Query psy12101
Match_columns 105
No_of_seqs 115 out of 223
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:48:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gu4_A CAAT/enhancer binding p 99.8 1.1E-20 3.7E-25 126.5 6.1 58 2-59 20-77 (78)
2 1hjb_A Ccaat/enhancer binding 99.8 4.9E-20 1.7E-24 125.6 8.0 60 2-61 20-79 (87)
3 1t2k_D Cyclic-AMP-dependent tr 99.6 8.5E-16 2.9E-20 97.0 7.1 57 1-57 5-61 (61)
4 2wt7_A Proto-oncogene protein 99.6 1.3E-15 4.4E-20 97.1 7.6 58 1-58 6-63 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.6 6.1E-16 2.1E-20 98.1 5.7 57 2-58 6-62 (62)
6 1ci6_A Transcription factor AT 99.6 2.4E-15 8.4E-20 96.2 8.4 56 2-57 7-62 (63)
7 2dgc_A Protein (GCN4); basic d 99.2 1.9E-11 6.5E-16 78.3 5.8 48 2-49 14-61 (63)
8 1dh3_A Transcription factor CR 98.8 4E-09 1.4E-13 65.8 5.1 46 3-48 7-52 (55)
9 1gd2_E Transcription factor PA 98.0 8.2E-06 2.8E-10 53.3 5.5 51 3-53 14-64 (70)
10 2oqq_A Transcription factor HY 97.6 0.00025 8.7E-09 42.6 6.0 37 20-56 5-41 (42)
11 2wt7_B Transcription factor MA 97.6 0.00059 2E-08 46.5 8.6 54 4-57 34-87 (90)
12 3a5t_A Transcription factor MA 97.0 1.7E-05 5.7E-10 55.6 -4.1 49 3-51 43-91 (107)
13 2c9l_Y EB1, zebra, BZLF1 trans 96.7 0.0053 1.8E-07 39.2 6.1 38 2-39 6-43 (63)
14 2yy0_A C-MYC-binding protein; 96.1 0.011 3.6E-07 36.4 4.8 34 25-58 19-52 (53)
15 2oxj_A Hybrid alpha/beta pepti 95.1 0.043 1.5E-06 31.5 4.6 27 19-45 2-28 (34)
16 3ra3_A P1C; coiled coil domain 95.1 0.025 8.7E-07 30.8 3.4 26 28-53 3-28 (28)
17 1kd8_A GABH AIV, GCN4 acid bas 95.1 0.04 1.4E-06 32.0 4.3 30 19-48 2-31 (36)
18 1kd8_B GABH BLL, GCN4 acid bas 95.0 0.089 3.1E-06 30.5 5.6 28 19-46 2-29 (36)
19 3m48_A General control protein 94.9 0.033 1.1E-06 31.8 3.7 24 21-44 3-26 (33)
20 3c3f_A Alpha/beta peptide with 94.4 0.085 2.9E-06 30.2 4.6 27 19-45 2-28 (34)
21 3m48_A General control protein 94.0 0.057 1.9E-06 30.8 3.2 32 26-57 1-32 (33)
22 2hy6_A General control protein 93.9 0.085 2.9E-06 30.3 3.9 29 18-46 1-29 (34)
23 3c3g_A Alpha/beta peptide with 93.6 0.15 5.2E-06 29.0 4.6 26 20-45 2-27 (33)
24 1kd8_A GABH AIV, GCN4 acid bas 93.6 0.089 3E-06 30.5 3.6 33 25-57 1-33 (36)
25 4dzn_A Coiled-coil peptide CC- 93.6 0.18 6.2E-06 28.3 4.8 27 27-53 4-30 (33)
26 1kd8_B GABH BLL, GCN4 acid bas 93.2 0.17 5.9E-06 29.3 4.4 33 25-57 1-33 (36)
27 2bni_A General control protein 93.1 0.14 4.9E-06 29.3 3.9 27 19-45 2-28 (34)
28 2wq1_A General control protein 93.0 0.19 6.6E-06 28.6 4.4 25 21-45 3-27 (33)
29 3ra3_B P2F; coiled coil domain 93.0 0.12 4.2E-06 28.1 3.4 26 27-52 2-27 (28)
30 2wq1_A General control protein 93.0 0.22 7.6E-06 28.3 4.6 31 26-56 1-31 (33)
31 1a93_B MAX protein, coiled coi 92.9 0.15 5.2E-06 29.2 3.8 28 17-44 6-33 (34)
32 1uo4_A General control protein 92.5 0.19 6.4E-06 28.8 3.9 30 20-56 3-32 (34)
33 3c3f_A Alpha/beta peptide with 92.3 0.28 9.4E-06 28.1 4.4 33 25-57 1-33 (34)
34 2oxj_A Hybrid alpha/beta pepti 92.2 0.28 9.6E-06 28.1 4.4 33 25-57 1-33 (34)
35 1uo4_A General control protein 91.6 0.22 7.4E-06 28.5 3.4 18 36-53 5-22 (34)
36 2dgc_A Protein (GCN4); basic d 91.4 0.94 3.2E-05 28.2 6.6 36 21-56 26-61 (63)
37 2xdj_A Uncharacterized protein 91.3 0.83 2.8E-05 30.1 6.6 42 17-58 19-60 (83)
38 3nmd_A CGMP dependent protein 90.7 0.38 1.3E-05 31.5 4.4 35 21-55 36-70 (72)
39 1go4_E MAD1 (mitotic arrest de 90.5 0.68 2.3E-05 31.8 5.8 32 19-50 13-44 (100)
40 1nkp_B MAX protein, MYC proto- 90.4 0.63 2.2E-05 29.7 5.3 32 27-58 49-80 (83)
41 1fmh_A General control protein 90.3 0.62 2.1E-05 26.1 4.5 27 21-47 4-30 (33)
42 3c3g_A Alpha/beta peptide with 90.3 0.58 2E-05 26.6 4.4 32 26-57 1-32 (33)
43 3vmx_A Voltage-gated hydrogen 90.3 1 3.5E-05 27.4 5.8 35 25-59 4-45 (48)
44 1uii_A Geminin; human, DNA rep 90.2 1.6 5.4E-05 29.2 7.2 28 29-56 43-70 (83)
45 2r2v_A GCN4 leucine zipper; co 90.0 0.7 2.4E-05 26.4 4.6 27 19-45 2-28 (34)
46 3a2a_A Voltage-gated hydrogen 89.8 0.64 2.2E-05 29.3 4.7 35 25-59 11-52 (58)
47 1uii_A Geminin; human, DNA rep 89.7 1.3 4.4E-05 29.7 6.4 44 14-57 35-78 (83)
48 2jee_A YIIU; FTSZ, septum, coi 89.6 0.8 2.7E-05 30.5 5.3 34 23-56 25-65 (81)
49 3he5_A Synzip1; heterodimeric 89.5 1.5 5.1E-05 26.4 6.0 34 22-55 7-47 (49)
50 1nlw_A MAD protein, MAX dimeri 89.5 0.83 2.8E-05 29.6 5.3 29 21-49 50-78 (80)
51 4dzn_A Coiled-coil peptide CC- 89.5 0.45 1.5E-05 26.7 3.4 25 33-57 3-27 (33)
52 3q8t_A Beclin-1; autophagy, AT 89.2 2.8 9.7E-05 27.9 8.0 48 6-53 6-53 (96)
53 2hy6_A General control protein 89.2 0.73 2.5E-05 26.3 4.2 32 25-56 1-32 (34)
54 2wt7_A Proto-oncogene protein 89.1 2.6 9E-05 25.8 7.4 33 25-57 23-55 (63)
55 2bni_A General control protein 89.0 0.5 1.7E-05 27.0 3.4 33 25-57 1-33 (34)
56 1dh3_A Transcription factor CR 89.0 1.2 4E-05 27.1 5.4 31 25-55 22-52 (55)
57 2r2v_A GCN4 leucine zipper; co 88.9 0.86 3E-05 26.0 4.4 32 25-56 1-32 (34)
58 1dip_A Delta-sleep-inducing pe 88.7 2.1 7E-05 28.4 6.8 31 26-56 16-46 (78)
59 2oqq_A Transcription factor HY 88.4 0.73 2.5E-05 27.4 4.0 24 18-41 17-40 (42)
60 3s4r_A Vimentin; alpha-helix, 88.4 1.2 4.1E-05 29.6 5.6 23 24-46 22-44 (93)
61 1wlq_A Geminin; coiled-coil; 2 87.5 2.1 7E-05 28.7 6.3 28 29-56 35-62 (83)
62 1deb_A APC protein, adenomatou 87.4 2.6 8.9E-05 26.1 6.3 37 21-57 6-49 (54)
63 1t2k_D Cyclic-AMP-dependent tr 87.2 3.4 0.00012 25.0 7.4 33 25-57 22-54 (61)
64 3kin_B Kinesin heavy chain; mo 87.1 1.2 4.1E-05 30.5 5.2 32 21-52 85-116 (117)
65 3viq_A SWI5-dependent recombin 86.9 1.8 6.1E-05 30.3 6.0 43 28-76 3-45 (122)
66 1gk7_A Vimentin; intermediate 86.7 0.3 1E-05 28.2 1.6 22 23-44 18-39 (39)
67 2wvr_A Geminin; DNA replicatio 86.7 2.6 8.7E-05 32.5 7.2 32 24-55 114-145 (209)
68 3s9g_A Protein hexim1; cyclin 86.6 1.6 5.4E-05 30.3 5.5 19 21-39 40-58 (104)
69 1wlq_A Geminin; coiled-coil; 2 86.3 3.2 0.00011 27.7 6.7 44 14-57 27-70 (83)
70 3efg_A Protein SLYX homolog; x 86.1 3.4 0.00012 26.7 6.7 42 18-59 14-55 (78)
71 3mq7_A Bone marrow stromal ant 85.4 5.1 0.00018 28.4 7.8 33 24-56 70-102 (121)
72 2wg5_A General control protein 85.3 0.89 3.1E-05 30.8 3.7 31 24-54 6-36 (109)
73 1nkp_B MAX protein, MYC proto- 85.2 1.8 6.2E-05 27.5 5.0 32 20-51 49-80 (83)
74 3cve_A Homer protein homolog 1 84.3 2.7 9.3E-05 27.2 5.5 29 22-50 4-32 (72)
75 2wuj_A Septum site-determining 84.0 1 3.5E-05 27.4 3.2 26 22-47 31-56 (57)
76 1dip_A Delta-sleep-inducing pe 83.9 1.2 4.2E-05 29.5 3.7 20 33-52 16-35 (78)
77 2yy0_A C-MYC-binding protein; 83.4 1.6 5.4E-05 26.5 3.9 23 19-41 27-49 (53)
78 3m91_A Proteasome-associated A 83.1 5.8 0.0002 24.0 6.4 39 19-57 10-48 (51)
79 3o0z_A RHO-associated protein 83.0 8.1 0.00028 28.6 8.3 55 8-62 80-134 (168)
80 3oja_A Leucine-rich immune mol 82.7 4.6 0.00016 32.0 7.4 44 13-56 430-473 (487)
81 1hjb_A Ccaat/enhancer binding 82.6 5.5 0.00019 26.4 6.6 36 22-57 33-68 (87)
82 1jcd_A Major outer membrane li 82.2 3 0.0001 25.4 4.8 29 26-54 5-33 (52)
83 3oja_B Anopheles plasmodium-re 82.1 2.7 9.1E-05 33.9 5.9 8 72-79 574-581 (597)
84 1t6f_A Geminin; coiled-coil, c 81.7 2.2 7.5E-05 24.7 3.8 24 30-53 5-28 (37)
85 3hnw_A Uncharacterized protein 81.4 5.9 0.0002 27.9 6.8 20 29-48 107-126 (138)
86 1nlw_A MAD protein, MAX dimeri 81.3 3.2 0.00011 26.7 5.0 30 27-56 49-78 (80)
87 1ci6_A Transcription factor AT 81.3 4.3 0.00015 25.0 5.4 32 25-56 23-54 (63)
88 2wt7_B Transcription factor MA 81.3 4.2 0.00014 27.3 5.7 34 26-59 49-82 (90)
89 3ol1_A Vimentin; structural ge 81.2 8.4 0.00029 26.2 7.4 24 34-57 85-108 (119)
90 3v86_A De novo design helix; c 81.1 2.6 8.9E-05 22.6 3.7 23 29-51 4-26 (27)
91 1p9i_A Cortexillin I/GCN4 hybr 81.0 1.9 6.4E-05 23.8 3.2 21 26-46 7-27 (31)
92 1g6u_A Domain swapped dimer; d 81.0 2.9 0.0001 25.0 4.3 45 8-52 3-47 (48)
93 1gd2_E Transcription factor PA 80.9 6.8 0.00023 25.0 6.4 30 22-51 40-69 (70)
94 3cvf_A Homer-3, homer protein 80.1 2 6.8E-05 28.3 3.7 27 23-49 11-37 (79)
95 2zxx_A Geminin; coiled-coil, c 79.9 6.6 0.00023 25.9 6.2 25 29-53 31-55 (79)
96 4etp_A Kinesin-like protein KA 79.4 3.5 0.00012 33.4 5.7 37 21-57 6-42 (403)
97 3m9b_A Proteasome-associated A 79.4 2.9 0.0001 32.8 5.0 40 19-58 55-94 (251)
98 1nkp_A C-MYC, MYC proto-oncoge 79.4 5.5 0.00019 25.9 5.7 30 27-56 54-83 (88)
99 1wt6_A Myotonin-protein kinase 79.2 8 0.00027 25.7 6.5 33 20-52 40-72 (81)
100 1ic2_A Tropomyosin alpha chain 79.2 9.8 0.00033 24.1 7.2 40 18-57 27-66 (81)
101 2zxx_A Geminin; coiled-coil, c 78.9 6.3 0.00022 26.0 5.8 43 15-57 24-66 (79)
102 3hnw_A Uncharacterized protein 78.9 7.4 0.00025 27.4 6.6 23 31-53 95-117 (138)
103 4dzo_A Mitotic spindle assembl 78.5 3 0.0001 29.0 4.4 28 32-59 4-31 (123)
104 3oja_B Anopheles plasmodium-re 78.3 11 0.00037 30.3 8.2 35 23-57 542-576 (597)
105 2wvr_A Geminin; DNA replicatio 78.0 6.3 0.00022 30.3 6.4 27 19-45 116-142 (209)
106 1zxa_A CGMP-dependent protein 78.0 3.4 0.00012 26.5 4.2 34 23-56 23-56 (67)
107 3s4r_A Vimentin; alpha-helix, 77.8 5.1 0.00018 26.5 5.3 34 20-53 58-91 (93)
108 2j5u_A MREC protein; bacterial 77.6 1 3.5E-05 34.3 2.0 30 28-57 29-61 (255)
109 1bb1_B Designed, thermostable 77.5 7.6 0.00026 22.0 5.4 32 26-57 3-34 (36)
110 2zvf_A Alanyl-tRNA synthetase; 77.2 3.7 0.00013 28.4 4.6 33 20-52 27-59 (171)
111 2zqm_A Prefoldin beta subunit 77.1 9.6 0.00033 24.7 6.4 40 20-59 72-111 (117)
112 2xdj_A Uncharacterized protein 76.5 7.4 0.00025 25.5 5.7 27 33-59 21-47 (83)
113 2v71_A Nuclear distribution pr 76.4 12 0.00041 28.0 7.5 46 13-58 37-82 (189)
114 1fxk_A Prefoldin; archaeal pro 76.3 10 0.00036 24.2 6.4 38 20-57 67-104 (107)
115 3he4_A Synzip6; heterodimeric 76.0 11 0.00036 23.2 5.8 42 12-53 10-52 (56)
116 1nkp_A C-MYC, MYC proto-oncoge 75.2 7.6 0.00026 25.2 5.5 34 19-52 53-86 (88)
117 2jee_A YIIU; FTSZ, septum, coi 74.5 15 0.00051 24.2 6.7 20 37-56 53-72 (81)
118 2pnv_A Small conductance calci 74.5 8.7 0.0003 22.5 5.0 31 27-57 11-41 (43)
119 3swk_A Vimentin; cytoskeleton, 74.4 4 0.00014 26.6 4.0 25 29-53 60-84 (86)
120 1jnm_A Proto-oncogene C-JUN; B 74.1 12 0.00041 22.6 7.6 35 23-57 20-54 (62)
121 2pnv_A Small conductance calci 74.0 4.5 0.00015 23.8 3.7 31 21-51 12-42 (43)
122 3mq9_A Bone marrow stromal ant 72.7 12 0.00041 29.4 7.1 28 25-52 443-470 (471)
123 3qh9_A Liprin-beta-2; coiled-c 72.3 16 0.00053 24.3 6.4 42 18-59 26-67 (81)
124 3u1c_A Tropomyosin alpha-1 cha 72.1 18 0.00063 23.9 8.3 40 18-57 30-69 (101)
125 3swk_A Vimentin; cytoskeleton, 71.9 13 0.00045 24.1 6.0 37 21-57 3-39 (86)
126 3m9b_A Proteasome-associated A 71.2 5 0.00017 31.4 4.4 35 19-53 62-96 (251)
127 1am9_A Srebp-1A, protein (ster 71.0 6.5 0.00022 25.1 4.3 21 29-49 54-74 (82)
128 2w83_C C-JUN-amino-terminal ki 70.1 13 0.00046 24.4 5.7 37 21-57 33-69 (77)
129 3m91_A Proteasome-associated A 70.1 15 0.00052 22.1 5.8 35 17-51 15-49 (51)
130 2xzr_A Immunoglobulin-binding 69.9 17 0.0006 25.2 6.5 40 20-59 71-110 (114)
131 4emc_A Monopolin complex subun 69.8 8.7 0.0003 29.1 5.3 34 24-57 19-52 (190)
132 1lwu_C Fibrinogen gamma chain; 69.2 18 0.00063 28.8 7.4 38 23-60 17-54 (323)
133 3w03_C DNA repair protein XRCC 67.8 10 0.00035 28.3 5.3 29 26-54 146-174 (184)
134 2j5u_A MREC protein; bacterial 66.9 2 6.8E-05 32.7 1.3 31 27-57 21-51 (255)
135 1deb_A APC protein, adenomatou 65.9 8.8 0.0003 23.7 3.9 23 35-57 6-28 (54)
136 3u59_A Tropomyosin beta chain; 65.8 25 0.00086 23.0 7.2 36 21-56 33-68 (101)
137 1am9_A Srebp-1A, protein (ster 65.7 8.6 0.0003 24.5 4.0 22 36-57 54-75 (82)
138 3vmx_A Voltage-gated hydrogen 65.6 19 0.00064 21.8 5.2 33 15-47 8-40 (48)
139 3ra3_B P2F; coiled coil domain 65.4 6.3 0.00022 21.2 2.8 23 23-45 5-27 (28)
140 1fmh_A General control protein 65.3 15 0.00053 20.3 4.6 27 26-52 2-28 (33)
141 2ve7_A Kinetochore protein HEC 65.1 5.8 0.0002 31.0 3.7 30 24-53 184-213 (315)
142 3ol1_A Vimentin; structural ge 64.9 20 0.00069 24.3 6.0 38 20-57 22-59 (119)
143 1joc_A EEA1, early endosomal a 64.8 22 0.00076 24.2 6.3 34 21-54 7-40 (125)
144 2dfs_A Myosin-5A; myosin-V, in 64.6 15 0.0005 33.4 6.6 31 21-51 1019-1049(1080)
145 3gpv_A Transcriptional regulat 63.9 19 0.00064 24.8 5.8 36 24-59 94-129 (148)
146 3u06_A Protein claret segregat 62.8 18 0.0006 29.4 6.3 42 18-59 17-58 (412)
147 2w6a_A ARF GTPase-activating p 61.4 28 0.00096 22.0 7.2 37 16-52 25-61 (63)
148 4ath_A MITF, microphthalmia-as 60.7 27 0.00091 23.1 5.8 34 15-48 46-79 (83)
149 1a93_B MAX protein, coiled coi 60.4 18 0.00062 20.4 4.2 26 30-55 5-30 (34)
150 4dyl_A Tyrosine-protein kinase 60.1 53 0.0018 26.0 8.5 42 20-61 304-345 (406)
151 1s1c_X RHO-associated, coiled- 59.3 27 0.00093 22.4 5.5 31 22-52 3-33 (71)
152 3he5_B Synzip2; heterodimeric 59.3 27 0.00091 21.1 6.1 28 30-57 22-49 (52)
153 1ytz_T Troponin T; muscle, THI 58.6 40 0.0014 22.9 6.8 42 17-58 48-89 (107)
154 3he5_A Synzip1; heterodimeric 58.5 27 0.00091 20.8 5.0 29 27-55 5-33 (49)
155 1ik9_A DNA repair protein XRCC 58.3 20 0.0007 26.8 5.5 28 22-49 136-163 (213)
156 1zme_C Proline utilization tra 57.9 14 0.00048 21.7 3.8 12 40-51 52-63 (70)
157 1rtm_1 Mannose-binding protein 57.6 18 0.00061 23.8 4.6 25 30-54 2-26 (149)
158 1j1d_C Troponin I, TNI; THIN f 57.4 38 0.0013 24.0 6.5 47 15-61 62-108 (133)
159 1j1d_B Troponin T, TNT; THIN f 56.8 43 0.0015 22.8 6.7 44 15-58 46-89 (106)
160 3mud_A DNA repair protein XRCC 56.8 26 0.00088 26.0 5.7 36 22-57 132-167 (175)
161 2oa5_A Hypothetical protein BQ 56.4 6.6 0.00023 27.4 2.3 23 35-57 11-33 (110)
162 4emc_A Monopolin complex subun 56.0 28 0.00094 26.3 5.8 36 20-55 22-57 (190)
163 3oja_A Leucine-rich immune mol 55.8 65 0.0022 25.3 8.3 48 11-58 414-461 (487)
164 3mq7_A Bone marrow stromal ant 55.8 51 0.0017 23.3 8.2 39 19-57 72-110 (121)
165 3trt_A Vimentin; cytoskeleton, 55.7 25 0.00086 21.6 4.8 23 30-52 54-76 (77)
166 3azd_A Short alpha-tropomyosin 55.0 5.3 0.00018 22.5 1.4 27 22-48 8-34 (37)
167 1hlo_A Protein (transcription 54.6 11 0.00039 23.6 3.1 21 27-47 59-79 (80)
168 3w03_C DNA repair protein XRCC 53.9 31 0.0011 25.6 5.8 29 20-48 154-182 (184)
169 3viq_B Mating-type switching p 53.7 24 0.00082 23.4 4.6 26 21-46 4-29 (85)
170 2ocy_A RAB guanine nucleotide 53.6 33 0.0011 24.9 5.8 38 20-57 110-147 (154)
171 1t6f_A Geminin; coiled-coil, c 53.5 30 0.001 19.9 4.6 29 26-54 8-36 (37)
172 3kqg_A Langerin, C-type lectin 53.4 15 0.0005 24.9 3.7 23 35-57 19-41 (182)
173 1gu4_A CAAT/enhancer binding p 53.4 42 0.0014 21.6 7.6 37 21-57 32-68 (78)
174 2jn6_A Protein CGL2762, transp 52.5 0.44 1.5E-05 30.1 -4.0 30 29-58 63-92 (97)
175 3viq_B Mating-type switching p 52.3 15 0.00051 24.4 3.5 27 28-54 4-30 (85)
176 1uix_A RHO-associated kinase; 51.9 39 0.0013 21.7 5.3 29 24-52 3-31 (71)
177 1g6u_A Domain swapped dimer; d 51.5 31 0.001 20.5 4.4 26 32-57 20-45 (48)
178 2p22_A Suppressor protein STP2 51.3 28 0.00097 25.6 5.2 36 20-55 58-93 (174)
179 1fxk_C Protein (prefoldin); ar 51.1 44 0.0015 22.2 5.8 30 20-49 97-126 (133)
180 1ykh_B RNA polymerase II holoe 51.1 55 0.0019 22.6 6.4 34 20-53 87-120 (132)
181 2dfs_A Myosin-5A; myosin-V, in 51.0 43 0.0015 30.4 7.3 29 25-53 984-1012(1080)
182 2ve7_C Kinetochore protein NUF 51.0 4.5 0.00015 30.9 0.8 25 23-47 153-177 (250)
183 3u06_A Protein claret segregat 51.0 61 0.0021 26.2 7.6 37 21-57 6-42 (412)
184 3q0x_A Centriole protein; cent 50.9 80 0.0027 24.1 8.5 42 17-58 177-218 (228)
185 2ve7_C Kinetochore protein NUF 50.8 11 0.00039 28.6 3.1 46 11-56 134-179 (250)
186 1l8d_A DNA double-strand break 50.7 47 0.0016 21.3 7.0 37 20-56 66-102 (112)
187 2p22_A Suppressor protein STP2 50.3 72 0.0025 23.4 7.8 37 17-53 48-84 (174)
188 1go4_E MAD1 (mitotic arrest de 50.1 45 0.0015 22.6 5.7 36 23-58 10-45 (100)
189 1jcd_A Major outer membrane li 49.7 40 0.0014 20.3 5.9 34 19-52 5-38 (52)
190 2lw1_A ABC transporter ATP-bin 49.5 29 0.00098 22.1 4.5 26 32-57 22-47 (89)
191 1yke_B RNA polymerase II holoe 49.4 57 0.0019 23.2 6.4 43 20-62 87-133 (151)
192 1m1j_C Fibrinogen gamma chain; 48.3 1.1E+02 0.0037 25.1 8.7 57 6-63 80-136 (409)
193 3s9g_A Protein hexim1; cyclin 48.3 61 0.0021 22.3 6.1 29 24-52 64-92 (104)
194 3rvy_A ION transport protein; 47.6 3.9 0.00013 30.2 0.0 21 35-55 259-279 (285)
195 3nr7_A DNA-binding protein H-N 47.3 57 0.0019 21.3 5.8 40 29-78 42-81 (86)
196 2er8_A Regulatory protein Leu3 47.2 10 0.00035 22.6 1.9 20 25-44 49-68 (72)
197 1ses_A Seryl-tRNA synthetase; 47.2 28 0.00097 28.1 5.0 24 30-53 69-92 (421)
198 2lw1_A ABC transporter ATP-bin 46.2 39 0.0013 21.5 4.7 23 26-48 23-45 (89)
199 1fmh_B General control protein 46.2 37 0.0013 18.8 4.3 26 21-46 4-29 (33)
200 2w6a_A ARF GTPase-activating p 44.8 57 0.002 20.6 5.2 31 23-53 25-55 (63)
201 2yf2_A C4B binding protein; im 44.7 38 0.0013 21.3 4.3 27 33-59 35-61 (65)
202 4b4t_K 26S protease regulatory 44.5 60 0.0021 26.3 6.6 36 22-57 53-88 (428)
203 2aze_A Transcription factor DP 44.1 59 0.002 23.7 5.9 28 24-51 4-31 (155)
204 2ocy_A RAB guanine nucleotide 43.2 83 0.0029 22.7 6.5 23 34-56 110-132 (154)
205 1wle_A Seryl-tRNA synthetase; 42.0 96 0.0033 25.8 7.6 25 29-53 120-144 (501)
206 3rvy_A ION transport protein; 41.9 5.4 0.00019 29.4 0.0 28 23-50 254-281 (285)
207 4h22_A Leucine-rich repeat fli 41.6 82 0.0028 21.5 6.0 27 31-57 57-83 (103)
208 3i00_A HIP-I, huntingtin-inter 41.6 84 0.0029 21.6 6.6 41 16-56 38-78 (120)
209 3he5_B Synzip2; heterodimeric 41.5 56 0.0019 19.6 6.2 32 24-55 9-40 (52)
210 4gkw_A Spindle assembly abnorm 41.4 74 0.0025 23.2 6.0 34 22-55 43-76 (167)
211 2wg5_A General control protein 41.3 30 0.001 23.1 3.7 25 35-59 10-34 (109)
212 3gp4_A Transcriptional regulat 41.3 75 0.0026 21.6 5.9 36 24-59 80-115 (142)
213 2v66_B Nuclear distribution pr 41.1 85 0.0029 21.5 6.4 19 21-39 6-24 (111)
214 3ljm_A Coil Ser L9C; de novo d 41.1 44 0.0015 18.2 4.1 24 28-51 4-27 (31)
215 3gpv_A Transcriptional regulat 41.0 49 0.0017 22.6 4.9 40 19-58 96-135 (148)
216 3cve_A Homer protein homolog 1 41.0 69 0.0024 20.5 7.3 43 16-58 12-54 (72)
217 1buu_A Protein (mannose-bindin 41.0 39 0.0013 22.8 4.3 24 31-54 22-45 (168)
218 3bbp_D GRIP and coiled-coil do 40.8 45 0.0016 21.6 4.3 30 23-52 34-63 (71)
219 3cvf_A Homer-3, homer protein 40.8 73 0.0025 20.7 7.3 44 16-59 18-61 (79)
220 1q08_A Zn(II)-responsive regul 40.4 64 0.0022 19.9 6.0 37 24-60 38-74 (99)
221 1t3j_A Mitofusin 1; coiled coi 40.0 50 0.0017 22.3 4.6 25 28-52 50-74 (96)
222 1rtm_1 Mannose-binding protein 39.8 40 0.0014 22.0 4.1 25 23-47 2-26 (149)
223 2ve7_A Kinetochore protein HEC 39.7 50 0.0017 25.7 5.2 29 19-47 186-214 (315)
224 2dq0_A Seryl-tRNA synthetase; 39.2 63 0.0021 26.4 6.0 11 38-48 82-92 (455)
225 2wuj_A Septum site-determining 38.6 62 0.0021 19.2 4.6 32 22-53 24-55 (57)
226 3sjb_C Golgi to ER traffic pro 38.6 88 0.003 21.0 6.7 25 35-59 52-76 (93)
227 1fzc_C Fibrin; blood coagulati 38.5 17 0.00058 29.0 2.4 31 27-57 13-43 (319)
228 1yhn_B RILP, RAB interacting l 38.2 46 0.0016 21.2 3.9 31 27-57 5-35 (65)
229 1j1e_C Troponin I, TNI; THIN f 37.8 1.2E+02 0.004 22.5 6.8 47 15-61 62-108 (180)
230 3efg_A Protein SLYX homolog; x 37.8 68 0.0023 20.4 4.8 34 25-58 28-61 (78)
231 1l8d_A DNA double-strand break 37.3 80 0.0027 20.2 6.1 35 23-57 8-42 (112)
232 3q0x_A Centriole protein; cent 36.9 82 0.0028 24.0 5.9 37 22-58 168-204 (228)
233 2l5g_A GPS2 protein, G protein 36.8 61 0.0021 18.6 4.0 22 27-48 10-31 (38)
234 3plt_A Sphingolipid long chain 36.6 1.4E+02 0.0049 22.9 9.5 25 22-46 135-159 (234)
235 3u59_A Tropomyosin beta chain; 36.4 87 0.003 20.3 8.1 37 19-55 24-60 (101)
236 2oa5_A Hypothetical protein BQ 36.4 32 0.0011 23.9 3.3 24 19-42 9-32 (110)
237 2y7c_A Type-1 restriction enzy 36.4 1.1E+02 0.0037 22.9 6.5 40 22-61 380-419 (464)
238 1uuj_A Platelet-activating fac 36.3 13 0.00043 24.9 1.1 18 24-41 64-81 (88)
239 3swf_A CGMP-gated cation chann 36.3 87 0.003 20.2 5.3 34 21-54 3-36 (74)
240 2w6b_A RHO guanine nucleotide 36.1 77 0.0026 19.6 6.2 24 23-46 15-38 (56)
241 2akf_A Coronin-1A; coiled coil 36.1 56 0.0019 18.0 4.8 27 29-55 3-29 (32)
242 2vz4_A Tipal, HTH-type transcr 36.0 51 0.0017 21.1 4.1 31 27-57 76-106 (108)
243 2z5i_A TM, general control pro 35.8 69 0.0024 19.0 6.5 25 26-50 6-30 (52)
244 3o0z_A RHO-associated protein 35.8 1.3E+02 0.0044 22.1 7.2 32 18-49 48-79 (168)
245 3mq9_A Bone marrow stromal ant 35.1 80 0.0027 24.7 5.8 24 30-53 434-457 (471)
246 3rrk_A V-type ATPase 116 kDa s 34.9 87 0.003 23.7 5.8 28 20-47 101-128 (357)
247 3tq2_A KE1; parallel three hel 34.4 63 0.0022 18.1 4.8 29 23-51 6-34 (36)
248 1t7s_A BAG-1 cochaperone; stru 33.9 39 0.0013 24.3 3.4 34 9-46 96-129 (137)
249 2zqm_A Prefoldin beta subunit 33.9 92 0.0031 19.8 5.8 31 28-58 73-103 (117)
250 3rrk_A V-type ATPase 116 kDa s 33.8 1.1E+02 0.0038 23.1 6.3 40 20-59 94-136 (357)
251 2yko_A LINE-1 ORF1P; RNA-bindi 33.8 1.2E+02 0.004 23.4 6.3 88 17-104 12-112 (233)
252 3a2a_A Voltage-gated hydrogen 33.7 86 0.003 19.5 5.8 34 15-48 15-48 (58)
253 3pvv_A Chromosomal replication 33.6 50 0.0017 21.7 3.8 26 24-49 71-96 (101)
254 1lwu_C Fibrinogen gamma chain; 32.8 1.1E+02 0.0038 24.2 6.3 35 23-57 24-58 (323)
255 3na7_A HP0958; flagellar bioge 32.8 1.5E+02 0.005 21.9 8.3 13 65-77 206-218 (256)
256 2z5i_I TM, tropomyosin alpha-1 32.7 72 0.0025 18.3 4.3 28 7-34 6-33 (40)
257 3nmd_A CGMP dependent protein 32.5 1E+02 0.0034 19.8 6.1 27 32-58 40-66 (72)
258 1buu_A Protein (mannose-bindin 32.1 60 0.0021 21.8 4.1 25 22-46 20-44 (168)
259 2gkw_A TNF receptor-associated 31.7 98 0.0033 21.7 5.3 27 29-55 4-30 (192)
260 3hh0_A Transcriptional regulat 31.7 1.2E+02 0.0042 20.6 6.2 38 24-61 79-116 (146)
261 3l4f_A RHO guanine nucleotide 31.5 51 0.0017 20.7 3.3 33 23-55 12-44 (61)
262 3pbf_A Pulmonary surfactant-as 31.4 45 0.0015 21.5 3.3 20 36-55 6-25 (148)
263 4b4t_M 26S protease regulatory 31.3 39 0.0013 27.5 3.5 27 29-55 43-69 (434)
264 1ic2_A Tropomyosin alpha chain 31.2 97 0.0033 19.3 8.2 38 18-55 20-57 (81)
265 2aze_B Transcription factor E2 30.3 85 0.0029 21.0 4.6 26 25-50 6-31 (106)
266 1r8d_A Transcription activator 29.8 1.1E+02 0.0038 19.4 5.2 28 28-55 78-105 (109)
267 2yo3_A General control protein 29.7 64 0.0022 25.4 4.4 39 21-59 226-264 (268)
268 2v71_A Nuclear distribution pr 29.7 1.7E+02 0.0058 21.7 7.2 16 21-36 59-74 (189)
269 3vlc_E Golgi to ER traffic pro 29.7 76 0.0026 21.4 4.2 42 20-61 32-85 (94)
270 1htn_A Tetranectin; plasminoge 29.7 31 0.0011 23.5 2.3 20 35-54 25-44 (182)
271 1lwu_B Fibrinogen beta chain; 29.6 56 0.0019 25.9 4.0 32 26-57 29-60 (323)
272 1q06_A Transcriptional regulat 29.5 1.3E+02 0.0043 20.1 5.8 35 25-59 79-113 (135)
273 4e61_A Protein BIM1; EB1-like 29.4 1.4E+02 0.0047 20.4 6.3 29 22-50 15-43 (106)
274 3coq_A Regulatory protein GAL4 29.3 92 0.0032 18.7 4.3 8 70-77 68-75 (89)
275 1wt6_A Myotonin-protein kinase 29.3 72 0.0025 21.0 3.9 51 4-57 13-70 (81)
276 3u1c_A Tropomyosin alpha-1 cha 29.2 1.2E+02 0.0041 19.8 8.1 36 19-54 24-59 (101)
277 4ioe_A Secreted protein ESXB; 29.0 96 0.0033 18.5 4.8 31 21-51 12-42 (93)
278 1a92_A Delta antigen; leucine 28.8 93 0.0032 18.8 4.0 31 24-54 13-43 (50)
279 3iyn_Q Protein IX, PIX, hexon- 28.6 41 0.0014 24.2 2.8 25 23-47 103-127 (140)
280 2zdi_C Prefoldin subunit alpha 28.6 1.2E+02 0.0042 20.6 5.3 33 23-55 103-135 (151)
281 2l5g_B Putative uncharacterize 28.4 93 0.0032 18.2 5.0 32 22-53 6-37 (42)
282 3ghg_A Fibrinogen alpha chain; 28.2 2.9E+02 0.01 23.9 8.7 64 1-73 94-157 (562)
283 1j1v_A Chromosomal replication 28.1 66 0.0023 20.7 3.6 25 24-48 68-92 (94)
284 3gwk_C SAG1039, putative uncha 27.9 1E+02 0.0036 18.6 5.7 33 21-53 11-43 (98)
285 4e61_A Protein BIM1; EB1-like 27.9 1.2E+02 0.0041 20.7 5.0 33 7-39 7-39 (106)
286 1pwb_A SP-D, PSP-D, pulmonary 27.9 81 0.0028 21.2 4.2 20 34-53 33-52 (177)
287 3twe_A Alpha4H; unknown functi 27.8 74 0.0025 16.8 3.8 21 27-47 3-23 (27)
288 3gp4_A Transcriptional regulat 27.6 1.4E+02 0.005 20.1 6.1 39 19-57 82-120 (142)
289 1gk4_A Vimentin; intermediate 27.4 1.2E+02 0.0041 19.1 6.0 23 22-44 30-52 (84)
290 3pjs_K KCSA, voltage-gated pot 27.3 1.5E+02 0.0052 20.3 5.9 16 38-53 144-159 (166)
291 1ef1_C Moesin; membrane, FERM 27.2 27 0.00093 23.3 1.6 22 31-52 25-46 (90)
292 2v4h_A NF-kappa-B essential mo 27.1 1.6E+02 0.0054 20.4 6.3 35 23-57 43-80 (110)
293 2v66_B Nuclear distribution pr 26.9 1.5E+02 0.0052 20.2 6.5 32 22-53 39-70 (111)
294 1hwt_C Protein (heme activator 26.7 25 0.00087 21.1 1.3 19 32-50 58-76 (81)
295 2ke4_A CDC42-interacting prote 26.6 1.4E+02 0.0048 19.7 5.2 36 25-60 15-50 (98)
296 2yko_A LINE-1 ORF1P; RNA-bindi 26.5 1.9E+02 0.0063 22.3 6.4 40 19-58 7-46 (233)
297 4ati_A MITF, microphthalmia-as 26.4 16 0.00053 24.9 0.3 18 6-23 32-49 (118)
298 3bas_A Myosin heavy chain, str 26.4 1.3E+02 0.0044 19.2 5.8 19 22-40 39-57 (89)
299 3swy_A Cyclic nucleotide-gated 26.1 1.1E+02 0.0036 18.0 6.1 35 22-56 2-36 (46)
300 1ytz_I Troponin I; muscle, THI 25.9 1.5E+02 0.005 22.1 5.5 56 15-70 59-114 (182)
301 4b4t_K 26S protease regulatory 25.7 1E+02 0.0034 25.0 5.0 35 21-55 45-79 (428)
302 2y7c_A Type-1 restriction enzy 25.6 2.1E+02 0.0071 21.4 6.5 39 23-61 168-206 (464)
303 1fxk_A Prefoldin; archaeal pro 25.3 1.3E+02 0.0044 18.8 5.3 25 23-47 77-101 (107)
304 2zvf_A Alanyl-tRNA synthetase; 25.1 1.4E+02 0.0046 20.2 5.0 27 30-56 30-56 (171)
305 4gkw_A Spindle assembly abnorm 25.0 1.8E+02 0.006 21.2 5.7 7 14-20 96-102 (167)
306 4b4t_J 26S protease regulatory 24.9 1.8E+02 0.0061 23.5 6.4 39 18-56 25-63 (405)
307 4b4t_J 26S protease regulatory 24.8 1E+02 0.0035 25.0 4.9 36 19-54 33-68 (405)
308 1fxk_C Protein (prefoldin); ar 24.8 1.5E+02 0.0052 19.4 6.4 37 21-57 91-127 (133)
309 2fxo_A Myosin heavy chain, car 24.8 1.6E+02 0.0055 19.7 8.2 40 18-57 83-122 (129)
310 4i0x_B ESAT-6-like protein MAB 24.7 1.3E+02 0.0046 18.8 5.7 33 22-54 15-47 (103)
311 3sja_C Golgi to ER traffic pro 24.7 1.4E+02 0.0046 18.8 6.6 37 22-58 10-58 (65)
312 3lay_A Zinc resistance-associa 24.4 2E+02 0.0069 20.7 8.4 49 9-57 76-131 (175)
313 2e7s_A RAB guanine nucleotide 23.6 26 0.00088 25.1 1.0 34 22-55 100-133 (135)
314 4etp_A Kinesin-like protein KA 23.2 2.9E+02 0.0098 22.0 8.7 40 20-59 19-58 (403)
315 3zbh_A ESXA; unknown function, 22.9 1.3E+02 0.0044 17.9 5.7 32 21-52 12-43 (99)
316 3i5c_A Fusion of general contr 22.9 1.3E+02 0.0044 19.8 4.4 26 20-45 2-27 (206)
317 1vq8_V 50S ribosomal protein L 22.8 86 0.0029 19.5 3.3 18 35-52 15-32 (71)
318 2gkw_A TNF receptor-associated 22.8 2E+02 0.0068 20.0 5.7 33 21-53 3-35 (192)
319 2zdi_C Prefoldin subunit alpha 22.8 1.8E+02 0.0063 19.7 5.9 37 18-54 105-141 (151)
320 3iv1_A Tumor susceptibility ge 22.8 1.6E+02 0.0055 19.0 6.4 23 27-49 48-70 (78)
321 3n7n_E Monopolin complex subun 22.4 18 0.00063 24.6 0.0 32 28-59 39-77 (95)
322 3j21_W 50S ribosomal protein L 22.0 91 0.0031 19.5 3.3 18 35-52 12-29 (72)
323 1got_B GT-beta; complex (GTP-b 21.8 64 0.0022 23.0 2.8 23 33-55 3-25 (340)
324 3r8s_Y 50S ribosomal protein L 21.8 74 0.0025 19.3 2.7 22 34-55 11-32 (63)
325 2efr_A General control protein 21.6 2.3E+02 0.0077 20.3 6.5 14 35-48 101-114 (155)
326 1fzc_C Fibrin; blood coagulati 21.3 1.6E+02 0.0056 23.2 5.3 36 22-57 15-50 (319)
327 3kqg_A Langerin, C-type lectin 21.2 1.9E+02 0.0064 19.2 5.5 31 26-56 17-47 (182)
328 2yny_A General control protein 20.8 1.5E+02 0.0051 20.3 4.4 32 23-54 74-105 (106)
329 3tul_A Cell invasion protein S 20.5 2.6E+02 0.0087 20.5 5.9 41 16-56 74-124 (158)
330 1pyi_A Protein (pyrimidine pat 20.4 1.6E+02 0.0053 18.0 5.3 20 40-59 49-68 (96)
No 1
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=99.82 E-value=1.1e-20 Score=126.53 Aligned_cols=58 Identities=41% Similarity=0.539 Sum_probs=54.4
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
|+|||+||+|||+|+|+++++++.+|.+|++||..|+.+|.+|++|+..||++|++|+
T Consensus 20 R~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 20 RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7899999999999999999999999999999999999999999999999999999986
No 2
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.81 E-value=4.9e-20 Score=125.58 Aligned_cols=60 Identities=40% Similarity=0.519 Sum_probs=55.4
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
|+|||+||+|||+|+|+++++++.++.+|++||..|+.+|++|++|+..|+.+|.++++.
T Consensus 20 R~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 20 RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 789999999999999999999999999999999999999999999999999999998765
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.63 E-value=8.5e-16 Score=97.02 Aligned_cols=57 Identities=30% Similarity=0.407 Sum_probs=54.9
Q ss_pred CcchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 1 MAEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 1 ~reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+++||++||.|||+++|++..+++.+|..|+.+|..|+.+|..|+.|+..|+++|++
T Consensus 5 r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999999999999874
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.62 E-value=1.3e-15 Score=97.11 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=56.2
Q ss_pred CcchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 1 MAEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 1 ~reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+|+||++||.|||++++++..+++.+|..|+.+|..|+.+|..|+.|+..|+.+|..|
T Consensus 6 rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999999999999999999999999999999999999999999987
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.62 E-value=6.1e-16 Score=98.09 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=50.3
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
|+||++||+|||++++++..+++.+|..|+.+|..|+.+|..|+.|+..|+++|.+|
T Consensus 6 r~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~H 62 (62)
T 1jnm_A 6 RMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH 62 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999999999999999999999999999987
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.61 E-value=2.4e-15 Score=96.17 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=53.8
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|+||++||.|||+|+|++..+++.++..|+.+|..|+.+|..|+.|+.+||+||..
T Consensus 7 r~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 7 MEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999975
No 7
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.22 E-value=1.9e-11 Score=78.27 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=44.2
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
|.||++||+|||++++.+..+++.+|..|+.+|..|+.+|..|+.++.
T Consensus 14 R~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 14 RARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999988764
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.85 E-value=4e-09 Score=65.84 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=43.5
Q ss_pred chhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 3 EPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 3 eRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
.+|.+||++||.++++...+++.+|..|+.||..|+.+|..|+.++
T Consensus 7 ~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 7 MKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999998764
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.04 E-value=8.2e-06 Score=53.27 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=38.4
Q ss_pred chhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 3 EPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 3 eRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..|..|.+.+|+.+.+...+++.+|..|+.+|..|..++..|+.++..|..
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999976555555555555555444443
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.56 E-value=0.00025 Score=42.58 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
-.+++.|+.+|+.-|..|+.+|..|+.|...||+++.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4689999999999999999999999999999999874
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.55 E-value=0.00059 Score=46.47 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=49.6
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
||..||.-||.|+-+...+++..+..|..+-+.|+.+...+.+|++.+|.-+..
T Consensus 34 KNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 34 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999987754
No 12
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=97.01 E-value=1.7e-05 Score=55.61 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=32.4
Q ss_pred chhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 3 EPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 3 eRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
-+|..||+.||.|+.+...+++..+..|..+.+.|..+...|..|++.|
T Consensus 43 lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 43 LKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999988887555444444444444444444444433
No 13
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=96.69 E-value=0.0053 Score=39.17 Aligned_cols=38 Identities=26% Similarity=0.140 Sum_probs=28.7
Q ss_pred cchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy12101 2 AEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEE 39 (105)
Q Consensus 2 reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~ 39 (105)
|-||.+|++|||.|-|+--+--..=+..-..||+.|+.
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~ 43 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 45899999999999988776666656666666666654
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=96.11 E-value=0.011 Score=36.42 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.-++.|..||+.|+.+|+.|++++..|+.-|.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4588999999999999999999999999887654
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=95.14 E-value=0.043 Score=31.47 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
|-.+++.||++|-.+|..|+.+|..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 556788899999999988887777443
No 16
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=95.10 E-value=0.025 Score=30.84 Aligned_cols=26 Identities=42% Similarity=0.607 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..|+=||++|+.+|..|++.+..||+
T Consensus 3 dalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHhccHHHHHHHHHHHHHHHHhcC
Confidence 45888999999999999999998873
No 17
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=95.07 E-value=0.04 Score=31.99 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
+..+++.+|++|..+|..|+.+|.-|+..+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345677788888888887777777665544
No 18
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.96 E-value=0.089 Score=30.49 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
|..+++.+|++|-.+|..|+.+|.-|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5567778888888888877777765544
No 19
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.95 E-value=0.033 Score=31.80 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L 44 (105)
.+++.+|++|-.+|..|+.+|.-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 467788888888888877776644
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.42 E-value=0.085 Score=30.24 Aligned_cols=27 Identities=4% Similarity=0.085 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
|-.+++.+|++|-.+|..|+.+|.-|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 556788888888888888877776443
No 21
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.00 E-value=0.057 Score=30.82 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|..+|+..-+.|-.+-..|..|+..||.|+.+
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 56789999999999999999999999999864
No 22
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=93.92 E-value=0.085 Score=30.26 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
+|..+++.+|++|-.+|..|+.+|.-|+.
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567888999999999888887775543
No 23
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=93.61 E-value=0.15 Score=28.99 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
-.+++.+|++|-.+|..|+.+|.-|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45788899999999988887776443
No 24
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=93.60 E-value=0.089 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|+.+|+..-+.|-.+...|..|+..||.++-.
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 478899999999999999999999999999865
No 25
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=93.60 E-value=0.18 Score=28.31 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+..|.+|..+|+.+|..|+=|+..||+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777777777777777777765
No 26
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=93.20 E-value=0.17 Score=29.29 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|+.+|+..-+.|-.+-..|..|+..||.++-.
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999865
No 27
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.06 E-value=0.14 Score=29.31 Aligned_cols=27 Identities=0% Similarity=0.245 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
|-.+++.+|++|-.+|..|+.+|.-|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 446788889999998888887776544
No 28
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=93.04 E-value=0.19 Score=28.57 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
.+++.+|++|-.+|..|+.+|.-|+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566777777777766666665443
No 29
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=92.99 E-value=0.12 Score=28.11 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
+..|.+.|.+|+.+|..|.-|+..|.
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 34678889999999999888887663
No 30
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.97 E-value=0.22 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
|..+|+...+.|-.+...|+.|+..|+.|+-
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999874
No 31
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=92.89 E-value=0.15 Score=29.18 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L 44 (105)
+.|....++-+++|+..|..|+.+|-.|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 4566777888888999999988888765
No 32
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=92.52 E-value=0.19 Score=28.81 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
-.+++.+|++|-.+|..|+.+|. .||.||.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~-------RLk~LL~ 32 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELA-------RIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHTT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH-------HHHHHHc
Confidence 35677888888888877776665 5555553
No 33
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=92.31 E-value=0.28 Score=28.09 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|..+|+..-+.|-.+-..|..|+..||.|+-.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 478899999999999999999999999999853
No 34
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=92.25 E-value=0.28 Score=28.05 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|..+|+..-+.|-.+-+.|..|+..||.|+..
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 478899999999999999999999999999853
No 35
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=91.59 E-value=0.22 Score=28.55 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12101 36 MLEEKIKILSRELSFLKN 53 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK~ 53 (105)
+|+.+|+.|-.+...|.+
T Consensus 5 QLEdKVEeLl~~n~~Le~ 22 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIEN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 345555555555555544
No 36
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.42 E-value=0.94 Score=28.21 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+--+.++.+|+.+-..|+.+-..|..|+..|+.++.
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444567888899999999999999999999888764
No 37
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=91.34 E-value=0.83 Score=30.13 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=36.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.+-..+++.++..|..|...|+.+|+.+..++..|+.--...
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999998866554
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.70 E-value=0.38 Score=31.48 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
...+.++.+|+++.......|..|+.|++.++..|
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44455678888888888888888888888876644
No 39
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.51 E-value=0.68 Score=31.80 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
.-..+..+++.|+.||..|+.+++.|.-++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888754
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=90.39 E-value=0.63 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+..|..++..|+.+++.|+.++..|+.-+.+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888888888888888777653
No 41
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=90.35 E-value=0.62 Score=26.10 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
.+++..|.+.+.||-.|+.+|.+|..|
T Consensus 4 aqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 456778888899999999999988766
No 42
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.34 E-value=0.58 Score=26.58 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|..+|+..-+.|-.+-..|..|+..||.|+-.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 46789999999999999999999999999853
No 43
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=90.28 E-value=1 Score=27.43 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Q psy12101 25 ERVNKLKTENDMLEEKIKIL-------SRELSFLKNLFLAHA 59 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L-------~kEl~~LK~ll~~h~ 59 (105)
+++..|++-|+.|-.+|..| .+|+..|+.+|.+|.
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence 44455555555555555444 456678888887763
No 44
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=90.22 E-value=1.6 Score=29.24 Aligned_cols=28 Identities=25% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+--+||..|..+|+.|..|+..||.++.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666555555555555543
No 45
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=90.00 E-value=0.7 Score=26.39 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
|-.+++.+|++|-.+|..|..+|.-|+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456677778887777777666665443
No 46
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=89.81 E-value=0.64 Score=29.32 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Q psy12101 25 ERVNKLKTENDMLEEKIKIL-------SRELSFLKNLFLAHA 59 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L-------~kEl~~LK~ll~~h~ 59 (105)
.++..|++-|..|-.+|..| .+|+..|..||.+|.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667777777777777776 468888999998874
No 47
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=89.69 E-value=1.3 Score=29.68 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=34.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++||.--.+.-..-..|.++.+.|+.+|..|++|+..|+.|...
T Consensus 35 E~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 35 EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777888888888888999999999999888654
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.56 E-value=0.8 Score=30.46 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKI-------LSRELSFLKNLFL 56 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~-------L~kEl~~LK~ll~ 56 (105)
++.++++|+.+|..|..++.. |..|+..|++=..
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455777777777776555555 5556665555443
No 49
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=89.54 E-value=1.5 Score=26.42 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEK-------IKILSRELSFLKNLF 55 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~-------I~~L~kEl~~LK~ll 55 (105)
+++..|..|+.||+.|+.+ |.-|.+|+..||.-+
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4566677778888777654 566677777776543
No 50
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=89.53 E-value=0.83 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
..++.+...|..|++.|+.++..|++++.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444454555555444444443
No 51
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=89.51 E-value=0.45 Score=26.69 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|..+|+.+|..|++|+..||--+.+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887755443
No 52
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.22 E-value=2.8 Score=27.90 Aligned_cols=48 Identities=8% Similarity=0.246 Sum_probs=42.5
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 6 LQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 6 N~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..|+...=.+-+.-+..+.+.+..|++|.+.|..+|..++.|...|..
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 467777778888889999999999999999999999999999888865
No 53
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=89.16 E-value=0.73 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+|+.+|+..-+.|-.+-..|..|+..|+.++-
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999875
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.07 E-value=2.6 Score=25.82 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.++.+|+.+-..|..+-..|..++..|+..+..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888888887776544
No 55
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=89.01 E-value=0.5 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|..+|+..-+.|-.+=..|..|+..||.|+-.
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 477899999999999999999999999998753
No 56
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=88.97 E-value=1.2 Score=27.05 Aligned_cols=31 Identities=39% Similarity=0.513 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
..+.+|+.+...|+.+-..|..++..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467777777777777777777777776554
No 57
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=88.88 E-value=0.86 Score=26.01 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+|..+|+..-+.|-.+-..|..|+..|+.||-
T Consensus 1 ~RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 1 MKLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999985
No 58
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=88.73 E-value=2.1 Score=28.41 Aligned_cols=31 Identities=39% Similarity=0.334 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.|+.|+.....|..++.+|+.|+..||.+..
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4667777777888888888888888887754
No 59
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=88.39 E-value=0.73 Score=27.44 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKI 41 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I 41 (105)
.+..+++.|+..|+.||..||.-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 356788888888999998888765
No 60
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.38 E-value=1.2 Score=29.58 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
-.+|..||++|..|+.+|..++.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 36899999999999999998863
No 61
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=87.47 E-value=2.1 Score=28.69 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+--+||..|..+|+.+..|+..||....
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666555555555554443
No 62
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=87.42 E-value=2.6 Score=26.12 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIK-------ILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~-------~L~kEl~~LK~ll~~ 57 (105)
+++-..|+.|..||.-|+.+++ .|..|..-+|.++..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 5677789999999999988654 566777777777654
No 63
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.24 E-value=3.4 Score=24.98 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+++.+|+.+...|..+...|..++..|+.-+..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888776543
No 64
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=87.11 E-value=1.2 Score=30.54 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.++..+.+...+++..|+.+|..|+.|+..+|
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667788888999999999999999998876
No 65
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=86.86 E-value=1.8 Score=30.32 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHh
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLL 76 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll 76 (105)
.+|.++...|..+|..|+.+|..|+..+.-...+. +.+|+.|.
T Consensus 3 ~~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~------~~eL~~LI 45 (122)
T 3viq_A 3 MQLLSRRLKLEKEVRNLQEQLITAETARKVEAKNE------DKDLQTLI 45 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------HHHHHHHH
Confidence 36888999999999999999999999988766553 45566654
No 66
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=86.67 E-value=0.3 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L 44 (105)
--.||..|+++|..|+.+|..|
T Consensus 18 yidkVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3468999999999999998653
No 67
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=86.67 E-value=2.6 Score=32.45 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
-..-..|.++.+.|+.+|..|++|+..|+.|.
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 68
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.61 E-value=1.6 Score=30.35 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEE 39 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~ 39 (105)
.+++.++..|+.||..|+.
T Consensus 40 l~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655554
No 69
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=86.29 E-value=3.2 Score=27.72 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 14 VKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 14 ~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++|+.--.+.-+.-+.|.++.+.++.+|..|+.|+..|+.+-..
T Consensus 27 E~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 27 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777889999999999999999999999988765
No 70
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.10 E-value=3.4 Score=26.72 Aligned_cols=42 Identities=12% Similarity=-0.075 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.|..+++.|+.+++.-.+.|-..|....++++.|+..+..-.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777777777777665543
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.45 E-value=5.1 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+.++.+|+.|+..|..++.....|+..||.-.-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 567888888888888888777777777776544
No 72
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=85.28 E-value=0.89 Score=30.78 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..|..+|+.+...|+.+|..|+.|++.|+..
T Consensus 6 ~~~~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 6 HHRMKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3577899999999999999999999999863
No 73
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.24 E-value=1.8 Score=27.47 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
...++.++..|+.|.+.|+.++..|...+..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888888887777654
No 74
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=84.33 E-value=2.7 Score=27.25 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
++.+|+..++.+|..|+.+|..|+..+..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566777777777777777766655543
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=83.98 E-value=1 Score=27.45 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
++..-...|..||..|+.+|..|+.+
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666777777777777666554
No 76
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.91 E-value=1.2 Score=29.51 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 33 ENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK 52 (105)
|-+.|+.+|..|...+..|.
T Consensus 16 EVevLKe~I~EL~e~~~qLE 35 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLE 35 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.37 E-value=1.6 Score=26.50 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKI 41 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I 41 (105)
...+++.++..|.++++.|++++
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 78
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=83.12 E-value=5.8 Score=24.03 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+-.+++.++..|..-|..|-.-+..-+.||..|+.-+..
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888888888888888888888887776643
No 79
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.04 E-value=8.1 Score=28.58 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy12101 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGST 62 (105)
Q Consensus 8 AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~ 62 (105)
.-|+.|...-+...+++.|+..|..|...++.....+..|...|-+.|..-.+.+
T Consensus 80 qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 80 AERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888999999999999999999999999999999999998876654
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.75 E-value=4.6 Score=32.02 Aligned_cols=44 Identities=11% Similarity=-0.020 Sum_probs=29.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
|++.++-.+.++.+.+.|++||++|+..+..+...+..-+..+.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 34445555667777777888888888887777777665555443
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=82.61 E-value=5.5 Score=26.38 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
....+..+++.+...|+.+=..|+.++..|+.-+..
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666555543
No 82
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=82.22 E-value=3 Score=25.43 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
++.+|..+-..|-.+|.+|..++..|+.=
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777653
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.11 E-value=2.7 Score=33.89 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=4.0
Q ss_pred HHHHhhcc
Q psy12101 72 LESLLADA 79 (105)
Q Consensus 72 l~~ll~~~ 79 (105)
|..+.+.-
T Consensus 574 ~~~l~~~~ 581 (597)
T 3oja_B 574 VKQLEAKK 581 (597)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 44555544
No 84
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.67 E-value=2.2 Score=24.68 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.-+||.+|...|++-..|+..||.
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~ 28 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888777777777777765
No 85
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.37 E-value=5.9 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl 48 (105)
.+++++..|+.++..|++++
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 86
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=81.30 E-value=3.2 Score=26.69 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+..|+.++..|..+++.|+.|...|+.-|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667999999999999999999999987664
No 87
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.29 E-value=4.3 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.+...|+.+...|+.+...|+.+++.|+.-+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777776543
No 88
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=81.26 E-value=4.2 Score=27.32 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
....|+.||..|..+|+.|..|+..+..-+....
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999886655543
No 89
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.20 E-value=8.4 Score=26.24 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 34 NDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...|+.+|+.|+.|+.+||.+..+
T Consensus 85 r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446889999999999999998764
No 90
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=81.14 E-value=2.6 Score=22.61 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
+|..|.-.|+.+|..|+.|+..|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 45666666666666666666554
No 91
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=80.99 E-value=1.9 Score=23.83 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
-...|+.||.+|+++|+.|-.
T Consensus 7 llasleaenkqlkakveella 27 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998754
No 92
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=80.98 E-value=2.9 Score=25.02 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=21.6
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 8 AVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 8 AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
||-||--..-.++-=-.+....|+.|-.+|+.++..|+..+..||
T Consensus 3 aalkselqalkkegfspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444333333333334445555555555555555555554443
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=80.87 E-value=6.8 Score=24.97 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
+++.....|..||..|+.+|..|+.|+..|
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444455555555666665555555544
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.11 E-value=2 Score=28.32 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+.+|+..++.+|..|+.+|..|+..+.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445666666666666666666655443
No 95
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=79.85 E-value=6.6 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+--+||..|..+|+++..|+..||.
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666555555554443
No 96
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.39 E-value=3.5 Score=33.37 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.++..++..|+++...|+.+|+.++.++..|++.+..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666665554
No 97
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.38 E-value=2.9 Score=32.76 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+..+++..+..|...|..|...+..+++|+..||.-+..-
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446777888888888888888888888888888888553
No 98
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=79.35 E-value=5.5 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+..|+.++..|..+++.|+.+...|+.-|.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555443
No 99
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=79.24 E-value=8 Score=25.70 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
...++.++.+.+..|..|..+|..|++++..|+
T Consensus 40 ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 40 NQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999988864
No 100
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.18 E-value=9.8 Score=24.12 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+..+...+...++.|...|..+|..|..+++....-+..
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777778888888888888888777766654
No 101
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=78.88 E-value=6.3 Score=25.97 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+||.--.+.-..-..|-++...+..+|..|+.|+..|+.+...
T Consensus 24 ~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 24 QRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666666677777777777777776666554
No 102
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.87 E-value=7.4 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 31 KTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..|+..++.+++.+++|+..|+.
T Consensus 95 K~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 95 KHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444443333
No 103
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=78.46 E-value=3 Score=29.02 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
+|...|+++|+.+.+-+..||++|.+..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks 31 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKI 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888887653
No 104
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.31 E-value=11 Score=30.33 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++.++.++++..+.-+.++..|++|+..++.-+.+
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555544444
No 105
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=78.05 E-value=6.3 Score=30.26 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
....++.++..|+.|+..|+.+...|+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655555555555544443
No 106
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=78.03 E-value=3.4 Score=26.47 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
-..++.+|+.++..=..+|..|+.++..++.+|.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567889999999999999999999999999886
No 107
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.80 E-value=5.1 Score=26.46 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..++...+..+..||..|..+|..|..++..||.
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888888888888775
No 108
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=77.59 E-value=1 Score=34.30 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q psy12101 28 NKLKTENDMLEEK---IKILSRELSFLKNLFLA 57 (105)
Q Consensus 28 ~~Le~EN~~Lr~~---I~~L~kEl~~LK~ll~~ 57 (105)
++|++||..|+.+ ...|+.|+..||.+|..
T Consensus 29 ~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 29 QHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555544433 33455566667666554
No 109
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=77.48 E-value=7.6 Score=21.96 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++....+|-.+.+.+|...+.|+..+|.++.+
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788899999999999999999988764
No 110
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=77.21 E-value=3.7 Score=28.40 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
..++..++..|.+|+..|+.+++.|+.++....
T Consensus 27 ~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 27 PAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999999987764
No 111
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=77.09 E-value=9.6 Score=24.66 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
...+..+.+.++.+...|..+++.+.+++..|+.-|.+.-
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999998888777643
No 112
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=76.54 E-value=7.4 Score=25.47 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
-+..|..+|+.|+.|+..||+.+-...
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356677888888888888888776643
No 113
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.41 E-value=12 Score=28.00 Aligned_cols=46 Identities=20% Similarity=0.131 Sum_probs=37.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 13 RVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 13 R~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.+-+|+=+.+++..+..+++.|..|+.++..|+.|+..+|.-+...
T Consensus 37 qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 37 QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677888888888999999999999999999988888777654
No 114
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=76.29 E-value=10 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...+..+.+.++.+...|..+++.+.+++..|+.-|.+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999999998887764
No 115
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=75.95 E-value=11 Score=23.18 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=30.5
Q ss_pred hHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 12 SRVKSRIKTQ-ETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 12 SR~KrKqk~~-e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
-|..-|.++. .++--|..|+.+|..|+..|..|.+.+..|..
T Consensus 10 nrvayklkenaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 10 NRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3333344433 45666889999999999999999999887753
No 116
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.21 E-value=7.6 Score=25.22 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
-...++.+...|..+.+.|+.+..+|..++..|+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777777777777777777776664
No 117
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.49 E-value=15 Score=24.25 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 37 LEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 37 Lr~~I~~L~kEl~~LK~ll~ 56 (105)
|..++.+|+.|...+..-|.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666555544443
No 118
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=74.45 E-value=8.7 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.+|..-.+.|+.+|..|...++.|...|.+
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555666666666666666666665543
No 119
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=74.42 E-value=4 Score=26.62 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.+.---..|+.+|+.|+.|+.+||.
T Consensus 60 ~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 60 NASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444456799999999999999985
No 120
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.08 E-value=12 Score=22.58 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
-.+++.+|+.+-..|..+-..|..++..|+.-+..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888888877654
No 121
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=74.04 E-value=4.5 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
-++..|-+.|++-...|+.+++.|+..+..|
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4677888888888888888888888877643
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.72 E-value=12 Score=29.42 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.|+++|+.|...|..+|+.++.|+..+|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5888888888888888888888888776
No 123
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=72.27 E-value=16 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
|-..++..||.+|+.|-.+-+.++..=+.|+..|+..|....
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd 67 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKD 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhH
Confidence 455677888888988888888888888999999999988754
No 124
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=72.15 E-value=18 Score=23.86 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+..+...+..+++.|...|..+|..|..|++.+..-|..
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777888888888888777666654
No 125
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=71.92 E-value=13 Score=24.08 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.++...+..+..+|.+|..++..++..+..+|.-+-.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999887654
No 126
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.17 E-value=5 Score=31.43 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
....+..+...|..+...|+.+|..|+.|++.|+.
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666666777777777777777777777765
No 127
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=71.01 E-value=6.5 Score=25.07 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+|+.++..|+.++..|+.++.
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 128
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=70.15 E-value=13 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+++-.||++|..|++.|+.++..++.-...+..-+..
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888887777776666655443
No 129
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=70.05 E-value=15 Score=22.10 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=25.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
+.....+..|-..|..-...-+.+|..|+.||+.|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777777777777777777777777765
No 130
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=69.93 E-value=17 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..|..+++.+++..-+.|-.++-.|..|+..||.|+.-|.
T Consensus 71 I~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~~~ 110 (114)
T 2xzr_A 71 INENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKLHH 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 3455566777777777888888888999999999987654
No 131
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.85 E-value=8.7 Score=29.07 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..-|..|..||..|..+++....|++.|+.-+..
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~s 52 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDS 52 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666666666666666666666665554433
No 132
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=69.18 E-value=18 Score=28.81 Aligned_cols=38 Identities=8% Similarity=-0.022 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
++..+...+.+...|+..++.+...|..|+..+.+...
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666666665554443
No 133
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=67.80 E-value=10 Score=28.33 Aligned_cols=29 Identities=14% Similarity=-0.123 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
=+..+-..+..|+.++..|++|++.|+.=
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666655543
No 134
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.86 E-value=2 Score=32.70 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...|.+||..|++++..|+.++..+..+-.+
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~E 51 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLKKE 51 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999988887664
No 135
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=65.91 E-value=8.8 Score=23.71 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
++|-.||+.|++|+..||.-|..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh
Confidence 56778889999999999887765
No 136
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=65.81 E-value=25 Score=22.98 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.+...+...++.|...|..+|..|..+++.+..-|.
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666655554443
No 137
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=65.72 E-value=8.6 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy12101 36 MLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.|+.++..|..|+..|+..+-+
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555555443
No 138
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=65.63 E-value=19 Score=21.76 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
|=|+-...+..||.+|+.-...++.+|+-|++=
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 345556677778888888888888777777653
No 139
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.40 E-value=6.3 Score=21.23 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
+.++-..|.+|..+|+-+|..|.
T Consensus 5 lkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHHHHhc
Confidence 44556677788888888887764
No 140
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=65.32 E-value=15 Score=20.34 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.|.+|++|...-+++--+|.+|+..|.
T Consensus 2 evaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 367888888888888888888887764
No 141
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=65.06 E-value=5.8 Score=31.04 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.+.++.|+.+|..|+++|+.|+++...++.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445777777777777777777776666655
No 142
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.93 E-value=20 Score=24.30 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..++...+..+..||..|..+|..++..++.+|.-+-.
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45778889999999999999999999999888876543
No 143
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.84 E-value=22 Score=24.17 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..+.+|....+.|.+.|+.++..|+..++..-..
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~ 40 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKLDNTTAA 40 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777778888888888887777654433
No 144
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.59 E-value=15 Score=33.43 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
+++++++..|++||..|+.++..|...+...
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777776444443
No 145
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=63.89 E-value=19 Score=24.80 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..+...|++....|+++|..|+.-+..|...+..+.
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777777777777766666554
No 146
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.80 E-value=18 Score=29.42 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
++..+++.+.+++..|+..+++++.....+-..|.+.+....
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444455555555555555555544444455555555443
No 147
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=61.44 E-value=28 Score=22.05 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.-.|.+++.+=-..|.+|--.|..+|..|+.|...||
T Consensus 25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 25 SEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3445555555555666666666667777777777665
No 148
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=60.71 E-value=27 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
+-.++..+.+.|...|+..|..|-.+|..|....
T Consensus 46 ~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 46 REQQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3456677888889999999999999998887654
No 149
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=60.38 E-value=18 Score=20.40 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..+|....+.|+.|++++..|..-+
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 34566666666666666666666544
No 150
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=60.13 E-value=53 Score=25.96 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
...++-++..++.+...++..|..-+.|+..|+..+-....+
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~ 345 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEEN 345 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777888888888888888888888888888887655443
No 151
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=59.30 E-value=27 Score=22.45 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
++...+..|..|++.|..++..+..|+..++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999998888888887766
No 152
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.30 E-value=27 Score=21.07 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
|+.+-..|+.-|..|+.|+..|..-+..
T Consensus 22 lerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555566666666666554433
No 153
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=58.56 E-value=40 Score=22.92 Aligned_cols=42 Identities=29% Similarity=0.261 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+.+..++..++..|+.|-=.|+.+|..-..||..|+.-+.+.
T Consensus 48 ~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 48 RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 466778899999999999999999999999999999988876
No 154
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=58.49 E-value=27 Score=20.84 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
|.+|+.|...|+.+-+.|++..-.-|+++
T Consensus 5 vaqlenevaslenenetlkkknlhkkdli 33 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLI 33 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHH
Confidence 56666666666666666666655555554
No 155
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=58.28 E-value=20 Score=26.80 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+++.+...|++||..|...+..|..+++
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666665554444
No 156
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=57.94 E-value=14 Score=21.65 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy12101 40 KIKILSRELSFL 51 (105)
Q Consensus 40 ~I~~L~kEl~~L 51 (105)
+|..|+..|..|
T Consensus 52 ri~~Le~~l~~l 63 (70)
T 1zme_C 52 DLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 157
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=57.60 E-value=18 Score=23.80 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
|+++...|+.+|.+|+.++..|+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555555555554
No 158
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=57.39 E-value=38 Score=23.96 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
+=+....++..++..|+.|-=.|+.+|..-..||..|+.-+....+.
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gK 108 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcc
Confidence 34567788899999999999999999999999999999888887543
No 159
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=56.82 E-value=43 Score=22.75 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=37.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+=+.+..++..++..|+.|-=.|+.+|..-..||..|+.-+.+.
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34567788889999999999999999999999999998888775
No 160
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=56.76 E-value=26 Score=26.05 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.-...|..|+++|+.|+.++...+.+...+.+.|.+
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888888888888887777776644
No 161
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=56.38 E-value=6.6 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.|.+++..|+-|+..||..+..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666666644
No 162
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.01 E-value=28 Score=26.31 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
...++.....|.++++....+|+.|++++..|+.-.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666666666666666666666666666666555
No 163
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.85 E-value=65 Score=25.30 Aligned_cols=48 Identities=21% Similarity=0.034 Sum_probs=33.9
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+..++......+++..-+..+++.+..+.+|+.|++|...++.++...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 444444445555666666677778888888888888888888887764
No 164
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.82 E-value=51 Score=23.27 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.++++..+..|.++.....++|+.|+++...|..-+..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 377888888888888888888888888888888766544
No 165
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.67 E-value=25 Score=21.56 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.+.|...|+..|..|+-||+.||
T Consensus 54 ~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666677777777777777665
No 166
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=55.04 E-value=5.3 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
.+..++..|+.+++.++.++..|..++
T Consensus 8 avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666665543
No 167
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=54.62 E-value=11 Score=23.58 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kE 47 (105)
+..|++++..|+.+++.|+++
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666555544
No 168
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=53.93 E-value=31 Score=25.63 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
..+++.++..|++||++|+.+-....+++
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555444433
No 169
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=53.68 E-value=24 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
..++.++..|+.+-.+|..+|..++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666643
No 170
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.62 E-value=33 Score=24.89 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...++.|+..|+..-..-+..|+.|+.++..||.++..
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666777778888888888877654
No 171
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=53.51 E-value=30 Score=19.86 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.-+.|.++.+.=..+|..|+.|+..|..+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 44567777777778888888888877653
No 172
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=53.40 E-value=15 Score=24.93 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..|..+|+.|+.+|..|+.+|..
T Consensus 19 ~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 19 SALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777766654
No 173
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.39 E-value=42 Score=21.56 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+-..++..+++.....|+.+=..|+.++..|+.-+..
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777666554
No 174
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=52.52 E-value=0.44 Score=30.08 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
....|+..|++++..|+.|++.|+..-..|
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~ 92 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPAESCLEH 92 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCGGGGTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777776554443
No 175
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=52.33 E-value=15 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..|+.+...|+.++.+|.+++..++.-
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666543
No 176
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=51.88 E-value=39 Score=21.71 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
...+..|..|++.|..++..+..|+..++
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777776655
No 177
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=51.47 E-value=31 Score=20.50 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+|-.+|+.++..|.+.+..||.-+-+
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999998888877654
No 178
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=51.32 E-value=28 Score=25.59 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
...+..-...|+++-..|...|+.|+.....+..+.
T Consensus 58 ~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 58 KNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666555555554
No 179
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=51.09 E-value=44 Score=22.20 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
...+..+++.|++.-..++.+|..+..++.
T Consensus 97 ~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 97 KNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444544444444443
No 180
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=51.09 E-value=55 Score=22.59 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+.+-..|+.+|+.||.....+....-+|.+.|-.
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~ 120 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMR 120 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888766665555554444433
No 181
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.03 E-value=43 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.++..|++|++.|+.+++.+.+|...|.+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444444444444444433
No 182
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=50.96 E-value=4.5 Score=30.89 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
+..+.++|..||..++++|+.|+.+
T Consensus 153 ~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 153 SADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 183
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.96 E-value=61 Score=26.22 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..+...+.+|.+....|+.++++++.|+..+++.|.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777766654
No 184
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=50.93 E-value=80 Score=24.07 Aligned_cols=42 Identities=10% Similarity=0.272 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
|.+-..+.+++.....|+..+.+++++.+..+..+|+..-.|
T Consensus 177 K~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 177 KGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346677888888889999999999999999888888776554
No 185
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=50.82 E-value=11 Score=28.60 Aligned_cols=46 Identities=13% Similarity=-0.036 Sum_probs=23.7
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 11 RSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 11 RSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
|.|+.+...-++...+.+.+..+...|..+...++.+++.|+.-+.
T Consensus 134 ~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 134 HFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666666666665555555555555543
No 186
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.66 E-value=47 Score=21.32 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
......+...+..+-..|+.++..|..++..|+.-+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666666666666655544
No 187
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=50.29 E-value=72 Score=23.38 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=26.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+++..++..-...|..+-..|+.+...|..+++.|+.
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777777777888887777
No 188
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.09 E-value=45 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
+...+..|.++.+.|+.+...|+++++.|..-|..+
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888888888888887664
No 189
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=49.69 E-value=40 Score=20.29 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
+.+++.-.|..|...-+.|...|..|+-++..-|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666655555433
No 190
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.47 E-value=29 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.|-+.|..+|+.|..++..|...+..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555666666666666655554
No 191
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.41 E-value=57 Score=23.17 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcCC
Q psy12101 20 TQETMERVNKLKTENDMLEEK----IKILSRELSFLKNLFLAHAGST 62 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~----I~~L~kEl~~LK~ll~~h~~~~ 62 (105)
+.+-..|+.+|+.||.....+ |..-...+..+.++|..-+.++
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888765554 5555666666677777655543
No 192
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.27 E-value=1.1e+02 Score=25.09 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=34.3
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy12101 6 LQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTN 63 (105)
Q Consensus 6 N~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~ 63 (105)
|.|-++|+.- ......++..+..-+.+...|+..+..+...+..|+..+.+....+.
T Consensus 80 e~~tq~skkm-l~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 80 EQLTQKSKKI-IEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp HHHHHHHHHH-HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3444555322 22233344445555557777888888888888888887777665543
No 193
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=48.26 E-value=61 Score=22.30 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
..+|.+|+.|..+|+.+-..|..|....+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555555555555555555443
No 194
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=47.63 E-value=3.9 Score=30.22 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+.+..++..|+++++.|++.+
T Consensus 259 ~~~~~~~~~l~~~~~~l~~~l 279 (285)
T 3rvy_A 259 DNINNEIIKLREEIVELKELI 279 (285)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 195
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=47.28 E-value=57 Score=21.30 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHhhc
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLESLLAD 78 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~~ll~~ 78 (105)
+-++|-...+++.+.-...+..++.++.+ .|||++.|+..
T Consensus 42 ERree~~~~~~~~~er~~Kl~~~~e~l~~----------~GI~~eeL~~~ 81 (86)
T 3nr7_A 42 ERREEESAAAAEVEERTRKLQQYREMLIA----------DGIDPNELLNS 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------TCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHhh
Confidence 33444444455555555567777777775 46777777653
No 196
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.22 E-value=10 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L 44 (105)
.++..|+++...|+..|..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444433
No 197
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.15 E-value=28 Score=28.09 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
|..+-..|+.+|..|..++..+..
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 69 LIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 198
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.22 E-value=39 Score=21.51 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
.++.|+.+.+.|+.+|..|..++
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555
No 199
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=46.16 E-value=37 Score=18.78 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
+.+..||..|...|-+-+.+|..|+.
T Consensus 4 qalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55677788888888888888877754
No 200
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.77 E-value=57 Score=20.61 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
-+-|+.+|-+-|..|-.++..|++++..|..
T Consensus 25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 25 SEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3567888888888888888888888887754
No 201
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=44.72 E-value=38 Score=21.31 Aligned_cols=27 Identities=37% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
|...|=-+|+.|++|+.-|-.-|+.|-
T Consensus 35 Ei~KL~LEIQKL~~EL~glskeflehi 61 (65)
T 2yf2_A 35 EIRKLFLEIQKLKVELQGLSKEFLEHI 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHH
Confidence 445566678888888888877777663
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.46 E-value=60 Score=26.30 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.++.....|..|++.|+.++..|++|+..+++-+..
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~ 88 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKR 88 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666667777777777777777777776644
No 203
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=44.09 E-value=59 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.+.++.|+.|...++.+|+.-+.+|..|
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL 31 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQEL 31 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999988888766655443
No 204
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.19 E-value=83 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 34 NDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
-..++.++..|...+.--..+|.
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 205
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=41.97 E-value=96 Score=25.85 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.|..+-..|+.+|..|..++..+..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 206
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=41.85 E-value=5.4 Score=29.43 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
...+.+++.+|...|+++++.|+++++.
T Consensus 254 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 254 VQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp ----------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345566777777777777777766543
No 207
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.59 E-value=82 Score=21.54 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 31 KTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..+...++..+..|+.++..|+..|.+
T Consensus 57 ~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 57 NKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555544
No 208
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.58 E-value=84 Score=21.60 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
......++..+|..|+.|.+.-+..+.....|++.|+.-+-
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666555555555555554444
No 209
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.51 E-value=56 Score=19.60 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
..++..|.++|-+|+..-..|.+=+..|++-+
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdei 40 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEI 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHH
Confidence 34455555555555555555555555555544
No 210
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.40 E-value=74 Score=23.24 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+-+.+|.+|.+-|..-..+|..|+.|+..+..-|
T Consensus 43 EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 43 EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 3456677777777777777777777766665544
No 211
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=41.35 E-value=30 Score=23.05 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+|+.++..|++|+..+++-+..-.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666665543
No 212
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=41.30 E-value=75 Score=21.62 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..+...|++....|+++|..|+.-+..|...+....
T Consensus 80 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 80 EARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777777766666666666554
No 213
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.13 E-value=85 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEE 39 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~ 39 (105)
.++..++..|..|.+.++.
T Consensus 6 rdL~~~~~~L~~E~e~~k~ 24 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKE 24 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 214
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=41.06 E-value=44 Score=18.22 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
+.|++.-.+|+.+++.|.+.++.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666554
No 215
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.03 E-value=49 Score=22.63 Aligned_cols=40 Identities=5% Similarity=0.054 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...-+..+..+|+++...|+..+..|..-+..++.++...
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456677777788888888888888888888887776653
No 216
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.00 E-value=69 Score=20.48 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=33.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
...+..+++.+|..|++.-+.=+.+=..++.|+..+-+.|.-+
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3456677888888888888887777888888888888877654
No 217
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=40.98 E-value=39 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 31 KTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.++...|+.+|..|+.++..|+..
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNKL 45 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444555555555555555553
No 218
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=40.83 E-value=45 Score=21.56 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
+..=..+-+.-|.+|-.++..|+.|+..|-
T Consensus 34 l~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 34 LNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 333455667788889999999999987764
No 219
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.77 E-value=73 Score=20.68 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=33.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 16 SRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
...+..+++.+|..|+..-+.=+.+=..++.|+..+-+.|.-+-
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34566778888888888888777778888889888888887643
No 220
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=40.40 E-value=64 Score=19.90 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
......|++.-..|+.+|+.|+.-...|..++....+
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566778888888999999999988888888876554
No 221
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.04 E-value=50 Score=22.25 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.+|+.|...|..+|..|..=...+|
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4556666666666655544443333
No 222
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=39.76 E-value=40 Score=22.02 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
+.+++..|+++...|+.++..|+.-
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777777777777764
No 223
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.68 E-value=50 Score=25.68 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
..+.++.....|++|-+.|+.+++.+++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455555555555555555555555543
No 224
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.24 E-value=63 Score=26.41 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy12101 38 EEKIKILSREL 48 (105)
Q Consensus 38 r~~I~~L~kEl 48 (105)
+.+|..|.+++
T Consensus 82 ~~~~~~~~~~~ 92 (455)
T 2dq0_A 82 VKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 225
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=38.57 E-value=62 Score=19.23 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
+.-.=..++..+-..|..++..|+.++..|+.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444567777888888888888888877764
No 226
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=38.55 E-value=88 Score=20.99 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 35 DMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.+|+.++..|..|++.++.-|.+..
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666554
No 227
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=38.54 E-value=17 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+..++.+...|+..++.++..+..|+..+.+
T Consensus 13 Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~ 43 (319)
T 1fzc_C 13 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQ 43 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 228
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=38.21 E-value=46 Score=21.17 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.+.-+|-..|+++|-.|+.|+...+.-+..
T Consensus 5 lr~iLqERNELKa~vf~lqeEL~yY~~e~l~ 35 (65)
T 1yhn_B 5 FEQILQERNELKAKVFLLKEELAYFQRELLT 35 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4556677788999999999999999977654
No 229
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=37.83 E-value=1.2e+02 Score=22.53 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=37.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
+=+....++..++..|+.|--.|+.+|..-..||..|+.-+....+.
T Consensus 62 ~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGK 108 (180)
T 1j1e_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhc
Confidence 34567788899999999999999999888888888888888776543
No 230
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.79 E-value=68 Score=20.39 Aligned_cols=34 Identities=6% Similarity=-0.157 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.-+++|.........+|..|+.++..|.+-+...
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355555666666666666666666666555543
No 231
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.27 E-value=80 Score=20.16 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+.....++..+-..|+..+..+..++..++..+..
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555544443
No 232
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.89 E-value=82 Score=24.02 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
-+..|...+++++..|..+++..+.|...+..-+.+-
T Consensus 168 yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~ 204 (228)
T 3q0x_A 168 FLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQC 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888887777653
No 233
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.84 E-value=61 Score=18.65 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl 48 (105)
+.+-..+...|+.++..|++|-
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666654
No 234
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=36.58 E-value=1.4e+02 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
.+++.....+.||..-++++..++.
T Consensus 135 ~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 135 VLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 3344444444445555555554444
No 235
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=36.40 E-value=87 Score=20.30 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+....+..+..++.++..+..+|..|++-+..|..-+
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555554444433
No 236
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.39 E-value=32 Score=23.89 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIK 42 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~ 42 (105)
--.++..++..|+-||..|+.+|.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356888999999999999999986
No 237
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=36.39 E-value=1.1e+02 Score=22.94 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
.+...+..+-..-+.|..+++...+.+..||+-|++.+=.
T Consensus 380 ~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL~~af~ 419 (464)
T 2y7c_A 380 EIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFR 419 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555567777778888888888888889999988887644
No 238
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=36.30 E-value=13 Score=24.87 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKI 41 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I 41 (105)
|.+|.+||.+|..|+.++
T Consensus 64 QKKImdLE~~~~~l~~el 81 (88)
T 1uuj_A 64 QKKVMELESKLNEAKEEF 81 (88)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 239
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.28 E-value=87 Score=20.25 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.+++.+|..|+.--+.|..+.+.|-.|...-..-
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~K 36 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQK 36 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777776666665544333
No 240
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=36.14 E-value=77 Score=19.61 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
+...|.+|.+||..|..-++.-++
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqk 38 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQR 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555554433
No 241
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=36.11 E-value=56 Score=18.02 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.|++|--.|..-|..|++.++.|.+-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888877654
No 242
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=36.01 E-value=51 Score=21.12 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 27 VNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...|...-..|+.+|+.|+.-+..|..++..
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 106 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQAMEA 106 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666666666665543
No 243
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.83 E-value=69 Score=18.96 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
|+++-+.....|+..|..|..++..
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 244
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.81 E-value=1.3e+02 Score=22.08 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+...+++.++..|+...+.|..++..|+..|.
T Consensus 48 ~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 48 SLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444443333
No 245
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=35.12 E-value=80 Score=24.68 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
|+++..+-.++|+.|..|+..|-.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 246
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=34.93 E-value=87 Score=23.71 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
..++..++..|.++...|+.++..|+..
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455555555555555555555555555
No 247
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=34.39 E-value=63 Score=18.10 Aligned_cols=29 Identities=34% Similarity=0.330 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
+.++|..|.+.--.|--+|..|+..++.|
T Consensus 6 lkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 6 LKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444
No 248
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=33.93 E-value=39 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=25.0
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 9 VKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 9 akRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
++++|.|||- +-.++..+-..|+.|.++|.+...
T Consensus 96 ~~~~R~KRK~----lV~~IQ~~L~~~D~l~~~i~~~~~ 129 (137)
T 1t7s_A 96 AKRNREKRKT----LVNGIQTLLNQNDALLRRLQEYQS 129 (137)
T ss_dssp CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh----HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677877775 445566688999999999887643
No 249
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.88 E-value=92 Score=19.81 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
..|+...+.+...|+.|.+.+..+..-+...
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 250
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=33.82 E-value=1.1e+02 Score=23.13 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNL---FLAHA 59 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l---l~~h~ 59 (105)
..+++..+..+..+-..|..++..|+.++..|... +..-.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 45667778889999999999999999999999888 66544
No 251
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=33.76 E-value=1.2e+02 Score=23.41 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=42.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC------chhh--HHHHhhccCC-----CC
Q psy12101 17 RIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDM------DDID--LESLLADAVD-----TP 83 (105)
Q Consensus 17 Kqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~------~~~d--l~~ll~~~~~-----~~ 83 (105)
-.|..+++.|++++.+.-...+.+|..++.-+.-|-+-+....-.-.|++= .|.+ +..|++++.+ +.
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~d 91 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQAN 91 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccc
Confidence 445566666666666666666667777666665555555432222222221 1222 4677777632 11
Q ss_pred CCCCCccCCCCCCCCCCCCCC
Q psy12101 84 PSVPCTSSRSNYNSSSLSTPS 104 (105)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ 104 (105)
--+.-..+.+|+-.+--.||+
T Consensus 92 iqV~ea~Rsp~~~~~kr~tPR 112 (233)
T 2yko_A 92 VQIQEIQRTPQRYSSRRATPR 112 (233)
T ss_dssp CCEEEEEEC-------CCSCC
T ss_pred eeeechhcCCCCCCCCCCCCC
Confidence 112334566677666666775
No 252
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.75 E-value=86 Score=19.48 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
|=|+-...+..+|.+|+..+..-+.+|+-|.+=|
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788899999999999999998887644
No 253
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=33.58 E-value=50 Score=21.75 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
-.+++++-+++..|+.+|+.|++.+.
T Consensus 71 ~~ki~~~~~~d~~l~~~i~~l~~~l~ 96 (101)
T 3pvv_A 71 QRKILSEMAERREVFDHVKELTTRIR 96 (101)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 35678888889999999998887665
No 254
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.83 E-value=1.1e+02 Score=24.23 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
...++..|+.....++.+|..|+..+..|...+..
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667788888888888888888888888876553
No 255
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.79 E-value=1.5e+02 Score=21.87 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=6.4
Q ss_pred CCCchhhHHHHhh
Q psy12101 65 IDMDDIDLESLLA 77 (105)
Q Consensus 65 ~~~~~~dl~~ll~ 77 (105)
+.|....++.|..
T Consensus 206 ~~lppq~~~~i~~ 218 (256)
T 3na7_A 206 IRLNDKIYTEVLT 218 (256)
T ss_dssp CBCCHHHHHHHHH
T ss_pred eeeCHHHHHHHHC
Confidence 4455555555544
No 256
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=32.70 E-value=72 Score=18.25 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTEN 34 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN 34 (105)
.|++|-.+.-|.-.+....|++.++++-
T Consensus 6 dAIKKKMq~lK~ekd~A~drAe~~E~~~ 33 (40)
T 2z5i_I 6 DAIKKKMQMLKLDKENALDRAEQLENEV 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4666766666666666666676666654
No 257
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.50 E-value=1e+02 Score=19.81 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 32 TENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.-...|+.+|.....++..|+.-+-.+
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777766554
No 258
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=32.12 E-value=60 Score=21.83 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSR 46 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~k 46 (105)
.+..++..|+.+...|+.++..|++
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556678888888888888888776
No 259
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=31.72 E-value=98 Score=21.68 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.|++....+..+|..+..++..|..-+
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRF 30 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 260
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=31.66 E-value=1.2e+02 Score=20.61 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
..+...|...-+.|..+|..|+.-+..|..++......
T Consensus 79 ~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~ 116 (146)
T 3hh0_A 79 EVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKE 116 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566677788888999999999999998888776544
No 261
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=31.48 E-value=51 Score=20.71 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+...|.+|.+||..+..-++.-.+--..|..++
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~v 44 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777766665555544444444433
No 262
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=31.39 E-value=45 Score=21.54 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 36 MLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 36 ~Lr~~I~~L~kEl~~LK~ll 55 (105)
.|+.+|.+|+.++..|+..+
T Consensus 6 ~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 6 ELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444
No 263
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.28 E-value=39 Score=27.51 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 29 KLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 29 ~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.|+.|+..++.+...+++++..+++-+
T Consensus 43 ~l~~e~~r~~~e~~~~~~~~~~~~~~i 69 (434)
T 4b4t_M 43 IFRSELQRLSHENNVMLEKIKDNKEKI 69 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 264
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.23 E-value=97 Score=19.30 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+....+..+...+..+..+...|..|++-+..|..=|
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 265
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.26 E-value=85 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
.|+..|+.|...|..+-..|-+-+.+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~ 31 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNI 31 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444443
No 266
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.75 E-value=1.1e+02 Score=19.45 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 28 NKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
..|+..-..|+.+|+.|+.-+..|...+
T Consensus 78 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 78 AALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554443
No 267
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=29.70 E-value=64 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..+..++.+++..-+.+-..|..|..|+..+|.|+.-|.
T Consensus 226 ~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (268)
T 2yo3_A 226 KGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKLHH 264 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 344455555566666666667777777888777776553
No 268
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.70 E-value=1.7e+02 Score=21.65 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDM 36 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~ 36 (105)
.++..++..|..|.+.
T Consensus 59 ~~L~~~~~~L~~E~e~ 74 (189)
T 2v71_A 59 RDLQADNQRLKYEVEA 74 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 269
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=29.67 E-value=76 Score=21.35 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 20 TQETMERVNKLKTEN------------DMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN------------~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
...+...+.+|..|+ ..|+.++..|..|++.++.-|.+...+
T Consensus 32 ~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~ 85 (94)
T 3vlc_E 32 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 85 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567777776 578999999999999988877765533
No 270
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=29.66 E-value=31 Score=23.47 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK~l 54 (105)
+.|+.+|..|+.+|..|+.+
T Consensus 25 ~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 25 EELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44667777777777777765
No 271
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=29.57 E-value=56 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+..|+...+.|+.+|..|+..+..+..++..
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~~~ 60 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQKELCSA 60 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45557777777778888887777777666543
No 272
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=29.49 E-value=1.3e+02 Score=20.10 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
.....|.+.-..|+++|..|+.-...|..++....
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (135)
T 1q06_A 79 DVKRRTLEKVAEIERHIEELQSMRDQLLALANACP 113 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777788888888888888888888776543
No 273
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.42 E-value=1.4e+02 Score=20.44 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSF 50 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~ 50 (105)
+....+.+|.++...|+..|+.|.+|=++
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777888888888888888888554
No 274
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.30 E-value=92 Score=18.67 Aligned_cols=8 Identities=38% Similarity=0.572 Sum_probs=4.6
Q ss_pred hhHHHHhh
Q psy12101 70 IDLESLLA 77 (105)
Q Consensus 70 ~dl~~ll~ 77 (105)
.|++.++.
T Consensus 68 ~~l~~~~~ 75 (89)
T 3coq_A 68 EDLDMILK 75 (89)
T ss_dssp SCHHHHHH
T ss_pred hhhHHhhc
Confidence 45666654
No 275
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.28 E-value=72 Score=21.01 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=23.8
Q ss_pred hhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Q psy12101 4 PYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEK-------IKILSRELSFLKNLFLA 57 (105)
Q Consensus 4 RNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~-------I~~L~kEl~~LK~ll~~ 57 (105)
+|-..|--+=.+.||- ++.++......|..+..+ ...|..|+..|+.-+..
T Consensus 13 leLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 13 RELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444432 344445555555555443 34445555555544443
No 276
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.25 E-value=1.2e+02 Score=19.76 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
+....+..+..++.++..+..+|..|++-+..|..=
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555444443
No 277
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=29.00 E-value=96 Score=18.52 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFL 51 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~L 51 (105)
.++..-+..+..-...|+..+..|...+..|
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666555554
No 278
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=28.81 E-value=93 Score=18.81 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
..++++|+.+--.-+..|..|..|+-+|=++
T Consensus 13 Rkk~eeler~lrk~kk~iKklEdeNPWLGNI 43 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEEDNPWLGNI 43 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchhhh
Confidence 4567788888888888888888887766443
No 279
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=28.65 E-value=41 Score=24.19 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
+-.+.+.|.++-..|-.+|++|.++
T Consensus 103 ~laqLe~ls~qL~~ls~~v~~L~~q 127 (140)
T 3iyn_Q 103 LLAQLDSLTRELNVVSQQLLDLRQQ 127 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554433
No 280
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.61 E-value=1.2e+02 Score=20.57 Aligned_cols=33 Identities=6% Similarity=0.062 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
+..|++.|+..-..|...+..++..+..+...+
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444444443
No 281
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.40 E-value=93 Score=18.18 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
++-+++...-.|.+.-+.+|..|++-+..|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778888888888888877666644
No 282
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.22 E-value=2.9e+02 Score=23.90 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred CcchhhHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchhhHH
Q psy12101 1 MAEPYLQAVKRSRVKSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDIDLE 73 (105)
Q Consensus 1 ~reRNN~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~dl~ 73 (105)
+|++=..+. =......+-..+++.++..|+.+.+.--.+|..|+.-|..++.-+..-. .|||+.
T Consensus 94 Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE--------vDIdiq 157 (562)
T 3ghg_A 94 LRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE--------VDIDIK 157 (562)
T ss_dssp TSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
No 283
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=28.11 E-value=66 Score=20.66 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 24 MERVNKLKTENDMLEEKIKILSREL 48 (105)
Q Consensus 24 ~~Rv~~Le~EN~~Lr~~I~~L~kEl 48 (105)
-.+++++-+++..|+..|+.|++.+
T Consensus 68 ~~ki~~~~~~d~~~~~~i~~l~~~l 92 (94)
T 1j1v_A 68 CRKIEQLREESHDIKEDFSNLIRTL 92 (94)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3567778888888999888887765
No 284
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=27.95 E-value=1e+02 Score=18.64 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.++..-+..+...+..++..+..|...+..|..
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666777777777777777777777766653
No 285
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.92 E-value=1.2e+02 Score=20.75 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy12101 7 QAVKRSRVKSRIKTQETMERVNKLKTENDMLEE 39 (105)
Q Consensus 7 ~AakRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr~ 39 (105)
.|..+.-...+....++...+.+|+..-+.|+.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555544444444
No 286
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=27.90 E-value=81 Score=21.24 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12101 34 NDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl~~LK~ 53 (105)
...|..+|..|+.++..|+.
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33344555555555555554
No 287
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.82 E-value=74 Score=16.82 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kE 47 (105)
+.+|-+|-+.|+.++..|++.
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555565555555544
No 288
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.57 E-value=1.4e+02 Score=20.13 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
+...+..+...|+++...|+..+..|...+..+...+..
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777776654
No 289
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.45 E-value=1.2e+02 Score=19.10 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKIL 44 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L 44 (105)
..+..+..|+.+-..++..++..
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555433
No 290
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=27.29 E-value=1.5e+02 Score=20.27 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12101 38 EEKIKILSRELSFLKN 53 (105)
Q Consensus 38 r~~I~~L~kEl~~LK~ 53 (105)
..+|..|.++++.|++
T Consensus 144 ~~~i~~L~~~l~~le~ 159 (166)
T 3pjs_K 144 TRTTRALHERFDRLER 159 (166)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 291
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=27.20 E-value=27 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 31 KTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 31 e~EN~~Lr~~I~~L~kEl~~LK 52 (105)
...|..|+.++..|+.||..||
T Consensus 25 ~eKsk~lq~QL~~Lk~ELe~lk 46 (90)
T 1ef1_C 25 AEKNERVQKHLKALTSELANAR 46 (90)
T ss_dssp HHHCHHHHHHHHHHHHHHHTTB
T ss_pred HHHhHHHHHHHHHHHHHHHHHh
Confidence 3457788888888888887765
No 292
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.06 E-value=1.6e+02 Score=20.36 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q psy12101 23 TMERVNKLKTENDMLEE---KIKILSRELSFLKNLFLA 57 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~---~I~~L~kEl~~LK~ll~~ 57 (105)
.+..+.+|++|-.++++ +|..|+..+..++.=|.+
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445556666666666 667777777777666654
No 293
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.94 E-value=1.5e+02 Score=20.20 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
.++..+..|..+|..|..+|-.|...++.|-.
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 35556666666666666666666666655543
No 294
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.67 E-value=25 Score=21.07 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 32 TENDMLEEKIKILSRELSF 50 (105)
Q Consensus 32 ~EN~~Lr~~I~~L~kEl~~ 50 (105)
.+...|+.+|..|+..|..
T Consensus 58 ~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544433
No 295
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=26.65 E-value=1.4e+02 Score=19.69 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12101 25 ERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAG 60 (105)
Q Consensus 25 ~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~ 60 (105)
+|...|.+....|+.+|+..++.-+-|-.|...+..
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455555555555555555555555555544443
No 296
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.46 E-value=1.9e+02 Score=22.25 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
|.+++++|+..|+...+.+....+...+.+..+.+-+..-
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888877777777777777777666655543
No 297
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=26.44 E-value=16 Score=24.92 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=9.6
Q ss_pred hHHHHHhHHHHHhhHHHH
Q psy12101 6 LQAVKRSRVKSRIKTQET 23 (105)
Q Consensus 6 N~AakRSR~KrKqk~~e~ 23 (105)
|++-+|-|++=..+-.++
T Consensus 32 n~~ERrRR~~In~~~~~L 49 (118)
T 4ati_A 32 NLIERRRRFNINDRIKEL 49 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 556666666544444443
No 298
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.38 E-value=1.3e+02 Score=19.17 Aligned_cols=19 Identities=21% Similarity=0.073 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEK 40 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~ 40 (105)
+++.+...|.+|...|..+
T Consensus 39 ele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 299
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.10 E-value=1.1e+02 Score=18.04 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
+++.+|+.|+.--+.|..+.+.|-.|...-..-+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888777765544443
No 300
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=25.90 E-value=1.5e+02 Score=22.05 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=44.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCchh
Q psy12101 15 KSRIKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGSTNGIDMDDI 70 (105)
Q Consensus 15 KrKqk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~~~~~~~~~~ 70 (105)
+=+....++..++..|+.|--.|+.+|..-..||..|+.-+....+.-.-..|.-|
T Consensus 59 ~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLrGKfkKP~LkkV 114 (182)
T 1ytz_I 59 ELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRV 114 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGTCSCSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhhc
Confidence 34567788999999999999999999999999999999998887654333344333
No 301
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.67 E-value=1e+02 Score=24.99 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.++..|+..|+.+.+.|+.+-+.++.|...++.-+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~ 79 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKREL 79 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666555444
No 302
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=25.63 E-value=2.1e+02 Score=21.37 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHAGS 61 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~~~ 61 (105)
+...+..+...-+.|.+.++.+.+.+..+|+-+++++-.
T Consensus 168 Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k~~ll~~~~~ 206 (464)
T 2y7c_A 168 IAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGGAVN 206 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455666677777777777777888889888887643
No 303
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.29 E-value=1.3e+02 Score=18.80 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRE 47 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kE 47 (105)
+..++..|+..-..++.++..|+..
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 304
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.07 E-value=1.4e+02 Score=20.23 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 30 LKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 30 Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
|..--..|..++..|++|+..|+.-+.
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554433
No 305
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.00 E-value=1.8e+02 Score=21.24 Aligned_cols=7 Identities=0% Similarity=-0.007 Sum_probs=2.7
Q ss_pred HHHHhhH
Q psy12101 14 VKSRIKT 20 (105)
Q Consensus 14 ~KrKqk~ 20 (105)
+-||.++
T Consensus 96 DiRKLrE 102 (167)
T 4gkw_A 96 DMRKLGE 102 (167)
T ss_dssp HHHHTHH
T ss_pred hHHHHHH
Confidence 3334333
No 306
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.87 E-value=1.8e+02 Score=23.54 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
++.++++.++..+.+....|+++...|.+++..+++-+.
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELR 63 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666665443
No 307
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.80 E-value=1e+02 Score=24.96 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 19 KTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 19 k~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
+..+..+.+..|+.+...|..++..++.|+..|+..
T Consensus 33 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~ 68 (405)
T 4b4t_J 33 KIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEP 68 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344556667788999999999999999999888763
No 308
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.77 E-value=1.5e+02 Score=19.43 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.-+..|++.|+..-..|...+..++..+..+...+.+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777666666655543
No 309
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.77 E-value=1.6e+02 Score=19.74 Aligned_cols=40 Identities=28% Similarity=0.183 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
.+-.++..|+.+.+..|..|.+.-..|..++..|+.-+-.
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777778888877777777888777776654
No 310
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=24.72 E-value=1.3e+02 Score=18.77 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
++..-+..+......|...|..|...+..|..-
T Consensus 15 ~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 15 HIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444555555555555556666555555555443
No 311
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.72 E-value=1.4e+02 Score=18.82 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhh
Q psy12101 22 ETMERVNKLKTEN------------DMLEEKIKILSRELSFLKNLFLAH 58 (105)
Q Consensus 22 e~~~Rv~~Le~EN------------~~Lr~~I~~L~kEl~~LK~ll~~h 58 (105)
.+...+..|..|+ ..|+.++..|..|++.+..-|..-
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444556666665 578899999999999988877653
No 312
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.39 E-value=2e+02 Score=20.72 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=27.0
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q psy12101 9 VKRSRVKSRIKTQETMERVNKLKTENDMLE-------EKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 9 akRSR~KrKqk~~e~~~Rv~~Le~EN~~Lr-------~~I~~L~kEl~~LK~ll~~ 57 (105)
.+.=|++.+.+..++.+.......|-..|- ++|..|.+|+..|+.-+..
T Consensus 76 l~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 76 AQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344445545455555555555555555553 5667777777777655544
No 313
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.56 E-value=26 Score=25.05 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.++.|+..|+..-..-+..|+.|+.++..||.+|
T Consensus 100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555566666666666654
No 314
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.21 E-value=2.9e+02 Score=22.04 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~h~ 59 (105)
..+++..+++++.++..|.+++.....+-..|.+.+....
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 19 IAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444455555555555555554444444444555555443
No 315
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.92 E-value=1.3e+02 Score=17.94 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLK 52 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK 52 (105)
.++..-+..+..-...|+..+..|...+..|.
T Consensus 12 ~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 12 EELRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666654
No 316
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=22.85 E-value=1.3e+02 Score=19.83 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 20 TQETMERVNKLKTENDMLEEKIKILS 45 (105)
Q Consensus 20 ~~e~~~Rv~~Le~EN~~Lr~~I~~L~ 45 (105)
..++..++.+|..++..|+.+++.|.
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~l~ 27 (206)
T 3i5c_A 2 MKQLEDKVEELLSKNYHLENEVARLK 27 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777776666654
No 317
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=22.85 E-value=86 Score=19.52 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSRELSFLK 52 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK 52 (105)
+.|..++..|++|+-.||
T Consensus 15 ~EL~~~l~elk~ELf~LR 32 (71)
T 1vq8_V 15 AEREAELDDLKTELLNAR 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666666655555
No 318
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.80 E-value=2e+02 Score=20.04 Aligned_cols=33 Identities=3% Similarity=0.049 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 21 QETMERVNKLKTENDMLEEKIKILSRELSFLKN 53 (105)
Q Consensus 21 ~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ 53 (105)
..+++++..++.....+..+|..|...+..|..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888888888889999999888877763
No 319
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.79 E-value=1.8e+02 Score=19.66 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 18 IKTQETMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 18 qk~~e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
.|...+...++.|++.-..++.++..+...+..+-..
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777666665543
No 320
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.78 E-value=1.6e+02 Score=19.02 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 27 VNKLKTENDMLEEKIKILSRELS 49 (105)
Q Consensus 27 v~~Le~EN~~Lr~~I~~L~kEl~ 49 (105)
+..|+.|-..|..-|+.|+....
T Consensus 48 i~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 48 VTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 321
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=22.36 E-value=18 Score=24.60 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Q psy12101 28 NKLKTENDMLEEKIKIL-------SRELSFLKNLFLAHA 59 (105)
Q Consensus 28 ~~Le~EN~~Lr~~I~~L-------~kEl~~LK~ll~~h~ 59 (105)
..+..|.-.|+.+|.+| +.|++.||++-..+.
T Consensus 39 ~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqk 77 (95)
T 3n7n_E 39 KKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQK 77 (95)
T ss_dssp ---------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655 455666666554443
No 322
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.95 E-value=91 Score=19.48 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSRELSFLK 52 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl~~LK 52 (105)
+.|..++..|++|+-.||
T Consensus 12 ~EL~~~L~elk~ELf~LR 29 (72)
T 3j21_W 12 EEIDAKIRELRLQLAKER 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555554444
No 323
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=21.82 E-value=64 Score=23.01 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 33 ENDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 33 EN~~Lr~~I~~L~kEl~~LK~ll 55 (105)
|.++|+.++..|.+++...+..+
T Consensus 3 e~~~l~~~~~~l~~~~~~~~~~~ 25 (340)
T 1got_B 3 ELDQLRQEAEQLKNQIRDARKAC 25 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666666666665555543
No 324
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=21.81 E-value=74 Score=19.33 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12101 34 NDMLEEKIKILSRELSFLKNLF 55 (105)
Q Consensus 34 N~~Lr~~I~~L~kEl~~LK~ll 55 (105)
.+.|..++..|++|+-.||-..
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~ 32 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQA 32 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776533
No 325
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.64 E-value=2.3e+02 Score=20.28 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy12101 35 DMLEEKIKILSREL 48 (105)
Q Consensus 35 ~~Lr~~I~~L~kEl 48 (105)
..|+..|..|..++
T Consensus 101 ~kLEk~id~lEd~L 114 (155)
T 2efr_A 101 TKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 326
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.33 E-value=1.6e+02 Score=23.22 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12101 22 ETMERVNKLKTENDMLEEKIKILSRELSFLKNLFLA 57 (105)
Q Consensus 22 e~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~~ 57 (105)
..+.++..|+.....|+.+|..|+..+..|...+..
T Consensus 15 ~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 15 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667778888888888888888888887765543
No 327
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=21.22 E-value=1.9e+02 Score=19.19 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 26 RVNKLKTENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 26 Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.+..|......|+.++..+.+.+...+.++.
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~ 47 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKRQNDILQ 47 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666677777666666655555443
No 328
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=20.81 E-value=1.5e+02 Score=20.30 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 23 TMERVNKLKTENDMLEEKIKILSRELSFLKNL 54 (105)
Q Consensus 23 ~~~Rv~~Le~EN~~Lr~~I~~L~kEl~~LK~l 54 (105)
+-.++..+......|..+|..++.|+..+|.|
T Consensus 74 ld~svt~i~~~I~~lt~~i~~~~~~i~~~~~~ 105 (106)
T 2yny_A 74 LNTSMKQIEDKIEEILSKIYHIENEIARIKKL 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55677888888888999999999999988875
No 329
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=20.53 E-value=2.6e+02 Score=20.46 Aligned_cols=41 Identities=7% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12101 16 SRIKTQETMERVNKLKT----------ENDMLEEKIKILSRELSFLKNLFL 56 (105)
Q Consensus 16 rKqk~~e~~~Rv~~Le~----------EN~~Lr~~I~~L~kEl~~LK~ll~ 56 (105)
.+.+.+.++.|+++++. ++..+++.|++|..|+..+|+-+-
T Consensus 74 A~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 74 AKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655 466788999999999998887664
No 330
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.44 E-value=1.6e+02 Score=17.96 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy12101 40 KIKILSRELSFLKNLFLAHA 59 (105)
Q Consensus 40 ~I~~L~kEl~~LK~ll~~h~ 59 (105)
.|..|...+..|..+|.++.
T Consensus 49 ~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34455555555556665543
Done!