475 PF13935 Ead_Ea22: Ead/Ea22-li 29.4 2.2E+02 0.0047 20.4 5.7 33 23-55 79-113 (139)
476 KOG4643|consensus 29.4 4.1E+02 0.0089 26.3 8.7 26 32-57 198-223 (1195)
477 PRK14160 heat shock protein Gr 29.3 2.1E+02 0.0045 22.5 5.9 7 91-97 166-172 (211)
478 PHA02562 46 endonuclease subun 29.2 2.8E+02 0.0061 23.2 7.0 30 28-57 216-245 (562)
479 PF13591 MerR_2: MerR HTH fami 28.9 50 0.0011 21.7 2.1 17 36-52 67-83 (84)
480 PRK03947 prefoldin subunit alp 28.9 2.1E+02 0.0044 20.0 6.5 42 17-58 5-46 (140)
481 PF14265 DUF4355: Domain of un 28.6 2E+02 0.0043 19.7 6.0 17 26-42 50-66 (125)
482 PF10473 CENP-F_leu_zip: Leuci 28.6 2.4E+02 0.0053 20.8 7.3 42 15-56 49-90 (140)
483 KOG2008|consensus 28.5 2.2E+02 0.0048 24.7 6.3 45 2-47 168-212 (426)
484 PF12999 PRKCSH-like: Glucosid 28.5 1.8E+02 0.0039 22.4 5.3 19 33-51 154-172 (176)
485 COG4942 Membrane-bound metallo 28.4 3.8E+02 0.0083 23.4 7.8 46 16-61 43-88 (420)
486 cd01878 HflX HflX subfamily. 28.4 1.1E+02 0.0025 21.7 4.1 24 30-53 4-27 (204)
487 PF09755 DUF2046: Uncharacteri 28.3 2.3E+02 0.0049 23.9 6.2 43 14-56 23-65 (310)
488 KOG0946|consensus 28.3 1.7E+02 0.0036 28.2 5.9 36 21-56 674-709 (970)
489 PF05769 DUF837: Protein of un 28.1 2.7E+02 0.0058 21.2 6.2 24 27-50 72-95 (181)
490 PF13805 Pil1: Eisosome compon 28.1 3.4E+02 0.0074 22.3 7.5 29 19-47 166-194 (271)
491 PF11285 DUF3086: Protein of u 28.1 1.3E+02 0.0029 25.0 4.8 29 21-49 7-35 (283)
492 PF12999 PRKCSH-like: Glucosid 28.0 2.8E+02 0.0062 21.4 7.3 16 41-56 155-170 (176)
493 KOG0979|consensus 27.9 4.7E+02 0.01 25.7 8.8 42 17-58 310-351 (1072)
494 cd04787 HTH_HMRTR_unk Helix-Tu 27.8 2.2E+02 0.0047 19.9 6.5 32 27-58 81-112 (133)
495 KOG3478|consensus 27.6 2.5E+02 0.0055 20.6 5.8 44 23-66 74-117 (120)
496 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.5 2.2E+02 0.0048 20.0 6.2 44 18-61 52-95 (132)
497 PF10498 IFT57: Intra-flagella 27.4 2.9E+02 0.0063 23.2 6.8 56 15-70 277-333 (359)
498 KOG0946|consensus 27.4 1.9E+02 0.0042 27.8 6.2 39 17-55 677-715 (970)
499 PF05837 CENP-H: Centromere pr 27.3 2.1E+02 0.0046 19.7 5.8 36 18-53 10-45 (106)
500 KOG4119|consensus 27.2 1.1E+02 0.0024 20.5 3.5 25 33-57 8-32 (71)
No 1
>KOG3119|consensus
Probab=99.63 E-value=8.8e-16 Score=121.57 Aligned_cols=61 Identities=33% Similarity=0.468 Sum_probs=58.6
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGST 62 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~ 62 (105)
|+|||+||||||+|+|+++++++.||.+|++||+.|+.+|++|++|+..|+++|.++....
T Consensus 199 r~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~ 259 (269)
T KOG3119|consen 199 RRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPG 259 (269)
T ss_pred HHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 7899999999999999999999999999999999999999999999999999999987663
No 2
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.34 E-value=4e-12 Score=79.02 Aligned_cols=46 Identities=33% Similarity=0.485 Sum_probs=44.3
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
|.|||+||+|||+++|+...+++.++..|+.+|..|+.+|..|+.|
T Consensus 9 R~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 9 RERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999999999999999999999999999886
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.33 E-value=7e-12 Score=79.83 Aligned_cols=55 Identities=33% Similarity=0.446 Sum_probs=53.0
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+.||++||++||+++++...+++.++..|+.+|..|+.+|..|+.|+..|+..+.
T Consensus 10 ~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 10 RERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999999999875
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.15 E-value=3e-10 Score=72.23 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=51.3
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+.||.+||++||+++++...+++.+|..|+.+|..|+.++..|..++..|+.-.
T Consensus 10 r~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 10 RERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999999999999999999999999999999999998643
No 5
>KOG4571|consensus
Probab=98.61 E-value=1.5e-07 Score=76.79 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=55.2
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
|..|++||-|-|+|+|..-+++......|+.+|.+|+.++..|.+|+.+||++|++.-
T Consensus 232 r~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 232 RQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999999999854
No 6
>KOG0837|consensus
Probab=98.05 E-value=1.9e-05 Score=64.25 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=60.6
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGI 65 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~ 65 (105)
|-||.+||.|||.++=++...++.+|..|..+|..|-..+..|++.+..+|+-++.|.+++++.
T Consensus 211 rlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~~ 274 (279)
T KOG0837|consen 211 RLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQL 274 (279)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4689999999999999999999999999999999999999999999999999999999887644
No 7
>KOG3584|consensus
Probab=97.66 E-value=7.4e-05 Score=61.98 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=40.8
Q ss_pred chhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 3 EPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 3 eRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
-||++|||-||.|+|+-...++-||.-||..|..|-+ ||..||+|+-.
T Consensus 297 mKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIE-------ELKtLKeLYc~ 344 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEYVKCLENRVAVLENQNKALIE-------ELKTLKELYCH 344 (348)
T ss_pred HhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHH-------HHHHHHHHhhc
Confidence 3899999999999999999999999999999987755 45567777654
No 8
>KOG4005|consensus
Probab=97.62 E-value=0.0002 Score=58.26 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=38.6
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
||++||+-+||++|.|..+++..+.+|++||..|+.+-+.|+.
T Consensus 76 KNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 76 KNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999988877666543
No 9
>KOG4343|consensus
Probab=96.96 E-value=0.0024 Score=56.76 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=43.3
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
||++.|--||.|+|+-..-++.|...|.+||+.|+++=..|+..|..|
T Consensus 288 KNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 288 KNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 799999999999999999999999999999998888888888777765
No 10
>KOG4196|consensus
Probab=96.70 E-value=0.022 Score=42.37 Aligned_cols=58 Identities=24% Similarity=0.220 Sum_probs=45.8
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
||.-=|.-||.|+=+.-.+++..-.+|.+|.+.|+.++..+..|++.||.-+.+-..+
T Consensus 60 KNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 60 KNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777788899999888888887788888888888888888888888888877765544
No 11
>KOG1414|consensus
Probab=96.29 E-value=0.00058 Score=56.87 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=53.5
Q ss_pred CcchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy12101 1 MAEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLE-EKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 1 ~reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr-~~I~~L~kEl~~LK~ll~~h~ 59 (105)
|.+||.+|+-|||.++|.|...++.++..+..+|..|. .+++.|..++..+...+..+.
T Consensus 289 ~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~~~~~~~ 348 (395)
T KOG1414|consen 289 FLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQALLTHK 348 (395)
T ss_pred hhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcccccccc
Confidence 57999999999999999999999999999999999999 888999999988876555544
No 12
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=96.17 E-value=2.5e-05 Score=53.05 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=34.1
Q ss_pred chhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 3 EPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 3 eRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
-+|..||+.||.++.....+++..+..|..+...|..++..+..|++.|
T Consensus 36 ~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~l 84 (92)
T PF03131_consen 36 LKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDEL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999997776666666666665555555555555554433
No 13
>KOG1414|consensus
Probab=95.85 E-value=0.00037 Score=57.99 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=60.4
Q ss_pred CcchhhHHHHH---hHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy12101 1 MAEPYLQAVKR---SRVKSRIKTQETMERVNKLK-TENDMLEEKIKILSRELSFLKNLFLAHAGSTN 63 (105)
Q Consensus 1 ~reRNN~AakR---SR~KrKqk~~e~~~Rv~~Le-~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~ 63 (105)
.|+||-+||.+ ||.+++....+++..|+.|+ .+|.-|..+|..|+.|.+.|..++..|...+.
T Consensus 158 rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~~~ 224 (395)
T KOG1414|consen 158 RRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPPCS 224 (395)
T ss_pred hccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCCcc
Confidence 37899999999 99999999999999999999 99999999999999999999999999998875
No 14
>KOG0709|consensus
Probab=95.54 E-value=0.018 Score=50.08 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=49.0
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
||-+.|+-||.|+|.=.+.++.||..-..||..|..+|+.|..++..|-.-|..
T Consensus 258 rNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 258 RNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 799999999999999999999999999999999999999999887776665554
No 15
>KOG3863|consensus
Probab=95.02 E-value=0.066 Score=47.87 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=51.8
Q ss_pred chhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 3 EPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 3 eRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
=||.+||.+||.++=.....++..|..|.+|-++|..+=.++.++|..+|+-|..-
T Consensus 496 gKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 496 GKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSEL 551 (604)
T ss_pred cccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999888763
No 16
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.08 E-value=0.25 Score=32.60 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.|...+-.+..+|..||..|+.++..+..|-..|.+-...
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999876654
No 17
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=94.07 E-value=0.28 Score=34.26 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
....++.||..|+++|..|+.|++.||....-...
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 35578999999999999999999999988755443
No 18
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=93.78 E-value=0.28 Score=39.11 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 9 VKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 9 akRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
|..-||.=|+|..|++..+..+.+++..|+.+|+.|+.++-.|=+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999888744
No 19
>KOG4196|consensus
Probab=93.38 E-value=0.22 Score=37.20 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLAHAGST 62 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~ 62 (105)
.+||.+|..|..+|+.|..|++.++.-+..+...+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999998887664
No 20
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=92.57 E-value=0.3 Score=34.12 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=25.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
-++...+++.+...|+++|..|+.+|+.|+..-+.+..+-..
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 344455566666677777777777777776654555555444
No 21
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.28 E-value=0.43 Score=37.15 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIK---ILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~---~L~kEl~~LK~ll~~ 57 (105)
++..+-++|++||+.|+.++. .|++|+..||.+|.-
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444445555555555555555 456666666666554
No 22
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=92.19 E-value=1.8 Score=27.00 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=35.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
|..++.--.--...+.+|+.+...|..+...|..++..|+..+...
T Consensus 14 R~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 14 REAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566788999999999999999999999998887653
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.00 E-value=0.75 Score=30.52 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
...++.++.+|+.+|..|..+...|..|+..|+.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445666677777766666667777777776664
No 24
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.71 E-value=0.81 Score=31.96 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.-.+++.++.++++||+.|+++...|..|+..|++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45678889999999999999999999999999976
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=91.34 E-value=0.69 Score=29.05 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=23.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
++...+++.+..+|+++|+.|+.+|+.|+..-+.+..+-.
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445566666666666666666666666445455444433
No 26
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.20 E-value=1.1 Score=27.23 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+....+.|..+|+.|..+.+.|+.|+..|+..+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456677777777777777777777777655
No 27
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=91.12 E-value=0.49 Score=29.99 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=27.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
.|+.+..-......++.+|+.||..|++++..++
T Consensus 16 erE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 16 EREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777888899999999999999988765
No 28
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=90.89 E-value=0.59 Score=31.76 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+.+|.+||..|+.+|..|+.||..++.-|-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999999999999999887644
No 29
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=90.44 E-value=0.84 Score=32.95 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=31.6
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 9 VKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 9 akRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
..||+.|.+.|+++.+++.+.|+.+...|+.+|+.+++
T Consensus 96 ~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 96 YWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35888888999999999999998888888888887653
No 30
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=90.20 E-value=0.95 Score=30.15 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.-+..+.++|..|+.+|..|++|+..++.+|....
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999988754
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.13 E-value=1.3 Score=34.38 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
....+.+|++||..|+.+++.+++|++.|+..+..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567778888777777777777766655443
No 32
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.63 E-value=2.4 Score=27.83 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
++...-.+|..|+.+++.|++|+..++
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566777777777777777766554
No 33
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.38 E-value=2.6 Score=27.33 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
|-|.-...++.+..+-+..|..|..+|..|++++..+|.
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556678889999999999999999999999988763
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.29 E-value=2.8 Score=27.75 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=24.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+.+..++..+...|..+|..|+.+..+|+.|-..+..-|.
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666655554443
No 35
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.68 E-value=1.2 Score=35.51 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
-..+|+.+||+|+..+..+|..|+.|++.||.
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999985
No 36
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=88.30 E-value=4.1 Score=24.81 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
-+-....+..|+.+...|..++..|..++..|+.
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566777888888888888888888877763
No 37
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.24 E-value=1.6 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
..+...+..|+.+++.|+.+++.|+.|+..|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777777777777
No 38
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=88.16 E-value=4.2 Score=30.56 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cCCCCCCCchhhHHHHhhc
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA-------GSTNGIDMDDIDLESLLAD 78 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~-------~~~~~~~~~~~dl~~ll~~ 78 (105)
+.-++++.++..|.+|...|..+|..+-++|...+..|..-. .......-..|+.+.||.-
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~v~~~eLL~Y 89 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEKLKSIPKAEKRPVDYEELLSY 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCHHHHHHH
Confidence 455788999999999999999999999999999988887654 2333445677888888864
No 39
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.95 E-value=1.6 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
++.+|..+...|..+|.+|..++..|+.=+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777788888888888777776554
No 40
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.91 E-value=1.7 Score=34.35 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLA 77 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~ 77 (105)
+-..+++.+++.|+.|...||.+|+.+.-+++.+++--...- +|||.++.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y----------~dld~r~~ 103 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY----------LQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHh
Confidence 345689999999999999999999999999999887655543 45666665
No 41
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=87.49 E-value=0.75 Score=39.39 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..|.+||++|+++++.|+.|+..|+.=
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666666543
No 42
>KOG3335|consensus
Probab=87.08 E-value=5 Score=31.31 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=25.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.+.+-+.|++.-+...++|+..-..|+.+|+.++++++.|..-
T Consensus 93 ~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~ 135 (181)
T KOG3335|consen 93 QARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSK 135 (181)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555666666666666777777777777633
No 43
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.92 E-value=2.5 Score=25.71 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
.+...-..|.+||+.|+++|..|+..
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555543
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.86 E-value=3.9 Score=31.28 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
...|+.|+..|+.+++.|.+|+..|.
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 45
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=86.81 E-value=3.9 Score=28.43 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..+++.....|..||+.|+.+++.-+.|-..|=.+
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555544433
No 46
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.74 E-value=2.1 Score=29.36 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKI-------LSRELSFLKN 53 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~-------L~kEl~~LK~ 53 (105)
++..+++|+.+|..|..++.. |..|+..||+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566777777777777776655 5555555554
No 47
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=86.70 E-value=10 Score=33.42 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHhHHHHHh-hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 9 VKRSRVKSRI-KTQETMERVNKLKTEN-------DMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 9 akRSR~KrKq-k~~e~~~Rv~~Le~EN-------~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+.+|.-..-| +..+++++++.|++|. ..++.+|+.|..|+..|+..+.
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 7777777777777554 4788888899999999988874
No 48
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.68 E-value=5.2 Score=30.61 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...+++.+++.|++||..|..++..++++-..|-.++..
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777666543
No 49
>KOG1318|consensus
Probab=86.53 E-value=3 Score=35.94 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=38.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.+..++..|++.|.+.|+..|..|..+|+.|+.+...+...+..+...
T Consensus 286 qq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~ 333 (411)
T KOG1318|consen 286 QQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLT 333 (411)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 355677889999999999999999999999999988877666554433
No 50
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=86.30 E-value=3.1 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
-+.++.+|+.+|..|..+|+.|+.+++.-+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888877654
No 51
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=85.69 E-value=2.5 Score=33.91 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhh
Q psy12101 26 RVNKLKTENDMLEEKIKI-----------LSRELSFLKNLFLAH 58 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~-----------L~kEl~~LK~ll~~h 58 (105)
...+|.+||++|+.++.. |++|+..||.||.-.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344566777777766654 566777777766553
No 52
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.47 E-value=2.8 Score=38.08 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
....+...++.|+.||..|+.+|+.|++|+..|+.-+....
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888998888888888888888887776543
No 53
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.22 E-value=1.4 Score=28.76 Aligned_cols=32 Identities=34% Similarity=0.295 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+.|+.|+.....|..++.+|+.|+..||+...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34677777778888888888888888887643
No 54
>PRK00295 hypothetical protein; Provisional
Probab=85.14 E-value=8.1 Score=25.06 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+..+++.|+.+++.-.+.|-..|....++++.|+..+..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888777777777777766666666666655443
No 55
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=84.66 E-value=3.1 Score=27.16 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=15.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEK 40 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~ 40 (105)
+-=|.+..+++.|..+|+.||..|+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455556666666666666666543
No 56
>smart00338 BRLZ basic region leucin zipper.
Probab=84.55 E-value=7.5 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
--...+..|+.+...|..+...|..++..|+.-+...
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888888766553
No 57
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=84.15 E-value=2.1 Score=26.69 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
..|+.+|+.|+.++..|..-|+.+.+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777776644
No 58
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=84.08 E-value=7.6 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
++..+-.....+...|...|..+|..|+.++..+..-+..+...
T Consensus 67 k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 67 KRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445566666677777777777777777766666544
No 59
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=83.78 E-value=2.9 Score=29.99 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+..+...|++||--|+-+|+.|-..|.
T Consensus 77 lkkk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888888888888886655443
No 60
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=83.48 E-value=3.2 Score=26.68 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
.....++.+..+++.||..|+.+|..|..
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445566666777777777777776654
No 61
>PRK04406 hypothetical protein; Provisional
Probab=83.47 E-value=8.4 Score=25.57 Aligned_cols=40 Identities=3% Similarity=-0.009 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.|..+++.|+.+++.-.+.|-..|....++++.|+..+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777776666666666666666666666554443
No 62
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.39 E-value=2.7 Score=32.72 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
....+|.+||..|++++..|+.++..+..+-.+. ..|..||...
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en-----------~~L~~lL~~~ 112 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAEN-----------ARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhcCc
Confidence 4567899999999999999999999998776553 2466777754
No 63
>PRK14127 cell division protein GpsB; Provisional
Probab=83.31 E-value=4.8 Score=28.75 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+++..-.+.|..||..|+.++..|+.++..++.-+....
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345566677888888888888888888888888777543
No 64
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.23 E-value=3 Score=26.78 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy12101 23 TMERVNKLK 31 (105)
Q Consensus 23 ~~~Rv~~Le 31 (105)
++.++..++
T Consensus 5 lEn~~~~~~ 13 (55)
T PF05377_consen 5 LENELPRIE 13 (55)
T ss_pred HHHHHHHHH
Confidence 333333333
No 65
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=82.97 E-value=3.2 Score=35.62 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.+++.-..|++||..|+.+|+.| |.+++|
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 46677788999999999999999 445554
No 66
>PRK00736 hypothetical protein; Provisional
Probab=82.80 E-value=11 Score=24.53 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..+++.|+.+++.-.+.|-..|....++++.|+..+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766666666655555555555443
No 67
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=82.43 E-value=2.6 Score=28.75 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
+.-...+..++..++.+|..|..+|..+++|
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4455678888888999999998888887754
No 68
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=81.87 E-value=2 Score=26.14 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=10.2
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 10 KRSRVKSRIKTQETMERVNKLKTENDMLEEKI 41 (105)
Q Consensus 10 kRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I 41 (105)
.|.--....+..+++.++..|..||..||.++
T Consensus 13 aK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 13 AKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------HHHHHHHHHHHHHHH
T ss_pred HhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 33344445566666666777777777666665
No 69
>PRK02793 phi X174 lysis protein; Provisional
Probab=81.86 E-value=7.9 Score=25.37 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.|..+++.|+..++.-.+.|-..|....++++.|+..+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666666666655555555555554443
No 70
>PRK00846 hypothetical protein; Provisional
Probab=81.70 E-value=7.7 Score=26.23 Aligned_cols=36 Identities=14% Similarity=-0.033 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
|..+++.|+...+.-.+.|-..|....++++.|+..
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~q 49 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAEL 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444434444444433
No 71
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=81.24 E-value=4.4 Score=32.83 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
...+..++..|.+||+.|+.+++.|+.++.....++.+..+.
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~ 75 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPR 75 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999998888776544
No 72
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=81.22 E-value=7.2 Score=27.45 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..+.+.+.|.++|..|+++|+.|+.+ ++++.+.+
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg----~~~i~e~A 94 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG----RDYIEERA 94 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHH
Confidence 44455566666666666666666666 34455444
No 73
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.11 E-value=7.3 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+..++.||..|+..|+.+.+-+.
T Consensus 16 i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544443
No 74
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.48 E-value=17 Score=27.59 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=26.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
-....+.+...+..++..+.+++..++.+|..++..+...+..+.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666666666666555544
No 75
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=80.21 E-value=4.5 Score=32.51 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKI 43 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~ 43 (105)
+|+..||.|...||+||+.
T Consensus 122 qKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555553
No 76
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.16 E-value=9.1 Score=29.75 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=26.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
+.+...++..+-.+|.+|+..++.++..|+.+++.++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555777777777777777777777777777777
No 77
>KOG3584|consensus
Probab=80.01 E-value=4.9 Score=33.95 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=39.6
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 9 VKRSRVKSRIKTQETMERVNKLKTEN-DMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 9 akRSR~KrKqk~~e~~~Rv~~Le~EN-~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+.|.|+-|-+|..|-......-++|- ..|+.+|..|+..+..|-+-|..-
T Consensus 288 ~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 288 ATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHH
Confidence 45678888888888887777777774 679999999999988887766653
No 78
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.76 E-value=8.3 Score=29.57 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
-|.++......+.++..||..|..-+..+..|+..|+.-+..+..-
T Consensus 39 mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 39 MKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778899999999999999999999999999988877643
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.59 E-value=11 Score=28.61 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+.+..+.+.|+..|+.+...++.+|+.+++++..++.-+....
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666666666665544
No 80
>KOG4343|consensus
Probab=79.40 E-value=2 Score=38.77 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=25.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
+.+-+++...-+.|+.||..|+.+|..|-.|...||
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 455666777777777777777777777777766554
No 81
>PRK02119 hypothetical protein; Provisional
Probab=79.30 E-value=11 Score=24.85 Aligned_cols=40 Identities=5% Similarity=-0.077 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.|..+++.|+..++.-.+.|-..|....++++.|+..+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666666666666655544
No 82
>PRK02119 hypothetical protein; Provisional
Probab=79.11 E-value=15 Score=24.10 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.-+++|-........+|..|+.++..|.+-+..
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666666666666666666654
No 83
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=79.01 E-value=9 Score=24.45 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.|-...-.+..+|..+++.|++++..||.+|.++
T Consensus 26 ~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 26 KRYNKVLLDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556677788888899999999999998764
No 84
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.86 E-value=4.4 Score=31.19 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
..++.+|..+...|+.+++.|..|+.+||.+-.-+...
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kA 48 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKA 48 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999998877655
No 85
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=78.45 E-value=5.2 Score=32.11 Aligned_cols=10 Identities=60% Similarity=0.601 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy12101 30 LKTENDMLEE 39 (105)
Q Consensus 30 Le~EN~~Lr~ 39 (105)
|++||++|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 86
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.11 E-value=9.7 Score=31.05 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+-++.+.++.+.+..|++|.+.|.+++..|+.|...|...-.
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888888888888888888777765443
No 87
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.06 E-value=5 Score=24.84 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
-.+.|..||.+|+.+|+.|+
T Consensus 13 cce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 13 CCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777666543
No 88
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=77.83 E-value=9.4 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
...|.+||+.|..++..-.+|+...+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655443
No 89
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=77.81 E-value=5.6 Score=28.03 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..+...+..+++||+.|.++...|+.|+..|++=
T Consensus 53 ~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455556678888888888888888888877653
No 90
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.77 E-value=4.3 Score=33.74 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.-..++.|+..|+.||..||.+...|..|...+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~ 193 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTY 193 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 357899999999999999999999998666544
No 91
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.61 E-value=21 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.++.|+..|..|+..|+.+++++..|..-+..
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 92
>PRK11239 hypothetical protein; Provisional
Probab=77.23 E-value=5.2 Score=31.89 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
++.||..|+.|.+.|+++|+.|..
T Consensus 188 Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 188 LQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444
No 93
>KOG1760|consensus
Probab=76.87 E-value=17 Score=27.14 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGST 62 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~ 62 (105)
...+++..+.|+++.+.|+.+++....++..||.+|.+.-+..
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdn 125 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFGDN 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567788889999999999999999999999999999877654
No 94
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=76.79 E-value=28 Score=26.15 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+++.+.++..--..+++|+..|..+|+.|+.++..|...+....
T Consensus 73 r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~ 116 (158)
T PF09744_consen 73 RKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLS 116 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444445544578899999999999999999998886665543
No 95
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=76.56 E-value=10 Score=26.72 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy12101 42 KILSRELSFLKNLFLAH 58 (105)
Q Consensus 42 ~~L~kEl~~LK~ll~~h 58 (105)
..|+-|+..||..|...
T Consensus 39 ~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 39 ARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444666666666654
No 96
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.39 E-value=19 Score=25.71 Aligned_cols=41 Identities=15% Similarity=0.358 Sum_probs=18.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
|++-...-..+..+...|..+++.|...++.|+.++..+..
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444443
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.22 E-value=9.7 Score=31.11 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
..+++.++..+..+|+.+..+|..|++++..|+.-|.
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666655554443
No 98
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.11 E-value=18 Score=29.85 Aligned_cols=37 Identities=38% Similarity=0.426 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+.+.|.+.|+.||..|......|-.|+..|+.-|..-
T Consensus 167 e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 167 EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 3444444444444444444444444444454444443
No 99
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.99 E-value=17 Score=30.46 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 10 KRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 10 kRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
-|+|+|=---.+--+..|..|+..+...+.+|+.|..|+..+|.-|...
T Consensus 80 ek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 80 EKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444455567789999999999999999999999999888653
No 100
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=75.87 E-value=7.2 Score=32.74 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.....|.+||++|++++..|+.++..+..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999988888766554
No 101
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=75.33 E-value=12 Score=27.11 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 21 QETMERVNKLKTEND-------MLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~-------~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.||+.|+.+|+-|+. .|..+|..|...|...|.-+.....+
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~ 75 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYG 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 456666666766665 78888888888888888777664443
No 102
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.28 E-value=14 Score=23.80 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+..+++.|+..++.-.+.|-..|....++++.|+..+..-.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888887777777777777777666544
No 103
>PRK04406 hypothetical protein; Provisional
Probab=75.16 E-value=21 Score=23.64 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+++|-........+|..|+.++..|++-+.
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555544444444443
No 104
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.05 E-value=19 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+.-+++|.........+|..|+.++..|..-+..-.
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778888888888888888888888888887754
No 105
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=74.93 E-value=19 Score=25.09 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
..++.++..+.+++..|+..+..+.+++..||
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555554444
No 106
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=74.90 E-value=16 Score=23.46 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
++.+.++..|+.-++.++.+|..+.+.++.++.
T Consensus 16 ~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 16 DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666677777777777776666666665554
No 107
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=74.34 E-value=4.2 Score=25.13 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.+..++..++++++.+++|++.|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555666666655544
No 108
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=74.31 E-value=28 Score=24.57 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.++...+.+|.+||..|+-+-+.|++-+..+..
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666677777777777777777776666655
No 109
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=74.23 E-value=8.2 Score=34.11 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSR----ELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~k----El~~LK~ll~~ 57 (105)
--+.|+...++||+.|..+|+.|++ |+..|++.|..
T Consensus 445 ~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 445 VAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQYLAE 484 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888999999999999999987 89999988764
No 110
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.13 E-value=35 Score=26.14 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=36.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..|.+...++..+..|+.|++.|..++..|..|-+.|..-|..
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888999999999999999999999998888876654
No 111
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=74.04 E-value=12 Score=25.80 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
--++..+.++|+.|.++.++|+.|...-..-+..+.
T Consensus 22 ~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 22 WWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999988877776554
No 112
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=73.87 E-value=9.9 Score=26.39 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.+.+.++.+|++++..|+.+++.|++-+.+.+.
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 356777889999999999999999998877643
No 113
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=73.84 E-value=7.2 Score=29.86 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.|-+.|+.++..+..|+..||+.|.+....
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~ 58 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERH 58 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666677777777777776665544
No 114
>PRK11239 hypothetical protein; Provisional
Probab=73.56 E-value=7.5 Score=31.01 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+...|+.+...|+++|..|+..+..|...|
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677888888888888887777776654
No 115
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=73.42 E-value=24 Score=27.16 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
....++.+.+.|+.+|..|+.+......+...|..++..-
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ra 151 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRA 151 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677778888888888888888888888887777543
No 116
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=73.30 E-value=31 Score=24.64 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12101 42 KILSRELSFLKNLFLA 57 (105)
Q Consensus 42 ~~L~kEl~~LK~ll~~ 57 (105)
..|+-|++.||..|..
T Consensus 39 ~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 39 TALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555554
No 117
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.02 E-value=17 Score=23.83 Aligned_cols=9 Identities=33% Similarity=0.638 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy12101 28 NKLKTENDM 36 (105)
Q Consensus 28 ~~Le~EN~~ 36 (105)
..|..|++.
T Consensus 29 k~L~~ERd~ 37 (69)
T PF14197_consen 29 KRLRRERDS 37 (69)
T ss_pred HHHHHHHHH
Confidence 344444433
No 118
>KOG4797|consensus
Probab=72.93 E-value=10 Score=27.90 Aligned_cols=31 Identities=45% Similarity=0.472 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+.|+-|+...-.|.++..+|+.|+..||.+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455555555555555556666666666543
No 119
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=72.74 E-value=9.4 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGST 62 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~ 62 (105)
++.|.+.-..|+.+|..|+.-++..|...+-..+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~ 36 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRS 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchh
Confidence 467888889999999999999999998877654443
No 120
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=27 Score=25.43 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
-..++..|.+.|+.....|+.+.+.|++++..|+..|...-+.
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3568889999999999999999999999999999988865433
No 121
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.39 E-value=24 Score=23.06 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+.-+++|-........+|..|+.++..|.+-|...
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666666666667777777777776666553
No 122
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=72.20 E-value=14 Score=24.53 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.+++.....-.++|.+|.++|..|...+..|-.-
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777888999999999998888877543
No 123
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=72.00 E-value=17 Score=26.84 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=36.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 14 VKSRIKTQETMERVNKLKTEND------------MLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~------------~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.+...+..+++..+.+|.+|+. +|+.+++.|.+|++.+++........
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSS 95 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777888888874 69999999999999999988876543
No 124
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.79 E-value=16 Score=26.08 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..++...+.+|.+||..|+.+-+.|++.+..+..
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456677777778888888888888777777644
No 125
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.79 E-value=27 Score=25.50 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..|...|..|+.+|+.+...+..++..+
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 126
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=71.58 E-value=41 Score=29.45 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
..|.+|-+.|..+++..++|+..|+.-+-
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655443
No 127
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=71.48 E-value=19 Score=22.98 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.+......++++.+.|+.+...|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455555555555555555555555543
No 128
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.39 E-value=29 Score=23.55 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
++=.+...++|.-...|-...+..+.+.+.|..|+.+|...+..-
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555556666666666666666666777777666543
No 129
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.33 E-value=35 Score=25.91 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...++..++..|+.++..|+.++..|+...+.+..-+..
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888888888888888777766554
No 130
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.26 E-value=35 Score=24.84 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+..++.++...++.|...|..++..|..+++.+..-|....
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666666666666666666666544
No 131
>PF14645 Chibby: Chibby family
Probab=70.49 E-value=14 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...|.++|.+|+.+-..|+-+++.|=+||...
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555666666543
No 132
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.38 E-value=15 Score=28.04 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+-.+=++|...|.+-|..|+.++++....++.|..
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~ 102 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQE 102 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666665555554444444443
No 133
>KOG4010|consensus
Probab=70.13 E-value=9.2 Score=30.37 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 31 KTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
+.|-+.|+.++..+..||..||+.|.+...-
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH 73 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERH 73 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888888888888888888875433
No 134
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.08 E-value=14 Score=25.30 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKI 41 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I 41 (105)
++..+++|+++|..|..++
T Consensus 23 LQmEieELKEknn~l~~e~ 41 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHhhHhHHHH
Confidence 3445555655555444433
No 135
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=69.81 E-value=9.5 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L 44 (105)
++.+...|..||..|+.++..|
T Consensus 47 l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 47 LEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444433
No 136
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.79 E-value=26 Score=23.02 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.....+++.+...|..+++.+..++..|+..+..
T Consensus 38 Lr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 38 LRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555556666666666666666655543
No 137
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.75 E-value=28 Score=22.68 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...+..+...++.+-..|+.++..+.+++..++.-|...
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888888888777654
No 138
>KOG4657|consensus
Probab=69.55 E-value=21 Score=29.04 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=37.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
++.....-+.+.+..+.+|-+.|+..++.|+.|.+.+|.+|.+..+
T Consensus 83 ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 83 EKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455667778888889999999999999999999999998764
No 139
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.31 E-value=23 Score=29.63 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhH-----HHHhh
Q psy12101 40 KIKILSRELSFLKNLFLAHAGSTNGIDMDDIDL-----ESLLA 77 (105)
Q Consensus 40 ~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl-----~~ll~ 77 (105)
+|++|++=++.+|.=|..+-++ .-.-|.|||| +.||.
T Consensus 125 EIkQLkQvieTmrssL~ekDkG-iQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 125 EIKQLKQVIETMRSSLAEKDKG-IQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHHHHHHHHHHhhhchhhhh-HHHHHhhhhhhHhHHHHHHH
Confidence 3444444444444444443222 1112566664 55554
No 140
>PF14645 Chibby: Chibby family
Probab=69.24 E-value=18 Score=25.86 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
....+..+...|++||..|+-+++.|-.-+.
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788999999999999998866554
No 141
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=69.15 E-value=37 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+++.++-|.=-|..|..+|+.|+.|+.
T Consensus 45 ~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 45 LEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566666665555
No 142
>PRK04325 hypothetical protein; Provisional
Probab=68.95 E-value=30 Score=22.73 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+..+++.|+.+++.-.+.|-..|....+++..|+..+..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888887777777777777777777776655543
No 143
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.67 E-value=25 Score=28.97 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=25.8
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTENDMLEEKIK-------ILSRELSFLKNLFLAH 58 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~-------~L~kEl~~LK~ll~~h 58 (105)
.-++-=|.|-++++..-.+|-.||..|+++++ .|..|++.|-.+|...
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455556666555555555555555444 4455555555555543
No 144
>PRK00736 hypothetical protein; Provisional
Probab=68.54 E-value=29 Score=22.43 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
-.+.-+++|-........+|..|++++..|.+-+....
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455778888888888888888888888888776643
No 145
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=68.54 E-value=14 Score=29.06 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy12101 33 ENDMLEEKIKI 43 (105)
Q Consensus 33 EN~~Lr~~I~~ 43 (105)
||..|...|+.
T Consensus 126 ENe~Lh~~ie~ 136 (200)
T PF07412_consen 126 ENEKLHKEIEQ 136 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444433333
No 146
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.35 E-value=30 Score=28.12 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=36.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+..=..|+.....++..|+++-+.|.++|....+|+.+|...-
T Consensus 68 ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk 111 (258)
T PF15397_consen 68 AKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK 111 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444567888899999999999999999999999999987643
No 147
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.20 E-value=20 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
...+++|.+.|+.+|+..+.|++.||..
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544555545443
No 148
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.18 E-value=17 Score=26.49 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy12101 38 EEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 38 r~~I~~L~kEl~~LK~ll~~h~ 59 (105)
...|..|+.|+..|..-|....
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554433
No 149
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=68.00 E-value=10 Score=24.55 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 36 MLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.|..+|..|+.|+..++..+...
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555443
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.87 E-value=19 Score=26.93 Aligned_cols=27 Identities=44% Similarity=0.458 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.++..|+.++..|+.+|..|..++...
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEK 142 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 151
>PHA03155 hypothetical protein; Provisional
Probab=67.49 E-value=11 Score=27.51 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
+.|.++|..|+-|+..||..+.++.+
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~~~~ 36 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQHGN 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34566666666677777776666553
No 152
>PF15058 Speriolin_N: Speriolin N terminus
Probab=67.39 E-value=20 Score=28.38 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
...++.|-.||+.|+++|..+ +|+..||..|.+-..
T Consensus 11 rhqierLv~ENeeLKKlVrLi-rEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLI-RENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 456778889999999999865 577789988776443
No 153
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=67.30 E-value=2.9 Score=28.66 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..+...+..|..+|..|+.+|..|..++..++.
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 345555667777777777777777666666643
No 154
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.22 E-value=21 Score=31.47 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12101 40 KIKILSRELSFLKNLF 55 (105)
Q Consensus 40 ~I~~L~kEl~~LK~ll 55 (105)
+.++|+.|...+..++
T Consensus 117 ~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 117 EIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554444
No 155
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=67.21 E-value=23 Score=27.93 Aligned_cols=30 Identities=37% Similarity=0.374 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
+.-..|.++...|..+|..|+.|+..|+.+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555544
No 156
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=67.13 E-value=21 Score=23.82 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
+..++..++..|+.+...++.++..+..++.+|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555444
No 157
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.61 E-value=22 Score=32.93 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=28.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
++...-.....+..|++.+++||..|+-+|..|.+||.
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444577899999999999999988777766654
No 158
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.42 E-value=20 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.|..+...|+.++..|..|...|+..+
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555666655555544
No 159
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=66.41 E-value=34 Score=23.30 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
..++..++..-+.|.++|..-|..|+..|..+..|=.
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Lnk 43 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNK 43 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888888777777666543
No 160
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=66.21 E-value=11 Score=27.49 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
+.|.+++..|+.|+..||..+.++.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46778888888888888888888764
No 161
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=66.15 E-value=10 Score=31.70 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
.-.+++..|+.+|+.+..+|+.+|..|+++
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344566667777766666666666666553
No 162
>KOG2391|consensus
Probab=65.83 E-value=20 Score=30.74 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=38.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLA 77 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~ 77 (105)
|++++++..=..+|+.+-+.|+.+...|.+.++.|+.-..+-- + ...++.++|+|.-+.
T Consensus 238 kRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal-~-~~~n~~~~~~D~~~~ 296 (365)
T KOG2391|consen 238 KRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL-E-KAENLEALDIDEAIE 296 (365)
T ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-h-hhccCcCCCchhhhh
Confidence 3455666666677888888888888888888888887776611 1 111255566554443
No 163
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.76 E-value=21 Score=29.00 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.|.+|+..+++++.+|..|+..|-..+.+..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666544
No 164
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.69 E-value=39 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
|.++|.-+|+-...+..+|++|++.+..|..
T Consensus 46 laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 46 LAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777778888888888877776654
No 165
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.60 E-value=40 Score=22.94 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=25.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.....+....+..|..+...|+.+|..+...+..++.
T Consensus 73 ~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 73 KKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777788888888888888777776653
No 166
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.51 E-value=31 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+...|+.+++.|......+-.||-.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555555555544
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=65.49 E-value=32 Score=28.89 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
++...+..|+.+|..|+.++..+++|+..++..+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666554
No 168
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=65.34 E-value=50 Score=28.35 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=43.8
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
.+++.=++..+|-+.+++.+++--.+|.+|-..+..+++...+++..++..+.+-..
T Consensus 314 ~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~~ 370 (373)
T COG5019 314 EERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKS 370 (373)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444556677778888888888888888888888888888888888888876443
No 169
>PRK00846 hypothetical protein; Provisional
Probab=65.21 E-value=40 Score=22.77 Aligned_cols=33 Identities=6% Similarity=-0.179 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+++|-+........|..|+..+..|++-|.+..
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555555555555443
No 170
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=65.21 E-value=34 Score=22.04 Aligned_cols=27 Identities=33% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
..++..|+..|+.|..++++.|..=..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777765443
No 171
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=65.13 E-value=16 Score=24.40 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
..+-+++..+|...+++|+.+|+.|+.
T Consensus 37 s~~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 37 STDDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999987765
No 172
>KOG3119|consensus
Probab=64.96 E-value=30 Score=27.68 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
++++|.....+..--..=.+.+.....+|..|.+|+..||..+.+...
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555666678888899999999999888887653
No 173
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=64.91 E-value=29 Score=29.11 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
+...+.++.+...|+.++..++.++..++.|+..|+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35667788888888888888888888898888888765
No 174
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.44 E-value=39 Score=22.84 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
...+..+.+.++.+-..|..+++.+.+++..|+.-|.
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888887776554
No 175
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=64.01 E-value=13 Score=27.14 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
-.+++.++..|+-||..|+.+|..=.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46788899999999999999987644
No 176
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=63.84 E-value=9.9 Score=23.05 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
..++...-..|...-..|+.++..|..|...||...
T Consensus 9 n~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 9 NRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334444444444444444455555555555555544
No 177
>KOG3156|consensus
Probab=63.83 E-value=35 Score=27.42 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHH
Q psy12101 15 KSRIKTQETMERVNKL----------KTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESL 75 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~L----------e~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~l 75 (105)
|.+|..-+.++++... ..|=..|+++.+.|+.|++.+|.-|..--...-...-=|++|++.
T Consensus 89 kaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkg 159 (220)
T KOG3156|consen 89 KAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKG 159 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhc
Confidence 4556666666666543 467788999999999999999998887554432222334555443
No 178
>PHA03162 hypothetical protein; Provisional
Probab=63.31 E-value=13 Score=27.90 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 36 MLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.|.++|..|+.|+..||..+.++.+.
T Consensus 17 eLaaeL~kLqmENK~LKkkl~~~~~~ 42 (135)
T PHA03162 17 DLAAEIAKLQLENKALKKKIKEGTDD 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45555666666666666666555433
No 179
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.04 E-value=20 Score=26.61 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
+++++..+..+|+.|++|++.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHH
Confidence 344444555555555555544
No 180
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=63.00 E-value=22 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=27.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
+--..|..++|.+.++-+||+|-+.-|.++..|++.
T Consensus 112 s~~~~k~~eMe~Qv~iL~lE~eLe~ar~kL~~lRk~ 147 (152)
T PF01608_consen 112 SLHQAKRQEMEAQVRILKLEKELEKARKKLAELRKA 147 (152)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888889999999988888888888775
No 181
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=62.77 E-value=17 Score=23.61 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.+.+.-+|-..|+++|-.|+.||..+|.=..
T Consensus 4 ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 4 ELREVLQERNELKARVFLLEEELAYYKSELL 34 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4556677888999999999999999996444
No 182
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=62.67 E-value=12 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLAHAGSTN 63 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~ 63 (105)
-|..--.+|.+|+.||.+||..|-+-.....
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3555567899999999999999877655533
No 183
>PRK14160 heat shock protein GrpE; Provisional
Probab=62.63 E-value=28 Score=27.38 Aligned_cols=26 Identities=46% Similarity=0.592 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
+..|+.++..|+.++..|.+++..|+
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elk 81 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALK 81 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 184
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=62.56 E-value=5.4 Score=25.08 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~l 54 (105)
+.|+.+|..|+.|+..||.+
T Consensus 14 e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred chheeeHHHHHHHHHHHHHH
Confidence 46777778888888777764
No 185
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.44 E-value=71 Score=25.85 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+|..-.+++.+...|..+...+.+++..+..++..+.......
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555566666666666666666666666666655543
No 186
>PRK14127 cell division protein GpsB; Provisional
Probab=62.36 E-value=19 Score=25.72 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
...=..++.++-+.|..++..|+.|+..|+.-+..+...
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333345666677777777777777777777777766543
No 187
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.07 E-value=31 Score=28.21 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+.++++.++.++..|-..|+.+|+.|+.-+.....+|-..+
T Consensus 66 ~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 66 SKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888777777666665543
No 188
>PRK11637 AmiB activator; Provisional
Probab=61.67 E-value=64 Score=26.83 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+..+++..+..++.+-..|+.+|..+++++..++..|..
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666665555544
No 189
>PHA03155 hypothetical protein; Provisional
Probab=61.42 E-value=13 Score=27.22 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKI 43 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~ 43 (105)
-.+++.++..|+-||..|+.+|.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468899999999999999999965
No 190
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=61.15 E-value=23 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
...+.+|-.|.+.|+.+|.-|.+.+..|..-+.
T Consensus 53 p~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 53 PKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888888888876554
No 191
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=60.93 E-value=60 Score=28.25 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=49.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
++.-+++..+-..++..+.++...+...+..|-+|+..|..+|.. +++. -.+.++-|+-||+++
T Consensus 145 ~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~-~ktr--G~wGEv~Le~ILe~~ 208 (448)
T COG1322 145 REQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKG-NKTR--GNWGEVQLERILEDS 208 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcc--ccHHHHHHHHHHHHh
Confidence 344445555556667778888888888889999999999999987 3332 268999999999987
No 192
>KOG3335|consensus
Probab=60.81 E-value=33 Score=26.79 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=23.5
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
++-+++++--+++..++..|+.+.+.++..+.+|...+
T Consensus 99 ~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 99 KKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKL 136 (181)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666666666666666666665333
No 193
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=60.72 E-value=25 Score=22.15 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++.|..+|..+++.+.+++..+...|..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5778888999999999999988887653
No 194
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=60.39 E-value=22 Score=23.54 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+.+..+..|.+||=.|+-+|-.|...+.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566789999999999999998888776
No 195
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=60.28 E-value=33 Score=27.64 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.++++|++....+..+...+++|+..+++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555443
No 196
>PLN02320 seryl-tRNA synthetase
Probab=59.94 E-value=31 Score=30.42 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
..++..++..|.++-..|++++..++.++..
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555656555555555555555444
No 197
>KOG4797|consensus
Probab=59.79 E-value=31 Score=25.40 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKI 41 (105)
Q Consensus 8 AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I 41 (105)
|||--=+-=|.+..++..|...|++||.-|+.-+
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555555556666677777777777777666544
No 198
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=59.78 E-value=22 Score=22.72 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.+++|...||+.-...+.+...-+.++..++
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677788777777777777777777766543
No 199
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=59.74 E-value=28 Score=29.19 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
..++..|.++|+.|+..+..+.
T Consensus 143 ~~~~~~L~~enerL~~e~~~~~ 164 (342)
T PF06632_consen 143 QAENEHLQKENERLESEANKLL 164 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 200
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=59.62 E-value=9.7 Score=33.57 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
++++|++|.+.|+++++.|.+.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44444444444444444433333
No 201
>PHA03162 hypothetical protein; Provisional
Probab=59.54 E-value=15 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKI 41 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I 41 (105)
+-.-..+++.++..|+-||..|+.+|
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999
No 202
>PRK15396 murein lipoprotein; Provisional
Probab=59.10 E-value=28 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++++|..+-..|..+|.+|..++..++.-...
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778888888888888888777765543
No 203
>PRK00295 hypothetical protein; Provisional
Probab=58.77 E-value=47 Score=21.46 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.+.-+++|-........+|..|+.++..|.+-+...
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577777777888888888888888887777664
No 204
>KOG3433|consensus
Probab=58.76 E-value=49 Score=26.30 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=26.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
+=+++|.=-.+++.|.++|+++-..|+..++.|+.|+..++
T Consensus 103 ~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 103 SIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555556666666777777777777777777766654
No 205
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=58.76 E-value=21 Score=23.72 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
..|.++|..|+.|+..|+.-+..+..+
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~~s 54 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKKAS 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456677777777777777776665444
No 206
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=58.55 E-value=29 Score=29.06 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.++..+...|..|...|+.++..++.++..||.-+..+...
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 34556667777777777777777777788888877776544
No 207
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=58.31 E-value=22 Score=28.25 Aligned_cols=26 Identities=46% Similarity=0.591 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..||..|+.+|..|.+++..||..+
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555444
No 208
>PLN03188 kinesin-12 family protein; Provisional
Probab=58.30 E-value=22 Score=34.96 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILS----RELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~----kEl~~LK~ll~~ 57 (105)
-+.|+...++||+.|.++|+.|+ .|+..|++++.+
T Consensus 1216 a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1216 AQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999996 688999997743
No 209
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=58.28 E-value=6.1 Score=29.62 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
...++..+..|+.+..+|+.+|..|..|+.||++-+..+...
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~ 51 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQK 51 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888888877765443
No 210
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=58.25 E-value=54 Score=23.73 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=25.8
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHH
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTE-N-------DMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~E-N-------~~Lr~~I~~L~kEl~~LK~l 54 (105)
..+.++...+..++.++..+..+ + +.|+.+|+.|++++..|.+-
T Consensus 54 q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 54 QAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666554332 3 56777777777777766553
No 211
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.14 E-value=29 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|...+..|+.++..+..++..|+..+..
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555544443
No 212
>KOG1853|consensus
Probab=57.92 E-value=37 Score=28.49 Aligned_cols=43 Identities=26% Similarity=0.164 Sum_probs=31.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
-.+.-+.++.-...+|+..|-.|..++..|+.|+..+|+-+..
T Consensus 42 gSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~ 84 (333)
T KOG1853|consen 42 GSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED 84 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777788888888888888888888777776654
No 213
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=57.91 E-value=42 Score=20.60 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++-..+.+|.+--..|+..+.+-.+|+.+||+.+..
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777788888899999999999999999875
No 214
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.89 E-value=58 Score=22.35 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+.+.+..+....+.|..+..+|+.|-..+.+.|..
T Consensus 36 ~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 36 SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444666666776666665555543
No 215
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=57.87 E-value=31 Score=31.23 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=29.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
+++..-++-.+++.+|+.|..|+..|+.+|+.+..|+..
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~ 111 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSR 111 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777888888888888888888877776653
No 216
>PRK10722 hypothetical protein; Provisional
Probab=57.77 E-value=52 Score=26.83 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.|.-|.|-++=|-+. ..+.+.|.+.+..|+.++..++.-|+.|.++=.+-
T Consensus 160 LaeEr~Ry~rLQq~s--D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 160 LAEERQRYQKLQQSS--DSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666655444 46688999999999999999999999999875554
No 217
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=57.56 E-value=3.4 Score=33.46 Aligned_cols=31 Identities=29% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.++..-|..|..||++|+.++++|+.|...|
T Consensus 132 ~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 132 ADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999988
No 218
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=57.02 E-value=26 Score=23.87 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|-++|..|..++..-+.|+..|..++.+
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~s 30 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGS 30 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555443
No 219
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.01 E-value=17 Score=28.98 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L 44 (105)
+++.||+.|++|...|+++++.|
T Consensus 189 dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 189 DLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555443
No 220
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.60 E-value=58 Score=21.89 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.-+..|.+.|+.+-..|...+..+.+++..|+.-+.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777777776666554
No 221
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=56.57 E-value=60 Score=22.01 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.++..++..|...-..|-.+|+..+.|...|+.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777777663
No 222
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.49 E-value=39 Score=30.98 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.+...++.+...|+.+++.|+.+|+.|+.+++.++.-..
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666655444
No 223
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=56.48 E-value=94 Score=24.22 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...+.........|+.+|..|+.|+.+++....+-
T Consensus 109 rk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeE 143 (312)
T PF00038_consen 109 RKDLDEETLARVDLENQIQSLKEELEFLKQNHEEE 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34455555556679999999999999999988763
No 224
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.20 E-value=47 Score=22.24 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 7 QAVKRSRVKSRI----KTQETMERVNKLKTENDMLEEKIK 42 (105)
Q Consensus 7 ~AakRSR~KrKq----k~~e~~~Rv~~Le~EN~~Lr~~I~ 42 (105)
.|.++=|.++.+ ....+..++..|..+|..|+.+|+
T Consensus 60 ~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 60 SALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666665544 456678888899999999988875
No 225
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=55.96 E-value=16 Score=19.68 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 33 ENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK 52 (105)
|-.+|+.+|..|+.+|+.-+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888877543
No 226
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=55.92 E-value=1.3e+02 Score=25.53 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+++++++.++++|-..+.+.+..-++-+..|..+|..
T Consensus 184 ~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdd 221 (323)
T PF08537_consen 184 IDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDD 221 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444455555555544
No 227
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.64 E-value=49 Score=22.28 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.+...+..++..|+++-..++.++..++..+..+
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777777777777777776543
No 228
>KOG2483|consensus
Probab=55.57 E-value=60 Score=25.93 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=26.7
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
..-.+=..+...-++.++.|+.||..|++++++|..
T Consensus 105 ~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~ 140 (232)
T KOG2483|consen 105 EHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSL 140 (232)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445556666777888899999999999988873
No 229
>KOG0982|consensus
Probab=55.47 E-value=43 Score=29.73 Aligned_cols=35 Identities=31% Similarity=0.293 Sum_probs=18.9
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 9 VKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 9 akRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L 44 (105)
+++-|+|.-+++. .+.|+.+|+.||..||..|.-|
T Consensus 289 ~k~eReasle~En-lqmr~qqleeentelRs~~arl 323 (502)
T KOG0982|consen 289 IKKEREASLEKEN-LQMRDQQLEEENTELRSLIARL 323 (502)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544432 3556666666666666555443
No 230
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.37 E-value=37 Score=30.01 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+|.+|-.+|+.++.+|+..+..|..-|.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777776663
No 231
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.27 E-value=18 Score=22.20 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDML 37 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~L 37 (105)
...+.+++.+++|++.|
T Consensus 51 ~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 51 RRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444455555554444
No 232
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=55.26 E-value=49 Score=26.66 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
..+..+++.|++|+..||.+|.....
T Consensus 86 ~~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 86 EQLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 34456678889999999999986543
No 233
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=55.10 E-value=42 Score=22.11 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.++.+.+..|-.||..|+. .|+.-+..||+-|..
T Consensus 2 ~e~~~~l~~LL~EN~~LKe---alrQ~N~~Mker~e~ 35 (68)
T PF11577_consen 2 EEMQQQLQELLQENQDLKE---ALRQNNQAMKERFEE 35 (68)
T ss_dssp -----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHH
Confidence 3567778888888888884 444455555555443
No 234
>PHA00728 hypothetical protein
Probab=55.07 E-value=17 Score=27.32 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
..|++|.+||+.|+.+++.|.
T Consensus 5 teveql~keneelkkkla~le 25 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELE 25 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHH
Confidence 457888888888888776543
No 235
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.94 E-value=35 Score=30.47 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
...++.++..|+.|+..|+.++..|..+|..
T Consensus 505 ~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 505 LNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666666666665
No 236
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=54.73 E-value=56 Score=25.76 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...+|+.|...|+.+|...+.++..|+..-...
T Consensus 132 ~~~el~~ek~kL~~q~~e~~e~lr~L~~~k~~r 164 (221)
T PF10376_consen 132 KQQELEEEKRKLEKQVDEKEEELRRLKLVKQYR 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467888899999999999999998888766554
No 237
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.55 E-value=46 Score=25.27 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy12101 37 LEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 37 Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|-++++.|++++..|+.-+..
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555543
No 238
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=54.39 E-value=1.1e+02 Score=24.27 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..-+.+.|....+....|+.+.+.|.+|+..||++.+-
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~ 140 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLY 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56788999999999999999999999999999998764
No 239
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.30 E-value=69 Score=24.70 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+-.+...|+...+.....|..+|..|..+|...|.-+..
T Consensus 184 ~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~ 222 (237)
T PF00261_consen 184 KLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK 222 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666777777777777777766666554
No 240
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=54.20 E-value=66 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+....++....|++|...|..|+.++..|++-|...
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677778999999999999999988887766643
No 241
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.12 E-value=67 Score=22.17 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy12101 24 MERVNKLKTENDML--EEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 24 ~~Rv~~Le~EN~~L--r~~I~~L~kEl~~LK~ll~~ 57 (105)
..|+..+|.+-..| +..|..|+-++..++.-+..
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 55555555555555 55555555555555544443
No 242
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.90 E-value=93 Score=27.12 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=34.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 8 AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
+..++....+++...++..+..|+.++..++.+|.....++..++.-|..-..
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 34445555566666677777777777777777777776666666666655443
No 243
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=53.81 E-value=1.2e+02 Score=24.48 Aligned_cols=49 Identities=29% Similarity=0.399 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 28 NKLKTENDMLEEKI---KILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I---~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
..|.++-..|...- ..|..++..|...|.. .+. .| .+.++.|+.||+.+
T Consensus 34 ~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~-~k~-rG-~wGE~~Le~iLe~~ 85 (304)
T PF02646_consen 34 GSLKEQLKQLSEANGEIQQLSQEASNLTSALKN-SKT-RG-NWGEMQLERILEDS 85 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-CCc-hh-hHHHHHHHHHHHHc
Confidence 34444443443333 8999999999999993 322 22 68999999999986
No 244
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=53.36 E-value=49 Score=23.82 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLE-EKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr-~~I~~L~kEl~~LK~ll~~ 57 (105)
+|+.|+.+|+.|-...+ .+-+.=+.||+..|+++..
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~e 40 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLE 40 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHH
Confidence 67888999999999988 5655558888888888774
No 245
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=53.16 E-value=38 Score=23.38 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++++|..+-..|..+|.++..++..++.-..+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a 56 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYA 56 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999887644
No 246
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.14 E-value=48 Score=29.76 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+...+|.++|..|+.++..|+.++..|+.-|
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333
No 247
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=53.08 E-value=47 Score=25.23 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLA 77 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~ 77 (105)
+..+..|..|+..|.++-+.+...+..|+.||..+.+... .+.-.+|=+||.
T Consensus 22 e~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~--vl~r~~L~allR 73 (147)
T PF02090_consen 22 EQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGC--VLSREELYALLR 73 (147)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccc--cccHHHHHHHHH
Confidence 3457789999999999999999999999999999887743 334444445443
No 248
>PLN02678 seryl-tRNA synthetase
Probab=52.88 E-value=51 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
++..++.+|.+|...|+.++..++.++.
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 249
>KOG0614|consensus
Probab=52.82 E-value=33 Score=31.53 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+--+.+|.++.++|...|+.|+.|++.++.+.-+.+
T Consensus 44 qt~~~~l~~~~~~~~~~i~~ltnel~k~r~~~p~~~ 79 (732)
T KOG0614|consen 44 QTILEELIKEISKLEGEIAKLTNELDKLRSVLPQKA 79 (732)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhcCCcccc
Confidence 344778899999999999999999999999664433
No 250
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=52.56 E-value=91 Score=22.89 Aligned_cols=42 Identities=21% Similarity=0.372 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
++-.+|.....+++..-..-+..++.++.++ ||+++.|+...
T Consensus 38 ~er~ee~~~~~~~~~er~~kl~~~r~~m~~~----------Gis~~eL~~~~ 79 (135)
T PRK10947 38 NERREEESAAAAEVEERTRKLQQYREMLIAD----------GIDPNELLNSL 79 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHhccc
Confidence 3444455555666666666678888888774 57788888654
No 251
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=52.30 E-value=80 Score=22.78 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRE----LSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kE----l~~LK~ll~~ 57 (105)
.+-..++.+|+.||.....+....-+| +..+..+|..
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888887766665555444 4444444443
No 252
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.23 E-value=74 Score=21.77 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
|.+...+.+.+..+..-+++|+.+-++|+.|-..+.+-|
T Consensus 31 KEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 31 KEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555544443333
No 253
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.02 E-value=53 Score=25.97 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy12101 36 MLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.|..+|+.|+.|+..||+.+..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 4445555555555555555444
No 254
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=52.02 E-value=53 Score=26.44 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
+.+..+++.+..++..|...++.++..+++++..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677888889999999999999999999999888764
No 255
>KOG0995|consensus
Probab=52.00 E-value=79 Score=28.73 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=36.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+.+.+.+...++.|..|-+.-+.+++.|+.+++.||..+.-+
T Consensus 286 ~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 286 KSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677888899999999999999999999999999999876
No 256
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=51.93 E-value=1.1e+02 Score=24.90 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
=..-.+..+.++..+..|..+...|..+|+.-+.|++..+.-|..
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888889999999999999999999999988877765
No 257
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=51.93 E-value=58 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+-.+.++|++|-+.|-..++.+.++=+|+..-|..-.
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq 41 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQ 41 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999988776543
No 258
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=51.52 E-value=9.8 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
|.|+++ -+.|..++.+|+.++..|+.|+ .+++.+.
T Consensus 20 E~ELdE-KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 20 ESELDE-KENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHH-HHHHHHCH----------------------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 344422 3456666666666666666666 4544443
No 259
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=51.51 E-value=47 Score=19.30 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.|..|.+.|+.+-++|+.-+..|+
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666665554
No 260
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.38 E-value=66 Score=26.55 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++.+..+|+..+..|..++..++.++..|+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666554
No 261
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.36 E-value=64 Score=20.81 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
.....+-++...|-.+|+.+...|+.+++.++
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666667777777776666654
No 262
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.33 E-value=34 Score=24.89 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy12101 29 KLKTENDML 37 (105)
Q Consensus 29 ~Le~EN~~L 37 (105)
+|++|+..|
T Consensus 120 ~l~~e~~~l 128 (169)
T PF07106_consen 120 ELEEEIEEL 128 (169)
T ss_pred HHHHHHHHH
Confidence 333333333
No 263
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=51.20 E-value=66 Score=20.90 Aligned_cols=46 Identities=22% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhh
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLE-----------EKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr-----------~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+=+..-..|+..++.+|.+|--.|+ .+|..+++++..++.++.+..
T Consensus 8 elr~ls~~eL~~~l~elk~elf~LRfq~atgql~n~~~ir~~RrdIARikTil~ek~ 64 (67)
T CHL00154 8 DIIDLTDSEISEEIIKTKKELFDLRLKKATRQNFKPHLFKHKKHRLAQLLTLLSSRL 64 (67)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556777778888888877777 456677777777777776654
No 264
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=50.96 E-value=24 Score=24.39 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIK-------------ILSRELSFLKNLF 55 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~-------------~L~kEl~~LK~ll 55 (105)
..|.+|...|+.+|+ .|+.|+..|+.+.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443 2455666666655
No 265
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=50.69 E-value=67 Score=21.45 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
...|..|..|++.|-.++.....|+..++.--
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888777665
No 266
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=50.67 E-value=57 Score=21.64 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
...++..|+++-..|+.++..+..++..++..+
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888887777654
No 267
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=50.32 E-value=67 Score=21.16 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..+..++++...|+.+-..|+-|.+.|..
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33555666666666666656555555543
No 268
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=50.30 E-value=36 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.+.++-+.|+.+|..|..+++.+
T Consensus 109 ~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 109 ELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444443
No 269
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=50.17 E-value=33 Score=25.36 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCchhhHHHHhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS-TNGIDMDDIDLESLLA 77 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~-~~~~~~~~~dl~~ll~ 77 (105)
.|-..|-+.+.+=|+.|+.+|..|++.+..++..-.....+ -.+..+.+-.|+.+|.
T Consensus 4 nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llk 61 (129)
T PF15372_consen 4 NEWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLK 61 (129)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHH
Confidence 34456677788889999999999999999888644332221 1122344444555554
No 270
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.11 E-value=65 Score=27.27 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
|.++-..|+.+|..|.+++..+..-+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 271
>KOG1962|consensus
Probab=50.10 E-value=43 Score=26.68 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
|++||+.+.+..+.|++|+....
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~ 171 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQ 171 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555554444443
No 272
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=49.61 E-value=1e+02 Score=23.73 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 10 KRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 10 kRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..+-++.|+.++.+... |+++++.+.+.|+.|++++..++..+..
T Consensus 22 s~~~~~~kqve~~~l~~---lkqqqd~itk~veeLe~~~~q~~~~~s~ 66 (165)
T PF09602_consen 22 SLFASFMKQVEQQTLKK---LKQQQDWITKQVEELEKELKQFKREFSD 66 (165)
T ss_pred HHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667776666544 7778888888888888888777666554
No 273
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=49.37 E-value=5.6 Score=30.99 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.+.-+.++.+|+++.+..+.+|...+.|+..||.++.+-..+
T Consensus 6 Vq~Qq~~i~ELk~~~aeq~~ql~eqkREl~lLk~yirAlR~s 47 (179)
T PF08941_consen 6 VQQQQTKIAELKKEQAEQQQQLSEQKRELELLKEYIRALRSS 47 (179)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455678899999999999999999999999999999875443
No 274
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=48.91 E-value=65 Score=23.09 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
..+..|+++|.+|+++=..|+-+++.|-+||.+.
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtet 105 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAET 105 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777653
No 275
>KOG1055|consensus
Probab=48.73 E-value=25 Score=33.17 Aligned_cols=43 Identities=30% Similarity=0.294 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
..+.-++|-..|+.||..|+.+|.+..+.+..+|+-+......
T Consensus 753 ~~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~~~~~ 795 (865)
T KOG1055|consen 753 VNENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQPRPRK 795 (865)
T ss_pred cchhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhccccccc
Confidence 3455567899999999999999999999999999999876544
No 276
>PF15556 Zwint: ZW10 interactor
Probab=48.65 E-value=1.5e+02 Score=24.19 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=18.7
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHH
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKT 32 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~ 32 (105)
|-.+|..|.|...|+|...-+.....|.+
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae 141 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAE 141 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888887665444444443
No 277
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.62 E-value=54 Score=29.91 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
..+..|+.|-...+.++..|+.|+
T Consensus 552 ~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 552 SELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 278
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.20 E-value=84 Score=22.83 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
...+.+.+..+|.+|.+.+..++..+..++..++..+....
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566777777788888888888888877777777666544
No 279
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=48.17 E-value=1.1e+02 Score=22.58 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy12101 13 RVKSRIKTQETMERVNKLKT---ENDMLEEKIKILSRELS 49 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~---EN~~Lr~~I~~L~kEl~ 49 (105)
|+.-+....+....+..|+. .|+.|+.+|+.|+.++.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33333334444444555555 56666666666665555
No 280
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=47.97 E-value=95 Score=21.80 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..++.......++|-+-|+..|..|..+...|..-|..+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888777755
No 281
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=47.49 E-value=57 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEE 39 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~ 39 (105)
..++..|..||..|..
T Consensus 101 ~~~i~~Lqeen~kl~~ 116 (193)
T PF14662_consen 101 VAEIETLQEENGKLLA 116 (193)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3344444444444333
No 282
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.49 E-value=74 Score=20.41 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
++..+|.+|..+...|+..|...+.|...--+
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666655544333
No 283
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=47.40 E-value=68 Score=21.48 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+..|...|+..-..|..++..++.++..+...+.
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666655555543
No 284
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=47.33 E-value=49 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=16.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
|.+++|.|.++-+||+|-..-+.++..|++
T Consensus 165 k~~emE~Qv~IL~lE~~L~~ar~~L~~lRk 194 (200)
T smart00307 165 KTQEMEQQVEILKLENELEAARKKLAEIRK 194 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 285
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.19 E-value=93 Score=23.57 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...|..++..|+.++..|+.++..|+.....
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544433
No 286
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=47.10 E-value=63 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
+++.+.+|..+-..|..+|+.|+.++..|...+...-.
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~ 41 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQT 41 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777777777777666665443
No 287
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=47.10 E-value=52 Score=29.55 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.++....++.|+.+|..|..+|..++.||..++.-
T Consensus 372 In~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 372 INNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556678889999999999999999999988875
No 288
>KOG0971|consensus
Probab=47.02 E-value=93 Score=30.39 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
-++|++.|..|.+.|+.+|+.|+.+++.||.-.-..
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367889999999999999999999999999877765
No 289
>PRK01203 prefoldin subunit alpha; Provisional
Probab=47.00 E-value=54 Score=24.08 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
.++..|-..|+++|+.|+.+++.|+........
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~ 35 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQ 35 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777644
No 290
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=46.95 E-value=76 Score=23.10 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=23.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+.+..-++.|+..|+..-..|+.+++.|+.+|.
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777776654
No 291
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=46.87 E-value=55 Score=21.94 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
..+-+++.++|...+.+|+.+|+.|+.
T Consensus 37 s~~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 37 SEEDEQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577889999999999999997764
No 292
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=46.63 E-value=44 Score=22.17 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
-|.+|++-...|+.+|+-|+.|+..
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666543
No 293
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.63 E-value=95 Score=21.41 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKIL--SRELSFLKNLFLAHA 59 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L--~kEl~~LK~ll~~h~ 59 (105)
+|.....+..++.....--..++.+|+.| .+++..|+-.+..-.
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555 555555555555444
No 294
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.57 E-value=36 Score=25.93 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.|-+.|+.+++-|+.|+.-||.=+
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888888888766
No 295
>PRK09039 hypothetical protein; Validated
Probab=46.53 E-value=62 Score=26.69 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
.|..|.++.+.|+.++..|..+|
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 296
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=46.41 E-value=89 Score=25.51 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...++...+..|++|...|.+++..|.+|...|..-+.+
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666665555555555544443
No 297
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.14 E-value=74 Score=28.17 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
..+.+.++.+|+++-+.|+.+++.+.+....+...|.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk 107 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE 107 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3445556666666666666666655555555444444
No 298
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=46.07 E-value=1.2e+02 Score=25.06 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=31.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+.+.+.++.+..+|..+...++.++..+++++..|..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 14 EEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4577788888888999989999999999999988775
No 299
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=46.00 E-value=59 Score=23.69 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=33.7
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 6 LQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 6 N~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
-..+..||-+--.|.+|+..|+..||.--..|++.|...+.=
T Consensus 28 Edrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpV 69 (112)
T PF07439_consen 28 EDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPV 69 (112)
T ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccch
Confidence 345667888888899999999999999999999888776443
No 300
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=45.93 E-value=1.4e+02 Score=23.15 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=39.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 12 SRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 12 SR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
.-++-......|..++..|......+...|..+-.++..|-. .+..+.+.+|..+|++.
T Consensus 74 ~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~---------~~~~~~~~~l~~~l~ea 132 (264)
T PF06008_consen 74 KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE---------NGDQLPSEDLQRALAEA 132 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------ccCCCCHHHHHHHHHHH
Confidence 334556667778888888888888888888777777666544 23345666776766654
No 301
>KOG1962|consensus
Probab=45.89 E-value=59 Score=25.89 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy12101 34 NDMLEEKIKILSREL 48 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl 48 (105)
+++|+.+++.+.+|.
T Consensus 181 ~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHHHHHHcccHH
Confidence 333333333333333
No 302
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.66 E-value=33 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=23.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
.|.|+.-+-+-..+|+.||..|..+|..|+
T Consensus 88 ~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 88 YKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 456667777778899999999988887763
No 303
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=45.31 E-value=82 Score=29.60 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
-...++..+++.|.+|+..|+.+|+.|++++..+.
T Consensus 754 ~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~ 788 (900)
T PRK13902 754 VPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELL 788 (900)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999987655
No 304
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=45.30 E-value=19 Score=31.77 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.++|++||++|++++..|.+.+..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 6666666666666666655554443
No 305
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=45.23 E-value=1.2e+02 Score=22.02 Aligned_cols=37 Identities=30% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKI-KILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I-~~L~kEl~~LK~ll~ 56 (105)
.......+..|+..+..|+.+. ..++.|+.-|=-+|.
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~ 94 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLG 94 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3344444555555555555444 445555555444443
No 306
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=45.01 E-value=99 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
++......|.++-+.|..++..|...+..++..+.
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~ 37 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIE 37 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666655543
No 307
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=45.00 E-value=1.3e+02 Score=27.01 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKI 41 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I 41 (105)
+...|+.+|+.++..|..+.
T Consensus 217 e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 308
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=44.98 E-value=1.1e+02 Score=21.58 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 32 TENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.|...|+.+|..|...+..|+
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566788888888888877765
No 309
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=44.85 E-value=1.2e+02 Score=22.17 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
+-++|....+++......-+..++.++.++ ||+++.|+...
T Consensus 39 er~~~~~~~~~~~~er~~~l~~i~~~~~~~----------Git~eeL~~~~ 79 (134)
T PRK10328 39 ERREEEEQQQRELAERQEKINTWLELMKAD----------GINPEELLGNS 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHhhhh
Confidence 334444445555555555666677766653 57788887643
No 310
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=44.76 E-value=1.6e+02 Score=25.34 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy12101 42 KILSRELSFLKNLF 55 (105)
Q Consensus 42 ~~L~kEl~~LK~ll 55 (105)
..|+..+..|..++
T Consensus 210 ~~l~~~~~~l~~~l 223 (475)
T PF10359_consen 210 SSLKERIEFLENML 223 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 311
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=44.60 E-value=98 Score=24.37 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..++.+++.+...|...+..-..|...|+.-+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 312
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=44.59 E-value=1.1e+02 Score=21.53 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
|+++.+-.=--+...++|++=...|..+|+.-+++|+.|..-|
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3343333333344455555555555565665677766665543
No 313
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=44.52 E-value=1.4e+02 Score=23.41 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.|.-|+|-++=|-. ...+.+.|.+.+..|+.+++.-+..|+.|-++=.+
T Consensus 114 L~eEr~Ry~rLQqs--sD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQ 162 (179)
T PF13942_consen 114 LSEERARYQRLQQS--SDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQ 162 (179)
T ss_pred HHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45567777766654 44568999999999999999999999988776444
No 314
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=44.48 E-value=45 Score=28.82 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=26.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
|.|-+.+.++.=+..+++||.+|+.+++.+..|.
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4556667777888889999999999888887665
No 315
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=44.31 E-value=94 Score=20.69 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
++-.++.++-.+|+.+...|+.+|-.++.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777765543
No 316
>KOG0977|consensus
Probab=43.82 E-value=69 Score=28.79 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
..+...+..|..||..|+.+|..++++
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444555555555555555544443
No 317
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.45 E-value=78 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKIL-------SRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L-------~kEl~~LK~ll~~ 57 (105)
..+++.+..|-.|-..|++.+..| +-|++.||.-|..
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 445556666666666666666544 4445555555554
No 318
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.33 E-value=1.4e+02 Score=23.19 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
....++...+..+..|+..|..++..|..++..+|.-+..
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 3334555666777777777777777777777766655543
No 319
>KOG0483|consensus
Probab=43.26 E-value=40 Score=26.30 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHhHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 10 KRSRVKSRIKTQE---TMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 10 kRSR~KrKqk~~e---~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
||-|=|.|+-+.+ +....+.|..+|..|+.++..|..|+..++.
T Consensus 101 RRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 101 RRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred ccccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
No 320
>KOG3433|consensus
Probab=43.20 E-value=86 Score=24.92 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
++.++.|+.+..+.+++..+..-|.++-..|+.++..++
T Consensus 105 en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 105 ENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777777777777777776666553
No 321
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=42.82 E-value=45 Score=22.01 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhh
Q psy12101 45 SRELSFLKNLFLAH 58 (105)
Q Consensus 45 ~kEl~~LK~ll~~h 58 (105)
..-+..++.++..+
T Consensus 23 ~~~~~~i~~~~~~~ 36 (93)
T PF00816_consen 23 EEAIAEIRELMAEY 36 (93)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34466677777764
No 322
>KOG3215|consensus
Probab=42.37 E-value=1.6e+02 Score=23.76 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhcCCC
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKIL------SRELSFLKNLFLAHAGSTN 63 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L------~kEl~~LK~ll~~h~~~~~ 63 (105)
+...+|...+.+...+.+.|+.+|..+ ++|-..|..++..+++...
T Consensus 96 q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsE 147 (222)
T KOG3215|consen 96 QKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSE 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcch
Confidence 344555555666666666666665555 4477888888888877643
No 323
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=42.30 E-value=1.2e+02 Score=25.17 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 34 NDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
...|+.+++.+.+++..++.++..+..
T Consensus 275 ~~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 275 LKELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556777777788888888887776653
No 324
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=42.21 E-value=1.5e+02 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
++|+.+...|+++|++|..+....|
T Consensus 203 ~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 203 DELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 3444444444444444444444333
No 325
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=42.02 E-value=39 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 32 TENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.|.+.|..+|.+|..++..|.
T Consensus 109 ~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 109 KDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888775
No 326
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=42.01 E-value=1.1e+02 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.|...+++|+.+|..||.-|+.+++...+....-.
T Consensus 214 ~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 214 GKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777666655433
No 327
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=41.95 E-value=84 Score=27.65 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.+++.+...|.+.|.+|.+-+...++++..|+.-+.+-
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 41 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQL 41 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888899999999999999999999998887763
No 328
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=41.95 E-value=81 Score=22.10 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+.+|......|+.+++.|...+..|...+..+.
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~ 40 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELD 40 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555444
No 329
>KOG0982|consensus
Probab=41.93 E-value=97 Score=27.63 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..|+..|+.|| |..+|.+|..|+..||.++..-+
T Consensus 291 ~eReasle~En--lqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 291 KEREASLEKEN--LQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565555 56667777777777777665544
No 330
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=41.74 E-value=80 Score=26.59 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKIL---SRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L---~kEl~~LK~ll~~ 57 (105)
.-..+..+-++|.+||..|+.++..+ ..|+..|+.++..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~~ 99 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILSP 99 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566777778888888887776653 4666666666543
No 331
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.55 E-value=1.1e+02 Score=20.83 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.++..|.+.++..-..|..++..|++.+..+..-|
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666555444
No 332
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.44 E-value=1.3e+02 Score=21.65 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
++.++..|+.+-+.|..+|-.|..+++.++..
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666555555443
No 333
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.37 E-value=1.3e+02 Score=21.36 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..+.+...|+.++..+...+..++.|+..++..+-...
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666655543
No 334
>KOG4673|consensus
Probab=41.36 E-value=1.5e+02 Score=28.21 Aligned_cols=53 Identities=23% Similarity=0.199 Sum_probs=43.4
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 6 LQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 6 N~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+-+-+++=++.+.|+.+..+....+..|-+.|+.++..|..|+..+|....+.
T Consensus 713 ~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~ 765 (961)
T KOG4673|consen 713 QGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE 765 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888888888888888888888888888888776654
No 335
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.32 E-value=1.1e+02 Score=20.88 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..|+..|.+.-..|...+..+++++..+...+
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554443
No 336
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=41.29 E-value=71 Score=20.73 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDM----LEEKIKILSRELSFLK 52 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~----Lr~~I~~L~kEl~~LK 52 (105)
+....+.-+.+|.+|-.. |.++|+.|+++...|.
T Consensus 4 qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445566667777777554 4555555555554443
No 337
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=41.27 E-value=1.8e+02 Score=23.48 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.+...+..+...|..+.+.|+++|+.-+.+|..+
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555444444443
No 338
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.02 E-value=1.6e+02 Score=26.59 Aligned_cols=54 Identities=26% Similarity=0.212 Sum_probs=35.7
Q ss_pred hhhHHHHHhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 4 PYLQAVKRSRV--KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 4 RNN~AakRSR~--KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|..-|..=..+ .-+++..++...|..|..|....-.+|..|...|..|+.-+-.
T Consensus 13 rd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 13 RDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444433333 3367777777777888888888888888888887777765543
No 339
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=40.84 E-value=1.4e+02 Score=21.80 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
...|+|=+|.-.----+..|..+|...-..|+.-+..|+..++..|-.
T Consensus 22 ed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpV 69 (112)
T PF07439_consen 22 EDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPV 69 (112)
T ss_pred HHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccch
Confidence 445677777777777889999999999999999999999998888754
No 340
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=40.78 E-value=1.7e+02 Score=22.52 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
-..++.+...+-..|-.++.-+..|+.|+..||.--..
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777778888888888888888888765544
No 341
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=40.75 E-value=1.2e+02 Score=22.99 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTEN-DMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 23 ~~~Rv~~Le~EN-~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+..++..+..++ ......|.+|..|+..||.+|.
T Consensus 143 vM~~ai~~de~~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 143 VMRKAIELDEENSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HHHHHHhcchhhhHhHHHHHHHHHHHHHHHHHHHh
Confidence 344455554444 4677889999999999999885
No 342
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=40.26 E-value=1.6e+02 Score=25.80 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=36.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|-+.+...+..|..++..+-..|+-+++.|.+....||.++.+
T Consensus 449 ~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 449 EKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888999999999999999999999999888765
No 343
>KOG4673|consensus
Probab=40.22 E-value=63 Score=30.59 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=36.3
Q ss_pred hhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 5 YLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 5 NN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
|+-++---|+-.-||...++.+|.-+.+|-++|+.++..|++|+..
T Consensus 396 ~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 396 NESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444567778888889999999999999999999988888753
No 344
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=40.20 E-value=39 Score=21.89 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=30.4
Q ss_pred hhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 5 YLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 5 NN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
|..||.+||+.++--.+.+..|-..-..- -..+..|+.==..|+++
T Consensus 10 ~eeaV~~CkeRkr~~k~Av~~R~~lAaaH----~aY~~SLr~~g~aL~~F 55 (60)
T PF04783_consen 10 DEEAVSLCKERKRLMKQAVDARYALAAAH----AAYIQSLRNVGAALRQF 55 (60)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 67899999999999888888886654332 23444444444444443
No 345
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=40.19 E-value=96 Score=27.28 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+.++.++-..|.++++.|+.|++.|++.+..
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~ 125 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIER 125 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555554444444443
No 346
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=39.94 E-value=52 Score=29.32 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.++..|++||..|++++..|+.-|-+....
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~a 54 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPAA 54 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467788888888888888888887775544
No 347
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.86 E-value=1.3e+02 Score=28.50 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
.-.+.|...|+.|...|+.++.|...|..+|.....
T Consensus 448 k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~ 483 (861)
T PF15254_consen 448 KSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQ 483 (861)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888889999999999877543
No 348
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.78 E-value=1.2e+02 Score=20.48 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
...+..++..|++.-..|..++..|+.++..|
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666665543
No 349
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.70 E-value=1.2e+02 Score=20.51 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.....|+.....|+.+|+.|+.-++.|...+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777777766666666553
No 350
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.65 E-value=97 Score=26.00 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.++..++..|.++|..|+.++..++.....|
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L 53 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHL 53 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555554444444443
No 351
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=39.60 E-value=43 Score=24.19 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
-+..|+.+.+.|+.+|..|+.++.
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 84 EMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356888999999999999988763
No 352
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=39.58 E-value=85 Score=24.66 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.+......+-.+|..|+.+|..|.+++......
T Consensus 34 ~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 34 DVIDDYEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455666677777777777777777776664
No 353
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.44 E-value=1.1e+02 Score=19.91 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+.+..++.+|.+.-..|...|+.+..++..+.+..
T Consensus 17 ~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~ 51 (92)
T PF14712_consen 17 DRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVE 51 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888899999999999998888887777743
No 354
>KOG4809|consensus
Probab=39.40 E-value=41 Score=30.73 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=29.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+-.++.++.++++..++||..|..+|.+|+.++.
T Consensus 322 r~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~ 355 (654)
T KOG4809|consen 322 RERDERERLEEIESFRKENKDLKEKVNALQAELT 355 (654)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999987664
No 355
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=39.39 E-value=54 Score=22.24 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.++++.-..|+.|..+|++++..++++....+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 35566667777777777777777777765555
No 356
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.38 E-value=1.6e+02 Score=22.63 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+..++.|-...+.+|+.++.++..|.+...
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335666666666677777666666665543
No 357
>PRK01156 chromosome segregation protein; Provisional
Probab=39.26 E-value=1.7e+02 Score=26.53 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.++...+.+|.++-..|..++..+..++..|+..
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777776666654
No 358
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.22 E-value=1.2e+02 Score=20.72 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..|...|++.-+.|...+..+++++..+...+
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555554443
No 359
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=39.19 E-value=1.2e+02 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.++.|+.|...++.+|+.-+..|..|
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL 27 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQEL 27 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887666655443
No 360
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=39.15 E-value=1.3e+02 Score=24.90 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+--..-.+++.+-..|.++|...+..+..|...|..|..-.
T Consensus 104 k~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~ 145 (355)
T PF09766_consen 104 KRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAA 145 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333344556666677777777777777777777666655443
No 361
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=39.09 E-value=27 Score=22.06 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12101 34 NDMLEEKIKILSRELSF 50 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl~~ 50 (105)
..+|+.+|+.|+.|+..
T Consensus 4 ~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 4 KDQLKREIEQLRQELER 20 (68)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 34555555555555544
No 362
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.93 E-value=3.1e+02 Score=26.31 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 10 KRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 10 kRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
..-+++-.....++..+..+|+++...++.++..+..-+..|+.++..-
T Consensus 833 ~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 833 QELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444445555566666666777777777777777777666666666654
No 363
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.81 E-value=1e+02 Score=22.80 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~k 46 (105)
..|..+++.|+.+|+.|+.
T Consensus 76 ~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 364
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.58 E-value=69 Score=24.05 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=19.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
++...++..++..|+.+|..|..++..+.....
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~ 120 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKNLSDQSS 120 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 344455666677777777666655555444433
No 365
>KOG3436|consensus
Probab=38.44 E-value=63 Score=23.87 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=15.3
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTENDMLEE 39 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~ 39 (105)
++++-+.....+++.++.+|..|-..|+.
T Consensus 5 k~~eLr~~~ke~L~~ql~dLK~ELa~LRv 33 (123)
T KOG3436|consen 5 KARELRGKSKEQLLKQLDDLKVELAQLRV 33 (123)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555553
No 366
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.41 E-value=1.2e+02 Score=20.40 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|..+++.|+.+=++-.+.|-..|......++.++..+..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~ 47 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666555443
No 367
>KOG3684|consensus
Probab=38.40 E-value=1.2e+02 Score=26.98 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
++...+.+|..--+.|+.+|+.|+..++.|-+.+..-+
T Consensus 431 ~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~ 468 (489)
T KOG3684|consen 431 DMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLP 468 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45556666666677777777777777777777766654
No 368
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=38.38 E-value=1.8e+02 Score=22.25 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=41.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
|-|.+.+.+|..+..++.+.|+.+......-+..++.++..-.... ......+...+.+.
T Consensus 31 rwk~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~v~~~~~~~ 90 (177)
T PF03234_consen 31 RWKHQARHERREERKQEIEELKYERKINEKLLKRIQKLLSALDKEE---EADKQEVMESLNEP 90 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHhcc
Confidence 3455667777777888888999999999998999999888765542 22234444555544
No 369
>KOG4593|consensus
Probab=38.30 E-value=3.3e+02 Score=25.54 Aligned_cols=57 Identities=28% Similarity=0.335 Sum_probs=41.6
Q ss_pred hHHHHHhHHHHH---hhHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
Q psy12101 6 LQAVKRSRVKSR---IKTQETMERVNKLKTENDMLEE-----------------------------------KIKILSRE 47 (105)
Q Consensus 6 N~AakRSR~KrK---qk~~e~~~Rv~~Le~EN~~Lr~-----------------------------------~I~~L~kE 47 (105)
+.-....|..+. ++..+...+...|+.||.+|+. ++..|+.|
T Consensus 488 ~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE 567 (716)
T KOG4593|consen 488 EQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAE 567 (716)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHH
Confidence 334444555544 6777888899999999977664 45678899
Q ss_pred HHHHHHHHHhhhcCC
Q psy12101 48 LSFLKNLFLAHAGST 62 (105)
Q Consensus 48 l~~LK~ll~~h~~~~ 62 (105)
+..||.++.+..+.+
T Consensus 568 ~~~lk~~l~~le~~~ 582 (716)
T KOG4593|consen 568 LERLKERLTALEGDK 582 (716)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999988877664
No 370
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.13 E-value=79 Score=26.47 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
++.|--||--|+++|.+++.|...++.-+..|
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999999999988887766655544
No 371
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=38.13 E-value=1.1e+02 Score=20.46 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
|...+....+.|.++-..++.++..+...+..+
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777777776666554
No 372
>KOG4643|consensus
Probab=38.06 E-value=63 Score=31.56 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
...||.+|++.|..|.+.-+.|+.+|..|+.-
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrar 293 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRAR 293 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 37789999999999999999999988888753
No 373
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=38.00 E-value=91 Score=26.33 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
++..++.+|.++...|++++..+..++.
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 374
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=37.90 E-value=1e+02 Score=20.66 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
++...+-+--||-.||.++.+.++||+.
T Consensus 13 lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 13 LQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777888888888888888764
No 375
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.89 E-value=1.8e+02 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.++.++.+-+.++..|+.+|..|...+..|+.
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444
No 376
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.88 E-value=89 Score=22.83 Aligned_cols=34 Identities=35% Similarity=0.355 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..-..+|.-||..|..+|+.=..||..||.....
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999987654
No 377
>PRK14011 prefoldin subunit alpha; Provisional
Probab=37.84 E-value=1.2e+02 Score=22.44 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
+.++--+-..|.++|+.|+.++..|+.....+..+
T Consensus 5 lq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ 39 (144)
T PRK14011 5 LQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKS 39 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455678888999999999999888887655
No 378
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=37.49 E-value=39 Score=27.80 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
.++=++|+..|+.-..+|+.+|+.|..+
T Consensus 5 ~qEDEqKtR~LEesI~RLEkEIe~LE~~ 32 (278)
T PF03285_consen 5 MQEDEQKTRSLEESIHRLEKEIEALENG 32 (278)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455778888888888888888888665
No 379
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.36 E-value=51 Score=26.27 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 36 MLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.|+++|++|..|+..|+..|.++.
T Consensus 189 dlearv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 189 DLEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378888888888888888877654
No 380
>PRK09866 hypothetical protein; Provisional
Probab=37.34 E-value=1.5e+02 Score=27.74 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
-|+.|.+.....-.+.+-.|..-|..+.+.|+.+|..|...+..|...=
T Consensus 421 sa~~kl~~~a~~~~d~l~~r~~gl~~~~~~L~~~I~~~e~d~~~l~~~q 469 (741)
T PRK09866 421 SAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQVEESLQLLQLNQ 469 (741)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888999999999999999999999999999998887543
No 381
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=37.22 E-value=61 Score=27.16 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.|.+.+-++|..|++|+..|+.-|.
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 382
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.84 E-value=2.4e+02 Score=23.20 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.+-.+.+.++..|.........++..+..++..+...+..
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555555555555555444
No 383
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.79 E-value=1.4e+02 Score=20.41 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+...+..++..|++.-..|+.++..++..+.
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666666666666666544
No 384
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.72 E-value=1.5e+02 Score=20.85 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
++..|.+.++.+...|+.+.+.|++.+..+.
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555433
No 385
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=36.57 E-value=1.2e+02 Score=24.46 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGST 62 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~ 62 (105)
...+++..|.++-..|...|+.|+.++..-+..|-......
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 56789999999999999999999999999999998876653
No 386
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=36.50 E-value=1.3e+02 Score=28.25 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
...++..++..|.+|+..|+.++..|++++..+.
T Consensus 759 ~~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~ 792 (902)
T TIGR03683 759 PPEQLPETVKRFFEEWKEQRKEIERLKKKLAELK 792 (902)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999987664
No 387
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=36.19 E-value=98 Score=21.73 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.-+-..+.+|+.+|..|.. ||..+|..+
T Consensus 18 ~LlRRkl~ele~eN~~l~~-------EL~kyk~~~ 45 (96)
T PF11365_consen 18 ELLRRKLSELEDENKQLTE-------ELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhc
Confidence 3344556666666665555 555666654
No 388
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=36.14 E-value=1.8e+02 Score=21.53 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhh
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLA 77 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~ 77 (105)
...+.+...|+.++..|..|+..|+.-++++.+ |..-|++.|--
T Consensus 56 ~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRP------Ltk~dVeeLV~ 99 (126)
T PF07028_consen 56 ESQRSELKELKQELDVLSKELQALRKEYLERRP------LTKEDVEELVL 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCHHHHHHHHH
Confidence 344455788888888889999999988888764 44456555543
No 389
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.13 E-value=2.4e+02 Score=24.89 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..+.+.+...++++-..++.+++.+.+++..|+..|..
T Consensus 218 l~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 218 LKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555554
No 390
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=36.00 E-value=1.7e+02 Score=22.54 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=26.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
-..+...+..++.+.+.-.+..+..|..|..+++.|..-|...
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555556666666777777777776666643
No 391
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=35.79 E-value=1.3e+02 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+...+..++..|+.+...|+.++....+=-..|+.+|
T Consensus 19 e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~F 55 (236)
T PF12017_consen 19 ENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIF 55 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344555666666666666666644332223444443
No 392
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=35.76 E-value=1.3e+02 Score=20.54 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.....|+.....|..+|..|+.-...|..++
T Consensus 81 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 81 DLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777777777776666543
No 393
>KOG0250|consensus
Probab=35.75 E-value=1.1e+02 Score=29.91 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+++.+.+.|++|++.|+.++..|..|...++.-+..
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777766666666666655554443
No 394
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=35.70 E-value=96 Score=25.60 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+-.|+..|..|+..|..+|..|+.+|...+.--
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~ 249 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQSEG 249 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 447899999999999999999998886655433
No 395
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=35.65 E-value=1.1e+02 Score=20.33 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
...+..|...-..|+.+|..|+.-+..|..+
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 102 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIKTIDRT 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666666666676666666666543
No 396
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=35.46 E-value=93 Score=20.47 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 31 KTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~L 51 (105)
...-.+++.+|+.|...+..|
T Consensus 56 ~~~L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 56 KAVLARTREKLEALEARLAAL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433
No 397
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=35.43 E-value=50 Score=28.48 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..+++...|+.||.+|+.|+..|+..
T Consensus 39 ~~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 39 NDQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677888888888888888776
No 398
>KOG3436|consensus
Probab=35.18 E-value=70 Score=23.66 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.-+.|..++..|+.|+..||--=.+
T Consensus 13 ~ke~L~~ql~dLK~ELa~LRv~K~t 37 (123)
T KOG3436|consen 13 SKEQLLKQLDDLKVELAQLRVAKVT 37 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4478889999999999988864443
No 399
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=35.15 E-value=1.4e+02 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 31 KTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..|-..|+.||..|++.++.+|+.+..
T Consensus 77 ~~e~~~l~~qvs~l~~~~~~~r~~~~~ 103 (389)
T PF06216_consen 77 SNEWISLNDQVSHLQHQNSEQRQQIRE 103 (389)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544443
No 400
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=35.14 E-value=1.6e+02 Score=21.60 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..++-.++.+..|-.+|.++.....+-+++||+.|...-
T Consensus 50 k~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m 88 (162)
T PF05565_consen 50 KNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAM 88 (162)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888999999999887643
No 401
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=35.01 E-value=92 Score=20.99 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
+..++..|+++...|..+|..+..+
T Consensus 5 l~~~~~~L~~~~~~l~~~i~~~~~~ 29 (83)
T PF07061_consen 5 LEAEIQELKEQIEQLEKEISELEAE 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555544
No 402
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=34.90 E-value=13 Score=25.95 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+.++...|+..|..|+.|+..|+..+
T Consensus 10 ~laK~~~~LE~~l~~l~~el~~L~~~l 36 (118)
T PF08286_consen 10 RLAKELSDLESELESLQSELEELKEEL 36 (118)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 403
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.87 E-value=1.2e+02 Score=25.89 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.+..+++.++.+|+.+-..++.++..+...+.+|..+-.
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIRE 109 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677888888888888888888888888888877754
No 404
>KOG4360|consensus
Probab=34.86 E-value=36 Score=30.78 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
.-...++.+...+++||.+|+.++..|+.|-
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et 189 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTET 189 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Confidence 5577899999999999999999999998764
No 405
>KOG4253|consensus
Probab=34.69 E-value=1.2e+02 Score=23.65 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSRELSF 50 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~ 50 (105)
++|..+|++|.+|++.
T Consensus 73 aRlnRKi~kl~~ele~ 88 (175)
T KOG4253|consen 73 ARLNRKINKLDKELET 88 (175)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4688999999998854
No 406
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=34.53 E-value=76 Score=23.37 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=0.0
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
||||..+. .++.-|-.+|.+.+..|..-|..|...|
T Consensus 30 rc~Daqrl--eel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 30 RCLDAQRL--EELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HcccHHHH--HHHHcccHHHHHHHHHHHHHHHHHHHHH
No 407
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=34.50 E-value=1.1e+02 Score=20.48 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
..|.+.-+.|+++|+.|+.....|..+|
T Consensus 74 ~~l~~~~~~l~~~i~~l~~~~~~l~~~l 101 (102)
T cd04775 74 AILEERLQSLNREIQRLRQQQQVLAAIL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666666554
No 408
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.47 E-value=1.5e+02 Score=20.27 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+...+....+.|+++-..|+.++..+...+.
T Consensus 95 r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 95 KIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556555555555544
No 409
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.45 E-value=1.6e+02 Score=20.41 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
......|.+.-..|+.+++.|+.-+..|..++..
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 79 EKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666665543
No 410
>KOG0709|consensus
Probab=34.18 E-value=49 Score=29.27 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
...++++.+|.+|+.+|..|-+++..|+.-+..-..
T Consensus 286 aeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 286 AENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred cCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc
Confidence 346899999999999999999999888765544433
No 411
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=34.11 E-value=1.1e+02 Score=23.50 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
++-.+.-+++..+..|+++|..|+.+...++
T Consensus 186 ~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 186 ELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555566666666666555554443
No 412
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.02 E-value=1.2e+02 Score=27.79 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
...|+-++|+...+..|....-.|+.+|.+|++|++.|..-+
T Consensus 435 q~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 435 QSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777755555444455555555555555544433
No 413
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.01 E-value=1.7e+02 Score=20.61 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+-..|+.|...++.+|..|...+..|.+-|
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444
No 414
>KOG4687|consensus
Probab=33.97 E-value=3e+02 Score=23.60 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=44.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCch----hhHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDD----IDLESLLA 77 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~----~dl~~ll~ 77 (105)
..-..-+.+..+..+.|-+.|.++++.|+.-++.|+.-+---+.+++++.+.- .||.+++.
T Consensus 29 tdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~ 93 (389)
T KOG4687|consen 29 TDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIE 93 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHH
Confidence 33444566778888899999999999999999999987776666666666544 45544443
No 415
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=33.92 E-value=67 Score=24.35 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L 44 (105)
.+..|.++|..|+.+++.|
T Consensus 48 Q~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555
No 416
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=33.87 E-value=1.7e+02 Score=20.59 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhcc
Q psy12101 28 NKLKTENDMLEEKIKIL-SRELSFLKNLFLAHAGSTNGIDMDDIDLESLLADA 79 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L-~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~~ 79 (105)
.++..|.++|+.++.++ +++-+.+=.+.+. .+-..+++.+-+|..+|++.
T Consensus 5 s~I~~eIekLqe~lk~~e~keaERigr~AlK--aGL~eieI~d~eL~~~FeeI 55 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAETKEAERIGRIALK--AGLGEIEISDAELQAAFEEI 55 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccccccCCHHHHHHHHHHH
Confidence 45667777777777665 3455555554443 33445778888888888764
No 417
>PRK06798 fliD flagellar capping protein; Validated
Probab=33.86 E-value=1.7e+02 Score=24.96 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...+..++.+-+.|.++=.+|+..|.+|.....+|..||.+.
T Consensus 396 ~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~~~~ 437 (440)
T PRK06798 396 TDIDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAMTKQK 437 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445566677788888899999999999999999998764
No 418
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.74 E-value=1.3e+02 Score=19.37 Aligned_cols=39 Identities=26% Similarity=0.310 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+++..++..|..+-..+..++..|..++..+...+..-.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888887776665533
No 419
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=33.63 E-value=1.6e+02 Score=20.19 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLE-----------EKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr-----------~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
+=+..-.+|+..++.+|.+|--.|+ .+|..+++++..++.++.+....
T Consensus 4 elR~lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~ 62 (87)
T PRK00461 4 ELRKKSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELE 62 (87)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999999998 46888899999999999886644
No 420
>KOG3684|consensus
Probab=33.57 E-value=79 Score=28.17 Aligned_cols=43 Identities=33% Similarity=0.343 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
..+++..+-++|+...+.|+.+++.|+..+..|..++..-..+
T Consensus 435 ~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~~~~~~~~~ 477 (489)
T KOG3684|consen 435 LLQELHSRQEELEKQIDTLESKLEALTASLSSLPGLLAQPLRS 477 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcCcccc
Confidence 4567777888888888888888888888888888887764433
No 421
>KOG0239|consensus
Probab=33.47 E-value=1.9e+02 Score=26.41 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=25.0
Q ss_pred hhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 5 YLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 5 NN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
++.+...-++-.++|.+.++.++..|+++...|+.++..+.+++...
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~ 274 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEA 274 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455556666666666666666665555555554433
No 422
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=33.25 E-value=73 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 37 LEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 37 Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
|-.+|++|++|+..|+.-|..+..
T Consensus 76 LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 76 LLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
No 423
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=32.64 E-value=2.5e+02 Score=22.08 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.......+...+..+-..|+.++..++++++.+......-..+
T Consensus 129 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 129 VQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3335566677777777888888888888888877776654444
No 424
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=32.58 E-value=2.6e+02 Score=22.45 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
|.++|--+|.-..++.++|++|+.+|..
T Consensus 46 laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 46 LAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777788888888888888888766
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=32.57 E-value=1.3e+02 Score=26.44 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
..++++...|+.+|+.|.+++..|-..+.
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555566666666666666655553
No 426
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.53 E-value=2.2e+02 Score=21.70 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..+..|+.+-..++..|..|+..+..|+.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ 127 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQA 127 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.51 E-value=2.5e+02 Score=25.84 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHhHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 7 QAVKRSRVK----SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 7 ~AakRSR~K----rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.|++..|+. ...-..+++.|+..|..+-+....++..|+++...|+
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555543 2222456677777777776666666666666655553
No 428
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=32.43 E-value=2.1e+02 Score=21.22 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.++.-...+..+++.++.+++.+++++..|...+..
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777788888888888888888888888877664
No 429
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.42 E-value=1.6e+02 Score=26.48 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=39.4
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHhhhcC
Q psy12101 9 VKRSRVKSRIKTQETMERVNKLKTENDM--LEEKIKIL--SRELSFLKNLFLAHAGS 61 (105)
Q Consensus 9 akRSR~KrKqk~~e~~~Rv~~Le~EN~~--Lr~~I~~L--~kEl~~LK~ll~~h~~~ 61 (105)
+.-||+-=.+...+-+.|+..|++|.+- |++++.+. ++|...+.++-.+-..+
T Consensus 300 stes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~ 356 (518)
T PF10212_consen 300 STESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKG 356 (518)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568999999999999999999999886 66777764 56666655555544433
No 430
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=32.41 E-value=2.3e+02 Score=21.70 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy12101 22 ETMERVNKLKT 32 (105)
Q Consensus 22 e~~~Rv~~Le~ 32 (105)
+++.++.+|+.
T Consensus 135 ~Le~ki~el~~ 145 (190)
T PF05266_consen 135 ELEMKILELQR 145 (190)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 431
>KOG3650|consensus
Probab=32.40 E-value=97 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
|-+|..--+.|-++|+..+.|.-.||
T Consensus 65 VLELQnTLdDLSqRVdsVKEEnLKLr 90 (120)
T KOG3650|consen 65 VLELQNTLDDLSQRVDSVKEENLKLR 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444444445555555444444443
No 432
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.24 E-value=1.9e+02 Score=24.08 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+.+++++|+..|+.....+...+..+.+++..|.+-+..
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555555556666666555555543
No 433
>PF14854 LURAP: Leucine rich adaptor protein
Probab=32.02 E-value=57 Score=24.03 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12101 37 LEEKIKILSRELSFLKN 53 (105)
Q Consensus 37 Lr~~I~~L~kEl~~LK~ 53 (105)
|..+|..|++|+..||+
T Consensus 20 Ld~kl~~Lr~EM~~LRq 36 (121)
T PF14854_consen 20 LDAKLAFLRKEMAGLRQ 36 (121)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555544443
No 434
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.97 E-value=1.5e+02 Score=19.92 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
..++-..+..|+.|...|+.+|..|...
T Consensus 56 ~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555443
No 435
>PHA02047 phage lambda Rz1-like protein
Probab=31.90 E-value=1.5e+02 Score=21.26 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
+.-.-+.+++.|+..-+.++.++..+++.+..|..-
T Consensus 28 ~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 28 ALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557788889999999999999999998888776
No 436
>PRK09343 prefoldin subunit beta; Provisional
Probab=31.85 E-value=1.8e+02 Score=20.40 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
|..-+..++..|++.-..|+.++..++..+ +.++..+.
T Consensus 79 r~E~ie~~ik~lekq~~~l~~~l~e~q~~l---~~ll~~~~ 116 (121)
T PRK09343 79 RKELLELRSRTLEKQEKKLREKLKELQAKI---NEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcC
Confidence 334455777777777777777777777654 44454443
No 437
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=31.84 E-value=1.1e+02 Score=25.85 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+|--|..++..|+.+|..+++||..++.-|
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L 205 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDL 205 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777665443
No 438
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.71 E-value=2.8e+02 Score=22.43 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
....+.+|+.+-..|+.+|+.++.+...+..-+.+
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555544
No 439
>KOG1333|consensus
Probab=31.66 E-value=50 Score=26.77 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+--.|...+..+|+-|+.+|-.|..|+..++.-.....
T Consensus 180 ~e~ar~~~~~e~n~~lr~~~~~lq~e~~~~t~~~~~~~ 217 (241)
T KOG1333|consen 180 AECQRTNQVQEENEVLRQKLFALQAEIHRLKKEEQQPE 217 (241)
T ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHhhhcccCch
Confidence 33457778999999999999999999999988766544
No 440
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=31.60 E-value=1.3e+02 Score=27.88 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKT-ENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~-EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|-+.-+..|...|.+ |-..|+.+.+.|.+|+..|+.+|..
T Consensus 409 QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~ 449 (735)
T TIGR01062 409 QAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKS 449 (735)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444445555555544 5556666666666666666666544
No 441
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.57 E-value=1.2e+02 Score=20.01 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12101 38 EEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 38 r~~I~~L~kEl~~LK~ll~~ 57 (105)
+.+|+.|+.++...+.+|..
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 442
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=31.55 E-value=1.9e+02 Score=23.76 Aligned_cols=8 Identities=63% Similarity=0.792 Sum_probs=4.5
Q ss_pred HHHhhccC
Q psy12101 73 ESLLADAV 80 (105)
Q Consensus 73 ~~ll~~~~ 80 (105)
.+||+..+
T Consensus 247 ~all~t~v 254 (264)
T PF07246_consen 247 QALLATAV 254 (264)
T ss_pred HHHHHHHH
Confidence 45666553
No 443
>PRK10698 phage shock protein PspA; Provisional
Probab=31.48 E-value=2.3e+02 Score=21.98 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
...++..|+.+-......+..|+..+..|+.-|.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555555555555555555443
No 444
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=31.34 E-value=1.9e+02 Score=27.07 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
...++..++..|.+|+..|+.++..|++++..+.
T Consensus 720 ~~~~i~~~v~~l~~e~k~l~k~~~~l~~~l~~~~ 753 (851)
T TIGR00344 720 TPNELPKKIERFFEEWKALQKELESLKLKIADQK 753 (851)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999998887654
No 445
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=31.16 E-value=1.5e+02 Score=20.02 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.|+.++..|++++.++..++..+..
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~ 28 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEA 28 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444433
No 446
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.15 E-value=1e+02 Score=21.93 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHhhhcC
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKI-------L-SRELSFLKNLFLAHAGS 61 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~-------L-~kEl~~LK~ll~~h~~~ 61 (105)
...++..+++.+.|.+.-+.+|.. | .+=....+.++..-+.+
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~ 76 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKG 76 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666554 2 22223355555554444
No 447
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.14 E-value=3.1e+02 Score=22.99 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
..++.++..|+.++..+..++..|..++.
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 448
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.09 E-value=2.7e+02 Score=22.05 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
++.-+.+++.|....+..|..+..|+..||+-+...-..
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777777888888888888777766555
No 449
>PF15456 Uds1: Up-regulated During Septation
Probab=31.05 E-value=1.6e+02 Score=21.23 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
...|++|++|-..|..+|+.+++-+.....+-.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~Rd 53 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLALESKIRD 53 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888775444433
No 450
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.01 E-value=1.9e+02 Score=22.84 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...++..+...+..|.+|-.+|..|++.+..+...+-.
T Consensus 24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~ 61 (193)
T PF14662_consen 24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK 61 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777788888888888888887777655544
No 451
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=31.01 E-value=1.5e+02 Score=19.15 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=28.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLE------------EKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr------------~~I~~L~kEl~~LK~ll~~h 58 (105)
=+..-.+++..++.+|.+|--.|+ .+|...++++..++.++.+.
T Consensus 9 lr~ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek 64 (69)
T PRK14549 9 IREMSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQREK 64 (69)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777777776 25556667777776666654
No 452
>KOG0971|consensus
Probab=31.00 E-value=4.8e+02 Score=25.82 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=41.4
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+|.+--+|--+-...+..+-.++++--+.|...|.+|..|...||+-+..
T Consensus 1001 h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1001 HRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 345566666666667777778888899999999999999999999999855
No 453
>KOG4370|consensus
Probab=31.00 E-value=1.5e+02 Score=26.47 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+..-++|+..|..|+++|..+..++-.||.++....
T Consensus 419 q~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q 454 (514)
T KOG4370|consen 419 QRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQ 454 (514)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333447778888888899999999999999987644
No 454
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=30.99 E-value=1.8e+02 Score=25.57 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..-+++.+++..|.++...|+++++.|++++..|+-.
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3557788899999999999999999999998888764
No 455
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.98 E-value=2.3e+02 Score=21.18 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Q psy12101 8 AVKRSRVKSRIKTQETMERVNKLKTENDML-------EEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 8 AakRSR~KrKqk~~e~~~Rv~~Le~EN~~L-------r~~I~~L~kEl~~LK~ll~~h 58 (105)
++.+=+++--.+..++.+..-.-..|-.+| .++|..|.+|+..|+.-|.+.
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554444 356888888888888777654
No 456
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=30.96 E-value=1.3e+02 Score=26.83 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+..++..|..+|..|+.++..|+.++..|..-|..
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999988875
No 457
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.85 E-value=3.1e+02 Score=23.24 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
.++..++.+|.++-..|++++..+..++..
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666555
No 458
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=30.83 E-value=1.9e+02 Score=21.93 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll 55 (105)
..++.++..++.++..++.|+
T Consensus 74 ~~~~~~~~~~~~~~~r~~~L~ 94 (322)
T TIGR01730 74 AAAEAQLELAQRSFERAERLV 94 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 459
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=30.77 E-value=2.5e+02 Score=21.52 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
....++-..+..++++|+.++..+|..+....+.
T Consensus 37 ~q~~~q~~q~~~q~~ql~~Q~~q~k~~y~sltG~ 70 (220)
T TIGR02791 37 AQAIEQMAALKTQYEQLSEQIEQYKQQYGSLTGN 70 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344555667777777777777777777765543
No 460
>PRK09039 hypothetical protein; Validated
Probab=30.72 E-value=2e+02 Score=23.77 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 34 NDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...|+.+|+.|+..+..|...|...
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444443
No 461
>PF14282 FlxA: FlxA-like protein
Probab=30.69 E-value=1.6e+02 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12101 37 LEEKIKILSRELSFLKN 53 (105)
Q Consensus 37 Lr~~I~~L~kEl~~LK~ 53 (105)
|..+|..|..+|..|..
T Consensus 56 Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 56 LQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333433333333
No 462
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.64 E-value=1.3e+02 Score=26.14 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=8.5
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTEN 34 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN 34 (105)
+-....++++.+-+.+.++.
T Consensus 40 ~~~~~~e~l~~~rn~~sk~i 59 (429)
T COG0172 40 KLLRELEELQAERNELSKEI 59 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 463
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=30.59 E-value=91 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
++..++..+..|.++++.|+.+|..|
T Consensus 84 ~~~~~~~~l~~l~a~Le~l~~~L~~~ 109 (109)
T PF03955_consen 84 NLTALEDKLTALLAQLEALKQQLAEL 109 (109)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556667777777777777776543
No 464
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.57 E-value=2e+02 Score=22.57 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.+.+.+......|+++++..|..+-.||..+-+.+..-
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~ 158 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLANKLKEV 158 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999988888877765543
No 465
>KOG4807|consensus
Probab=30.19 E-value=3.8e+02 Score=24.11 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhh---HHHHhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDID---LESLLA 77 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~d---l~~ll~ 77 (105)
..-+..-.+|-..|..|..+ |-.|+..||.+|....++..+.--+|-| |+.||.
T Consensus 459 RqCQrEnQELnaHNQELnnR---LaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLR 515 (593)
T KOG4807|consen 459 RQCQRENQELNAHNQELNNR---LAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLR 515 (593)
T ss_pred HHHHHhhHHHHHHHHHHhhH---HHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHH
Confidence 33344444555555555554 4579999999998765553222223333 556654
No 466
>PF14182 YgaB: YgaB-like protein
Probab=30.19 E-value=1.8e+02 Score=19.91 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 31 KTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+.+-..++.+|...+++|..+..+|....
T Consensus 39 ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QT 67 (79)
T PF14182_consen 39 EAELHSIQEEISQMKKELKEIQRVFEKQT 67 (79)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999998754
No 467
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=29.95 E-value=2.3e+02 Score=23.41 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
++.++...+.|+.++..|+.+|.....+|..|
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45566667777777777777777777777654
No 468
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.90 E-value=4.4e+02 Score=26.48 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCC-CCCchhhHHHHhhc
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH--AGSTNG-IDMDDIDLESLLAD 78 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h--~~~~~~-~~~~~~dl~~ll~~ 78 (105)
++.++..|+.+...+...+..++.++..+...+... +...+| .+|.+-+|..++..
T Consensus 388 lEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~Len 446 (1486)
T PRK04863 388 AEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEE 446 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 334444444444444444444444444444444432 222333 56777777666553
No 469
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=29.76 E-value=1.5e+02 Score=18.73 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEE-----------KIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~-----------~I~~L~kEl~~LK~ll~~h~ 59 (105)
=+..-..++...+.+|++|--.|+. +|..+++.+..++.++.+..
T Consensus 6 lr~ls~~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~~i~~~rk~IARi~Tvl~er~ 61 (66)
T PRK00306 6 LRELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLRERE 61 (66)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777762 45666777777777776654
No 470
>KOG1319|consensus
Probab=29.70 E-value=2.3e+02 Score=22.85 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+|.++...-+.++.+|.+++..|+-+-
T Consensus 115 ~~L~~~k~kqe~e~s~L~k~vtAL~iIk 142 (229)
T KOG1319|consen 115 QFLHKEKKKQEEEVSTLRKDVTALKIIK 142 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777776443
No 471
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.67 E-value=2e+02 Score=20.20 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
.+.+.--+-...-+.|++.|..+++.+..++.
T Consensus 66 ~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~ 97 (108)
T PF06210_consen 66 LRAELDYQINLKAEQEIERLHRKLDALREKLG 97 (108)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 33333333344445555555555555554443
No 472
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=29.65 E-value=1.1e+02 Score=19.85 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 37 LEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 37 Lr~~I~~L~kEl~~LK~ll 55 (105)
|..+++.|+.++..|+.-+
T Consensus 70 l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 70 LEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5556666666666655543
No 473
>KOG4378|consensus
Probab=29.64 E-value=74 Score=29.11 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 32 TENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.||+.|.++|+.|++|...||.
T Consensus 650 ~eNe~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTLRC 671 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhhhc
Confidence 7999999999999999999985
No 474
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.43 E-value=1.9e+02 Score=19.72 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.....|.+....|+.+|..|+.....|..++...
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (116)
T cd04769 79 HLQQALEDKKQEIRAQITELQQLLARLDAFEASL 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677778888888888888887777776543
No 475
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=29.40 E-value=2.2e+02 Score=20.43 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTE--NDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~E--N~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.++++..++++ |..+...+..|..+|......+
T Consensus 79 ~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 79 AQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666644 8888888888888888777776
No 476
>KOG4643|consensus
Probab=29.37 E-value=4.1e+02 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.-+-.|+.+|+.|+.|++.|++=...
T Consensus 198 enll~lr~eLddleae~~klrqe~~e 223 (1195)
T KOG4643|consen 198 ENLLRLRNELDDLEAEISKLRQEIEE 223 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666654444
No 477
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.29 E-value=2.1e+02 Score=22.53 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=3.5
Q ss_pred CCCCCCC
Q psy12101 91 SRSNYNS 97 (105)
Q Consensus 91 ~~~~~~~ 97 (105)
--|++|.
T Consensus 166 FDP~~HE 172 (211)
T PRK14160 166 FDPNLHN 172 (211)
T ss_pred CChHHhc
Confidence 4445554
No 478
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.17 E-value=2.8e+02 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..++++.+.|..+...+..++..|+.-+..
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 479
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=28.93 E-value=50 Score=21.67 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12101 36 MLEEKIKILSRELSFLK 52 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK 52 (105)
.|-.+|+.|++|+..|+
T Consensus 67 ~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 67 DLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35556666666666655
No 480
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.87 E-value=2.1e+02 Score=20.02 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.+.-+++......|.++-..|..++..|...+..++..+..-
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888899999999999999988888888877543
No 481
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=28.65 E-value=2e+02 Score=19.72 Aligned_cols=17 Identities=24% Similarity=0.435 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIK 42 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~ 42 (105)
+...+..+++.|++++.
T Consensus 50 e~~~~~~el~~~~~e~~ 66 (125)
T PF14265_consen 50 ELEELEKELEELEAELA 66 (125)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 482
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=28.58 E-value=2.4e+02 Score=20.81 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
-+|.-...+...+..+..+...|+..+..|+.|...|-..+-
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555444444444443
No 483
>KOG2008|consensus
Probab=28.53 E-value=2.2e+02 Score=24.71 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=26.9
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
.++|.-|.+|||-=--.|+.= -.-.+.+.+-...|+++|.+-+.+
T Consensus 168 ek~n~~AIkKSrpYfE~k~~~-t~~le~qk~tv~~Leaev~~~K~~ 212 (426)
T KOG2008|consen 168 EKKNKRAIKKSRPYFELKAKY-TVQLEQQKKTVDDLEAEVTLAKGE 212 (426)
T ss_pred HHHhHHHHhhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467889999998654433332 223445555566666666655544
No 484
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=28.51 E-value=1.8e+02 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 33 ENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~L 51 (105)
....++.++..|++|+...
T Consensus 154 ~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 154 KREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555443
No 485
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.40 E-value=3.8e+02 Score=23.41 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
-+....+...++..-.++-..|+.+|..+++|+..+..-+.+-+..
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~ 88 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD 88 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334445555666666777788888888888888888777775543
No 486
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=28.35 E-value=1.1e+02 Score=21.68 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
|+.+-..++.+|+.+++|+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (204)
T cd01878 4 LETDRRLIRERIAKLRRELEKVKK 27 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 487
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.33 E-value=2.3e+02 Score=23.86 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=30.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+.-+.+...+++.-..|+.|++.++.++..|..|+..||..-.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv 65 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASV 65 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777778888888888888888887776543
No 488
>KOG0946|consensus
Probab=28.32 E-value=1.7e+02 Score=28.21 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
..+++...+|+.||+.|..+|..+-.+.+.|++-+.
T Consensus 674 e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 674 ENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=28.11 E-value=2.7e+02 Score=21.16 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
..+|..||..|+.-++..+.-+..
T Consensus 72 i~~Lq~EN~eL~~~leEhq~alel 95 (181)
T PF05769_consen 72 IRQLQQENRELRQSLEEHQSALEL 95 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655544443
No 490
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=28.08 E-value=3.4e+02 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
|...+++.+..++.||...++++..++.+
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 45566666667777777777777766665
No 491
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.06 E-value=1.3e+02 Score=25.02 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
.++++|-..|+.|.+.|+.+-+.+++|+.
T Consensus 7 ~eL~qrk~~Lq~eIe~LerR~~ri~~Emr 35 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLERRRERIEKEMR 35 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666653
No 492
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=27.98 E-value=2.8e+02 Score=21.35 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12101 41 IKILSRELSFLKNLFL 56 (105)
Q Consensus 41 I~~L~kEl~~LK~ll~ 56 (105)
.+.+++++..|+.-+.
T Consensus 155 ~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 155 REELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 493
>KOG0979|consensus
Probab=27.86 E-value=4.7e+02 Score=25.73 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=35.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
=.+.+++..++.++..+|..|+.+-...++++...+.+|.+-
T Consensus 310 ~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 310 FEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDA 351 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888999999999999999999999998888888763
No 494
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=27.84 E-value=2.2e+02 Score=19.93 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...|.+....|+++|..|+.-...|..++...
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (133)
T cd04787 81 RRLIEQRLAETERRIKELLKLRDRMQQAVSQW 112 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777776666666665543
No 495
>KOG3478|consensus
Probab=27.57 E-value=2.5e+02 Score=20.64 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGID 66 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~ 66 (105)
...|.++...|..+++.+|..+.+|....|+-+......+..+.
T Consensus 74 V~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~ 117 (120)
T KOG3478|consen 74 VGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAA 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 496
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.45 E-value=2.2e+02 Score=19.98 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
++-.+....+..|+.+...++.+|..|+.++...+.-|.....+
T Consensus 52 ~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 52 VKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.40 E-value=2.9e+02 Score=23.22 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCchh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS-TNGIDMDDI 70 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~-~~~~~~~~~ 70 (105)
..+.+-.+++.+..++..-...+..++..++.||+..|.-+-....+ .+|.++.-|
T Consensus 277 ~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~I 333 (359)
T PF10498_consen 277 SAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKI 333 (359)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
No 498
>KOG0946|consensus
Probab=27.40 E-value=1.9e+02 Score=27.80 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
||...+++...++|+.|-..+-.+..+|+++++-||.-|
T Consensus 677 kQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 677 KQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=27.35 E-value=2.1e+02 Score=19.66 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+....++.++..++.+|..|..+-..|-.|+..|..
T Consensus 10 ~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~ 45 (106)
T PF05837_consen 10 QESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAE 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG4119|consensus
Probab=27.24 E-value=1.1e+02 Score=20.50 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++.+++..|++|+.|+..=|..+..
T Consensus 8 ~~~q~k~~VeqLk~e~~~~R~~vS~ 32 (71)
T KOG4119|consen 8 KKPQMKKEVEQLKLEANIERIKVSK 32 (71)
T ss_pred chHHHHHHHHHHHHHHHhhHhhHHH
Done!